From a472dc5214905affd8fab2427a99f7eeb20d1168 Mon Sep 17 00:00:00 2001
From: "Emily M. Boudreaux" <emily@boudreauxmail.com>
Date: Fri, 28 Nov 2025 09:46:00 -0500
Subject: [PATCH] docs(docs): rebuilt for version v0.7.1_rc2

---
 docs/html/CVODE__solver__strategy_8cpp.html   |  143 +
 .../CVODE__solver__strategy_8cpp__incl.map    |  158 +
 .../CVODE__solver__strategy_8cpp__incl.md5    |    1 +
 .../CVODE__solver__strategy_8cpp__incl.svg    | 1519 +++++++
 ...CVODE__solver__strategy_8cpp__incl_org.svg | 1437 +++++++
 docs/html/CVODE__solver__strategy_8h.html     |  160 +
 docs/html/CVODE__solver__strategy_8h.js       |    7 +
 .../CVODE__solver__strategy_8h__dep__incl.map |   40 +
 .../CVODE__solver__strategy_8h__dep__incl.md5 |    1 +
 .../CVODE__solver__strategy_8h__dep__incl.svg |  456 +++
 ...DE__solver__strategy_8h__dep__incl_org.svg |  374 ++
 .../html/CVODE__solver__strategy_8h__incl.map |  137 +
 .../html/CVODE__solver__strategy_8h__incl.md5 |    1 +
 .../html/CVODE__solver__strategy_8h__incl.svg | 1330 ++++++
 .../CVODE__solver__strategy_8h__incl_org.svg  | 1248 ++++++
 docs/html/____init_____8py.html               |   27 +-
 docs/html/____init_____8py.js                 |    4 +-
 docs/html/annotated.html                      |  355 +-
 docs/html/annotated_dup.js                    |  258 +-
 docs/html/bindings_8cpp.html                  |   36 +-
 docs/html/building_8h.html                    |   33 +-
 docs/html/building_8h.js                      |   16 +-
 docs/html/building_8h__dep__incl.map          |  306 +-
 docs/html/building_8h__dep__incl.md5          |    2 +-
 docs/html/building_8h__dep__incl.svg          |  743 ++--
 docs/html/building_8h__dep__incl_org.svg      |  742 ++--
 docs/html/chains_8cpp.html                    |   27 +-
 docs/html/chains_8h.html                      |   97 +-
 docs/html/chains_8h.js                        |   34 +-
 docs/html/classPyDynamicEngine-members.html   |  136 +
 docs/html/classPyDynamicEngine.html           | 1323 ++++++
 docs/html/classPyDynamicEngine.js             |   28 +
 .../classPyDynamicEngineView-members.html     |  112 +
 docs/html/classPyDynamicEngineView.html       |  174 +
 docs/html/classPyDynamicEngineView.js         |    4 +
 .../classPyDynamicEngineView__coll__graph.map |    5 +
 .../classPyDynamicEngineView__coll__graph.md5 |    1 +
 .../classPyDynamicEngineView__coll__graph.svg |   66 +
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 .../classPyDynamicEngine__inherit__graph.svg  |   83 +
 ...assPyDynamicEngine__inherit__graph_org.svg |   58 +
 ...yDynamicNetworkSolverStrategy-members.html |  117 +
 .../classPyDynamicNetworkSolverStrategy.html  |  289 ++
 .../classPyDynamicNetworkSolverStrategy.js    |    7 +
 ...amicNetworkSolverStrategy__coll__graph.map |    5 +
 ...amicNetworkSolverStrategy__coll__graph.md5 |    1 +
 ...amicNetworkSolverStrategy__coll__graph.svg |   65 +
 ...NetworkSolverStrategy__coll__graph_org.svg |   40 +
 ...cNetworkSolverStrategy__inherit__graph.map |    5 +
 ...cNetworkSolverStrategy__inherit__graph.md5 |    1 +
 ...cNetworkSolverStrategy__inherit__graph.svg |   65 +
 ...workSolverStrategy__inherit__graph_org.svg |   40 +
 docs/html/classPyEngine-members.html          |  114 +
 docs/html/classPyEngine.html                  |  257 ++
 docs/html/classPyEngine.js                    |    6 +
 docs/html/classPyEngineView-members.html      |  112 +
 docs/html/classPyEngineView.html              |  174 +
 docs/html/classPyEngineView.js                |    4 +
 docs/html/classPyEngineView__coll__graph.map  |    5 +
 docs/html/classPyEngineView__coll__graph.md5  |    1 +
 docs/html/classPyEngineView__coll__graph.svg  |   66 +
 .../classPyEngineView__coll__graph_org.svg    |   41 +
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 .../classPyEngineView__inherit__graph.md5     |    1 +
 .../classPyEngineView__inherit__graph.svg     |   66 +
 .../classPyEngineView__inherit__graph_org.svg |   41 +
 docs/html/classPyEngine__coll__graph.map      |    9 +
 docs/html/classPyEngine__coll__graph.md5      |    1 +
 docs/html/classPyEngine__coll__graph.svg      |  103 +
 docs/html/classPyEngine__coll__graph_org.svg  |   78 +
 docs/html/classPyEngine__inherit__graph.map   |    5 +
 docs/html/classPyEngine__inherit__graph.md5   |    1 +
 docs/html/classPyEngine__inherit__graph.svg   |   64 +
 .../classPyEngine__inherit__graph_org.svg     |   39 +
 .../classPyNetworkFileParser-members.html     |  112 +
 docs/html/classPyNetworkFileParser.html       |  195 +
 docs/html/classPyNetworkFileParser.js         |    4 +
 .../classPyNetworkFileParser__coll__graph.map |    5 +
 .../classPyNetworkFileParser__coll__graph.md5 |    1 +
 .../classPyNetworkFileParser__coll__graph.svg |   65 +
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 ...assPyNetworkFileParser__inherit__graph.svg |   65 +
 ...yNetworkFileParser__inherit__graph_org.svg |   40 +
 docs/html/classPyNetworkPolicy-members.html   |  119 +
 docs/html/classPyNetworkPolicy.html           |  414 ++
 docs/html/classPyNetworkPolicy.js             |   11 +
 .../classPyNetworkPolicy__coll__graph.map     |    5 +
 .../classPyNetworkPolicy__coll__graph.md5     |    1 +
 .../classPyNetworkPolicy__coll__graph.svg     |   65 +
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 ...assPyNetworkPolicy__inherit__graph_org.svg |   40 +
 .../classPyPartitionFunction-members.html     |  116 +
 docs/html/classPyPartitionFunction.html       |  380 ++
 docs/html/classPyPartitionFunction.js         |    8 +
 .../classPyPartitionFunction__coll__graph.map |    5 +
 .../classPyPartitionFunction__coll__graph.md5 |    1 +
 .../classPyPartitionFunction__coll__graph.svg |   65 +
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 ...assPyPartitionFunction__inherit__graph.svg |   65 +
 ...yPartitionFunction__inherit__graph_org.svg |   40 +
 .../classPyReactionChainPolicy-members.html   |  121 +
 docs/html/classPyReactionChainPolicy.html     |  385 ++
 docs/html/classPyReactionChainPolicy.js       |   11 +
 ...lassPyReactionChainPolicy__coll__graph.map |    5 +
 ...lassPyReactionChainPolicy__coll__graph.md5 |    1 +
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 ...sPyReactionChainPolicy__inherit__graph.svg |   65 +
 ...eactionChainPolicy__inherit__graph_org.svg |   40 +
 docs/html/classPyScreening-members.html       |  114 +
 docs/html/classPyScreening.html               |  306 ++
 docs/html/classPyScreening.js                 |    5 +
 docs/html/classPyScreening__coll__graph.map   |    5 +
 docs/html/classPyScreening__coll__graph.md5   |    1 +
 docs/html/classPyScreening__coll__graph.svg   |   65 +
 .../classPyScreening__coll__graph_org.svg     |   40 +
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 .../html/classPyScreening__inherit__graph.svg |   65 +
 .../classPyScreening__inherit__graph_org.svg  |   40 +
 .../classPySolverContextBase-members.html     |  112 +
 docs/html/classPySolverContextBase.html       |  169 +
 docs/html/classPySolverContextBase.js         |    4 +
 .../classPySolverContextBase__coll__graph.map |    5 +
 .../classPySolverContextBase__coll__graph.md5 |    1 +
 .../classPySolverContextBase__coll__graph.svg |   65 +
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 ...assPySolverContextBase__inherit__graph.svg |   65 +
 ...ySolverContextBase__inherit__graph_org.svg |   40 +
 .../classSolverPluginInterface-members.html   |  112 +
 docs/html/classSolverPluginInterface.html     |  197 +
 docs/html/classSolverPluginInterface.js       |    5 +
 ...lassSolverPluginInterface__coll__graph.map |    5 +
 ...lassSolverPluginInterface__coll__graph.md5 |    1 +
 ...lassSolverPluginInterface__coll__graph.svg |   64 +
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 ...sSolverPluginInterface__inherit__graph.md5 |    1 +
 ...sSolverPluginInterface__inherit__graph.svg |   64 +
 ...verPluginInterface__inherit__graph_org.svg |   39 +
 docs/html/classes.html                        |   67 +-
 ...1engine_1_1AdaptiveEngineView-members.html |  153 +
 ...dfire_1_1engine_1_1AdaptiveEngineView.html | 1957 +++++++++
 ...ridfire_1_1engine_1_1AdaptiveEngineView.js |   43 +
 ...ine_1_1AdaptiveEngineView__coll__graph.map |   31 +
 ...ine_1_1AdaptiveEngineView__coll__graph.md5 |    1 +
 ...ine_1_1AdaptiveEngineView__coll__graph.svg |  378 ++
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 ..._1_1AdaptiveEngineView__inherit__graph.map |    9 +
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 ...AdaptiveEngineView__inherit__graph_org.svg |   78 +
 ..._1engine_1_1DefinedEngineView-members.html |  154 +
 ...idfire_1_1engine_1_1DefinedEngineView.html | 1837 +++++++++
 ...gridfire_1_1engine_1_1DefinedEngineView.js |   43 +
 ...gine_1_1DefinedEngineView__coll__graph.map |  104 +
 ...gine_1_1DefinedEngineView__coll__graph.md5 |    1 +
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 ...re_1_1engine_1_1DynamicEngine-members.html |  135 +
 ...ssgridfire_1_1engine_1_1DynamicEngine.html | 1224 ++++++
 ...lassgridfire_1_1engine_1_1DynamicEngine.js |   25 +
 ..._1engine_1_1DynamicEngine__coll__graph.map |    5 +
 ..._1engine_1_1DynamicEngine__coll__graph.md5 |    1 +
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 ...ngine_1_1DynamicEngine__inherit__graph.map |   19 +
 ...ngine_1_1DynamicEngine__inherit__graph.md5 |    1 +
 ...ngine_1_1DynamicEngine__inherit__graph.svg |  253 ++
 ...e_1_1DynamicEngine__inherit__graph_org.svg |  171 +
 ...sgridfire_1_1engine_1_1Engine-members.html |  113 +
 .../classgridfire_1_1engine_1_1Engine.html    |  259 ++
 .../html/classgridfire_1_1engine_1_1Engine.js |    6 +
 ...dfire_1_1engine_1_1EngineView-members.html |  112 +
 ...classgridfire_1_1engine_1_1EngineView.html |  215 +
 .../classgridfire_1_1engine_1_1EngineView.js  |    5 +
 ...re_1_1engine_1_1Engine__inherit__graph.map |   21 +
 ...re_1_1engine_1_1Engine__inherit__graph.md5 |    1 +
 ...re_1_1engine_1_1Engine__inherit__graph.svg |  271 ++
 ..._1engine_1_1Engine__inherit__graph_org.svg |  189 +
 ...gine_1_1FileDefinedEngineView-members.html |  162 +
 ...re_1_1engine_1_1FileDefinedEngineView.html |  486 +++
 ...fire_1_1engine_1_1FileDefinedEngineView.js |   12 +
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 ..._1_1FileDefinedEngineView__coll__graph.md5 |    1 +
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 ...e_1_1MultiscalePartitioningEngineView.html | 2702 +++++++++++++
 ...ine_1_1MultiscalePartitioningEngineView.js |   62 +
 ...ioningEngineView_1_1QSESolver-members.html |  135 +
 ...lePartitioningEngineView_1_1QSESolver.html |  830 ++++
 ...calePartitioningEngineView_1_1QSESolver.js |   29 +
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 ...ngEngineView_1_1QSESolver__coll__graph.md5 |    1 +
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 ...itioningEngineView__inherit__graph_org.svg |   78 +
 ..._1_1engine_1_1NetworkJacobian-members.html |  131 +
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 ...1NetworkPrimingEngineView__coll__graph.map |  107 +
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 ..._1CVODESolverFailureError__coll__graph.map |   15 +
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 ...idfire_1_1io_1_1MESANetworkFileParser.html |  357 ++
 ...gridfire_1_1io_1_1MESANetworkFileParser.js |   10 +
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 ...ANetworkFileParser__inherit__graph_org.svg |   41 +
 ...re_1_1io_1_1NetworkFileParser-members.html |  112 +
 ...ssgridfire_1_1io_1_1NetworkFileParser.html |  220 +
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 ...1NetworkFileParser__inherit__graph_org.svg |   78 +
 ...1SimpleReactionListFileParser-members.html |  117 +
 ...1_1io_1_1SimpleReactionListFileParser.html |  340 ++
 ...e_1_1io_1_1SimpleReactionListFileParser.js |    9 +
 ...pleReactionListFileParser__coll__graph.map |    5 +
 ...pleReactionListFileParser__coll__graph.md5 |    1 +
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 ...rtition_1_1CompositePartitionFunction.html |  579 +++
 ...partition_1_1CompositePartitionFunction.js |   14 +
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 ...1GroundStatePartitionFunction-members.html |  120 +
 ...ition_1_1GroundStatePartitionFunction.html |  545 +++
 ...rtition_1_1GroundStatePartitionFunction.js |   12 +
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 ...undStatePartitionFunction__coll__graph.svg |   86 +
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 ...ielemannPartitionFunction__coll__graph.svg |  187 +
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 ...gridfire_1_1policy_1_1CNOIChainPolicy.html |  273 ++
 ...ssgridfire_1_1policy_1_1CNOIChainPolicy.js |    6 +
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 ...policy_1_1CNOIChainPolicy__coll__graph.md5 |    1 +
 ...policy_1_1CNOIChainPolicy__coll__graph.svg |  360 ++
 ...cy_1_1CNOIChainPolicy__coll__graph_org.svg |  278 ++
 ...icy_1_1CNOIChainPolicy__inherit__graph.map |    7 +
 ...icy_1_1CNOIChainPolicy__inherit__graph.md5 |    1 +
 ...icy_1_1CNOIChainPolicy__inherit__graph.svg |   85 +
 ...1_1CNOIChainPolicy__inherit__graph_org.svg |   60 +
 ...1_1policy_1_1CNOIIChainPolicy-members.html |  128 +
 ...ridfire_1_1policy_1_1CNOIIChainPolicy.html |  273 ++
 ...sgridfire_1_1policy_1_1CNOIIChainPolicy.js |    6 +
 ...olicy_1_1CNOIIChainPolicy__coll__graph.map |   29 +
 ...olicy_1_1CNOIIChainPolicy__coll__graph.md5 |    1 +
 ...olicy_1_1CNOIIChainPolicy__coll__graph.svg |  360 ++
 ...y_1_1CNOIIChainPolicy__coll__graph_org.svg |  278 ++
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 ..._1CNOIIChainPolicy__inherit__graph_org.svg |   60 +
 ..._1policy_1_1CNOIIIChainPolicy-members.html |  128 +
 ...idfire_1_1policy_1_1CNOIIIChainPolicy.html |  273 ++
 ...gridfire_1_1policy_1_1CNOIIIChainPolicy.js |    6 +
 ...licy_1_1CNOIIIChainPolicy__coll__graph.map |   29 +
 ...licy_1_1CNOIIIChainPolicy__coll__graph.md5 |    1 +
 ...licy_1_1CNOIIIChainPolicy__coll__graph.svg |  360 ++
 ..._1_1CNOIIIChainPolicy__coll__graph_org.svg |  278 ++
 ...y_1_1CNOIIIChainPolicy__inherit__graph.map |    7 +
 ...y_1_1CNOIIIChainPolicy__inherit__graph.md5 |    1 +
 ...y_1_1CNOIIIChainPolicy__inherit__graph.svg |   85 +
 ...1CNOIIIChainPolicy__inherit__graph_org.svg |   60 +
 ...1_1policy_1_1CNOIVChainPolicy-members.html |  128 +
 ...ridfire_1_1policy_1_1CNOIVChainPolicy.html |  273 ++
 ...sgridfire_1_1policy_1_1CNOIVChainPolicy.js |    6 +
 ...olicy_1_1CNOIVChainPolicy__coll__graph.map |   29 +
 ...olicy_1_1CNOIVChainPolicy__coll__graph.md5 |    1 +
 ...olicy_1_1CNOIVChainPolicy__coll__graph.svg |  360 ++
 ...y_1_1CNOIVChainPolicy__coll__graph_org.svg |  278 ++
 ...cy_1_1CNOIVChainPolicy__inherit__graph.map |    7 +
 ...cy_1_1CNOIVChainPolicy__inherit__graph.md5 |    1 +
 ...cy_1_1CNOIVChainPolicy__inherit__graph.svg |   85 +
 ..._1CNOIVChainPolicy__inherit__graph_org.svg |   60 +
 ..._1policy_1_1HotCNOChainPolicy-members.html |  129 +
 ...idfire_1_1policy_1_1HotCNOChainPolicy.html |  251 ++
 ...gridfire_1_1policy_1_1HotCNOChainPolicy.js |    5 +
 ...licy_1_1HotCNOChainPolicy__coll__graph.map |   29 +
 ...licy_1_1HotCNOChainPolicy__coll__graph.md5 |    1 +
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 ..._1_1HotCNOChainPolicy__coll__graph_org.svg |  280 ++
 ...y_1_1HotCNOChainPolicy__inherit__graph.map |    7 +
 ...y_1_1HotCNOChainPolicy__inherit__graph.md5 |    1 +
 ...y_1_1HotCNOChainPolicy__inherit__graph.svg |   85 +
 ...1HotCNOChainPolicy__inherit__graph_org.svg |   60 +
 ...1policy_1_1HotCNOIChainPolicy-members.html |  128 +
 ...dfire_1_1policy_1_1HotCNOIChainPolicy.html |  273 ++
 ...ridfire_1_1policy_1_1HotCNOIChainPolicy.js |    6 +
 ...icy_1_1HotCNOIChainPolicy__coll__graph.map |   29 +
 ...icy_1_1HotCNOIChainPolicy__coll__graph.md5 |    1 +
 ...icy_1_1HotCNOIChainPolicy__coll__graph.svg |  360 ++
 ...1_1HotCNOIChainPolicy__coll__graph_org.svg |  278 ++
 ..._1_1HotCNOIChainPolicy__inherit__graph.map |    7 +
 ..._1_1HotCNOIChainPolicy__inherit__graph.md5 |    1 +
 ..._1_1HotCNOIChainPolicy__inherit__graph.svg |   85 +
 ...HotCNOIChainPolicy__inherit__graph_org.svg |   60 +
 ...policy_1_1HotCNOIIChainPolicy-members.html |  128 +
 ...fire_1_1policy_1_1HotCNOIIChainPolicy.html |  273 ++
 ...idfire_1_1policy_1_1HotCNOIIChainPolicy.js |    6 +
 ...cy_1_1HotCNOIIChainPolicy__coll__graph.map |   29 +
 ...cy_1_1HotCNOIIChainPolicy__coll__graph.md5 |    1 +
 ...cy_1_1HotCNOIIChainPolicy__coll__graph.svg |  360 ++
 ..._1HotCNOIIChainPolicy__coll__graph_org.svg |  278 ++
 ...1_1HotCNOIIChainPolicy__inherit__graph.map |    7 +
 ...1_1HotCNOIIChainPolicy__inherit__graph.md5 |    1 +
 ...1_1HotCNOIIChainPolicy__inherit__graph.svg |   85 +
 ...otCNOIIChainPolicy__inherit__graph_org.svg |   60 +
 ...olicy_1_1HotCNOIIIChainPolicy-members.html |  128 +
 ...ire_1_1policy_1_1HotCNOIIIChainPolicy.html |  273 ++
 ...dfire_1_1policy_1_1HotCNOIIIChainPolicy.js |    6 +
 ...y_1_1HotCNOIIIChainPolicy__coll__graph.map |   29 +
 ...y_1_1HotCNOIIIChainPolicy__coll__graph.md5 |    1 +
 ...y_1_1HotCNOIIIChainPolicy__coll__graph.svg |  360 ++
 ...1HotCNOIIIChainPolicy__coll__graph_org.svg |  278 ++
 ..._1HotCNOIIIChainPolicy__inherit__graph.map |    7 +
 ..._1HotCNOIIIChainPolicy__inherit__graph.md5 |    1 +
 ..._1HotCNOIIIChainPolicy__inherit__graph.svg |   85 +
 ...tCNOIIIChainPolicy__inherit__graph_org.svg |   60 +
 ...1policy_1_1MainSequencePolicy-members.html |  129 +
 ...dfire_1_1policy_1_1MainSequencePolicy.html |  762 ++++
 ...ridfire_1_1policy_1_1MainSequencePolicy.js |   21 +
 ...icy_1_1MainSequencePolicy__coll__graph.map |   27 +
 ...icy_1_1MainSequencePolicy__coll__graph.md5 |    1 +
 ...icy_1_1MainSequencePolicy__coll__graph.svg |  340 ++
 ...1_1MainSequencePolicy__coll__graph_org.svg |  258 ++
 ..._1_1MainSequencePolicy__inherit__graph.map |    5 +
 ..._1_1MainSequencePolicy__inherit__graph.md5 |    1 +
 ..._1_1MainSequencePolicy__inherit__graph.svg |   66 +
 ...MainSequencePolicy__inherit__graph_org.svg |   41 +
 ...inSequenceReactionChainPolicy-members.html |  129 +
 ...cy_1_1MainSequenceReactionChainPolicy.html |  249 ++
 ...licy_1_1MainSequenceReactionChainPolicy.js |    5 +
 ...quenceReactionChainPolicy__coll__graph.map |   29 +
 ...quenceReactionChainPolicy__coll__graph.md5 |    1 +
 ...quenceReactionChainPolicy__coll__graph.svg |  362 ++
 ...ceReactionChainPolicy__coll__graph_org.svg |  280 ++
 ...nceReactionChainPolicy__inherit__graph.map |    7 +
 ...nceReactionChainPolicy__inherit__graph.md5 |    1 +
 ...nceReactionChainPolicy__inherit__graph.svg |   85 +
 ...eactionChainPolicy__inherit__graph_org.svg |   60 +
 ...y_1_1MultiReactionChainPolicy-members.html |  128 +
 ...1_1policy_1_1MultiReactionChainPolicy.html |  764 ++++
 ...e_1_1policy_1_1MultiReactionChainPolicy.js |   20 +
 ...1MultiReactionChainPolicy__coll__graph.map |   27 +
 ...1MultiReactionChainPolicy__coll__graph.md5 |    1 +
 ...1MultiReactionChainPolicy__coll__graph.svg |  343 ++
 ...tiReactionChainPolicy__coll__graph_org.svg |  261 ++
 ...ltiReactionChainPolicy__inherit__graph.map |   13 +
 ...ltiReactionChainPolicy__inherit__graph.md5 |    1 +
 ...ltiReactionChainPolicy__inherit__graph.svg |  199 +
 ...eactionChainPolicy__inherit__graph_org.svg |  117 +
 ...re_1_1policy_1_1NetworkPolicy-members.html |  119 +
 ...ssgridfire_1_1policy_1_1NetworkPolicy.html |  457 +++
 ...lassgridfire_1_1policy_1_1NetworkPolicy.js |   12 +
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 ...olicy_1_1NetworkPolicy__inherit__graph.md5 |    1 +
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 ...re_1_1policy_1_1ProtonProtonChainPolicy.js |    6 +
 ..._1ProtonProtonChainPolicy__coll__graph.map |   30 +
 ..._1ProtonProtonChainPolicy__coll__graph.md5 |    1 +
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 ...rotonProtonChainPolicy__inherit__graph.md5 |    1 +
 ...rotonProtonChainPolicy__inherit__graph.svg |   85 +
 ...nProtonChainPolicy__inherit__graph_org.svg |   60 +
 ...y_1_1ProtonProtonIChainPolicy-members.html |  128 +
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 ...e_1_1policy_1_1ProtonProtonIChainPolicy.js |    6 +
 ...1ProtonProtonIChainPolicy__coll__graph.map |   29 +
 ...1ProtonProtonIChainPolicy__coll__graph.md5 |    1 +
 ...1ProtonProtonIChainPolicy__coll__graph.svg |  360 ++
 ...tonProtonIChainPolicy__coll__graph_org.svg |  278 ++
 ...otonProtonIChainPolicy__inherit__graph.map |    7 +
 ...otonProtonIChainPolicy__inherit__graph.md5 |    1 +
 ...otonProtonIChainPolicy__inherit__graph.svg |   85 +
 ...ProtonIChainPolicy__inherit__graph_org.svg |   60 +
 ..._1_1ProtonProtonIIChainPolicy-members.html |  128 +
 ..._1policy_1_1ProtonProtonIIChainPolicy.html |  272 ++
 ..._1_1policy_1_1ProtonProtonIIChainPolicy.js |    6 +
 ...ProtonProtonIIChainPolicy__coll__graph.map |   29 +
 ...ProtonProtonIIChainPolicy__coll__graph.md5 |    1 +
 ...ProtonProtonIIChainPolicy__coll__graph.svg |  360 ++
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 ...tonProtonIIChainPolicy__inherit__graph.svg |   85 +
 ...rotonIIChainPolicy__inherit__graph_org.svg |   60 +
 ...1_1ProtonProtonIIIChainPolicy-members.html |  128 +
 ...1policy_1_1ProtonProtonIIIChainPolicy.html |  272 ++
 ...1_1policy_1_1ProtonProtonIIIChainPolicy.js |    6 +
 ...rotonProtonIIIChainPolicy__coll__graph.map |   29 +
 ...rotonProtonIIIChainPolicy__coll__graph.md5 |    1 +
 ...rotonProtonIIIChainPolicy__coll__graph.svg |  360 ++
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 ...atureDependentChainPolicy__coll__graph.md5 |    1 +
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 ...pendentChainPolicy__inherit__graph_org.svg |  250 ++
 ...icy_1_1TripleAlphaChainPolicy-members.html |  128 +
 ...e_1_1policy_1_1TripleAlphaChainPolicy.html |  269 ++
 ...ire_1_1policy_1_1TripleAlphaChainPolicy.js |    6 +
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 ...1_1TripleAlphaChainPolicy__coll__graph.md5 |    1 +
 ...1_1TripleAlphaChainPolicy__coll__graph.svg |  360 ++
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 ...leAlphaChainPolicy__inherit__graph_org.svg |   60 +
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 ...k_1_1WeakRateInterpolator__coll__graph.map |   13 +
 ...k_1_1WeakRateInterpolator__coll__graph.md5 |    1 +
 ...k_1_1WeakRateInterpolator__coll__graph.svg |  148 +
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 ...rates_1_1weak_1_1WeakReaction-members.html |  154 +
 ...fire_1_1rates_1_1weak_1_1WeakReaction.html | 1770 ++++++++
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 ...es_1_1weak_1_1WeakReactionMap-members.html |  116 +
 ...e_1_1rates_1_1weak_1_1WeakReactionMap.html |  318 ++
 ...ire_1_1rates_1_1weak_1_1WeakReactionMap.js |    9 +
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 ..._1weak_1_1WeakReactionMap__coll__graph.md5 |    1 +
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 ...eak_1_1WeakReaction_1_1AtomicWeakRate.html |  618 +++
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 ...eaction_1_1AtomicWeakRate__coll__graph.md5 |    1 +
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 ...s_1_1weak_1_1WeakReaction__coll__graph.md5 |    1 +
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 ...e_1_1reaction_1_1LogicalReaclibReaction.js |   23 +
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 ...1_1LogicalReaclibReaction__coll__graph.md5 |    1 +
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 ...ogicalReaclibReaction__coll__graph_org.svg |  221 +
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 ...LogicalReaclibReaction__inherit__graph.md5 |    1 +
 ...LogicalReaclibReaction__inherit__graph.svg |   85 +
 ...calReaclibReaction__inherit__graph_org.svg |   60 +
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 ...idfire_1_1reaction_1_1ReaclibReaction.html | 1818 +++++++++
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 ...action_1_1ReaclibReaction__coll__graph.md5 |    1 +
 ...action_1_1ReaclibReaction__coll__graph.svg |  224 ++
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 ...ion_1_1ReaclibReaction__inherit__graph.md5 |    1 +
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 ..._1reaction_1_1ReactionSet__coll__graph.map |   18 +
 ..._1reaction_1_1ReactionSet__coll__graph.md5 |    1 +
 ..._1reaction_1_1ReactionSet__coll__graph.svg |  253 ++
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 ..._1reaction_1_1Reaction__inherit__graph.md5 |    1 +
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 ...re_1_1reaction_1_1WeakReaclibReaction.html |  420 ++
 ...fire_1_1reaction_1_1WeakReaclibReaction.js |    6 +
 ...on_1_1WeakReaclibReaction__coll__graph.map |   17 +
 ...on_1_1WeakReaclibReaction__coll__graph.md5 |    1 +
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 ...1_1WeakReaclibReaction__inherit__graph.md5 |    1 +
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 ...re_1_1screening_1_1BareScreeningModel.html |  436 ++
 ...fire_1_1screening_1_1BareScreeningModel.js |    7 +
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 ...ing_1_1BareScreeningModel__coll__graph.md5 |    1 +
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 ...BareScreeningModel__inherit__graph_org.svg |   41 +
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 ...screening_1_1IntermediateScreeningModel.js |    6 +
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 ...ntermediateScreeningModel__coll__graph.md5 |    1 +
 ...ntermediateScreeningModel__coll__graph.svg |   66 +
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 ...gridfire_1_1screening_1_1ScreeningModel.js |    7 +
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 ...ning_1_1ScreeningModel__inherit__graph.md5 |    1 +
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 ...ing_1_1WeakScreeningModel__coll__graph.md5 |    1 +
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 ...fire_1_1solver_1_1CVODESolverStrategy.html | 1504 +++++++
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 ...re_1_1solver_1_1NetworkSolverStrategy.html |  365 ++
 ...fire_1_1solver_1_1NetworkSolverStrategy.js |    9 +
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 ...idfire_1_1solver_1_1SolverContextBase.html |  194 +
 ...gridfire_1_1solver_1_1SolverContextBase.js |    5 +
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 ...r_1_1SolverContextBase__inherit__graph.md5 |    1 +
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 ..._1_1trigger_1_1AndTrigger__coll__graph.md5 |    1 +
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 ...rigger_1_1EveryNthTrigger__coll__graph.md5 |    1 +
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 ...ger_1_1EveryNthTrigger__inherit__graph.map |    7 +
 ...ger_1_1EveryNthTrigger__inherit__graph.md5 |    1 +
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 ..._1_1trigger_1_1LogicalTrigger-members.html |  120 +
 ...gridfire_1_1trigger_1_1LogicalTrigger.html |  160 +
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 ...trigger_1_1LogicalTrigger__coll__graph.md5 |    1 +
 ...trigger_1_1LogicalTrigger__coll__graph.svg |   67 +
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 ...gger_1_1LogicalTrigger__inherit__graph.md5 |    1 +
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 ..._1_1trigger_1_1NotTrigger__coll__graph.md5 |    1 +
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 ...ConvergenceFailureTrigger__coll__graph.md5 |    1 +
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 ..._1solver_1_1CVODE_1_1OffDiagonalTrigger.js |   19 +
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 ...olver_1_1CVODE_1_1SimulationTimeTrigger.js |   21 +
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 ..._1_1SimulationTimeTrigger__coll__graph.md5 |    1 +
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 ...ulationTimeTrigger__inherit__graph_org.svg |   44 +
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 ...r_1_1CVODE_1_1TimestepCollapseTrigger.html |  830 ++++
 ...ver_1_1CVODE_1_1TimestepCollapseTrigger.js |   23 +
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 ..._1TimestepCollapseTrigger__coll__graph.md5 |    1 +
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 ...mestepCollapseTrigger__coll__graph_org.svg |   63 +
 ...imestepCollapseTrigger__inherit__graph.map |    5 +
 ...imestepCollapseTrigger__inherit__graph.md5 |    1 +
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 docs/html/classgridfire_1_1utils_1_1Column.js |    9 +
 ...idfire_1_1utils_1_1ColumnBase-members.html |  114 +
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 ...assgridfire_1_1utils_1_1Table-members.html |  124 +
 .../html/classgridfire_1_1utils_1_1Table.html |  580 +++
 docs/html/classgridfire_1_1utils_1_1Table.js  |   16 +
 ...ridfire_1_1utils_1_1TableBase-members.html |  117 +
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+  <div class="headertitle"><div class="title">CVODE_solver_strategy.cpp File Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<div class="textblock"><code>#include &quot;<a class="el" href="CVODE__solver__strategy_8h.html">gridfire/solver/strategies/CVODE_solver_strategy.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="types_8h.html">gridfire/types/types.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="table__format_8h.html">gridfire/utils/table_format.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="dynamic__engine__diagnostics_8h.html">gridfire/engine/diagnostics/dynamic_engine_diagnostics.h</a>&quot;</code><br />
+<code>#include &quot;quill/LogMacros.h&quot;</code><br />
+<code>#include &quot;fourdst/composition/composition.h&quot;</code><br />
+<code>#include &lt;cstdint&gt;</code><br />
+<code>#include &lt;limits&gt;</code><br />
+<code>#include &lt;string&gt;</code><br />
+<code>#include &lt;unordered_map&gt;</code><br />
+<code>#include &lt;stdexcept&gt;</code><br />
+<code>#include &lt;algorithm&gt;</code><br />
+<code>#include &quot;fourdst/atomic/species.h&quot;</code><br />
+<code>#include &quot;fourdst/composition/exceptions/exceptions_composition.h&quot;</code><br />
+<code>#include &quot;<a class="el" href="engine__graph_8h.html">gridfire/engine/engine_graph.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="engine__types_8h.html">gridfire/engine/types/engine_types.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="engine__partitioning__trigger_8h.html">gridfire/solver/strategies/triggers/engine_partitioning_trigger.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="trigger__pprint_8h.html">gridfire/trigger/procedures/trigger_pprint.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="error__solver_8h.html">gridfire/exceptions/error_solver.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="sundials_8h.html">gridfire/utils/sundials.h</a>&quot;</code><br />
+</div><div class="textblock"><div class="dynheader">
+Include dependency graph for CVODE_solver_strategy.cpp:</div>
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+<tr class="memitem:namespacegridfire_1_1solver" id="r_namespacegridfire_1_1solver"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a></td></tr>
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+  <ul>
+    <li class="navelem"><a class="el" href="dir_68267d1309a1af8e8297ef4c3efbcdba.html">src</a></li><li class="navelem"><a class="el" href="dir_c85d3e3c5052e9ad9ce18c6863244a25.html">lib</a></li><li class="navelem"><a class="el" href="dir_4fd0dc9a50f7a53e22cb356c650f915e.html">solver</a></li><li class="navelem"><a class="el" href="dir_b0553efdd4ad7f265c0580564941af0c.html">strategies</a></li><li class="navelem"><a class="el" href="CVODE__solver__strategy_8cpp.html">CVODE_solver_strategy.cpp</a></li>
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+<div class="textblock"><code>#include &quot;<a class="el" href="strategy__abstract_8h.html">gridfire/solver/strategies/strategy_abstract.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="engine__abstract_8h.html">gridfire/engine/engine_abstract.h</a>&quot;</code><br />
+<code>#include &quot;<a class="el" href="types_8h.html">gridfire/types/types.h</a>&quot;</code><br />
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+<code>#include &quot;fourdst/atomic/atomicSpecies.h&quot;</code><br />
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+<code>#include &lt;tuple&gt;</code><br />
+<code>#include &lt;cvode/cvode.h&gt;</code><br />
+<code>#include &lt;sundials/sundials_types.h&gt;</code><br />
+<code>#include &lt;sundials/sundials_context.h&gt;</code><br />
+<code>#include &lt;sunmatrix/sunmatrix_dense.h&gt;</code><br />
+<code>#include &lt;sunlinsol/sunlinsol_dense.h&gt;</code><br />
+<code>#include &lt;nvector/nvector_serial.h&gt;</code><br />
+</div><div class="textblock"><div class="dynheader">
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+</div>
+</div><div class="textblock"><div class="dynheader">
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+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></td></tr>
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-<tr id="row_0_0_10_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1_network_priming_engine_view.html" target="_self">NetworkPrimingEngineView</a></td><td class="desc">Provides a view of a <a class="el" href="classgridfire_1_1engine_1_1_dynamic_engine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> filtered to reactions involving a specified priming species </td></tr>
-<tr id="row_0_0_11_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1_priming_report.html" target="_self">PrimingReport</a></td><td class="desc">Captures the result of a network priming operation </td></tr>
-<tr id="row_0_0_12_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1_reaction.html" target="_self">Reaction</a></td><td class="desc">Represents a single nuclear reaction from a specific data source </td></tr>
-<tr id="row_0_0_13_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1_reaction_set.html" target="_self">ReactionSet</a></td><td class="desc"></td></tr>
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-<tr id="row_0_1_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_1_" class="arrow" onclick="dynsection.toggleFolder('0_1_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1exceptions.html" target="_self">exceptions</a></td><td class="desc">Namespace for GridFire exception classes. All custom exceptions defined in GridFire inherit from std::exception and are organized within this namespace for clarity and modularity </td></tr>
-<tr id="row_0_1_0_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_bad_collection_error.html" target="_self">BadCollectionError</a></td><td class="desc">Exception for invalid composition collection in the engine </td></tr>
-<tr id="row_0_1_1_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_bad_r_h_s_engine_error.html" target="_self">BadRHSEngineError</a></td><td class="desc">Exception for errors in calculating the right-hand side (RHS) </td></tr>
-<tr id="row_0_1_2_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_c_v_o_d_e_solver_failure_error.html" target="_self">CVODESolverFailureError</a></td><td class="desc">Exception for failures in the CVODE solver </td></tr>
-<tr id="row_0_1_3_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_debug_exception.html" target="_self">DebugException</a></td><td class="desc">Exception class for debug-only errors </td></tr>
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-<tr id="row_0_1_6_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_grid_fire_error.html" target="_self">GridFireError</a></td><td class="desc">Base class for GridFire exceptions </td></tr>
-<tr id="row_0_1_7_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_hashing_error.html" target="_self">HashingError</a></td><td class="desc">Exception class for hashing-related errors in GridFire </td></tr>
-<tr id="row_0_1_8_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_ill_conditioned_jacobian_error.html" target="_self">IllConditionedJacobianError</a></td><td class="desc">Exception thrown when the Jacobian matrix is ill-conditioned </td></tr>
-<tr id="row_0_1_9_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_invalid_q_s_e_solution_error.html" target="_self">InvalidQSESolutionError</a></td><td class="desc">Exception for invalid QSE solution in the engine </td></tr>
-<tr id="row_0_1_10_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_jacobian_error.html" target="_self">JacobianError</a></td><td class="desc">Base class for Jacobian-related exceptions </td></tr>
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-<tr id="row_0_1_12_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_missing_base_reaction_error.html" target="_self">MissingBaseReactionError</a></td><td class="desc">Exception thrown when a required reaction is missing from the underlying database (e.g., REACLIB) </td></tr>
-<tr id="row_0_1_13_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_missing_key_reaction_error.html" target="_self">MissingKeyReactionError</a></td><td class="desc">Exception thrown when a constructed network fails to include a key reaction required by the policy </td></tr>
-<tr id="row_0_1_14_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_missing_seed_species_error.html" target="_self">MissingSeedSpeciesError</a></td><td class="desc">Exception thrown when a required seed species is not found in the initial composition </td></tr>
-<tr id="row_0_1_15_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_network_resized_error.html" target="_self">NetworkResizedError</a></td><td class="desc">Exception for errors during network resizing </td></tr>
-<tr id="row_0_1_16_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_policy_error.html" target="_self">PolicyError</a></td><td class="desc">Base class for all exceptions related to network policy operations </td></tr>
-<tr id="row_0_1_17_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_reaction_error.html" target="_self">ReactionError</a></td><td class="desc">Base class for all exceptions related to reaction operations </td></tr>
-<tr id="row_0_1_18_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_reaction_parsing_error.html" target="_self">ReactionParsingError</a></td><td class="desc"></td></tr>
-<tr id="row_0_1_19_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_singular_jacobian_error.html" target="_self">SingularJacobianError</a></td><td class="desc">Exception thrown when the Jacobian matrix is singular </td></tr>
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-<tr id="row_0_1_21_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1_stale_jacobian_error.html" target="_self">StaleJacobianError</a></td><td class="desc">Exception for stale Jacobian matrix access </td></tr>
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-<tr id="row_0_10_4_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html" target="_self">NotTrigger</a></td><td class="desc">Logical negation of a trigger </td></tr>
-<tr id="row_0_10_5_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html" target="_self">OrTrigger</a></td><td class="desc">Logical disjunction of two triggers with short-circuit evaluation </td></tr>
-<tr id="row_0_10_6_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html" target="_self">Trigger</a></td><td class="desc">Generic trigger interface for signaling events/conditions during integration </td></tr>
-<tr id="row_0_10_7_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html" target="_self">TriggerResult</a></td><td class="desc"></td></tr>
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+<tr id="row_0_0_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1AdaptiveEngineView_1_1ReactionFlow.html" target="_self">ReactionFlow</a></td><td class="desc">A struct to hold a reaction and its flow rate </td></tr>
+<tr id="row_0_0_1_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html" target="_self">DefinedEngineView</a></td><td class="desc"></td></tr>
+<tr id="row_0_0_2_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html" target="_self">DynamicEngine</a></td><td class="desc">Abstract class for engines supporting Jacobian and stoichiometry operations </td></tr>
+<tr id="row_0_0_3_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html" target="_self">EnergyDerivatives</a></td><td class="desc">Structure holding derivatives of energy generation rate with respect to T and rho </td></tr>
+<tr id="row_0_0_4_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1Engine.html" target="_self">Engine</a></td><td class="desc">Abstract base class for a reaction network engine </td></tr>
+<tr id="row_0_0_5_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1EngineView.html" target="_self">EngineView</a></td><td class="desc">Abstract base class for a "view" of a reaction network engine </td></tr>
+<tr id="row_0_0_6_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html" target="_self">FileDefinedEngineView</a></td><td class="desc"></td></tr>
+<tr id="row_0_0_7_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_0_7_" class="arrow" onclick="toggleFolder('0_0_7_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html" target="_self">GraphEngine</a></td><td class="desc">A reaction network engine that uses a graph-based representation </td></tr>
+<tr id="row_0_0_7_0_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html" target="_self">AtomicReverseRate</a></td><td class="desc"></td></tr>
+<tr id="row_0_0_7_1_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1GraphEngine_1_1constants.html" target="_self">constants</a></td><td class="desc"></td></tr>
+<tr id="row_0_0_7_2_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1GraphEngine_1_1PrecomputedReaction.html" target="_self">PrecomputedReaction</a></td><td class="desc"></td></tr>
+<tr id="row_0_0_8_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_0_8_" class="arrow" onclick="toggleFolder('0_0_8_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html" target="_self">MultiscalePartitioningEngineView</a></td><td class="desc">An engine view that partitions the reaction network into multiple groups based on timescales </td></tr>
+<tr id="row_0_0_8_0_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1FluxValidationResult.html" target="_self">FluxValidationResult</a></td><td class="desc"></td></tr>
+<tr id="row_0_0_8_1_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html" target="_self">QSEGroup</a></td><td class="desc">Struct representing a QSE group </td></tr>
+<tr id="row_0_0_8_2_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_0_0_8_2_" class="arrow" onclick="toggleFolder('0_0_8_2_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html" target="_self">QSESolver</a></td><td class="desc"></td></tr>
+<tr id="row_0_0_8_2_0_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver_1_1UserData.html" target="_self">UserData</a></td><td class="desc"></td></tr>
+<tr id="row_0_0_9_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html" target="_self">NetworkJacobian</a></td><td class="desc">A wrapper class for handling the network Jacobian matrix </td></tr>
+<tr id="row_0_0_10_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html" target="_self">NetworkPrimingEngineView</a></td><td class="desc">Provides a view of a <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> filtered to reactions involving a specified priming species </td></tr>
+<tr id="row_0_0_11_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html" target="_self">PrimingReport</a></td><td class="desc">Captures the result of a network priming operation </td></tr>
+<tr id="row_0_0_12_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html" target="_self">StepDerivatives</a></td><td class="desc">Structure holding derivatives and energy generation for a network step </td></tr>
+<tr id="row_0_1_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_1_" class="arrow" onclick="toggleFolder('0_1_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1exceptions.html" target="_self">exceptions</a></td><td class="desc">Namespace for GridFire exception classes. All custom exceptions defined in GridFire inherit from std::exception and are organized within this namespace for clarity and modularity </td></tr>
+<tr id="row_0_1_0_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1BadCollectionError.html" target="_self">BadCollectionError</a></td><td class="desc">Exception for invalid composition collection in the engine </td></tr>
+<tr id="row_0_1_1_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1BadRHSEngineError.html" target="_self">BadRHSEngineError</a></td><td class="desc">Exception for errors in calculating the right-hand side (RHS) </td></tr>
+<tr id="row_0_1_2_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1CVODESolverFailureError.html" target="_self">CVODESolverFailureError</a></td><td class="desc">Exception for failures in the CVODE solver </td></tr>
+<tr id="row_0_1_3_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1DebugException.html" target="_self">DebugException</a></td><td class="desc">Exception class for debug-only errors </td></tr>
+<tr id="row_0_1_4_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1EngineError.html" target="_self">EngineError</a></td><td class="desc">Base class for engine-related exceptions </td></tr>
+<tr id="row_0_1_5_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1FailedToPartitionEngineError.html" target="_self">FailedToPartitionEngineError</a></td><td class="desc">Exception for failures in partitioning the engine </td></tr>
+<tr id="row_0_1_6_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html" target="_self">GridFireError</a></td><td class="desc">Base class for GridFire exceptions </td></tr>
+<tr id="row_0_1_7_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1HashingError.html" target="_self">HashingError</a></td><td class="desc">Exception class for hashing-related errors in GridFire </td></tr>
+<tr id="row_0_1_8_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1IllConditionedJacobianError.html" target="_self">IllConditionedJacobianError</a></td><td class="desc">Exception thrown when the Jacobian matrix is ill-conditioned </td></tr>
+<tr id="row_0_1_9_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1InvalidQSESolutionError.html" target="_self">InvalidQSESolutionError</a></td><td class="desc">Exception for invalid QSE solution in the engine </td></tr>
+<tr id="row_0_1_10_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1JacobianError.html" target="_self">JacobianError</a></td><td class="desc">Base class for Jacobian-related exceptions </td></tr>
+<tr id="row_0_1_11_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1KINSolSolverFailureError.html" target="_self">KINSolSolverFailureError</a></td><td class="desc">Exception for failures in the KINSOL solver </td></tr>
+<tr id="row_0_1_12_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1MissingBaseReactionError.html" target="_self">MissingBaseReactionError</a></td><td class="desc">Exception thrown when a required reaction is missing from the underlying database (e.g., REACLIB) </td></tr>
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+<tr id="row_0_3_4_1_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1InterpolationPoints.html" target="_self">InterpolationPoints</a></td><td class="desc"></td></tr>
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+<tr id="row_0_4_3_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1policy_1_1CNOIIIChainPolicy.html" target="_self">CNOIIIChainPolicy</a></td><td class="desc">CNO III Chain Policy </td></tr>
+<tr id="row_0_4_4_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html" target="_self">CNOIVChainPolicy</a></td><td class="desc">CNO IV Chain Policy </td></tr>
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+<tr id="row_0_4_14_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html" target="_self">ProtonProtonIChainPolicy</a></td><td class="desc">Proton-Proton I Chain Policy </td></tr>
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+<tr id="row_0_4_19_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html" target="_self">TripleAlphaChainPolicy</a></td><td class="desc">Triple-Alpha Chain Policy </td></tr>
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+<tr id="row_0_5_0_1_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1InterpolationError.html" target="_self">InterpolationError</a></td><td class="desc">Interpolation error with optional per-axis bounds details </td></tr>
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-        [ "ProtonProtonIIChainPolicy", "classgridfire_1_1policy_1_1_proton_proton_i_i_chain_policy.html", "classgridfire_1_1policy_1_1_proton_proton_i_i_chain_policy" ],
-        [ "ProtonProtonIIIChainPolicy", "classgridfire_1_1policy_1_1_proton_proton_i_i_i_chain_policy.html", "classgridfire_1_1policy_1_1_proton_proton_i_i_i_chain_policy" ],
-        [ "ReactionChainPolicy", "classgridfire_1_1policy_1_1_reaction_chain_policy.html", "classgridfire_1_1policy_1_1_reaction_chain_policy" ],
-        [ "TemperatureDependentChainPolicy", "classgridfire_1_1policy_1_1_temperature_dependent_chain_policy.html", "classgridfire_1_1policy_1_1_temperature_dependent_chain_policy" ],
-        [ "TripleAlphaChainPolicy", "classgridfire_1_1policy_1_1_triple_alpha_chain_policy.html", "classgridfire_1_1policy_1_1_triple_alpha_chain_policy" ]
+        [ "CNOChainPolicy", "classgridfire_1_1policy_1_1CNOChainPolicy.html", "classgridfire_1_1policy_1_1CNOChainPolicy" ],
+        [ "CNOIChainPolicy", "classgridfire_1_1policy_1_1CNOIChainPolicy.html", "classgridfire_1_1policy_1_1CNOIChainPolicy" ],
+        [ "CNOIIChainPolicy", "classgridfire_1_1policy_1_1CNOIIChainPolicy.html", "classgridfire_1_1policy_1_1CNOIIChainPolicy" ],
+        [ "CNOIIIChainPolicy", "classgridfire_1_1policy_1_1CNOIIIChainPolicy.html", "classgridfire_1_1policy_1_1CNOIIIChainPolicy" ],
+        [ "CNOIVChainPolicy", "classgridfire_1_1policy_1_1CNOIVChainPolicy.html", "classgridfire_1_1policy_1_1CNOIVChainPolicy" ],
+        [ "HotCNOChainPolicy", "classgridfire_1_1policy_1_1HotCNOChainPolicy.html", "classgridfire_1_1policy_1_1HotCNOChainPolicy" ],
+        [ "HotCNOIChainPolicy", "classgridfire_1_1policy_1_1HotCNOIChainPolicy.html", "classgridfire_1_1policy_1_1HotCNOIChainPolicy" ],
+        [ "HotCNOIIChainPolicy", "classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html", "classgridfire_1_1policy_1_1HotCNOIIChainPolicy" ],
+        [ "HotCNOIIIChainPolicy", "classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html", "classgridfire_1_1policy_1_1HotCNOIIIChainPolicy" ],
+        [ "MainSequencePolicy", "classgridfire_1_1policy_1_1MainSequencePolicy.html", "classgridfire_1_1policy_1_1MainSequencePolicy" ],
+        [ "MainSequenceReactionChainPolicy", "classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html", "classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy" ],
+        [ "MultiReactionChainPolicy", "classgridfire_1_1policy_1_1MultiReactionChainPolicy.html", "classgridfire_1_1policy_1_1MultiReactionChainPolicy" ],
+        [ "NetworkPolicy", "classgridfire_1_1policy_1_1NetworkPolicy.html", "classgridfire_1_1policy_1_1NetworkPolicy" ],
+        [ "ProtonProtonChainPolicy", "classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html", "classgridfire_1_1policy_1_1ProtonProtonChainPolicy" ],
+        [ "ProtonProtonIChainPolicy", "classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html", "classgridfire_1_1policy_1_1ProtonProtonIChainPolicy" ],
+        [ "ProtonProtonIIChainPolicy", "classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html", "classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy" ],
+        [ "ProtonProtonIIIChainPolicy", "classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html", "classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy" ],
+        [ "ReactionChainPolicy", "classgridfire_1_1policy_1_1ReactionChainPolicy.html", "classgridfire_1_1policy_1_1ReactionChainPolicy" ],
+        [ "TemperatureDependentChainPolicy", "classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html", "classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" ],
+        [ "TripleAlphaChainPolicy", "classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html", "classgridfire_1_1policy_1_1TripleAlphaChainPolicy" ]
       ] ],
       [ "rates", "namespacegridfire_1_1rates.html", [
         [ "weak", "namespacegridfire_1_1rates_1_1weak.html", [
-          [ "BoundsErrorInfo", "structgridfire_1_1rates_1_1weak_1_1_bounds_error_info.html", "structgridfire_1_1rates_1_1weak_1_1_bounds_error_info" ],
-          [ "InterpolationError", "structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html", "structgridfire_1_1rates_1_1weak_1_1_interpolation_error" ],
-          [ "IsotopeGrid", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid" ],
-          [ "RateDataRow", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row" ],
-          [ "WeakRateDerivatives", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives" ],
-          [ "WeakRateInterpolator", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator" ],
-          [ "WeakRatePayload", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload" ],
-          [ "WeakReaction", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction" ],
-          [ "WeakReactionEntry", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry" ],
-          [ "WeakReactionMap", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map" ]
+          [ "BoundsErrorInfo", "structgridfire_1_1rates_1_1weak_1_1BoundsErrorInfo.html", "structgridfire_1_1rates_1_1weak_1_1BoundsErrorInfo" ],
+          [ "InterpolationError", "structgridfire_1_1rates_1_1weak_1_1InterpolationError.html", "structgridfire_1_1rates_1_1weak_1_1InterpolationError" ],
+          [ "IsotopeGrid", "structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html", "structgridfire_1_1rates_1_1weak_1_1IsotopeGrid" ],
+          [ "RateDataRow", "structgridfire_1_1rates_1_1weak_1_1RateDataRow.html", "structgridfire_1_1rates_1_1weak_1_1RateDataRow" ],
+          [ "WeakRateDerivatives", "structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives.html", "structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives" ],
+          [ "WeakRateInterpolator", "classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html", "classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator" ],
+          [ "WeakRatePayload", "structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html", "structgridfire_1_1rates_1_1weak_1_1WeakRatePayload" ],
+          [ "WeakReaction", "classgridfire_1_1rates_1_1weak_1_1WeakReaction.html", "classgridfire_1_1rates_1_1weak_1_1WeakReaction" ],
+          [ "WeakReactionEntry", "structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html", "structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry" ],
+          [ "WeakReactionMap", "classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html", "classgridfire_1_1rates_1_1weak_1_1WeakReactionMap" ]
         ] ]
       ] ],
       [ "reaclib", "namespacegridfire_1_1reaclib.html", [
-        [ "ReactionRecord", "structgridfire_1_1reaclib_1_1_reaction_record.html", "structgridfire_1_1reaclib_1_1_reaction_record" ]
+        [ "ReactionRecord", "structgridfire_1_1reaclib_1_1ReactionRecord.html", "structgridfire_1_1reaclib_1_1ReactionRecord" ]
       ] ],
       [ "reaction", "namespacegridfire_1_1reaction.html", [
-        [ "LogicalReaclibReaction", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html", "classgridfire_1_1reaction_1_1_logical_reaclib_reaction" ],
-        [ "RateCoefficientSet", "structgridfire_1_1reaction_1_1_rate_coefficient_set.html", "structgridfire_1_1reaction_1_1_rate_coefficient_set" ],
-        [ "ReaclibReaction", "classgridfire_1_1reaction_1_1_reaclib_reaction.html", "classgridfire_1_1reaction_1_1_reaclib_reaction" ],
-        [ "Reaction", "classgridfire_1_1reaction_1_1_reaction.html", "classgridfire_1_1reaction_1_1_reaction" ],
-        [ "ReactionSet", "classgridfire_1_1reaction_1_1_reaction_set.html", "classgridfire_1_1reaction_1_1_reaction_set" ],
-        [ "WeakReaclibReaction", "classgridfire_1_1reaction_1_1_weak_reaclib_reaction.html", "classgridfire_1_1reaction_1_1_weak_reaclib_reaction" ]
+        [ "LogicalReaclibReaction", "classgridfire_1_1reaction_1_1LogicalReaclibReaction.html", "classgridfire_1_1reaction_1_1LogicalReaclibReaction" ],
+        [ "RateCoefficientSet", "structgridfire_1_1reaction_1_1RateCoefficientSet.html", "structgridfire_1_1reaction_1_1RateCoefficientSet" ],
+        [ "ReaclibReaction", "classgridfire_1_1reaction_1_1ReaclibReaction.html", "classgridfire_1_1reaction_1_1ReaclibReaction" ],
+        [ "Reaction", "classgridfire_1_1reaction_1_1Reaction.html", "classgridfire_1_1reaction_1_1Reaction" ],
+        [ "ReactionSet", "classgridfire_1_1reaction_1_1ReactionSet.html", "classgridfire_1_1reaction_1_1ReactionSet" ],
+        [ "WeakReaclibReaction", "classgridfire_1_1reaction_1_1WeakReaclibReaction.html", "classgridfire_1_1reaction_1_1WeakReaclibReaction" ]
       ] ],
       [ "screening", "namespacegridfire_1_1screening.html", [
-        [ "BareScreeningModel", "classgridfire_1_1screening_1_1_bare_screening_model.html", "classgridfire_1_1screening_1_1_bare_screening_model" ],
-        [ "IntermediateScreeningModel", "classgridfire_1_1screening_1_1_intermediate_screening_model.html", "classgridfire_1_1screening_1_1_intermediate_screening_model" ],
-        [ "ScreeningModel", "classgridfire_1_1screening_1_1_screening_model.html", "classgridfire_1_1screening_1_1_screening_model" ],
-        [ "WeakScreeningModel", "classgridfire_1_1screening_1_1_weak_screening_model.html", "classgridfire_1_1screening_1_1_weak_screening_model" ]
+        [ "BareScreeningModel", "classgridfire_1_1screening_1_1BareScreeningModel.html", "classgridfire_1_1screening_1_1BareScreeningModel" ],
+        [ "IntermediateScreeningModel", "classgridfire_1_1screening_1_1IntermediateScreeningModel.html", "classgridfire_1_1screening_1_1IntermediateScreeningModel" ],
+        [ "ScreeningModel", "classgridfire_1_1screening_1_1ScreeningModel.html", "classgridfire_1_1screening_1_1ScreeningModel" ],
+        [ "WeakScreeningModel", "classgridfire_1_1screening_1_1WeakScreeningModel.html", "classgridfire_1_1screening_1_1WeakScreeningModel" ]
       ] ],
       [ "solver", "namespacegridfire_1_1solver.html", [
-        [ "CVODESolverStrategy", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy" ],
-        [ "NetworkSolverStrategy", "classgridfire_1_1solver_1_1_network_solver_strategy.html", "classgridfire_1_1solver_1_1_network_solver_strategy" ],
-        [ "SolverContextBase", "classgridfire_1_1solver_1_1_solver_context_base.html", "classgridfire_1_1solver_1_1_solver_context_base" ]
+        [ "CVODESolverStrategy", "classgridfire_1_1solver_1_1CVODESolverStrategy.html", "classgridfire_1_1solver_1_1CVODESolverStrategy" ],
+        [ "NetworkSolverStrategy", "classgridfire_1_1solver_1_1NetworkSolverStrategy.html", "classgridfire_1_1solver_1_1NetworkSolverStrategy" ],
+        [ "SolverContextBase", "classgridfire_1_1solver_1_1SolverContextBase.html", "classgridfire_1_1solver_1_1SolverContextBase" ]
       ] ],
       [ "trigger", "namespacegridfire_1_1trigger.html", [
         [ "solver", "namespacegridfire_1_1trigger_1_1solver.html", [
-          [ "CVODE", "namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html", [
-            [ "ConvergenceFailureTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger" ],
-            [ "OffDiagonalTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger" ],
-            [ "SimulationTimeTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger" ],
-            [ "TimestepCollapseTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger" ]
+          [ "CVODE", "namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html", [
+            [ "ConvergenceFailureTrigger", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger" ],
+            [ "OffDiagonalTrigger", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger" ],
+            [ "SimulationTimeTrigger", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger" ],
+            [ "TimestepCollapseTrigger", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger" ]
           ] ]
         ] ],
-        [ "AndTrigger", "classgridfire_1_1trigger_1_1_and_trigger.html", "classgridfire_1_1trigger_1_1_and_trigger" ],
-        [ "EveryNthTrigger", "classgridfire_1_1trigger_1_1_every_nth_trigger.html", "classgridfire_1_1trigger_1_1_every_nth_trigger" ],
-        [ "LogicalTrigger", "classgridfire_1_1trigger_1_1_logical_trigger.html", null ],
-        [ "NotTrigger", "classgridfire_1_1trigger_1_1_not_trigger.html", "classgridfire_1_1trigger_1_1_not_trigger" ],
-        [ "OrTrigger", "classgridfire_1_1trigger_1_1_or_trigger.html", "classgridfire_1_1trigger_1_1_or_trigger" ],
-        [ "Trigger", "classgridfire_1_1trigger_1_1_trigger.html", "classgridfire_1_1trigger_1_1_trigger" ],
-        [ "TriggerResult", "structgridfire_1_1trigger_1_1_trigger_result.html", "structgridfire_1_1trigger_1_1_trigger_result" ]
+        [ "AndTrigger", "classgridfire_1_1trigger_1_1AndTrigger.html", "classgridfire_1_1trigger_1_1AndTrigger" ],
+        [ "EveryNthTrigger", "classgridfire_1_1trigger_1_1EveryNthTrigger.html", "classgridfire_1_1trigger_1_1EveryNthTrigger" ],
+        [ "LogicalTrigger", "classgridfire_1_1trigger_1_1LogicalTrigger.html", null ],
+        [ "NotTrigger", "classgridfire_1_1trigger_1_1NotTrigger.html", "classgridfire_1_1trigger_1_1NotTrigger" ],
+        [ "OrTrigger", "classgridfire_1_1trigger_1_1OrTrigger.html", "classgridfire_1_1trigger_1_1OrTrigger" ],
+        [ "Trigger", "classgridfire_1_1trigger_1_1Trigger.html", "classgridfire_1_1trigger_1_1Trigger" ],
+        [ "TriggerResult", "structgridfire_1_1trigger_1_1TriggerResult.html", "structgridfire_1_1trigger_1_1TriggerResult" ]
       ] ],
       [ "utils", "namespacegridfire_1_1utils.html", [
-        [ "Column", "classgridfire_1_1utils_1_1_column.html", "classgridfire_1_1utils_1_1_column" ],
-        [ "ColumnBase", "classgridfire_1_1utils_1_1_column_base.html", "classgridfire_1_1utils_1_1_column_base" ],
-        [ "Table", "classgridfire_1_1utils_1_1_table.html", "classgridfire_1_1utils_1_1_table" ],
-        [ "TableBase", "classgridfire_1_1utils_1_1_table_base.html", "classgridfire_1_1utils_1_1_table_base" ]
+        [ "Column", "classgridfire_1_1utils_1_1Column.html", "classgridfire_1_1utils_1_1Column" ],
+        [ "ColumnBase", "classgridfire_1_1utils_1_1ColumnBase.html", "classgridfire_1_1utils_1_1ColumnBase" ],
+        [ "Table", "classgridfire_1_1utils_1_1Table.html", "classgridfire_1_1utils_1_1Table" ],
+        [ "TableBase", "classgridfire_1_1utils_1_1TableBase.html", "classgridfire_1_1utils_1_1TableBase" ]
       ] ],
-      [ "NetIn", "structgridfire_1_1_net_in.html", "structgridfire_1_1_net_in" ],
-      [ "NetOut", "structgridfire_1_1_net_out.html", "structgridfire_1_1_net_out" ]
+      [ "NetIn", "structgridfire_1_1NetIn.html", "structgridfire_1_1NetIn" ],
+      [ "NetOut", "structgridfire_1_1NetOut.html", "structgridfire_1_1NetOut" ]
     ] ],
     [ "gridfire_mod", "namespacegridfire__mod.html", [
       [ "gf_construct_engine_from_policy", "interfacegridfire__mod_1_1gf__construct__engine__from__policy.html", "interfacegridfire__mod_1_1gf__construct__engine__from__policy" ],
@@ -159,22 +157,22 @@ var annotated_dup =
       [ "gridfire", "structgridfire__mod_1_1gridfire.html", "structgridfire__mod_1_1gridfire" ]
     ] ],
     [ "std", "namespacestd.html", [
-      [ "formatter< gridfire::engine::NetworkJacobian >", "structstd_1_1formatter_3_01gridfire_1_1engine_1_1_network_jacobian_01_4.html", "structstd_1_1formatter_3_01gridfire_1_1engine_1_1_network_jacobian_01_4" ],
-      [ "hash< gridfire::rates::weak::TableAxes >", "structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4.html", "structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4" ],
-      [ "hash< gridfire::reaction::Reaction >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4" ],
-      [ "hash< gridfire::reaction::ReactionSet >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4" ]
+      [ "formatter< gridfire::engine::NetworkJacobian >", "structstd_1_1formatter_3_01gridfire_1_1engine_1_1NetworkJacobian_01_4.html", "structstd_1_1formatter_3_01gridfire_1_1engine_1_1NetworkJacobian_01_4" ],
+      [ "hash< gridfire::rates::weak::TableAxes >", "structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1TableAxes_01_4.html", "structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1TableAxes_01_4" ],
+      [ "hash< gridfire::reaction::Reaction >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1Reaction_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1Reaction_01_4" ],
+      [ "hash< gridfire::reaction::ReactionSet >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1ReactionSet_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1ReactionSet_01_4" ]
     ] ],
-    [ "GridFireContext", "struct_grid_fire_context.html", "struct_grid_fire_context" ],
-    [ "PyDynamicEngine", "class_py_dynamic_engine.html", "class_py_dynamic_engine" ],
-    [ "PyDynamicEngineView", "class_py_dynamic_engine_view.html", "class_py_dynamic_engine_view" ],
-    [ "PyDynamicNetworkSolverStrategy", "class_py_dynamic_network_solver_strategy.html", "class_py_dynamic_network_solver_strategy" ],
-    [ "PyEngine", "class_py_engine.html", "class_py_engine" ],
-    [ "PyEngineView", "class_py_engine_view.html", "class_py_engine_view" ],
-    [ "PyNetworkFileParser", "class_py_network_file_parser.html", "class_py_network_file_parser" ],
-    [ "PyNetworkPolicy", "class_py_network_policy.html", "class_py_network_policy" ],
-    [ "PyPartitionFunction", "class_py_partition_function.html", "class_py_partition_function" ],
-    [ "PyReactionChainPolicy", "class_py_reaction_chain_policy.html", "class_py_reaction_chain_policy" ],
-    [ "PyScreening", "class_py_screening.html", "class_py_screening" ],
-    [ "PySolverContextBase", "class_py_solver_context_base.html", "class_py_solver_context_base" ],
-    [ "SolverPluginInterface", "class_solver_plugin_interface.html", "class_solver_plugin_interface" ]
+    [ "GridFireContext", "structGridFireContext.html", "structGridFireContext" ],
+    [ "PyDynamicEngine", "classPyDynamicEngine.html", "classPyDynamicEngine" ],
+    [ "PyDynamicEngineView", "classPyDynamicEngineView.html", "classPyDynamicEngineView" ],
+    [ "PyDynamicNetworkSolverStrategy", "classPyDynamicNetworkSolverStrategy.html", "classPyDynamicNetworkSolverStrategy" ],
+    [ "PyEngine", "classPyEngine.html", "classPyEngine" ],
+    [ "PyEngineView", "classPyEngineView.html", "classPyEngineView" ],
+    [ "PyNetworkFileParser", "classPyNetworkFileParser.html", "classPyNetworkFileParser" ],
+    [ "PyNetworkPolicy", "classPyNetworkPolicy.html", "classPyNetworkPolicy" ],
+    [ "PyPartitionFunction", "classPyPartitionFunction.html", "classPyPartitionFunction" ],
+    [ "PyReactionChainPolicy", "classPyReactionChainPolicy.html", "classPyReactionChainPolicy" ],
+    [ "PyScreening", "classPyScreening.html", "classPyScreening" ],
+    [ "PySolverContextBase", "classPySolverContextBase.html", "classPySolverContextBase" ],
+    [ "SolverPluginInterface", "classSolverPluginInterface.html", "classSolverPluginInterface" ]
 ];
\ No newline at end of file
diff --git a/docs/html/bindings_8cpp.html b/docs/html/bindings_8cpp.html
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 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="namespaces" name="namespaces"></a>
 Namespaces</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="memitem:namespacegridfire" id="r_namespacegridfire"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a></td></tr>
+<tr class="memitem:namespacegridfire_1_1policy" id="r_namespacegridfire_1_1policy"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a></td></tr>
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 </table>
 <a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
 <div class="textblock"><p>Concrete implementations of ReactionChainPolicy for key stellar reaction chains. </p>
 <p>This file provides concrete policies for fundamental nuclear reaction chains, such as the Proton-Proton chain and the CNO cycle. These policies inherit from ReactionChainPolicy (see <code><a class="el" href="policy__abstract_8h.html" title="Abstract policy interfaces used to construct reaction networks (DynamicEngine) from seed compositions...">policy_abstract.h</a></code>) and provide a pre-defined set of reactions.</p>
 <p>They are typically used by higher-level NetworkPolicy implementations (e.g., <code>MainSequencePolicy</code> in <code><a class="el" href="stellar__policy_8h.html" title="High-level concrete NetworkPolicy for specific stellar environments.">stellar_policy.h</a></code>) to compose a complete set of required reactions for a particular stellar environment.</p>
-<dl class="section note"><dt>Note</dt><dd>Constructors for these policies may throw <code><a class="el" href="classgridfire_1_1exceptions_1_1_missing_base_reaction_error.html" title="Exception thrown when a required reaction is missing from the underlying database (e....">gridfire::exceptions::MissingBaseReactionError</a></code> if a required reaction is not found in the underlying REACLIB database. This usually indicates an issue with the GridFire installation or the bundled reaction data. </dd></dl>
+<dl class="section note"><dt>Note</dt><dd>Constructors for these policies may throw <code><a class="el" href="classgridfire_1_1exceptions_1_1MissingBaseReactionError.html" title="Exception thrown when a required reaction is missing from the underlying database (e....">gridfire::exceptions::MissingBaseReactionError</a></code> if a required reaction is not found in the underlying REACLIB database. This usually indicates an issue with the GridFire installation or the bundled reaction data. </dd></dl>
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <div class="headertitle"><div class="title">PyDynamicEngine Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classPyDynamicEngine.html#a6832a7898da51017a20f578e33cba729">calculateEpsDerivatives</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classPyDynamicEngine.html#a8facba88b6df6e016ce53a0ff3cff125">calculateMolarReactionFlow</a>(const gridfire::reaction::Reaction &amp;reaction, const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classPyDynamicEngine.html#aac1f2005c0a58befc4e01627c9357924">calculateRHSAndEnergy</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classPyDynamicEngine.html#a239826d90cb5db236e68230f7ac84bcb">collectComposition</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classPyDynamicEngine.html#a298f700c647d2c3973d2a35d370c823e">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classPyDynamicEngine.html#a2b1c054b250abccc2af9a7275c68df4a">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const std::vector&lt; fourdst::atomic::Species &gt; &amp;activeSpecies) const override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classPyDynamicEngine.html#a204643754cac3cf37c550ecd32f659fe">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const gridfire::engine::SparsityPattern &amp;sparsityPattern) const override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classPyDynamicEngine.html#a2066649ca11a869c054079ea12d8d0e9">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classPyDynamicEngine.html#a541cf022fe3253279f8f1309c10556d7">getDepth</a>() const override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classPyDynamicEngine.html#a1d5143640666631501cf229bc491516e">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classPyDynamicEngine.html#afc745e7ab5da5d8b3cf916044515cd7d">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classPyDynamicEngine.html#ab4cfdca5e15957c5cef75ffa6dedeee5">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classPyDynamicEngine.html#a8d34faa3d6ea804a3467979858d33535">getSpeciesDestructionTimescales</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classPyDynamicEngine.html#a95d10a7b240d543a1bc6c67ddf2dc8e0">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classPyDynamicEngine.html#a2947824dca9662e113153de5c6516609">getSpeciesStatus</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classPyDynamicEngine.html#a71678a567bb0cedd8a97aff9ceddd814">getSpeciesTimescales</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classPyDynamicEngine.html#a3dd5cf419f25e76e144af35df15a2067">getStoichiometryMatrixEntry</a>(const fourdst::atomic::Species &amp;species, const gridfire::reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classPyDynamicEngine.html#a55bf19ed7534a312a36faf74753f7b14">isStale</a>(const gridfire::NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classPyDynamicEngine.html#a2246382b1c98ba69cdb419bba63a6d03">m_species_cache</a></td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classPyDynamicEngine.html#a61bb4b430fe740cfb2c24e5cc673e4ac">mapNetInToMolarAbundanceVector</a>(const gridfire::NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classPyDynamicEngine.html#a6118af81e45d2850f7a2517891147274">primeEngine</a>(const gridfire::NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classPyDynamicEngine.html#a25e52496b36d731127603c31e9dcaa97">rebuild</a>(const fourdst::composition::CompositionAbstract &amp;comp, gridfire::engine::BuildDepthType depth) override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classPyDynamicEngine.html#af469cba3be850d53f659ec173f0eb4e4">setNetworkReactions</a>(const gridfire::reaction::ReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classPyDynamicEngine.html#afa3abfd612033336a656f092721c14ac">setScreeningModel</a>(gridfire::screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classPyDynamicEngine.html#af8e6a8cd44f278535d7bcc9a896d6da8">update</a>(const gridfire::NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html#af0ea99416c28933d364a872fc6aff556">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html">gridfire::engine::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classPyDynamicEngine-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">PyDynamicEngine Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;py_engine.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for PyDynamicEngine:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classPyDynamicEngine__inherit__graph.svg" width="198" height="198"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for PyDynamicEngine:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classPyDynamicEngine__coll__graph.svg" width="374" height="227"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:afc745e7ab5da5d8b3cf916044515cd7d" id="r_afc745e7ab5da5d8b3cf916044515cd7d"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#afc745e7ab5da5d8b3cf916044515cd7d">getNetworkSpecies</a> () const override</td></tr>
+<tr class="memdesc:afc745e7ab5da5d8b3cf916044515cd7d"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a> Implementation ///.  <br /></td></tr>
+<tr class="separator:afc745e7ab5da5d8b3cf916044515cd7d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aac1f2005c0a58befc4e01627c9357924" id="r_aac1f2005c0a58befc4e01627c9357924"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">gridfire::engine::StepDerivatives</a>&lt; double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">gridfire::engine::EngineStatus</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#aac1f2005c0a58befc4e01627c9357924">calculateRHSAndEnergy</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:aac1f2005c0a58befc4e01627c9357924"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the right-hand side (dY/dt) and energy generation.  <br /></td></tr>
+<tr class="separator:aac1f2005c0a58befc4e01627c9357924"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a298f700c647d2c3973d2a35d370c823e" id="r_a298f700c647d2c3973d2a35d370c823e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#a298f700c647d2c3973d2a35d370c823e">generateJacobianMatrix</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a298f700c647d2c3973d2a35d370c823e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate the Jacobian matrix for the current state.  <br /></td></tr>
+<tr class="separator:a298f700c647d2c3973d2a35d370c823e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2b1c054b250abccc2af9a7275c68df4a" id="r_a2b1c054b250abccc2af9a7275c68df4a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#a2b1c054b250abccc2af9a7275c68df4a">generateJacobianMatrix</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const std::vector&lt; fourdst::atomic::Species &gt; &amp;activeSpecies) const override</td></tr>
+<tr class="memdesc:a2b1c054b250abccc2af9a7275c68df4a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate the Jacobian matrix for the current state using a subset of active species.  <br /></td></tr>
+<tr class="separator:a2b1c054b250abccc2af9a7275c68df4a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a204643754cac3cf37c550ecd32f659fe" id="r_a204643754cac3cf37c550ecd32f659fe"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#a204643754cac3cf37c550ecd32f659fe">generateJacobianMatrix</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const <a class="el" href="namespacegridfire_1_1engine.html#af5175018d2d1e78a8826dd33ec6d675f">gridfire::engine::SparsityPattern</a> &amp;sparsityPattern) const override</td></tr>
+<tr class="memdesc:a204643754cac3cf37c550ecd32f659fe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate the Jacobian matrix for the current state with a specified sparsity pattern.  <br /></td></tr>
+<tr class="separator:a204643754cac3cf37c550ecd32f659fe"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2066649ca11a869c054079ea12d8d0e9" id="r_a2066649ca11a869c054079ea12d8d0e9"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#a2066649ca11a869c054079ea12d8d0e9">generateStoichiometryMatrix</a> () override</td></tr>
+<tr class="memdesc:a2066649ca11a869c054079ea12d8d0e9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate the stoichiometry matrix for the network.  <br /></td></tr>
+<tr class="separator:a2066649ca11a869c054079ea12d8d0e9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3dd5cf419f25e76e144af35df15a2067" id="r_a3dd5cf419f25e76e144af35df15a2067"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#a3dd5cf419f25e76e144af35df15a2067">getStoichiometryMatrixEntry</a> (const fourdst::atomic::Species &amp;species, const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a> &amp;reaction) const override</td></tr>
+<tr class="memdesc:a3dd5cf419f25e76e144af35df15a2067"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get an entry from the stoichiometry matrix.  <br /></td></tr>
+<tr class="separator:a3dd5cf419f25e76e144af35df15a2067"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8facba88b6df6e016ce53a0ff3cff125" id="r_a8facba88b6df6e016ce53a0ff3cff125"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#a8facba88b6df6e016ce53a0ff3cff125">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a> &amp;reaction, const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a8facba88b6df6e016ce53a0ff3cff125"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the molar reaction flow for a given reaction.  <br /></td></tr>
+<tr class="separator:a8facba88b6df6e016ce53a0ff3cff125"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1d5143640666631501cf229bc491516e" id="r_a1d5143640666631501cf229bc491516e"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#a1d5143640666631501cf229bc491516e">getNetworkReactions</a> () const override</td></tr>
+<tr class="memdesc:a1d5143640666631501cf229bc491516e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the set of logical reactions in the network.  <br /></td></tr>
+<tr class="separator:a1d5143640666631501cf229bc491516e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af469cba3be850d53f659ec173f0eb4e4" id="r_af469cba3be850d53f659ec173f0eb4e4"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#af469cba3be850d53f659ec173f0eb4e4">setNetworkReactions</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a> &amp;reactions) override</td></tr>
+<tr class="memdesc:af469cba3be850d53f659ec173f0eb4e4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set the reactions for the network.  <br /></td></tr>
+<tr class="separator:af469cba3be850d53f659ec173f0eb4e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a71678a567bb0cedd8a97aff9ceddd814"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a8d34faa3d6ea804a3467979858d33535"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:af8e6a8cd44f278535d7bcc9a896d6da8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update the internal state of the engine.  <br /></td></tr>
+<tr class="separator:af8e6a8cd44f278535d7bcc9a896d6da8"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a55bf19ed7534a312a36faf74753f7b14"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if the engine's internal state is stale.  <br /></td></tr>
+<tr class="separator:a55bf19ed7534a312a36faf74753f7b14"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afa3abfd612033336a656f092721c14ac" id="r_afa3abfd612033336a656f092721c14ac"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#afa3abfd612033336a656f092721c14ac">setScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">gridfire::screening::ScreeningType</a> model) override</td></tr>
+<tr class="memdesc:afa3abfd612033336a656f092721c14ac"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set the electron screening model.  <br /></td></tr>
+<tr class="separator:afa3abfd612033336a656f092721c14ac"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:ab4cfdca5e15957c5cef75ffa6dedeee5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the current electron screening model.  <br /></td></tr>
+<tr class="separator:ab4cfdca5e15957c5cef75ffa6dedeee5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a95d10a7b240d543a1bc6c67ddf2dc8e0" id="r_a95d10a7b240d543a1bc6c67ddf2dc8e0"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#a95d10a7b240d543a1bc6c67ddf2dc8e0">getSpeciesIndex</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a95d10a7b240d543a1bc6c67ddf2dc8e0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the index of a species in the network.  <br /></td></tr>
+<tr class="separator:a95d10a7b240d543a1bc6c67ddf2dc8e0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a61bb4b430fe740cfb2c24e5cc673e4ac" id="r_a61bb4b430fe740cfb2c24e5cc673e4ac"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#a61bb4b430fe740cfb2c24e5cc673e4ac">mapNetInToMolarAbundanceVector</a> (const <a class="el" href="structgridfire_1_1NetIn.html">gridfire::NetIn</a> &amp;netIn) const override</td></tr>
+<tr class="memdesc:a61bb4b430fe740cfb2c24e5cc673e4ac"><td class="mdescLeft">&#160;</td><td class="mdescRight">Map a NetIn object to a vector of molar abundances.  <br /></td></tr>
+<tr class="separator:a61bb4b430fe740cfb2c24e5cc673e4ac"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6118af81e45d2850f7a2517891147274" id="r_a6118af81e45d2850f7a2517891147274"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html">gridfire::engine::PrimingReport</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#a6118af81e45d2850f7a2517891147274">primeEngine</a> (const <a class="el" href="structgridfire_1_1NetIn.html">gridfire::NetIn</a> &amp;netIn) override</td></tr>
+<tr class="memdesc:a6118af81e45d2850f7a2517891147274"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prime the engine with initial conditions.  <br /></td></tr>
+<tr class="separator:a6118af81e45d2850f7a2517891147274"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a541cf022fe3253279f8f1309c10556d7" id="r_a541cf022fe3253279f8f1309c10556d7"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">gridfire::engine::BuildDepthType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#a541cf022fe3253279f8f1309c10556d7">getDepth</a> () const override</td></tr>
+<tr class="memdesc:a541cf022fe3253279f8f1309c10556d7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the depth of the network.  <br /></td></tr>
+<tr class="separator:a541cf022fe3253279f8f1309c10556d7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a25e52496b36d731127603c31e9dcaa97" id="r_a25e52496b36d731127603c31e9dcaa97"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#a25e52496b36d731127603c31e9dcaa97">rebuild</a> (const fourdst::composition::CompositionAbstract &amp;comp, <a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">gridfire::engine::BuildDepthType</a> depth) override</td></tr>
+<tr class="memdesc:a25e52496b36d731127603c31e9dcaa97"><td class="mdescLeft">&#160;</td><td class="mdescRight">Rebuild the network with a specified depth.  <br /></td></tr>
+<tr class="separator:a25e52496b36d731127603c31e9dcaa97"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6832a7898da51017a20f578e33cba729" id="r_a6832a7898da51017a20f578e33cba729"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html">gridfire::engine::EnergyDerivatives</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#a6832a7898da51017a20f578e33cba729">calculateEpsDerivatives</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a6832a7898da51017a20f578e33cba729"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the derivatives of the energy generation rate with respect to T and rho.  <br /></td></tr>
+<tr class="separator:a6832a7898da51017a20f578e33cba729"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a239826d90cb5db236e68230f7ac84bcb" id="r_a239826d90cb5db236e68230f7ac84bcb"><td class="memItemLeft" align="right" valign="top">fourdst::composition::Composition&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#a239826d90cb5db236e68230f7ac84bcb">collectComposition</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a239826d90cb5db236e68230f7ac84bcb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Recursively collect composition from current engine and any sub engines if they exist.  <br /></td></tr>
+<tr class="separator:a239826d90cb5db236e68230f7ac84bcb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2947824dca9662e113153de5c6516609" id="r_a2947824dca9662e113153de5c6516609"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1engine.html#a83c9d755597668bba3cf00cd0ea10ee3">gridfire::engine::SpeciesStatus</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#a2947824dca9662e113153de5c6516609">getSpeciesStatus</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a2947824dca9662e113153de5c6516609"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the status of a species in the network.  <br /></td></tr>
+<tr class="separator:a2947824dca9662e113153de5c6516609"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1engine_1_1Engine"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1engine_1_1Engine')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1engine_1_1Engine.html">gridfire::engine::Engine</a></td></tr>
+<tr class="memitem:af0ea99416c28933d364a872fc6aff556 inherit pub_methods_classgridfire_1_1engine_1_1Engine" id="r_af0ea99416c28933d364a872fc6aff556"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1Engine.html#af0ea99416c28933d364a872fc6aff556">~Engine</a> ()=default</td></tr>
+<tr class="memdesc:af0ea99416c28933d364a872fc6aff556 inherit pub_methods_classgridfire_1_1engine_1_1Engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:af0ea99416c28933d364a872fc6aff556 inherit pub_methods_classgridfire_1_1engine_1_1Engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a2246382b1c98ba69cdb419bba63a6d03" id="r_a2246382b1c98ba69cdb419bba63a6d03"><td class="memItemLeft" align="right" valign="top">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngine.html#a2246382b1c98ba69cdb419bba63a6d03">m_species_cache</a></td></tr>
+<tr class="separator:a2246382b1c98ba69cdb419bba63a6d03"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a6832a7898da51017a20f578e33cba729" name="a6832a7898da51017a20f578e33cba729"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6832a7898da51017a20f578e33cba729">&#9670;&#160;</a></span>calculateEpsDerivatives()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html">gridfire::engine::EnergyDerivatives</a> PyDynamicEngine::calculateEpsDerivatives </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculate the derivatives of the energy generation rate with respect to T and rho. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>EnergyDerivatives containing dEps/dT and dEps/dRho.</dd></dl>
+<p>This method computes the partial derivatives of the specific nuclear energy generation rate with respect to temperature and density for the current state. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ada6a1295a92c2aede841672ecae0cede">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a8facba88b6df6e016ce53a0ff3cff125" name="a8facba88b6df6e016ce53a0ff3cff125"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8facba88b6df6e016ce53a0ff3cff125">&#9670;&#160;</a></span>calculateMolarReactionFlow()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double PyDynamicEngine::calculateMolarReactionFlow </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculate the molar reaction flow for a given reaction. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The reaction for which to calculate the flow. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Molar flow rate for the reaction (e.g., mol/g/s).</dd></dl>
+<p>This method computes the net rate at which the given reaction proceeds under the current state. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aa57fa5e58b98a03fba31bcddda8001d4">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="aac1f2005c0a58befc4e01627c9357924" name="aac1f2005c0a58befc4e01627c9357924"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aac1f2005c0a58befc4e01627c9357924">&#9670;&#160;</a></span>calculateRHSAndEnergy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; <a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">gridfire::engine::StepDerivatives</a>&lt; double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">gridfire::engine::EngineStatus</a> &gt; PyDynamicEngine::calculateRHSAndEnergy </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculate the right-hand side (dY/dt) and energy generation. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>expected&lt;StepDerivatives&lt;double&gt;&gt; containing either dY/dt and energy generation rate or a stale engine error indicating that the engine must be updated</dd></dl>
+<p>This function must be implemented by derived classes to compute the time derivatives of all species and the specific nuclear energy generation rate for the current state. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1Engine.html#a764fc091c72c12c8529105d7c96badb2">gridfire::engine::Engine</a>.</p>
+
+</div>
+</div>
+<a id="a239826d90cb5db236e68230f7ac84bcb" name="a239826d90cb5db236e68230f7ac84bcb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a239826d90cb5db236e68230f7ac84bcb">&#9670;&#160;</a></span>collectComposition()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::composition::Composition PyDynamicEngine::collectComposition </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Recursively collect composition from current engine and any sub engines if they exist. </p>
+<p>If species i is defined in comp and in any sub engine or self composition then the molar abundance of species i in the returned composition will be that defined in comp. If there are species defined in sub engine compositions which are not defined in comp then their molar abundances will be based on the reported values from each sub engine. </p><dl class="section note"><dt>Note</dt><dd>It is up to each engine to decide how to handle filling in the return composition. </dd>
+<dd>
+These methods return an unfinalized composition which must then be finalized by the caller </dd></dl>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Input composition to "normalize". </td></tr>
+    <tr><td class="paramname">T9</td><td></td></tr>
+    <tr><td class="paramname">rho</td><td></td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>An updated composition which is a superset of comp. This may contain species which were culled, for example, by either QSE partitioning or reaction flow rate culling </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a41877719ae5e8de53c1692c7cf9bfbfc">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a298f700c647d2c3973d2a35d370c823e" name="a298f700c647d2c3973d2a35d370c823e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a298f700c647d2c3973d2a35d370c823e">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[1/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a> PyDynamicEngine::generateJacobianMatrix </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generate the Jacobian matrix for the current state. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method must compute and store the Jacobian matrix (∂(dY/dt)_i/∂Y_j) for the current state. The matrix can then be accessed via getJacobianMatrixEntry(). </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a53276f09346b531f8676db355e1219eb">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a204643754cac3cf37c550ecd32f659fe" name="a204643754cac3cf37c550ecd32f659fe"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a204643754cac3cf37c550ecd32f659fe">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[2/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a> PyDynamicEngine::generateJacobianMatrix </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1engine.html#af5175018d2d1e78a8826dd33ec6d675f">gridfire::engine::SparsityPattern</a> &amp;&#160;</td>
+          <td class="paramname"><em>sparsityPattern</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generate the Jacobian matrix for the current state with a specified sparsity pattern. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+    <tr><td class="paramname">sparsityPattern</td><td>The sparsity pattern to use for the Jacobian matrix.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method must compute and store the Jacobian matrix (∂(dY/dt)_i/∂Y_j) for the current state using automatic differentiation, taking into account the provided sparsity pattern. The matrix can then be accessed via <code>getJacobianMatrixEntry()</code>.</p>
+<dl class="section see"><dt>See also</dt><dd>getJacobianMatrixEntry() </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a51d55a21be28e372021b2b8e5ecdc551">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a2b1c054b250abccc2af9a7275c68df4a" name="a2b1c054b250abccc2af9a7275c68df4a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2b1c054b250abccc2af9a7275c68df4a">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[3/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a> PyDynamicEngine::generateJacobianMatrix </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>activeSpecies</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generate the Jacobian matrix for the current state using a subset of active species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+    <tr><td class="paramname">activeSpecies</td><td>The set of species to include in the Jacobian calculation.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method must compute and store the Jacobian matrix (∂(dY/dt)_i/∂Y_j) for the current state, considering only the specified subset of active species. The matrix can then be accessed via getJacobianMatrixEntry(). </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a15d53dac8b622a3b7d0f928a3995dbde">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a2066649ca11a869c054079ea12d8d0e9" name="a2066649ca11a869c054079ea12d8d0e9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2066649ca11a869c054079ea12d8d0e9">&#9670;&#160;</a></span>generateStoichiometryMatrix()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void PyDynamicEngine::generateStoichiometryMatrix </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generate the stoichiometry matrix for the network. </p>
+<p>This method must compute and store the stoichiometry matrix, which encodes the net change of each species in each reaction. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a5e2c45a3e415b53e41def8f743f93464">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a541cf022fe3253279f8f1309c10556d7" name="a541cf022fe3253279f8f1309c10556d7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a541cf022fe3253279f8f1309c10556d7">&#9670;&#160;</a></span>getDepth()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">gridfire::engine::BuildDepthType</a> PyDynamicEngine::getDepth </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get the depth of the network. </p>
+<dl class="section return"><dt>Returns</dt><dd>The depth of the network, which may indicate the level of detail or complexity in the reaction network.</dd></dl>
+<p>This method is intended to provide information about the network's structure, such as how many layers of reactions or species are present. It can be useful for diagnostics and understanding the network's complexity. </p>
+
+<p>Reimplemented from <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ac5a0def6b6af0bd93bf9057c25f048ff">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a1d5143640666631501cf229bc491516e" name="a1d5143640666631501cf229bc491516e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1d5143640666631501cf229bc491516e">&#9670;&#160;</a></span>getNetworkReactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a> &amp; PyDynamicEngine::getNetworkReactions </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get the set of logical reactions in the network. </p>
+<dl class="section return"><dt>Returns</dt><dd>Reference to the LogicalReactionSet containing all reactions. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a26b59a4c7622bf820c0eeec6a7522aa8">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="afc745e7ab5da5d8b3cf916044515cd7d" name="afc745e7ab5da5d8b3cf916044515cd7d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afc745e7ab5da5d8b3cf916044515cd7d">&#9670;&#160;</a></span>getNetworkSpecies()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt; fourdst::atomic::Species &gt; &amp; PyDynamicEngine::getNetworkSpecies </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a> Implementation ///. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1Engine.html#a3263c3fde2509d5d8ec4da3b6e946c48">gridfire::engine::Engine</a>.</p>
+
+</div>
+</div>
+<a id="ab4cfdca5e15957c5cef75ffa6dedeee5" name="ab4cfdca5e15957c5cef75ffa6dedeee5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab4cfdca5e15957c5cef75ffa6dedeee5">&#9670;&#160;</a></span>getScreeningModel()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">gridfire::screening::ScreeningType</a> PyDynamicEngine::getScreeningModel </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get the current electron screening model. </p>
+<dl class="section return"><dt>Returns</dt><dd>The currently active screening model type.</dd></dl>
+<dl class="section user"><dt>Usage Example:</dt><dd><div class="fragment"><div class="line">screening::ScreeningType currentModel = myEngine.getScreeningModel();</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a24103027a38e02d4342161164554d332">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a8d34faa3d6ea804a3467979858d33535" name="a8d34faa3d6ea804a3467979858d33535"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8d34faa3d6ea804a3467979858d33535">&#9670;&#160;</a></span>getSpeciesDestructionTimescales()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">gridfire::engine::EngineStatus</a> &gt; PyDynamicEngine::getSpeciesDestructionTimescales </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Compute destruction timescales for all species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Map from Species to their destruction timescales (s).</dd></dl>
+<p>This method estimates the destruction timescale for each species, which can be useful for understanding reaction flows and equilibrium states. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aefc5d0f7842b27a108ba1e4ca346e9a0">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a95d10a7b240d543a1bc6c67ddf2dc8e0" name="a95d10a7b240d543a1bc6c67ddf2dc8e0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a95d10a7b240d543a1bc6c67ddf2dc8e0">&#9670;&#160;</a></span>getSpeciesIndex()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t PyDynamicEngine::getSpeciesIndex </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get the index of a species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to look up.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method allows querying the index of a specific species in the engine's internal representation. It is useful for accessing species data efficiently. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ac0f40017603e8e6887b75dc7360d7c5e">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a2947824dca9662e113153de5c6516609" name="a2947824dca9662e113153de5c6516609"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2947824dca9662e113153de5c6516609">&#9670;&#160;</a></span>getSpeciesStatus()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1engine.html#a83c9d755597668bba3cf00cd0ea10ee3">gridfire::engine::SpeciesStatus</a> PyDynamicEngine::getSpeciesStatus </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get the status of a species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to check. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>SpeciesStatus indicating whether the species is active, inactive, or culled.</dd></dl>
+<p>This method allows querying the current status of a specific species within the engine's network. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a8aebefad50c1aa34207e118e92d7ccf0">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a71678a567bb0cedd8a97aff9ceddd814" name="a71678a567bb0cedd8a97aff9ceddd814"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a71678a567bb0cedd8a97aff9ceddd814">&#9670;&#160;</a></span>getSpeciesTimescales()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">gridfire::engine::EngineStatus</a> &gt; PyDynamicEngine::getSpeciesTimescales </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Compute timescales for all species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Map from Species to their characteristic timescales (s).</dd></dl>
+<p>This method estimates the timescale for abundance change of each species, which can be used for timestep control, diagnostics, and reaction network culling. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aef6ed91d922c0b1733fd7835e99d0efe">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a3dd5cf419f25e76e144af35df15a2067" name="a3dd5cf419f25e76e144af35df15a2067"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3dd5cf419f25e76e144af35df15a2067">&#9670;&#160;</a></span>getStoichiometryMatrixEntry()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int PyDynamicEngine::getStoichiometryMatrixEntry </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get an entry from the stoichiometry matrix. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>species to look up stoichiometry for. </td></tr>
+    <tr><td class="paramname">reaction</td><td>reaction to find </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Stoichiometric coefficient for the species in the reaction.</dd></dl>
+<p>The stoichiometry matrix must have been generated by <a class="el" href="classPyDynamicEngine.html#a2066649ca11a869c054079ea12d8d0e9" title="Generate the stoichiometry matrix for the network.">generateStoichiometryMatrix()</a>. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a5ce6ff370e3f0964c6b2688fb3f4bb7e">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a55bf19ed7534a312a36faf74753f7b14" name="a55bf19ed7534a312a36faf74753f7b14"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a55bf19ed7534a312a36faf74753f7b14">&#9670;&#160;</a></span>isStale()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool PyDynamicEngine::isStale </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">gridfire::NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Check if the engine's internal state is stale. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>A struct containing the current network input, such as temperature, density, and composition. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the engine's state is stale and needs to be updated; false otherwise.</dd></dl>
+<p>This method allows derived classes to determine if their internal state is out-of-date with respect to the provided network conditions. If the engine is stale, it may require a call to <code><a class="el" href="classPyDynamicEngine.html#af8e6a8cd44f278535d7bcc9a896d6da8" title="Update the internal state of the engine.">update()</a></code> before performing calculations.</p>
+<dl class="section user"><dt>Usage Example:</dt><dd><div class="fragment"><div class="line">NetIn input = { ... };</div>
+<div class="line"><span class="keywordflow">if</span> (myEngine.isStale(input)) {</div>
+<div class="line">    <span class="comment">// Update the engine before proceeding</span></div>
+<div class="line">}</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a79423b9f67b4cac702547b4f1d8bd14c">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a61bb4b430fe740cfb2c24e5cc673e4ac" name="a61bb4b430fe740cfb2c24e5cc673e4ac"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a61bb4b430fe740cfb2c24e5cc673e4ac">&#9670;&#160;</a></span>mapNetInToMolarAbundanceVector()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; double &gt; PyDynamicEngine::mapNetInToMolarAbundanceVector </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">gridfire::NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Map a NetIn object to a vector of molar abundances. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>The input conditions for the network. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of molar abundances corresponding to the species in the network.</dd></dl>
+<p>This method converts the input conditions into a vector of molar abundances, which can be used for further calculations or diagnostics. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aa9d55b81c1963113aad86aa60c19676f">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a6118af81e45d2850f7a2517891147274" name="a6118af81e45d2850f7a2517891147274"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6118af81e45d2850f7a2517891147274">&#9670;&#160;</a></span>primeEngine()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html">gridfire::engine::PrimingReport</a> PyDynamicEngine::primeEngine </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">gridfire::NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Prime the engine with initial conditions. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>The input conditions for the network. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>PrimingReport containing information about the priming process.</dd></dl>
+<p>This method is used to prepare the engine for calculations by setting up initial conditions, reactions, and species. It may involve compiling reaction rates, initializing internal data structures, and performing any necessary pre-computation. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a70e270bb50910c0055a75575c1ef1e95">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a25e52496b36d731127603c31e9dcaa97" name="a25e52496b36d731127603c31e9dcaa97"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a25e52496b36d731127603c31e9dcaa97">&#9670;&#160;</a></span>rebuild()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void PyDynamicEngine::rebuild </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">gridfire::engine::BuildDepthType</a>&#160;</td>
+          <td class="paramname"><em>depth</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Rebuild the network with a specified depth. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The composition to rebuild the network with. </td></tr>
+    <tr><td class="paramname">depth</td><td>The desired depth of the network.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method is intended to allow dynamic adjustment of the network's depth, which may involve adding or removing species and reactions based on the specified depth. However, not all engines support this operation. </p>
+
+<p>Reimplemented from <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a2444b9ed3bc61920ce23c546444269e4">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="af469cba3be850d53f659ec173f0eb4e4" name="af469cba3be850d53f659ec173f0eb4e4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af469cba3be850d53f659ec173f0eb4e4">&#9670;&#160;</a></span>setNetworkReactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void PyDynamicEngine::setNetworkReactions </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Set the reactions for the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of reactions to use in the network.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method replaces the current set of reactions in the network with the provided set. It marks the engine as stale, requiring regeneration of matrices and recalculation of rates. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ab321170954bffc53b1bedaf54f6976be">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="afa3abfd612033336a656f092721c14ac" name="afa3abfd612033336a656f092721c14ac"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afa3abfd612033336a656f092721c14ac">&#9670;&#160;</a></span>setScreeningModel()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void PyDynamicEngine::setScreeningModel </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">gridfire::screening::ScreeningType</a>&#160;</td>
+          <td class="paramname"><em>model</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Set the electron screening model. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">model</td><td>The type of screening model to use for reaction rate calculations.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method allows changing the screening model at runtime. Screening corrections account for the electrostatic shielding of nuclei by electrons, which affects reaction rates in dense stellar plasmas.</p>
+<dl class="section user"><dt>Usage Example:</dt><dd><div class="fragment"><div class="line">myEngine.setScreeningModel(screening::ScreeningType::WEAK);</div>
+</div><!-- fragment --></dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The engine will use the specified screening model for subsequent rate calculations. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a50e76977d0dc3cc23d52b51842d35003">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="af8e6a8cd44f278535d7bcc9a896d6da8" name="af8e6a8cd44f278535d7bcc9a896d6da8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af8e6a8cd44f278535d7bcc9a896d6da8">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::composition::Composition PyDynamicEngine::update </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">gridfire::NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Update the internal state of the engine. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>A struct containing the current network input, such as temperature, density, and composition.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method is intended to be implemented by derived classes to update their internal state based on the provided network conditions. For example, an adaptive engine might use this to re-evaluate which reactions and species are active. For other engines that do not support manually updating, this method might do nothing.</p>
+<dl class="section user"><dt>Usage Example:</dt><dd><div class="fragment"><div class="line">NetIn input = { ... };</div>
+<div class="line">myEngine.update(input);</div>
+</div><!-- fragment --></dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The internal state of the engine is updated to reflect the new conditions. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a8dd85442ec54f20d91743c72364e36ff">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a2246382b1c98ba69cdb419bba63a6d03" name="a2246382b1c98ba69cdb419bba63a6d03"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2246382b1c98ba69cdb419bba63a6d03">&#9670;&#160;</a></span>m_species_cache</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;fourdst::atomic::Species&gt; PyDynamicEngine::m_species_cache</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+ </tbody>
+</table>
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+<!-- Generated by Doxygen 1.9.8 -->
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+<div class="header">
+  <div class="headertitle"><div class="title">PyDynamicEngineView Member List</div></div>
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+
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+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: PyDynamicEngineView Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
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+<!-- Generated by Doxygen 1.9.8 -->
+<script type="text/javascript">
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+/* @license-end */
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+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
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+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */
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+<div id="side-nav" class="ui-resizable side-nav-resizable">
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+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="classPyDynamicEngineView-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">PyDynamicEngineView Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;py_engine.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for PyDynamicEngineView:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classPyDynamicEngineView__inherit__graph.svg" width="183" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for PyDynamicEngineView:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classPyDynamicEngineView__coll__graph.svg" width="183" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:a9dd533670f1de47c0917a0be6b30b9ab" id="r_a9dd533670f1de47c0917a0be6b30b9ab"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicEngineView.html#a9dd533670f1de47c0917a0be6b30b9ab">getBaseEngine</a> () const override</td></tr>
+<tr class="memdesc:a9dd533670f1de47c0917a0be6b30b9ab"><td class="mdescLeft">&#160;</td><td class="mdescRight">Access the underlying engine instance.  <br /></td></tr>
+<tr class="separator:a9dd533670f1de47c0917a0be6b30b9ab"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1engine_1_1EngineView"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1engine_1_1EngineView')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1engine_1_1EngineView.html">gridfire::engine::EngineView&lt; gridfire::engine::DynamicEngine &gt;</a></td></tr>
+<tr class="memitem:a17d63e853d6efca31064e9147c80d497 inherit pub_methods_classgridfire_1_1engine_1_1EngineView" id="r_a17d63e853d6efca31064e9147c80d497"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a17d63e853d6efca31064e9147c80d497">~EngineView</a> ()=default</td></tr>
+<tr class="memdesc:a17d63e853d6efca31064e9147c80d497 inherit pub_methods_classgridfire_1_1engine_1_1EngineView"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:a17d63e853d6efca31064e9147c80d497 inherit pub_methods_classgridfire_1_1engine_1_1EngineView"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a9dd533670f1de47c0917a0be6b30b9ab" name="a9dd533670f1de47c0917a0be6b30b9ab"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9dd533670f1de47c0917a0be6b30b9ab">&#9670;&#160;</a></span>getBaseEngine()</h2>
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+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
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+          <td class="memname">const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a> &amp; PyDynamicEngineView::getBaseEngine </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">private</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Access the underlying engine instance. </p>
+<dl class="section return"><dt>Returns</dt><dd>Const reference to the underlying engine.</dd></dl>
+<p>This method must be implemented by derived classes to provide access to the base engine. The returned reference should remain valid for the lifetime of the EngineView.</p>
+<p>Example: </p><div class="fragment"><div class="line"><span class="keyword">const</span> DynamicEngine&amp; engine = myView.getBaseEngine();</div>
+</div><!-- fragment --> 
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a7884ea8e5618e295e64150f3ecf2c6b5">gridfire::engine::EngineView&lt; gridfire::engine::DynamicEngine &gt;</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/python/engine/trampoline/<a class="el" href="py__engine_8h.html">py_engine.h</a></li>
+<li>src/python/engine/trampoline/<a class="el" href="py__engine_8cpp.html">py_engine.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="classPyDynamicEngineView.html">PyDynamicEngineView</a></li>
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+  </ul>
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+<p>This is the complete list of members for <a class="el" href="classPyDynamicNetworkSolverStrategy.html">PyDynamicNetworkSolverStrategy</a>, including all inherited members.</p>
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+  <tr class="even"><td class="entry"><a class="el" href="classPyDynamicNetworkSolverStrategy.html#a147a0a543268427a5930143902217ac3">describe_callback_context</a>() const override</td><td class="entry"><a class="el" href="classPyDynamicNetworkSolverStrategy.html">PyDynamicNetworkSolverStrategy</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classPyDynamicNetworkSolverStrategy.html#a2095abb83ed6229ebb27b4883cec51c4">evaluate</a>(const gridfire::NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classPyDynamicNetworkSolverStrategy.html">PyDynamicNetworkSolverStrategy</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a01cbbec0eb5c3a60f50da38cdaf66505">NetworkSolverStrategy</a>(EngineT &amp;engine)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classPyDynamicNetworkSolverStrategy.html#a5adc2c51958c6114b4c46264e4d68917">PyDynamicNetworkSolverStrategy</a>(gridfire::engine::DynamicEngine &amp;engine)</td><td class="entry"><a class="el" href="classPyDynamicNetworkSolverStrategy.html">PyDynamicNetworkSolverStrategy</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classPyDynamicNetworkSolverStrategy.html#a112a7babc03858a69d6994a7155370d3">set_callback</a>(const std::any &amp;callback) override</td><td class="entry"><a class="el" href="classPyDynamicNetworkSolverStrategy.html">PyDynamicNetworkSolverStrategy</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a1693dc93f63599c89587d729aca8e318">~NetworkSolverStrategy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="header">
+  <div class="summary">
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="classPyDynamicNetworkSolverStrategy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">PyDynamicNetworkSolverStrategy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;py_solver.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for PyDynamicNetworkSolverStrategy:</div>
+<div class="dyncontent">
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for PyDynamicNetworkSolverStrategy:</div>
+<div class="dyncontent">
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:a5adc2c51958c6114b4c46264e4d68917" id="r_a5adc2c51958c6114b4c46264e4d68917"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicNetworkSolverStrategy.html#a5adc2c51958c6114b4c46264e4d68917">PyDynamicNetworkSolverStrategy</a> (<a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a> &amp;engine)</td></tr>
+<tr class="separator:a5adc2c51958c6114b4c46264e4d68917"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2095abb83ed6229ebb27b4883cec51c4" id="r_a2095abb83ed6229ebb27b4883cec51c4"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1NetOut.html">gridfire::NetOut</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicNetworkSolverStrategy.html#a2095abb83ed6229ebb27b4883cec51c4">evaluate</a> (const <a class="el" href="structgridfire_1_1NetIn.html">gridfire::NetIn</a> &amp;netIn) override</td></tr>
+<tr class="memdesc:a2095abb83ed6229ebb27b4883cec51c4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluates the network for a given timestep.  <br /></td></tr>
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+<tr class="memdesc:a112a7babc03858a69d6994a7155370d3"><td class="mdescLeft">&#160;</td><td class="mdescRight">set the callback function to be called at the end of each timestep.  <br /></td></tr>
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+<tr class="memitem:a147a0a543268427a5930143902217ac3" id="r_a147a0a543268427a5930143902217ac3"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::tuple&lt; std::string, std::string &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyDynamicNetworkSolverStrategy.html#a147a0a543268427a5930143902217ac3">describe_callback_context</a> () const override</td></tr>
+<tr class="memdesc:a147a0a543268427a5930143902217ac3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Describe the context that will be passed to the callback function.  <br /></td></tr>
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+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1solver_1_1NetworkSolverStrategy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1solver_1_1NetworkSolverStrategy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></td></tr>
+<tr class="memitem:a01cbbec0eb5c3a60f50da38cdaf66505 inherit pub_methods_classgridfire_1_1solver_1_1NetworkSolverStrategy" id="r_a01cbbec0eb5c3a60f50da38cdaf66505"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a01cbbec0eb5c3a60f50da38cdaf66505">NetworkSolverStrategy</a> (EngineT &amp;engine)</td></tr>
+<tr class="memdesc:a01cbbec0eb5c3a60f50da38cdaf66505 inherit pub_methods_classgridfire_1_1solver_1_1NetworkSolverStrategy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructor for the <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html" title="Abstract base class for network solver strategies.">NetworkSolverStrategy</a>.  <br /></td></tr>
+<tr class="separator:a01cbbec0eb5c3a60f50da38cdaf66505 inherit pub_methods_classgridfire_1_1solver_1_1NetworkSolverStrategy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1693dc93f63599c89587d729aca8e318 inherit pub_methods_classgridfire_1_1solver_1_1NetworkSolverStrategy" id="r_a1693dc93f63599c89587d729aca8e318"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a1693dc93f63599c89587d729aca8e318">~NetworkSolverStrategy</a> ()=default</td></tr>
+<tr class="memdesc:a1693dc93f63599c89587d729aca8e318 inherit pub_methods_classgridfire_1_1solver_1_1NetworkSolverStrategy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:a1693dc93f63599c89587d729aca8e318 inherit pub_methods_classgridfire_1_1solver_1_1NetworkSolverStrategy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pro_attribs_classgridfire_1_1solver_1_1NetworkSolverStrategy"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classgridfire_1_1solver_1_1NetworkSolverStrategy')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></td></tr>
+<tr class="memitem:a724924d94eaf82b67d9988a55c3261e8 inherit pro_attribs_classgridfire_1_1solver_1_1NetworkSolverStrategy" id="r_a724924d94eaf82b67d9988a55c3261e8"><td class="memItemLeft" align="right" valign="top">EngineT &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a></td></tr>
+<tr class="memdesc:a724924d94eaf82b67d9988a55c3261e8 inherit pro_attribs_classgridfire_1_1solver_1_1NetworkSolverStrategy"><td class="mdescLeft">&#160;</td><td class="mdescRight">The engine used by this solver strategy.  <br /></td></tr>
+<tr class="separator:a724924d94eaf82b67d9988a55c3261e8 inherit pro_attribs_classgridfire_1_1solver_1_1NetworkSolverStrategy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a5adc2c51958c6114b4c46264e4d68917" name="a5adc2c51958c6114b4c46264e4d68917"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5adc2c51958c6114b4c46264e4d68917">&#9670;&#160;</a></span>PyDynamicNetworkSolverStrategy()</h2>
+
+<div class="memitem">
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+  <td class="mlabels-left">
+      <table class="memname">
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+          <td class="memname">PyDynamicNetworkSolverStrategy::PyDynamicNetworkSolverStrategy </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a> &amp;&#160;</td>
+          <td class="paramname"><em>engine</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">explicit</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a147a0a543268427a5930143902217ac3" name="a147a0a543268427a5930143902217ac3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a147a0a543268427a5930143902217ac3">&#9670;&#160;</a></span>describe_callback_context()</h2>
+
+<div class="memitem">
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+  <td class="mlabels-left">
+      <table class="memname">
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+          <td class="memname">std::vector&lt; std::tuple&lt; std::string, std::string &gt; &gt; PyDynamicNetworkSolverStrategy::describe_callback_context </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">private</span><span class="mlabel">virtual</span></span>  </td>
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+
+<p>Describe the context that will be passed to the callback function. </p>
+<dl class="section return"><dt>Returns</dt><dd>A vector of tuples, each containing a string for the parameter's name and a string for its type.</dd></dl>
+<p>This method should be overridden by derived classes to provide a description of the context that will be passed to the callback function. The intent of this method is that an end user can investigate the context that will be passed to the callback function, and use this information to craft their own callback function. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#ae09169769774f17df8701c42a64ed656">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a2095abb83ed6229ebb27b4883cec51c4" name="a2095abb83ed6229ebb27b4883cec51c4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2095abb83ed6229ebb27b4883cec51c4">&#9670;&#160;</a></span>evaluate()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1NetOut.html">gridfire::NetOut</a> PyDynamicNetworkSolverStrategy::evaluate </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">gridfire::NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">private</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
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+
+<p>Evaluates the network for a given timestep. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>The input conditions for the network. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The output conditions after the timestep. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#ace539b0482db171845ff1bd38d76b70f">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a112a7babc03858a69d6994a7155370d3" name="a112a7babc03858a69d6994a7155370d3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a112a7babc03858a69d6994a7155370d3">&#9670;&#160;</a></span>set_callback()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void PyDynamicNetworkSolverStrategy::set_callback </td>
+          <td>(</td>
+          <td class="paramtype">const std::any &amp;&#160;</td>
+          <td class="paramname"><em>callback</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">private</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>set the callback function to be called at the end of each timestep. </p>
+<p>This function allows the user to set a callback function that will be called at the end of each timestep. The callback function will receive a <a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>::&lt;SOMESOLVER&gt;::TimestepContext object. Note that depending on the solver, this context may contain different information. Further, the exact signature of the callback function is left up to each solver. Every solver should provide a type or type alias TimestepCallback that defines the signature of the callback function so that the user can easily get that type information.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">callback</td><td>The callback function to be called at the end of each timestep. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a4d97ee85933d5e5f90d4194bb021a1dc">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/python/solver/trampoline/<a class="el" href="py__solver_8h.html">py_solver.h</a></li>
+<li>src/python/solver/trampoline/<a class="el" href="py__solver_8cpp.html">py_solver.cpp</a></li>
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+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classPyEngine-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">PyEngine Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;py_engine.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for PyEngine:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classPyEngine__inherit__graph.svg" width="183" height="110"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for PyEngine:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classPyEngine__coll__graph.svg" width="360" height="227"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a2d240423899e039c2ca688e96f8af1f2" id="r_a2d240423899e039c2ca688e96f8af1f2"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyEngine.html#a2d240423899e039c2ca688e96f8af1f2">getNetworkSpecies</a> () const override</td></tr>
+<tr class="memdesc:a2d240423899e039c2ca688e96f8af1f2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the list of species in the network.  <br /></td></tr>
+<tr class="separator:a2d240423899e039c2ca688e96f8af1f2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abc26a86d4f93b37564d32814edbbac4d" id="r_abc26a86d4f93b37564d32814edbbac4d"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">gridfire::engine::StepDerivatives</a>&lt; double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">gridfire::engine::EngineStatus</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyEngine.html#abc26a86d4f93b37564d32814edbbac4d">calculateRHSAndEnergy</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:abc26a86d4f93b37564d32814edbbac4d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the right-hand side (dY/dt) and energy generation.  <br /></td></tr>
+<tr class="separator:abc26a86d4f93b37564d32814edbbac4d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1engine_1_1Engine"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1engine_1_1Engine')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1engine_1_1Engine.html">gridfire::engine::Engine</a></td></tr>
+<tr class="memitem:af0ea99416c28933d364a872fc6aff556 inherit pub_methods_classgridfire_1_1engine_1_1Engine" id="r_af0ea99416c28933d364a872fc6aff556"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1Engine.html#af0ea99416c28933d364a872fc6aff556">~Engine</a> ()=default</td></tr>
+<tr class="memdesc:af0ea99416c28933d364a872fc6aff556 inherit pub_methods_classgridfire_1_1engine_1_1Engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:af0ea99416c28933d364a872fc6aff556 inherit pub_methods_classgridfire_1_1engine_1_1Engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a73caaa7606e2cdfd1aa82729a78ebb73" id="r_a73caaa7606e2cdfd1aa82729a78ebb73"><td class="memItemLeft" align="right" valign="top">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyEngine.html#a73caaa7606e2cdfd1aa82729a78ebb73">m_species_cache</a></td></tr>
+<tr class="separator:a73caaa7606e2cdfd1aa82729a78ebb73"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="abc26a86d4f93b37564d32814edbbac4d" name="abc26a86d4f93b37564d32814edbbac4d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abc26a86d4f93b37564d32814edbbac4d">&#9670;&#160;</a></span>calculateRHSAndEnergy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; <a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">gridfire::engine::StepDerivatives</a>&lt; double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">gridfire::engine::EngineStatus</a> &gt; PyEngine::calculateRHSAndEnergy </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculate the right-hand side (dY/dt) and energy generation. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>expected&lt;StepDerivatives&lt;double&gt;&gt; containing either dY/dt and energy generation rate or a stale engine error indicating that the engine must be updated</dd></dl>
+<p>This function must be implemented by derived classes to compute the time derivatives of all species and the specific nuclear energy generation rate for the current state. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1Engine.html#a764fc091c72c12c8529105d7c96badb2">gridfire::engine::Engine</a>.</p>
+
+</div>
+</div>
+<a id="a2d240423899e039c2ca688e96f8af1f2" name="a2d240423899e039c2ca688e96f8af1f2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2d240423899e039c2ca688e96f8af1f2">&#9670;&#160;</a></span>getNetworkSpecies()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt; fourdst::atomic::Species &gt; &amp; PyEngine::getNetworkSpecies </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get the list of species in the network. </p>
+<dl class="section return"><dt>Returns</dt><dd>Vector of Species objects representing all network species. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1Engine.html#a3263c3fde2509d5d8ec4da3b6e946c48">gridfire::engine::Engine</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a73caaa7606e2cdfd1aa82729a78ebb73" name="a73caaa7606e2cdfd1aa82729a78ebb73"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a73caaa7606e2cdfd1aa82729a78ebb73">&#9670;&#160;</a></span>m_species_cache</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;fourdst::atomic::Species&gt; PyEngine::m_species_cache</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/python/engine/trampoline/<a class="el" href="py__engine_8h.html">py_engine.h</a></li>
+<li>src/python/engine/trampoline/<a class="el" href="py__engine_8cpp.html">py_engine.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="classPyEngine.html">PyEngine</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
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+    [ "m_species_cache", "classPyEngine.html#a73caaa7606e2cdfd1aa82729a78ebb73", null ]
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+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.9.8"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
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+<script type="text/javascript" src="search/searchdata.js"></script>
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+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.9.8 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */
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+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
+    <div id="nav-tree-contents">
+      <div id="nav-sync" class="sync"></div>
+    </div>
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+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(document).ready(function(){initNavTree('classPyEngineView.html',''); initResizable(); });
+/* @license-end */
+</script>
+<div id="doc-content">
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+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">PyEngineView Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classPyEngineView.html">PyEngineView</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classPyEngineView.html#aea9da2bcfdf25f3d17d007091eece206">getBaseEngine</a>() const override</td><td class="entry"><a class="el" href="classPyEngineView.html">PyEngineView</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a17d63e853d6efca31064e9147c80d497">~EngineView</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html">gridfire::engine::EngineView&lt; gridfire::engine::Engine &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classPyEngineView.html b/docs/html/classPyEngineView.html
new file mode 100644
index 00000000..b74e0be2
--- /dev/null
+++ b/docs/html/classPyEngineView.html
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.9.8"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: PyEngineView Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.9.8 -->
+<script type="text/javascript">
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+/* @license-end */
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+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */
+</script>
+<div id="main-nav"></div>
+</div><!-- top -->
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+  <div id="nav-tree">
+    <div id="nav-tree-contents">
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+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(document).ready(function(){initNavTree('classPyEngineView.html',''); initResizable(); });
+/* @license-end */
+</script>
+<div id="doc-content">
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+<div id="MSearchSelectWindow"
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+<!-- iframe showing the search results (closed by default) -->
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+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="classPyEngineView-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">PyEngineView Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;py_engine.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for PyEngineView:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classPyEngineView__inherit__graph.svg" width="183" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for PyEngineView:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classPyEngineView__coll__graph.svg" width="183" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:aea9da2bcfdf25f3d17d007091eece206" id="r_aea9da2bcfdf25f3d17d007091eece206"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1engine_1_1Engine.html">gridfire::engine::Engine</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyEngineView.html#aea9da2bcfdf25f3d17d007091eece206">getBaseEngine</a> () const override</td></tr>
+<tr class="memdesc:aea9da2bcfdf25f3d17d007091eece206"><td class="mdescLeft">&#160;</td><td class="mdescRight">Access the underlying engine instance.  <br /></td></tr>
+<tr class="separator:aea9da2bcfdf25f3d17d007091eece206"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1engine_1_1EngineView"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1engine_1_1EngineView')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1engine_1_1EngineView.html">gridfire::engine::EngineView&lt; gridfire::engine::Engine &gt;</a></td></tr>
+<tr class="memitem:a17d63e853d6efca31064e9147c80d497 inherit pub_methods_classgridfire_1_1engine_1_1EngineView" id="r_a17d63e853d6efca31064e9147c80d497"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a17d63e853d6efca31064e9147c80d497">~EngineView</a> ()=default</td></tr>
+<tr class="memdesc:a17d63e853d6efca31064e9147c80d497 inherit pub_methods_classgridfire_1_1engine_1_1EngineView"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:a17d63e853d6efca31064e9147c80d497 inherit pub_methods_classgridfire_1_1engine_1_1EngineView"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="aea9da2bcfdf25f3d17d007091eece206" name="aea9da2bcfdf25f3d17d007091eece206"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aea9da2bcfdf25f3d17d007091eece206">&#9670;&#160;</a></span>getBaseEngine()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1engine_1_1Engine.html">gridfire::engine::Engine</a> &amp; PyEngineView::getBaseEngine </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">private</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Access the underlying engine instance. </p>
+<dl class="section return"><dt>Returns</dt><dd>Const reference to the underlying engine.</dd></dl>
+<p>This method must be implemented by derived classes to provide access to the base engine. The returned reference should remain valid for the lifetime of the EngineView.</p>
+<p>Example: </p><div class="fragment"><div class="line"><span class="keyword">const</span> DynamicEngine&amp; engine = myView.getBaseEngine();</div>
+</div><!-- fragment --> 
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a7884ea8e5618e295e64150f3ecf2c6b5">gridfire::engine::EngineView&lt; gridfire::engine::Engine &gt;</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/python/engine/trampoline/<a class="el" href="py__engine_8h.html">py_engine.h</a></li>
+<li>src/python/engine/trampoline/<a class="el" href="py__engine_8cpp.html">py_engine.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
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+  <ul>
+    <li class="navelem"><a class="el" href="classPyEngineView.html">PyEngineView</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+<div class="header">
+  <div class="summary">
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="classPyNetworkFileParser-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">PyNetworkFileParser Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for PyNetworkFileParser:</div>
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:afe09d1e5b07110e62cf4c6ec713cff54" id="r_afe09d1e5b07110e62cf4c6ec713cff54"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352">gridfire::io::ParsedNetworkData</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyNetworkFileParser.html#afe09d1e5b07110e62cf4c6ec713cff54">parse</a> (const std::string &amp;filename) const override</td></tr>
+<tr class="memdesc:afe09d1e5b07110e62cf4c6ec713cff54"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parses a network file and returns the parsed data.  <br /></td></tr>
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1io_1_1NetworkFileParser"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1io_1_1NetworkFileParser')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html">gridfire::io::NetworkFileParser</a></td></tr>
+<tr class="memitem:a9b4095d06fad5df3805c92ae97b3eab3 inherit pub_methods_classgridfire_1_1io_1_1NetworkFileParser" id="r_a9b4095d06fad5df3805c92ae97b3eab3"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html#a9b4095d06fad5df3805c92ae97b3eab3">~NetworkFileParser</a> ()=default</td></tr>
+<tr class="memdesc:a9b4095d06fad5df3805c92ae97b3eab3 inherit pub_methods_classgridfire_1_1io_1_1NetworkFileParser"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for the base class.  <br /></td></tr>
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+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="afe09d1e5b07110e62cf4c6ec713cff54" name="afe09d1e5b07110e62cf4c6ec713cff54"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afe09d1e5b07110e62cf4c6ec713cff54">&#9670;&#160;</a></span>parse()</h2>
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+          <td class="memname"><a class="el" href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352">gridfire::io::ParsedNetworkData</a> PyNetworkFileParser::parse </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>filename</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
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+<p>Parses a network file and returns the parsed data. </p>
+<p>This is a pure virtual function that must be implemented by derived classes. It takes a filename as input and returns a <code>ParsedNetworkData</code> struct containing the information extracted from the file.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">filename</td><td>The path to the network file to parse. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <code>ParsedNetworkData</code> struct containing the parsed reaction data.</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the file cannot be opened or a parsing error occurs.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p><b>Usage</b> </p><div class="fragment"><div class="line">std::unique_ptr&lt;NetworkFileParser&gt; parser = std::make_unique&lt;SimpleReactionListFileParser&gt;();</div>
+<div class="line"><span class="keywordflow">try</span> {</div>
+<div class="line">    ParsedNetworkData data = parser-&gt;parse(<span class="stringliteral">&quot;my_reactions.txt&quot;</span>);</div>
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+<div class="line">} <span class="keywordflow">catch</span> (<span class="keyword">const</span> std::runtime_error&amp; e) {</div>
+<div class="line">    <span class="comment">// ... handle error</span></div>
+<div class="line">}</div>
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+<p>Implements <a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html#a66e8e724c903d6ef4dd1c8103276bdbf">gridfire::io::NetworkFileParser</a>.</p>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classPyNetworkPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">PyNetworkPolicy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
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+<p><code>#include &lt;py_policy.h&gt;</code></p>
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+<div class="center"><iframe scrolling="no" frameborder="0" src="classPyNetworkPolicy__inherit__graph.svg" width="188" height="124"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for PyNetworkPolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classPyNetworkPolicy__coll__graph.svg" width="188" height="124"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
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+<tr class="memdesc:a6871d8aae79db9b784d40b05225b3445"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct and return a DynamicEngine instance (or engine view stack) satisfying the policy.  <br /></td></tr>
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+<tr class="memitem:a8506a1f9c22d47c266abe1519ffb9bc0" id="r_a8506a1f9c22d47c266abe1519ffb9bc0"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109">gridfire::policy::NetworkPolicyStatus</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyNetworkPolicy.html#a8506a1f9c22d47c266abe1519ffb9bc0">get_status</a> () const override</td></tr>
+<tr class="memdesc:a8506a1f9c22d47c266abe1519ffb9bc0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the current verification/construction status of the policy.  <br /></td></tr>
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+<tr class="separator:ac640b306cf921c0793a296bd41e8d405"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a62eed803e30afebbbc074a3bf334524b" id="r_a62eed803e30afebbbc074a3bf334524b"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="namespacegridfire_1_1engine.html#a5387db1ec0b039955487fbc4c0034854">gridfire::engine::EngineTypes</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyNetworkPolicy.html#a62eed803e30afebbbc074a3bf334524b">get_engine_types_stack</a> () const override</td></tr>
+<tr class="separator:a62eed803e30afebbbc074a3bf334524b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a86d85c133b7dba16f93e3a084201b931" id="r_a86d85c133b7dba16f93e3a084201b931"><td class="memItemLeft" align="right" valign="top">const std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">gridfire::partition::PartitionFunction</a> &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyNetworkPolicy.html#a86d85c133b7dba16f93e3a084201b931">get_partition_function</a> () const override</td></tr>
+<tr class="separator:a86d85c133b7dba16f93e3a084201b931"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1NetworkPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1NetworkPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html">gridfire::policy::NetworkPolicy</a></td></tr>
+<tr class="memitem:a0d32c22a2d3794c328e8dd24d2cda2be inherit pub_methods_classgridfire_1_1policy_1_1NetworkPolicy" id="r_a0d32c22a2d3794c328e8dd24d2cda2be"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a0d32c22a2d3794c328e8dd24d2cda2be">~NetworkPolicy</a> ()=default</td></tr>
+<tr class="separator:a0d32c22a2d3794c328e8dd24d2cda2be inherit pub_methods_classgridfire_1_1policy_1_1NetworkPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a6871d8aae79db9b784d40b05225b3445" name="a6871d8aae79db9b784d40b05225b3445"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6871d8aae79db9b784d40b05225b3445">&#9670;&#160;</a></span>construct()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a> &amp; PyNetworkPolicy::construct </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct and return a DynamicEngine instance (or engine view stack) satisfying the policy. </p>
+<p>Implementations typically build one or more engine layers (GraphEngine, MultiscalePartitioningEngineView, AdaptiveEngineView, etc.) and return a reference to the top-most DynamicEngine. The storage lifetime of the returned reference is implementation-defined (usually owned by the policy instance).</p>
+<dl class="section return"><dt>Returns</dt><dd>DynamicEngine&amp; reference to a running/constructed engine ready for solver consumption.</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname"><a class="el" href="classgridfire_1_1exceptions_1_1MissingKeyReactionError.html" title="Exception thrown when a constructed network fails to include a key reaction required by the policy.">gridfire::exceptions::MissingKeyReactionError</a></td><td>if required reactions are not present in the constructed network (see <code><a class="el" href="error__policy_8h.html" title="Defines custom exception types related to network policy construction and verification.">gridfire/exceptions/error_policy.h</a></code>). </td></tr>
+    <tr><td class="paramname"><a class="el" href="classgridfire_1_1exceptions_1_1MissingSeedSpeciesError.html" title="Exception thrown when a required seed species is not found in the initial composition.">gridfire::exceptions::MissingSeedSpeciesError</a></td><td>if required seed species are missing from the initializing composition. </td></tr>
+    <tr><td class="paramname"><a class="el" href="classgridfire_1_1exceptions_1_1PolicyError.html" title="Base class for all exceptions related to network policy operations.">gridfire::exceptions::PolicyError</a></td><td>for other construction/verification failures.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line">DynamicEngine &amp;engine = policy.construct();</div>
+<div class="line">solver::CVODESolverStrategy solver(engine);</div>
+<div class="line">NetOut out = solver.evaluate(netIn, <span class="keyword">true</span>);</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a13cd74c967592392b01d8fe9a5b34d88">gridfire::policy::NetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="ac640b306cf921c0793a296bd41e8d405" name="ac640b306cf921c0793a296bd41e8d405"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac640b306cf921c0793a296bd41e8d405">&#9670;&#160;</a></span>get_engine_stack()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a> &gt; &gt; &amp; PyNetworkPolicy::get_engine_stack </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a92891fe37b8684fe9f1c5958674de2d5">gridfire::policy::NetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a62eed803e30afebbbc074a3bf334524b" name="a62eed803e30afebbbc074a3bf334524b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a62eed803e30afebbbc074a3bf334524b">&#9670;&#160;</a></span>get_engine_types_stack()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; <a class="el" href="namespacegridfire_1_1engine.html#a5387db1ec0b039955487fbc4c0034854">gridfire::engine::EngineTypes</a> &gt; PyNetworkPolicy::get_engine_types_stack </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#aac63625678d287d0ca36c98f51e86dd2">gridfire::policy::NetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a86d85c133b7dba16f93e3a084201b931" name="a86d85c133b7dba16f93e3a084201b931"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a86d85c133b7dba16f93e3a084201b931">&#9670;&#160;</a></span>get_partition_function()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">gridfire::partition::PartitionFunction</a> &gt; &amp; PyNetworkPolicy::get_partition_function </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a1c395eb83b0bcf728db230e7772aabcf">gridfire::policy::NetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="af0b892e995f58375144bd5559cf2b4c9" name="af0b892e995f58375144bd5559cf2b4c9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af0b892e995f58375144bd5559cf2b4c9">&#9670;&#160;</a></span>get_seed_reactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a> &amp; PyNetworkPolicy::get_seed_reactions </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Returns the set of seed reactions the policy requires. </p>
+<p>The ReactionSet describes reactions that must be present in the constructed network for the policy to be considered satisfied. Concrete policies often implement their reaction requirements by composing one or more ReactionChainPolicy instances (see <code><a class="el" href="chains_8h.html" title="Concrete implementations of ReactionChainPolicy for key stellar reaction chains.">chains.h</a></code>).</p>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keyword">const</span> reaction::ReactionSet &amp;reactions = policy.get_seed_reactions();</div>
+<div class="line"><span class="comment">// inspect reaction IDs or count</span></div>
+<div class="line">std::cout &lt;&lt; <span class="stringliteral">&quot;Policy requires &quot;</span> &lt;&lt; reactions.size() &lt;&lt; <span class="stringliteral">&quot; reactions&quot;</span> &lt;&lt; std::endl;</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#aa33fcee020f5acd8e14aadaf3758ad2f">gridfire::policy::NetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a1d685fd5eb346871af5b8ed677dfcf36" name="a1d685fd5eb346871af5b8ed677dfcf36"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1d685fd5eb346871af5b8ed677dfcf36">&#9670;&#160;</a></span>get_seed_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::set&lt; fourdst::atomic::Species &gt; &amp; PyNetworkPolicy::get_seed_species </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Returns the seed species the policy requires to initialize the network. </p>
+<p>The returned set contains atomic species identifiers (fourdst::atomic::Species) which the policy expects to be present in the initial composition used to build the network.</p>
+<p>Implementations should return a copy or an immutable reference to their internal set of required seed species.</p>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keyword">const</span> <span class="keyword">auto</span> seeds = policy.get_seed_species();</div>
+<div class="line"><span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span> &amp;s : seeds) { std::cout &lt;&lt; s.name() &lt;&lt; std::endl; }</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#afb599d76b423f7a39b322c967302b49b">gridfire::policy::NetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a8506a1f9c22d47c266abe1519ffb9bc0" name="a8506a1f9c22d47c266abe1519ffb9bc0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8506a1f9c22d47c266abe1519ffb9bc0">&#9670;&#160;</a></span>get_status()</h2>
+
+<div class="memitem">
+<div class="memproto">
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+  <td class="mlabels-left">
+      <table class="memname">
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+          <td class="memname"><a class="el" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109">gridfire::policy::NetworkPolicyStatus</a> PyNetworkPolicy::get_status </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
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+</div><div class="memdoc">
+
+<p>Returns the current verification/construction status of the policy. </p>
+<p>The status reports whether the policy has been initialized and whether the constructed network satisfies the policy's key requirements.</p>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line">NetworkPolicyStatus s = policy.getStatus();</div>
+<div class="line"><span class="keywordflow">if</span> (s != NetworkPolicyStatus::INITIALIZED_VERIFIED) { <span class="comment">// handle error }</span></div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a3d0f2aee8ead71da4d421fb659fb30f7">gridfire::policy::NetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="ac2c1ef3897e6491d5ab03e7342075245" name="ac2c1ef3897e6491d5ab03e7342075245"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac2c1ef3897e6491d5ab03e7342075245">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
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+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string PyNetworkPolicy::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Human-readable name for the policy. </p>
+<dl class="section return"><dt>Returns</dt><dd>a std::string identifying the policy implementation (e.g. "MainSequencePolicy").</dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line">std::string n = policy.name();</div>
+<div class="line">std::cout &lt;&lt; <span class="stringliteral">&quot;Using policy: &quot;</span> &lt;&lt; n &lt;&lt; std::endl;</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#aa59c1baf7077a5d35d45ff753b32a565">gridfire::policy::NetworkPolicy</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/python/policy/trampoline/<a class="el" href="py__policy_8h.html">py_policy.h</a></li>
+<li>src/python/policy/trampoline/<a class="el" href="py__policy_8cpp.html">py_policy.cpp</a></li>
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+<a href="#pri-methods">Private Member Functions</a> &#124;
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+  <div class="headertitle"><div class="title">PyPartitionFunction Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;py_partition.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for PyPartitionFunction:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classPyPartitionFunction__inherit__graph.svg" width="158" height="124"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for PyPartitionFunction:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classPyPartitionFunction__coll__graph.svg" width="158" height="124"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:a83aca0bc261734b7d3df8269f730c69b" id="r_a83aca0bc261734b7d3df8269f730c69b"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyPartitionFunction.html#a83aca0bc261734b7d3df8269f730c69b">evaluate</a> (int z, int a, double T9) const override</td></tr>
+<tr class="memdesc:a83aca0bc261734b7d3df8269f730c69b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the partition function for a given isotope.  <br /></td></tr>
+<tr class="separator:a83aca0bc261734b7d3df8269f730c69b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a260df9689bf698970ebf5104977a3dcf" id="r_a260df9689bf698970ebf5104977a3dcf"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyPartitionFunction.html#a260df9689bf698970ebf5104977a3dcf">evaluateDerivative</a> (int z, int a, double T9) const override</td></tr>
+<tr class="memdesc:a260df9689bf698970ebf5104977a3dcf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the temperature derivative of the partition function.  <br /></td></tr>
+<tr class="separator:a260df9689bf698970ebf5104977a3dcf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0f288a01a3ed7fb92fff5d9fd7d56aa8" id="r_a0f288a01a3ed7fb92fff5d9fd7d56aa8"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyPartitionFunction.html#a0f288a01a3ed7fb92fff5d9fd7d56aa8">supports</a> (int z, int a) const override</td></tr>
+<tr class="memdesc:a0f288a01a3ed7fb92fff5d9fd7d56aa8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if this partition function supports an isotope.  <br /></td></tr>
+<tr class="separator:a0f288a01a3ed7fb92fff5d9fd7d56aa8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a07f4d0ff83822dd2800897161d2a3717" id="r_a07f4d0ff83822dd2800897161d2a3717"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyPartitionFunction.html#a07f4d0ff83822dd2800897161d2a3717">type</a> () const override</td></tr>
+<tr class="memdesc:a07f4d0ff83822dd2800897161d2a3717"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the human-readable type of this partition function.  <br /></td></tr>
+<tr class="separator:a07f4d0ff83822dd2800897161d2a3717"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af918b357e38fb82499ad53584557c43d" id="r_af918b357e38fb82499ad53584557c43d"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; PartitionFunction &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyPartitionFunction.html#af918b357e38fb82499ad53584557c43d">clone</a> () const override</td></tr>
+<tr class="memdesc:af918b357e38fb82499ad53584557c43d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Create a deep copy of this PartitionFunction.  <br /></td></tr>
+<tr class="separator:af918b357e38fb82499ad53584557c43d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1partition_1_1PartitionFunction"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1partition_1_1PartitionFunction')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">gridfire::partition::PartitionFunction</a></td></tr>
+<tr class="memitem:a197a0663dcfb4ab4be3b0e14b98391db inherit pub_methods_classgridfire_1_1partition_1_1PartitionFunction" id="r_a197a0663dcfb4ab4be3b0e14b98391db"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a197a0663dcfb4ab4be3b0e14b98391db">~PartitionFunction</a> ()=default</td></tr>
+<tr class="memdesc:a197a0663dcfb4ab4be3b0e14b98391db inherit pub_methods_classgridfire_1_1partition_1_1PartitionFunction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:a197a0663dcfb4ab4be3b0e14b98391db inherit pub_methods_classgridfire_1_1partition_1_1PartitionFunction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="af918b357e38fb82499ad53584557c43d" name="af918b357e38fb82499ad53584557c43d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af918b357e38fb82499ad53584557c43d">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
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+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">gridfire::partition::PartitionFunction</a> &gt; PyPartitionFunction::clone </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">private</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Create a deep copy of this PartitionFunction. </p>
+<dl class="section return"><dt>Returns</dt><dd>Unique pointer to a new PartitionFunction instance with identical state. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The caller owns the returned object and must manage its lifetime. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a677a90f992fd56b8718e36655c33ce6d">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="a83aca0bc261734b7d3df8269f730c69b" name="a83aca0bc261734b7d3df8269f730c69b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a83aca0bc261734b7d3df8269f730c69b">&#9670;&#160;</a></span>evaluate()</h2>
+
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+          <td class="memname">double PyPartitionFunction::evaluate </td>
+          <td>(</td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>a</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">private</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate the partition function for a given isotope. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">z</td><td>Proton number (atomic number) of the isotope; must be &gt;= 1. </td></tr>
+    <tr><td class="paramname">a</td><td>Mass number of the isotope; must be &gt;= z. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K; must be &gt; 0. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Partition function value (dimensionless) at the specified temperature. </dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>Derived implementation supports (z, a) and T9 &gt; 0. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>No side effects; pure function. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a08ee79b7d8723b4e00ee1fc9cdfbe817">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="a260df9689bf698970ebf5104977a3dcf" name="a260df9689bf698970ebf5104977a3dcf"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a260df9689bf698970ebf5104977a3dcf">&#9670;&#160;</a></span>evaluateDerivative()</h2>
+
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+          <td class="memname">double PyPartitionFunction::evaluateDerivative </td>
+          <td>(</td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>a</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">private</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate the temperature derivative of the partition function. </p>
+<p>Computes d/dT (partition function) at the given parameters.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">z</td><td>Proton number (atomic number) of the isotope; must be &gt;= 1. </td></tr>
+    <tr><td class="paramname">a</td><td>Mass number of the isotope; must be &gt;= z. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K; must be &gt; 0. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Temperature derivative of the partition function. </dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>Derived implementation supports (z, a) and T9 &gt; 0. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>No side effects; pure function. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a14009bdaca47f3eddf2c6c023845db5a">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="a0f288a01a3ed7fb92fff5d9fd7d56aa8" name="a0f288a01a3ed7fb92fff5d9fd7d56aa8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0f288a01a3ed7fb92fff5d9fd7d56aa8">&#9670;&#160;</a></span>supports()</h2>
+
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+          <td class="memname">bool PyPartitionFunction::supports </td>
+          <td>(</td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>a</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">private</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Check if this partition function supports an isotope. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">z</td><td>Proton number of the isotope. </td></tr>
+    <tr><td class="paramname">a</td><td>Mass number of the isotope. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if evaluate and evaluateDerivative can be called for this isotope; false otherwise. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>No side effects. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a6df4191d10516477371a0384e1e55bf5">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="a07f4d0ff83822dd2800897161d2a3717" name="a07f4d0ff83822dd2800897161d2a3717"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a07f4d0ff83822dd2800897161d2a3717">&#9670;&#160;</a></span>type()</h2>
+
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+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
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+          <td class="memname">std::string PyPartitionFunction::type </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">private</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get the human-readable type of this partition function. </p>
+<dl class="section return"><dt>Returns</dt><dd>String identifier for the partition function implementation. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>No side effects. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#ab0c67985a972707eac0ebc64417dfb97">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/python/partition/trampoline/<a class="el" href="py__partition_8h.html">py_partition.h</a></li>
+<li>src/python/partition/trampoline/<a class="el" href="py__partition_8cpp.html">py_partition.cpp</a></li>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
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+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+</head>
+<body>
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+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+</table>
+</div>
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+/* @license-end */
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+
+<p>This is the complete list of members for <a class="el" href="classPyReactionChainPolicy.html">PyReactionChainPolicy</a>, including all inherited members.</p>
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+  <tr class="even"><td class="entry"><a class="el" href="classPyReactionChainPolicy.html#a42d2f71522e7f13624c2598597f14809">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classPyReactionChainPolicy.html">PyReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classPyReactionChainPolicy.html#af148bf87fea9ebe61de745913a2fd504">name</a>() const override</td><td class="entry"><a class="el" href="classPyReactionChainPolicy.html">PyReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classPyReactionChainPolicy.html#a8e3c5cdd4c1901bedf93168868a759a9">operator!=</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classPyReactionChainPolicy.html">PyReactionChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac19e354a8bcd28f60783b70d8a761030">gridfire::policy::ReactionChainPolicy::operator!=</a>(const ReactionChainPolicy &amp;other) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
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+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a30420a3881779c822ab06c0405ea7b28">gridfire::policy::ReactionChainPolicy::operator==</a>(const ReactionChainPolicy &amp;other) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classPyReactionChainPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">PyReactionChainPolicy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;py_policy.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for PyReactionChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classPyReactionChainPolicy__inherit__graph.svg" width="190" height="124"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for PyReactionChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classPyReactionChainPolicy__coll__graph.svg" width="190" height="124"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a5fd4ff9137e1d76decf7318066d45969" id="r_a5fd4ff9137e1d76decf7318066d45969"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyReactionChainPolicy.html#a5fd4ff9137e1d76decf7318066d45969">get_reactions</a> () const override</td></tr>
+<tr class="memdesc:a5fd4ff9137e1d76decf7318066d45969"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the ReactionSet describing this chain.  <br /></td></tr>
+<tr class="separator:a5fd4ff9137e1d76decf7318066d45969"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a16f289efd1d92eead3a3ca6fcfceba4d" id="r_a16f289efd1d92eead3a3ca6fcfceba4d"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyReactionChainPolicy.html#a16f289efd1d92eead3a3ca6fcfceba4d">contains</a> (const std::string &amp;id) const override</td></tr>
+<tr class="separator:a16f289efd1d92eead3a3ca6fcfceba4d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab30925d8253ecdabb73ea2b116e9c7da" id="r_ab30925d8253ecdabb73ea2b116e9c7da"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyReactionChainPolicy.html#ab30925d8253ecdabb73ea2b116e9c7da">contains</a> (const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a> &amp;reaction) const override</td></tr>
+<tr class="separator:ab30925d8253ecdabb73ea2b116e9c7da"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0b44991bd6a5edebb861e78a26f783cd" id="r_a0b44991bd6a5edebb861e78a26f783cd"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; ReactionChainPolicy &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyReactionChainPolicy.html#a0b44991bd6a5edebb861e78a26f783cd">clone</a> () const override</td></tr>
+<tr class="separator:a0b44991bd6a5edebb861e78a26f783cd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af148bf87fea9ebe61de745913a2fd504" id="r_af148bf87fea9ebe61de745913a2fd504"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyReactionChainPolicy.html#af148bf87fea9ebe61de745913a2fd504">name</a> () const override</td></tr>
+<tr class="separator:af148bf87fea9ebe61de745913a2fd504"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a42d2f71522e7f13624c2598597f14809" id="r_a42d2f71522e7f13624c2598597f14809"><td class="memItemLeft" align="right" valign="top">uint64_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyReactionChainPolicy.html#a42d2f71522e7f13624c2598597f14809">hash</a> (uint64_t seed) const override</td></tr>
+<tr class="separator:a42d2f71522e7f13624c2598597f14809"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad6671a30c99ad7a80edd60bd43a8a233" id="r_ad6671a30c99ad7a80edd60bd43a8a233"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyReactionChainPolicy.html#ad6671a30c99ad7a80edd60bd43a8a233">operator==</a> (const ReactionChainPolicy &amp;other) const override</td></tr>
+<tr class="separator:ad6671a30c99ad7a80edd60bd43a8a233"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8e3c5cdd4c1901bedf93168868a759a9" id="r_a8e3c5cdd4c1901bedf93168868a759a9"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyReactionChainPolicy.html#a8e3c5cdd4c1901bedf93168868a759a9">operator!=</a> (const ReactionChainPolicy &amp;other) const override</td></tr>
+<tr class="separator:a8e3c5cdd4c1901bedf93168868a759a9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td></tr>
+<tr class="memitem:aa3e6c1e4844fe788aeb08d272070ae13 inherit pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy" id="r_aa3e6c1e4844fe788aeb08d272070ae13"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a> ()=default</td></tr>
+<tr class="separator:aa3e6c1e4844fe788aeb08d272070ae13 inherit pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a30420a3881779c822ab06c0405ea7b28 inherit pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy" id="r_a30420a3881779c822ab06c0405ea7b28"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a30420a3881779c822ab06c0405ea7b28">operator==</a> (const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;other) const =0</td></tr>
+<tr class="separator:a30420a3881779c822ab06c0405ea7b28 inherit pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac19e354a8bcd28f60783b70d8a761030 inherit pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy" id="r_ac19e354a8bcd28f60783b70d8a761030"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac19e354a8bcd28f60783b70d8a761030">operator!=</a> (const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;other) const =0</td></tr>
+<tr class="separator:ac19e354a8bcd28f60783b70d8a761030 inherit pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a0b44991bd6a5edebb861e78a26f783cd" name="a0b44991bd6a5edebb861e78a26f783cd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0b44991bd6a5edebb861e78a26f783cd">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a> &gt; PyReactionChainPolicy::clone </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac24ff49b7715ad3eefea4bed1bf23686">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="ab30925d8253ecdabb73ea2b116e9c7da" name="ab30925d8253ecdabb73ea2b116e9c7da"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab30925d8253ecdabb73ea2b116e9c7da">&#9670;&#160;</a></span>contains() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool PyReactionChainPolicy::contains </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a68239737ada169238251f1994680fc7e">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a16f289efd1d92eead3a3ca6fcfceba4d" name="a16f289efd1d92eead3a3ca6fcfceba4d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a16f289efd1d92eead3a3ca6fcfceba4d">&#9670;&#160;</a></span>contains() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool PyReactionChainPolicy::contains </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>id</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a0c9a42646920ac02c8d1e63dfe6f9461">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a5fd4ff9137e1d76decf7318066d45969" name="a5fd4ff9137e1d76decf7318066d45969"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5fd4ff9137e1d76decf7318066d45969">&#9670;&#160;</a></span>get_reactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a> &amp; PyReactionChainPolicy::get_reactions </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Returns the ReactionSet describing this chain. </p>
+<dl class="section return"><dt>Returns</dt><dd>const reaction::ReactionSet&amp; reference to the chain's reactions.</dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keyword">const</span> reaction::ReactionSet &amp;set = chainPolicy.get_reactions();</div>
+<div class="line">std::cout &lt;&lt; <span class="stringliteral">&quot;Chain contains &quot;</span> &lt;&lt; set.size() &lt;&lt; <span class="stringliteral">&quot; reactions\n&quot;</span>;</div>
+</div><!-- fragment --></dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname"><a class="el" href="classgridfire_1_1exceptions_1_1MissingBaseReactionError.html" title="Exception thrown when a required reaction is missing from the underlying database (e....">gridfire::exceptions::MissingBaseReactionError</a></td><td>may be thrown by concrete implementations at construction time if the required reactions cannot be found in the base reaction set. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ad8bccf78e7fc99d08387aec5015e8849">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a42d2f71522e7f13624c2598597f14809" name="a42d2f71522e7f13624c2598597f14809"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a42d2f71522e7f13624c2598597f14809">&#9670;&#160;</a></span>hash()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">uint64_t PyReactionChainPolicy::hash </td>
+          <td>(</td>
+          <td class="paramtype">uint64_t&#160;</td>
+          <td class="paramname"><em>seed</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a5d1b5640d654f49399145f912e77c19b">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="af148bf87fea9ebe61de745913a2fd504" name="af148bf87fea9ebe61de745913a2fd504"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af148bf87fea9ebe61de745913a2fd504">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string PyReactionChainPolicy::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a41758d921a2d7e83f446aa4fec00d598">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a8e3c5cdd4c1901bedf93168868a759a9" name="a8e3c5cdd4c1901bedf93168868a759a9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8e3c5cdd4c1901bedf93168868a759a9">&#9670;&#160;</a></span>operator!=()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool PyReactionChainPolicy::operator!= </td>
+          <td>(</td>
+          <td class="paramtype">const ReactionChainPolicy &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ad6671a30c99ad7a80edd60bd43a8a233" name="ad6671a30c99ad7a80edd60bd43a8a233"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad6671a30c99ad7a80edd60bd43a8a233">&#9670;&#160;</a></span>operator==()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool PyReactionChainPolicy::operator== </td>
+          <td>(</td>
+          <td class="paramtype">const ReactionChainPolicy &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/python/policy/trampoline/<a class="el" href="py__policy_8h.html">py_policy.h</a></li>
+<li>src/python/policy/trampoline/<a class="el" href="py__policy_8cpp.html">py_policy.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="classPyReactionChainPolicy.html">PyReactionChainPolicy</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
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+</body>
+</html>
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+    [ "contains", "classPyReactionChainPolicy.html#a16f289efd1d92eead3a3ca6fcfceba4d", null ],
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+    [ "name", "classPyReactionChainPolicy.html#af148bf87fea9ebe61de745913a2fd504", null ],
+    [ "operator!=", "classPyReactionChainPolicy.html#a8e3c5cdd4c1901bedf93168868a759a9", null ],
+    [ "operator==", "classPyReactionChainPolicy.html#ad6671a30c99ad7a80edd60bd43a8a233", null ]
+];
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+<div class="header">
+  <div class="summary">
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="classPyScreening-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">PyScreening Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;py_screening.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for PyScreening:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classPyScreening__inherit__graph.svg" width="150" height="124"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for PyScreening:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classPyScreening__coll__graph.svg" width="150" height="124"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:aa67b5f0528006d9c742033b8c5ab3a05" id="r_aa67b5f0528006d9c742033b8c5ab3a05"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyScreening.html#aa67b5f0528006d9c742033b8c5ab3a05">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td></tr>
+<tr class="memdesc:aa67b5f0528006d9c742033b8c5ab3a05"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors for a set of reactions.  <br /></td></tr>
+<tr class="separator:aa67b5f0528006d9c742033b8c5ab3a05"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a68a126de903e1a87a1d7d1cfec8add0f" id="r_a68a126de903e1a87a1d7d1cfec8add0f"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classPyScreening.html#a68a126de903e1a87a1d7d1cfec8add0f">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt; &amp;Y, <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> T9, <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> rho) const override</td></tr>
+<tr class="memdesc:a68a126de903e1a87a1d7d1cfec8add0f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors using CppAD types for automatic differentiation.  <br /></td></tr>
+<tr class="separator:a68a126de903e1a87a1d7d1cfec8add0f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_types_classgridfire_1_1screening_1_1ScreeningModel"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classgridfire_1_1screening_1_1ScreeningModel')"><img src="closed.png" alt="-"/>&#160;Public Types inherited from <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">gridfire::screening::ScreeningModel</a></td></tr>
+<tr class="memitem:a107ff2897f040d6f27f69d56a0bdd28d inherit pub_types_classgridfire_1_1screening_1_1ScreeningModel" id="r_a107ff2897f040d6f27f69d56a0bdd28d"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> = CppAD::AD&lt; double &gt;</td></tr>
+<tr class="memdesc:a107ff2897f040d6f27f69d56a0bdd28d inherit pub_types_classgridfire_1_1screening_1_1ScreeningModel"><td class="mdescLeft">&#160;</td><td class="mdescRight">Alias for CppAD Automatic Differentiation type for double precision.  <br /></td></tr>
+<tr class="separator:a107ff2897f040d6f27f69d56a0bdd28d inherit pub_types_classgridfire_1_1screening_1_1ScreeningModel"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1screening_1_1ScreeningModel"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1screening_1_1ScreeningModel')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">gridfire::screening::ScreeningModel</a></td></tr>
+<tr class="memitem:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1ScreeningModel" id="r_adef175acdbd911527f56a1f1592579a7"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a> ()=default</td></tr>
+<tr class="memdesc:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1ScreeningModel"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1ScreeningModel"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a68a126de903e1a87a1d7d1cfec8add0f" name="a68a126de903e1a87a1d7d1cfec8add0f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a68a126de903e1a87a1d7d1cfec8add0f">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
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+          <td class="memname">std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt; PyScreening::calculateScreeningFactors </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a>&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a>&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">private</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates screening factors using CppAD types for automatic differentiation. </p>
+<p>This is a pure virtual function that provides an overload of <code>calculateScreeningFactors</code> for use with CppAD. It allows the derivatives of the screening factors with respect to abundances, temperature, and density to be computed automatically.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
+    <tr><td class="paramname">species</td><td>A vector of all atomic species involved in the network. </td></tr>
+    <tr><td class="paramname">Y</td><td>The current composition, providing molar abundances (mol/g) for each species. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K, as an AD type. </td></tr>
+    <tr><td class="paramname">rho</td><td>The plasma density in g/cm^3, as an AD type. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of screening factors (dimensionless), as AD types.</dd></dl>
+<p><b>Note</b> This method is essential for including the effects of screening in the Jacobian matrix of the reaction network. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a1da8242c7591ab32453d1e0109999d6c">gridfire::screening::ScreeningModel</a>.</p>
+
+</div>
+</div>
+<a id="aa67b5f0528006d9c742033b8c5ab3a05" name="aa67b5f0528006d9c742033b8c5ab3a05"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa67b5f0528006d9c742033b8c5ab3a05">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; double &gt; PyScreening::calculateScreeningFactors </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">private</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates screening factors for a set of reactions. </p>
+<p>This is a pure virtual function that must be implemented by derived classes. It computes the screening enhancement factor for each reaction in the provided set based on the given plasma conditions.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
+    <tr><td class="paramname">species</td><td>A vector of all atomic species involved in the network. </td></tr>
+    <tr><td class="paramname">Y</td><td>The current composition, providing molar abundances (mol/g) for each species. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The plasma density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of screening factors (dimensionless), one for each reaction in the <code>reactions</code> set, in the same order.</dd></dl>
+<p><b>Pre-conditions</b> </p><ul>
+<li>The size of the <code>Y</code> vector must match the size of the <code>species</code> vector.</li>
+<li><code>T9</code> and <code>rho</code> must be positive.</li>
+</ul>
+<p><b>Post-conditions</b> </p><ul>
+<li>The returned vector will have the same size as the <code>reactions</code> set.</li>
+<li>Each element in the returned vector will be &gt;= 1.0.</li>
+</ul>
+<p><b>Usage</b> </p><div class="fragment"><div class="line"><span class="comment">// Assume &#39;model&#39; is a std::unique_ptr&lt;ScreeningModel&gt; to a concrete implementation</span></div>
+<div class="line"><span class="comment">// and other parameters (reactions, species, Y, T9, rho) are initialized.</span></div>
+<div class="line">std::vector&lt;double&gt; screening_factors = model-&gt;calculateScreeningFactors(</div>
+<div class="line">    reactions, species, Y, T9, rho</div>
+<div class="line">);</div>
+<div class="line"><span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i &lt; reactions.size(); ++i) {</div>
+<div class="line">    <span class="comment">// ... use screening_factors[i] ...</span></div>
+<div class="line">}</div>
+</div><!-- fragment --> 
+<p>Implements <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#ab08c4490f9da18254a7c6f29be1f62ce">gridfire::screening::ScreeningModel</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/python/screening/trampoline/<a class="el" href="py__screening_8h.html">py_screening.h</a></li>
+<li>src/python/screening/trampoline/<a class="el" href="py__screening_8cpp.html">py_screening.cpp</a></li>
+</ul>
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+<tr class="inherit_header pub_methods_classgridfire_1_1solver_1_1SolverContextBase"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1solver_1_1SolverContextBase')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1solver_1_1SolverContextBase.html">gridfire::solver::SolverContextBase</a></td></tr>
+<tr class="memitem:ab1abf9e5ff7f53a6cebe5e00ea5fc0c8 inherit pub_methods_classgridfire_1_1solver_1_1SolverContextBase" id="r_ab1abf9e5ff7f53a6cebe5e00ea5fc0c8"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1SolverContextBase.html#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8">~SolverContextBase</a> ()=default</td></tr>
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+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
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+<h2 class="memtitle"><span class="permalink"><a href="#af18f517d550c037d56c44144c07f1ee8">&#9670;&#160;</a></span>describe()</h2>
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+          <td class="memname">std::vector&lt; std::tuple&lt; std::string, std::string &gt; &gt; PySolverContextBase::describe </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
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+<p>Describe the context for callback functions. </p>
+<dl class="section return"><dt>Returns</dt><dd>A vector of tuples, each containing a string for the parameters name and a string for its type.</dd></dl>
+<p>This method should be overridden by derived classes to provide a description of the context that will be passed to the callback function. The intent of this method is that an end user can investigate the context that will be passed to the callback function, and use this information to craft their own callback function. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1solver_1_1SolverContextBase.html#a9cbef3cabc8524e542613ee50d8860c6">gridfire::solver::SolverContextBase</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/python/solver/trampoline/<a class="el" href="py__solver_8h.html">py_solver.h</a></li>
+<li>src/python/solver/trampoline/<a class="el" href="py__solver_8cpp.html">py_solver.cpp</a></li>
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+  <tr class="even"><td class="entry"><a class="el" href="classSolverPluginInterface.html#a493a30c0ae4b2e1a89b7d03c02c0041c">log_time</a>(double t, double dt)=0</td><td class="entry"><a class="el" href="classSolverPluginInterface.html">SolverPluginInterface</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
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+<title>GridFire: SolverPluginInterface Class Reference</title>
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+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classSolverPluginInterface-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">SolverPluginInterface Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div></div>
+</div><!--header-->
+<div class="contents">
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a5611d046cd2fd4d4200785725854e39b" id="r_a5611d046cd2fd4d4200785725854e39b"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classSolverPluginInterface.html#a5611d046cd2fd4d4200785725854e39b">~SolverPluginInterface</a> () override=default</td></tr>
+<tr class="separator:a5611d046cd2fd4d4200785725854e39b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a493a30c0ae4b2e1a89b7d03c02c0041c" id="r_a493a30c0ae4b2e1a89b7d03c02c0041c"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classSolverPluginInterface.html#a493a30c0ae4b2e1a89b7d03c02c0041c">log_time</a> (double t, double dt)=0</td></tr>
+<tr class="separator:a493a30c0ae4b2e1a89b7d03c02c0041c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
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+<h2 class="memtitle"><span class="permalink"><a href="#a5611d046cd2fd4d4200785725854e39b">&#9670;&#160;</a></span>~SolverPluginInterface()</h2>
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+          <td class="memname">SolverPluginInterface::~SolverPluginInterface </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
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+  </tr>
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+<h2 class="groupheader">Member Function Documentation</h2>
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+<h2 class="memtitle"><span class="permalink"><a href="#a493a30c0ae4b2e1a89b7d03c02c0041c">&#9670;&#160;</a></span>log_time()</h2>
+
+<div class="memitem">
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+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual void SolverPluginInterface::log_time </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>t</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>dt</em>&#160;</td>
+        </tr>
+        <tr>
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+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
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+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/interfaces/solver/<a class="el" href="solver__interfaces_8h.html">solver_interfaces.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
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new file mode 100644
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diff --git a/docs/html/classes.html b/docs/html/classes.html
index d9c21ca0..dca7a0f0 100644
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+<meta name="generator" content="Doxygen 1.9.8"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
 <title>GridFire: Class Index</title>
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  <tbody>
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    <div id="projectbrief">General Purpose Nuclear Network</div>
   </td>
@@ -38,24 +36,19 @@
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+<dd><a class="el" href="classgridfire_1_1exceptions_1_1FailedToPartitionEngineError.html">FailedToPartitionEngineError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html">FileDefinedEngineView</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1FluxValidationResult.html">MultiscalePartitioningEngineView::FluxValidationResult</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="structstd_1_1formatter_3_01gridfire_1_1engine_1_1NetworkJacobian_01_4.html">formatter&lt; gridfire::engine::NetworkJacobian &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd></dl>
 <dl class="classindex even">
 <dt class="alphachar"><a id="letter_G" name="letter_G">G</a></dt>
-<dd><a class="el" href="interfacegridfire__mod_1_1gf__construct__engine__from__policy.html">gf_construct_engine_from_policy</a> (<a class="el" href="namespacegridfire__mod.html">gridfire_mod</a>)</dd><dd><a class="el" href="interfacegridfire__mod_1_1gf__construct__solver__from__engine.html">gf_construct_solver_from_engine</a> (<a class="el" href="namespacegridfire__mod.html">gridfire_mod</a>)</dd><dd><a class="el" href="interfacegridfire__mod_1_1gf__evolve.html">gf_evolve</a> (<a class="el" href="namespacegridfire__mod.html">gridfire_mod</a>)</dd><dd><a class="el" href="interfacegridfire__mod_1_1gf__free.html">gf_free</a> (<a class="el" href="namespacegridfire__mod.html">gridfire_mod</a>)</dd><dd><a class="el" href="interfacegridfire__mod_1_1gf__get__last__error__message.html">gf_get_last_error_message</a> (<a class="el" href="namespacegridfire__mod.html">gridfire_mod</a>)</dd><dd><a class="el" href="interfacegridfire__mod_1_1gf__init.html">gf_init</a> (<a class="el" href="namespacegridfire__mod.html">gridfire_mod</a>)</dd><dd><a class="el" href="interfacegridfire__mod_1_1gf__register__species.html">gf_register_species</a> (<a class="el" href="namespacegridfire__mod.html">gridfire_mod</a>)</dd><dd><a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html">GraphEngine</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a> (<a class="el" href="namespacegridfire__mod.html">gridfire_mod</a>)</dd><dd><a class="el" href="struct_grid_fire_context.html">GridFireContext</a></dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_grid_fire_error.html">GridFireError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html">GroundStatePartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd></dl>
+<dd><a class="el" href="interfacegridfire__mod_1_1gf__construct__engine__from__policy.html">gf_construct_engine_from_policy</a> (<a class="el" href="namespacegridfire__mod.html">gridfire_mod</a>)</dd><dd><a class="el" href="interfacegridfire__mod_1_1gf__construct__solver__from__engine.html">gf_construct_solver_from_engine</a> (<a class="el" href="namespacegridfire__mod.html">gridfire_mod</a>)</dd><dd><a class="el" href="interfacegridfire__mod_1_1gf__evolve.html">gf_evolve</a> (<a class="el" href="namespacegridfire__mod.html">gridfire_mod</a>)</dd><dd><a class="el" href="interfacegridfire__mod_1_1gf__free.html">gf_free</a> (<a class="el" href="namespacegridfire__mod.html">gridfire_mod</a>)</dd><dd><a class="el" href="interfacegridfire__mod_1_1gf__get__last__error__message.html">gf_get_last_error_message</a> (<a class="el" href="namespacegridfire__mod.html">gridfire_mod</a>)</dd><dd><a class="el" href="interfacegridfire__mod_1_1gf__init.html">gf_init</a> (<a class="el" href="namespacegridfire__mod.html">gridfire_mod</a>)</dd><dd><a class="el" href="interfacegridfire__mod_1_1gf__register__species.html">gf_register_species</a> (<a class="el" href="namespacegridfire__mod.html">gridfire_mod</a>)</dd><dd><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a> (<a class="el" href="namespacegridfire__mod.html">gridfire_mod</a>)</dd><dd><a class="el" href="structGridFireContext.html">GridFireContext</a></dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">GridFireError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html">GroundStatePartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd></dl>
 <dl class="classindex odd">
 <dt class="alphachar"><a id="letter_H" name="letter_H">H</a></dt>
-<dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4.html">hash&lt; gridfire::rates::weak::TableAxes &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html">hash&lt; gridfire::reaction::Reaction &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html">hash&lt; gridfire::reaction::ReactionSet &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_hashing_error.html">HashingError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_hot_c_n_o_chain_policy.html">HotCNOChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_hot_c_n_o_i_chain_policy.html">HotCNOIChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_hot_c_n_o_i_i_chain_policy.html">HotCNOIIChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_hot_c_n_o_i_i_i_chain_policy.html">HotCNOIIIChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd></dl>
+<dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1TableAxes_01_4.html">hash&lt; gridfire::rates::weak::TableAxes &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1Reaction_01_4.html">hash&lt; gridfire::reaction::Reaction &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1ReactionSet_01_4.html">hash&lt; gridfire::reaction::ReactionSet &gt;</a> (<a class="el" href="namespacestd.html">std</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1HashingError.html">HashingError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1HotCNOChainPolicy.html">HotCNOChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html">HotCNOIChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html">HotCNOIIChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html">HotCNOIIIChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd></dl>
 <dl class="classindex even">
 <dt class="alphachar"><a id="letter_I" name="letter_I">I</a></dt>
-<dd><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html">RauscherThielemannPartitionFunction::IdentifiedIsotope</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_ill_conditioned_jacobian_error.html">IllConditionedJacobianError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html">IntermediateScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html">InterpolationError</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html">RauscherThielemannPartitionFunction::InterpolationPoints</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_invalid_q_s_e_solution_error.html">InvalidQSESolutionError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html">RauscherThielemannPartitionFunction::IsotopeData</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html">IsotopeGrid</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd></dl>
+<dd><a class="el" href="structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1IdentifiedIsotope.html">RauscherThielemannPartitionFunction::IdentifiedIsotope</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1IllConditionedJacobianError.html">IllConditionedJacobianError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1screening_1_1IntermediateScreeningModel.html">IntermediateScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1InterpolationError.html">InterpolationError</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1InterpolationPoints.html">RauscherThielemannPartitionFunction::InterpolationPoints</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1InvalidQSESolutionError.html">InvalidQSESolutionError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1IsotopeData.html">RauscherThielemannPartitionFunction::IsotopeData</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html">IsotopeGrid</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd></dl>
 <dl class="classindex odd">
 <dt class="alphachar"><a id="letter_J" name="letter_J">J</a></dt>
-<dd><a class="el" href="classgridfire_1_1exceptions_1_1_jacobian_error.html">JacobianError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd></dl>
+<dd><a class="el" href="classgridfire_1_1exceptions_1_1JacobianError.html">JacobianError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd></dl>
 <dl class="classindex even">
 <dt class="alphachar"><a id="letter_K" name="letter_K">K</a></dt>
-<dd><a class="el" href="classgridfire_1_1exceptions_1_1_k_i_n_sol_solver_failure_error.html">KINSolSolverFailureError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd></dl>
+<dd><a class="el" href="classgridfire_1_1exceptions_1_1KINSolSolverFailureError.html">KINSolSolverFailureError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd></dl>
 <dl class="classindex odd">
 <dt class="alphachar"><a id="letter_L" name="letter_L">L</a></dt>
-<dd><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html">LogicalReaclibReaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1_logical_trigger.html">LogicalTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd></dl>
+<dd><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">LogicalReaclibReaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1LogicalTrigger.html">LogicalTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd></dl>
 <dl class="classindex even">
 <dt class="alphachar"><a id="letter_M" name="letter_M">M</a></dt>
-<dd><a class="el" href="classgridfire_1_1policy_1_1_main_sequence_policy.html">MainSequencePolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_main_sequence_reaction_chain_policy.html">MainSequenceReactionChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html">MESANetworkFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_missing_base_reaction_error.html">MissingBaseReactionError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_missing_key_reaction_error.html">MissingKeyReactionError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_missing_seed_species_error.html">MissingSeedSpeciesError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_multi_reaction_chain_policy.html">MultiReactionChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view.html">MultiscalePartitioningEngineView</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd></dl>
+<dd><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">MainSequencePolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html">MainSequenceReactionChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html">MESANetworkFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1MissingBaseReactionError.html">MissingBaseReactionError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1MissingKeyReactionError.html">MissingKeyReactionError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1MissingSeedSpeciesError.html">MissingSeedSpeciesError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">MultiReactionChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">MultiscalePartitioningEngineView</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd></dl>
 <dl class="classindex odd">
 <dt class="alphachar"><a id="letter_N" name="letter_N">N</a></dt>
-<dd><a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1_net_out.html">NetOut</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html">NetworkFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html">NetworkJacobian</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_network_policy.html">NetworkPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1engine_1_1_network_priming_engine_view.html">NetworkPrimingEngineView</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_network_resized_error.html">NetworkResizedError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html">NetworkSolverStrategy</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html">NotTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd></dl>
+<dd><a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="structgridfire_1_1NetOut.html">NetOut</a> (<a class="el" href="namespacegridfire.html">gridfire</a>)</dd><dd><a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html">NetworkFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html">NetworkPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html">NetworkPrimingEngineView</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1NetworkResizedError.html">NetworkResizedError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">NetworkSolverStrategy</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">NotTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd></dl>
 <dl class="classindex even">
 <dt class="alphachar"><a id="letter_O" name="letter_O">O</a></dt>
-<dd><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html">OffDiagonalTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">gridfire::trigger::solver::CVODE</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">OrTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd></dl>
+<dd><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">OffDiagonalTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html">gridfire::trigger::solver::CVODE</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">OrTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd></dl>
 <dl class="classindex odd">
 <dt class="alphachar"><a id="letter_P" name="letter_P">P</a></dt>
-<dd><a class="el" href="classgridfire_1_1partition_1_1_partition_function.html">PartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_policy_error.html">PolicyError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1engine_1_1_graph_engine_1_1_precomputed_reaction.html">GraphEngine::PrecomputedReaction</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="structgridfire_1_1engine_1_1_priming_report.html">PrimingReport</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_proton_proton_chain_policy.html">ProtonProtonChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_proton_proton_i_chain_policy.html">ProtonProtonIChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_proton_proton_i_i_chain_policy.html">ProtonProtonIIChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_proton_proton_i_i_i_chain_policy.html">ProtonProtonIIIChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="class_py_dynamic_engine.html">PyDynamicEngine</a></dd><dd><a class="el" href="class_py_dynamic_engine_view.html">PyDynamicEngineView</a></dd><dd><a class="el" href="class_py_dynamic_network_solver_strategy.html">PyDynamicNetworkSolverStrategy</a></dd><dd><a class="el" href="class_py_engine.html">PyEngine</a></dd><dd><a class="el" href="class_py_engine_view.html">PyEngineView</a></dd><dd><a class="el" href="structgridfire_1_1io_1_1gen_1_1_py_function_def.html">PyFunctionDef</a> (<a class="el" href="namespacegridfire_1_1io_1_1gen.html">gridfire::io::gen</a>)</dd><dd><a class="el" href="class_py_network_file_parser.html">PyNetworkFileParser</a></dd><dd><a class="el" href="class_py_network_policy.html">PyNetworkPolicy</a></dd><dd><a class="el" href="class_py_partition_function.html">PyPartitionFunction</a></dd><dd><a class="el" href="class_py_reaction_chain_policy.html">PyReactionChainPolicy</a></dd><dd><a class="el" href="class_py_screening.html">PyScreening</a></dd><dd><a class="el" href="class_py_solver_context_base.html">PySolverContextBase</a></dd></dl>
+<dd><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">PartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1PolicyError.html">PolicyError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1engine_1_1GraphEngine_1_1PrecomputedReaction.html">GraphEngine::PrecomputedReaction</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html">PrimingReport</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html">ProtonProtonChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html">ProtonProtonIChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html">ProtonProtonIIChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html">ProtonProtonIIIChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classPyDynamicEngine.html">PyDynamicEngine</a></dd><dd><a class="el" href="classPyDynamicEngineView.html">PyDynamicEngineView</a></dd><dd><a class="el" href="classPyDynamicNetworkSolverStrategy.html">PyDynamicNetworkSolverStrategy</a></dd><dd><a class="el" href="classPyEngine.html">PyEngine</a></dd><dd><a class="el" href="classPyEngineView.html">PyEngineView</a></dd><dd><a class="el" href="structgridfire_1_1io_1_1gen_1_1PyFunctionDef.html">PyFunctionDef</a> (<a class="el" href="namespacegridfire_1_1io_1_1gen.html">gridfire::io::gen</a>)</dd><dd><a class="el" href="classPyNetworkFileParser.html">PyNetworkFileParser</a></dd><dd><a class="el" href="classPyNetworkPolicy.html">PyNetworkPolicy</a></dd><dd><a class="el" href="classPyPartitionFunction.html">PyPartitionFunction</a></dd><dd><a class="el" href="classPyReactionChainPolicy.html">PyReactionChainPolicy</a></dd><dd><a class="el" href="classPyScreening.html">PyScreening</a></dd><dd><a class="el" href="classPySolverContextBase.html">PySolverContextBase</a></dd></dl>
 <dl class="classindex even">
 <dt class="alphachar"><a id="letter_Q" name="letter_Q">Q</a></dt>
-<dd><a class="el" href="structgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html">MultiscalePartitioningEngineView::QSEGroup</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_solver.html">MultiscalePartitioningEngineView::QSESolver</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd></dl>
+<dd><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">MultiscalePartitioningEngineView::QSEGroup</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">MultiscalePartitioningEngineView::QSESolver</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd></dl>
 <dl class="classindex odd">
 <dt class="alphachar"><a id="letter_R" name="letter_R">R</a></dt>
-<dd><a class="el" href="structgridfire_1_1reaction_1_1_rate_coefficient_set.html">RateCoefficientSet</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">RateDataRow</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html">RauscherThielemannPartitionDataRecord</a> (<a class="el" href="namespacegridfire_1_1partition_1_1record.html">gridfire::partition::record</a>)</dd><dd><a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html">RauscherThielemannPartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html">ReaclibReaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1engine_1_1_reaction.html">Reaction</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_reaction_chain_policy.html">ReactionChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_reaction_error.html">ReactionError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1engine_1_1_adaptive_engine_view_1_1_reaction_flow.html">AdaptiveEngineView::ReactionFlow</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_reaction_parsing_error.html">ReactionParsingError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html">ReactionRecord</a> (<a class="el" href="namespacegridfire_1_1reaclib.html">gridfire::reaclib</a>)</dd><dd><a class="el" href="classgridfire_1_1engine_1_1_reaction_set.html">ReactionSet</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd></dl>
+<dd><a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">RateCoefficientSet</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html">RateDataRow</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html">RauscherThielemannPartitionDataRecord</a> (<a class="el" href="namespacegridfire_1_1partition_1_1record.html">gridfire::partition::record</a>)</dd><dd><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html">RauscherThielemannPartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html">gridfire::partition</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">ReaclibReaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html">ReactionError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1engine_1_1AdaptiveEngineView_1_1ReactionFlow.html">AdaptiveEngineView::ReactionFlow</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1ReactionParsingError.html">ReactionParsingError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1reaclib_1_1ReactionRecord.html">ReactionRecord</a> (<a class="el" href="namespacegridfire_1_1reaclib.html">gridfire::reaclib</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd></dl>
 <dl class="classindex even">
 <dt class="alphachar"><a id="letter_S" name="letter_S">S</a></dt>
-<dd><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">ScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd><dd><a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html">SimpleReactionListFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html">SimulationTimeTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">gridfire::trigger::solver::CVODE</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_singular_jacobian_error.html">SingularJacobianError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1solver_1_1_solver_context_base.html">SolverContextBase</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_solver_error.html">SolverError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="class_solver_plugin_interface.html">SolverPluginInterface</a></dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_stale_jacobian_error.html">StaleJacobianError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1engine_1_1_step_derivatives.html">StepDerivatives</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_s_u_n_d_i_a_l_s_error.html">SUNDIALSError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd></dl>
+<dd><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">ScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd><dd><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html">SimpleReactionListFileParser</a> (<a class="el" href="namespacegridfire_1_1io.html">gridfire::io</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">SimulationTimeTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html">gridfire::trigger::solver::CVODE</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1SingularJacobianError.html">SingularJacobianError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1solver_1_1SolverContextBase.html">SolverContextBase</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1SolverError.html">SolverError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classSolverPluginInterface.html">SolverPluginInterface</a></dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1StaleJacobianError.html">StaleJacobianError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">StepDerivatives</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1SUNDIALSError.html">SUNDIALSError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd></dl>
 <dl class="classindex odd">
 <dt class="alphachar"><a id="letter_T" name="letter_T">T</a></dt>
-<dd><a class="el" href="classgridfire_1_1utils_1_1_table.html">Table</a> (<a class="el" href="namespacegridfire_1_1utils.html">gridfire::utils</a>)</dd><dd><a class="el" href="classgridfire_1_1utils_1_1_table_base.html">TableBase</a> (<a class="el" href="namespacegridfire_1_1utils.html">gridfire::utils</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_temperature_dependent_chain_policy.html">TemperatureDependentChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html">TimestepCollapseTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html">gridfire::trigger::solver::CVODE</a>)</dd><dd><a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">CVODESolverStrategy::TimestepContext</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd><dd><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1_triple_alpha_chain_policy.html">TripleAlphaChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd></dl>
+<dd><a class="el" href="classgridfire_1_1utils_1_1Table.html">Table</a> (<a class="el" href="namespacegridfire_1_1utils.html">gridfire::utils</a>)</dd><dd><a class="el" href="classgridfire_1_1utils_1_1TableBase.html">TableBase</a> (<a class="el" href="namespacegridfire_1_1utils.html">gridfire::utils</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">TemperatureDependentChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">TimestepCollapseTrigger</a> (<a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html">gridfire::trigger::solver::CVODE</a>)</dd><dd><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">CVODESolverStrategy::TimestepContext</a> (<a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>)</dd><dd><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd><dd><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> (<a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a>)</dd><dd><a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html">TripleAlphaChainPolicy</a> (<a class="el" href="namespacegridfire_1_1policy.html">gridfire::policy</a>)</dd></dl>
 <dl class="classindex even">
 <dt class="alphachar"><a id="letter_U" name="letter_U">U</a></dt>
-<dd><a class="el" href="classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html">UnableToSetNetworkReactionsError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.html">UninitializedJacobianError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_unknown_jacobian_error.html">UnknownJacobianError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_solver_1_1_user_data.html">MultiscalePartitioningEngineView::QSESolver::UserData</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_utility_error.html">UtilityError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd></dl>
+<dd><a class="el" href="classgridfire_1_1exceptions_1_1UnableToSetNetworkReactionsError.html">UnableToSetNetworkReactionsError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1UninitializedJacobianError.html">UninitializedJacobianError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1UnknownJacobianError.html">UnknownJacobianError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver_1_1UserData.html">MultiscalePartitioningEngineView::QSESolver::UserData</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1UtilityError.html">UtilityError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd></dl>
 <dl class="classindex odd">
 <dt class="alphachar"><a id="letter_W" name="letter_W">W</a></dt>
-<dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html">WeakRateDerivatives</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">WeakRateInterpolator</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">WeakRatePayload</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1_weak_reaclib_reaction.html">WeakReaclibReaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">WeakReaction</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">WeakReactionEntry</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html">WeakReactionMap</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">WeakScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd></dl>
+<dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives.html">WeakRateDerivatives</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">WeakRateInterpolator</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html">WeakRatePayload</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html">WeakReaclibReaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">WeakReaction</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">WeakReactionEntry</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html">WeakReactionMap</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html">WeakScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd></dl>
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diff --git a/docs/html/classgridfire_1_1engine_1_1AdaptiveEngineView-members.html b/docs/html/classgridfire_1_1engine_1_1AdaptiveEngineView-members.html
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <div class="headertitle"><div class="title">gridfire::engine::AdaptiveEngineView Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#aea8914f56e34445aacf0a5d0af073897">AdaptiveEngineView</a>(DynamicEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a6f13f42773dec03a6b3e90b4997d42fb">calculateAllReactionFlows</a>(const NetIn &amp;netIn) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a17bbc9c0d480a8533acb193cb9a46fea">calculateEpsDerivatives</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a5bd0174105e836dd98c71ab495357e5b">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a5de5211bc99a1995143307284be6df4a">calculateRHSAndEnergy</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a77d4c08eecfad5cc414161d0fc8db946">collectComposition</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a0a49d174e105adb3ffd9cf98ff58db3e">Config</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a99ffb65b98dcbc1eae8643c25dbffe91">cullReactionsByFlow</a>(const std::vector&lt; ReactionFlow &gt; &amp;allFlows, const std::unordered_set&lt; fourdst::atomic::Species &gt; &amp;reachableSpecies, const fourdst::composition::Composition &amp;comp, double maxFlow) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#aab32396ad3ab20960bfd505bb6128ff0">finalizeActiveSet</a>(const std::vector&lt; const reaction::Reaction * &gt; &amp;finalReactions)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a1bc1c462fe57cc30af5553c353e43db8">findReachableSpecies</a>(const NetIn &amp;netIn) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a2a44dfae512b370bad6b977330e0636a">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a1b7b3b0b449d0859d57f99188cdd83d6">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const std::vector&lt; fourdst::atomic::Species &gt; &amp;activeSpecies) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#ae894f46c67a8b8e02b8988a6b73dc9e5">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a754445722193f11ae534b7c0afa9b8aa">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a69122f748b873b872aa86350061b1b5c">getBaseEngine</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ac5a0def6b6af0bd93bf9057c25f048ff">getDepth</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a722ea6e07d46f739c29ad681c7500f8c">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#aaa2d47f44e5bb4d9660d7c017cc5085c">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#acbd5b36262fa7d40f3274f4be6f0b8f6">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a420666d17650736e20402514294f9a14">getSpeciesDestructionTimescales</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#ad7a82578006e5c55ca7716e7ab7e710c">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a5166197fd61060b2a9a445f707ee871b">getSpeciesStatus</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#ade5dad29a79209e677b259a9b28c5133">getSpeciesTimescales</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#aae6d8bab169721f0b89682ce8c4b4f10">getStoichiometryMatrixEntry</a>(const fourdst::atomic::Species &amp;species, const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a6c08b4235996d12472d2a327eab8e984">isStale</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#ae8810c067d301b2f620869b0a5c8d5ce">LogManager</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a90a8fa566ca9fe2b74427ea497353e1b">m_activeReactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8c7bf0f0e5ad83821e3959c47c81cd60">m_activeSpecies</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a541f54469c3d2d6ab7671b19057b4341">m_baseEngine</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#ac68b44310985613bb5736dd32d415734">m_config</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8eba901e7c19989a9818ec8cbf1ebb7f">m_isStale</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a60c4792822f671f094a86378265a416a">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a24cc7e1a7471d707707b4d44ebd81068">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a955a337f89a375637ac48071be45c54c">primeEngine</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a2444b9ed3bc61920ce23c546444269e4">rebuild</a>(const fourdst::composition::CompositionAbstract &amp;comp, BuildDepthType depth)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a85e70c0ff022c31702472aa39fc64816">rescueEdgeSpeciesDestructionChannel</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho, const std::vector&lt; fourdst::atomic::Species &gt; &amp;activeSpecies, const reaction::ReactionSet &amp;activeReactions) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a21367fa61169e6f5185bc91b40cc04be">RescueSet</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a5dbfcafa606c3242dc4ced62c2494a2d">setNetworkReactions</a>(const reaction::ReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#ab050409db954a3fa593633f9d2cd5d89">setScreeningModel</a>(screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e">update</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a63837a6a4343a2ac6a61e21576b62655">validateState</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html#af0ea99416c28933d364a872fc6aff556">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html">gridfire::engine::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a17d63e853d6efca31064e9147c80d497">~EngineView</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html">gridfire::engine::EngineView&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-types">Private Types</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1engine_1_1AdaptiveEngineView-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::engine::AdaptiveEngineView Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>An engine view that dynamically adapts the reaction network based on runtime conditions.  
+ <a href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#details">More...</a></p>
+
+<p><code>#include &lt;engine_adaptive.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::engine::AdaptiveEngineView:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1engine_1_1AdaptiveEngineView__inherit__graph.svg" width="408" height="212"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::engine::AdaptiveEngineView:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1engine_1_1AdaptiveEngineView__coll__graph.svg" width="100%" height="600"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1AdaptiveEngineView_1_1ReactionFlow.html">ReactionFlow</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A struct to hold a reaction and its flow rate.  <a href="structgridfire_1_1engine_1_1AdaptiveEngineView_1_1ReactionFlow.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:aea8914f56e34445aacf0a5d0af073897" id="r_aea8914f56e34445aacf0a5d0af073897"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#aea8914f56e34445aacf0a5d0af073897">AdaptiveEngineView</a> (<a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a> &amp;baseEngine)</td></tr>
+<tr class="memdesc:aea8914f56e34445aacf0a5d0af073897"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs an <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a>.  <br /></td></tr>
+<tr class="separator:aea8914f56e34445aacf0a5d0af073897"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8db6ba52f454c136ee0a1335436fab6e" id="r_a8db6ba52f454c136ee0a1335436fab6e"><td class="memItemLeft" align="right" valign="top">fourdst::composition::Composition&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e">update</a> (const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;netIn) override</td></tr>
+<tr class="memdesc:a8db6ba52f454c136ee0a1335436fab6e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Updates the active species and reactions based on the current conditions.  <br /></td></tr>
+<tr class="separator:a8db6ba52f454c136ee0a1335436fab6e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6c08b4235996d12472d2a327eab8e984" id="r_a6c08b4235996d12472d2a327eab8e984"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a6c08b4235996d12472d2a327eab8e984">isStale</a> (const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;netIn) override</td></tr>
+<tr class="memdesc:a6c08b4235996d12472d2a327eab8e984"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if the engine's internal state is stale.  <br /></td></tr>
+<tr class="separator:a6c08b4235996d12472d2a327eab8e984"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aaa2d47f44e5bb4d9660d7c017cc5085c" id="r_aaa2d47f44e5bb4d9660d7c017cc5085c"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#aaa2d47f44e5bb4d9660d7c017cc5085c">getNetworkSpecies</a> () const override</td></tr>
+<tr class="memdesc:aaa2d47f44e5bb4d9660d7c017cc5085c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the list of active species in the network.  <br /></td></tr>
+<tr class="separator:aaa2d47f44e5bb4d9660d7c017cc5085c"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a5de5211bc99a1995143307284be6df4a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the right-hand side (dY/dt) and energy generation for the active species.  <br /></td></tr>
+<tr class="separator:a5de5211bc99a1995143307284be6df4a"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a17bbc9c0d480a8533acb193cb9a46fea"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a2a44dfae512b370bad6b977330e0636a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the Jacobian matrix for the active species.  <br /></td></tr>
+<tr class="separator:a2a44dfae512b370bad6b977330e0636a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1b7b3b0b449d0859d57f99188cdd83d6" id="r_a1b7b3b0b449d0859d57f99188cdd83d6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a1b7b3b0b449d0859d57f99188cdd83d6">generateJacobianMatrix</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const std::vector&lt; fourdst::atomic::Species &gt; &amp;activeSpecies) const override</td></tr>
+<tr class="memdesc:a1b7b3b0b449d0859d57f99188cdd83d6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the Jacobian matrix for some set of active species such that that set is a subset of the active species in the view.  <br /></td></tr>
+<tr class="separator:a1b7b3b0b449d0859d57f99188cdd83d6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae894f46c67a8b8e02b8988a6b73dc9e5" id="r_ae894f46c67a8b8e02b8988a6b73dc9e5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#ae894f46c67a8b8e02b8988a6b73dc9e5">generateJacobianMatrix</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const <a class="el" href="namespacegridfire_1_1engine.html#af5175018d2d1e78a8826dd33ec6d675f">SparsityPattern</a> &amp;sparsityPattern) const override</td></tr>
+<tr class="memdesc:ae894f46c67a8b8e02b8988a6b73dc9e5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the Jacobian matrix for the active species with a given sparsity pattern.  <br /></td></tr>
+<tr class="separator:ae894f46c67a8b8e02b8988a6b73dc9e5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a754445722193f11ae534b7c0afa9b8aa" id="r_a754445722193f11ae534b7c0afa9b8aa"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a754445722193f11ae534b7c0afa9b8aa">generateStoichiometryMatrix</a> () override</td></tr>
+<tr class="memdesc:a754445722193f11ae534b7c0afa9b8aa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the stoichiometry matrix for the active reactions and species.  <br /></td></tr>
+<tr class="separator:a754445722193f11ae534b7c0afa9b8aa"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aae6d8bab169721f0b89682ce8c4b4f10" id="r_aae6d8bab169721f0b89682ce8c4b4f10"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#aae6d8bab169721f0b89682ce8c4b4f10">getStoichiometryMatrixEntry</a> (const fourdst::atomic::Species &amp;species, const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;reaction) const override</td></tr>
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+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-types" name="pri-types"></a>
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+<tr class="memdesc:a99ffb65b98dcbc1eae8643c25dbffe91"><td class="mdescLeft">&#160;</td><td class="mdescRight">Culls reactions from the network based on their flow rates.  <br /></td></tr>
+<tr class="separator:a99ffb65b98dcbc1eae8643c25dbffe91"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a85e70c0ff022c31702472aa39fc64816" id="r_a85e70c0ff022c31702472aa39fc64816"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a21367fa61169e6f5185bc91b40cc04be">RescueSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a85e70c0ff022c31702472aa39fc64816">rescueEdgeSpeciesDestructionChannel</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho, const std::vector&lt; fourdst::atomic::Species &gt; &amp;activeSpecies, const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;activeReactions) const</td></tr>
+<tr class="separator:a85e70c0ff022c31702472aa39fc64816"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aab32396ad3ab20960bfd505bb6128ff0" id="r_aab32396ad3ab20960bfd505bb6128ff0"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#aab32396ad3ab20960bfd505bb6128ff0">finalizeActiveSet</a> (const std::vector&lt; const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> * &gt; &amp;finalReactions)</td></tr>
+<tr class="memdesc:aab32396ad3ab20960bfd505bb6128ff0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Finalizes the set of active species and reactions.  <br /></td></tr>
+<tr class="separator:aab32396ad3ab20960bfd505bb6128ff0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:ac68b44310985613bb5736dd32d415734" id="r_ac68b44310985613bb5736dd32d415734"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a0a49d174e105adb3ffd9cf98ff58db3e">Config</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#ac68b44310985613bb5736dd32d415734">m_config</a> = Config::getInstance()</td></tr>
+<tr class="memdesc:ac68b44310985613bb5736dd32d415734"><td class="mdescLeft">&#160;</td><td class="mdescRight">A reference to the singleton Config instance, used for retrieving configuration parameters.  <br /></td></tr>
+<tr class="separator:ac68b44310985613bb5736dd32d415734"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a60c4792822f671f094a86378265a416a" id="r_a60c4792822f671f094a86378265a416a"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a60c4792822f671f094a86378265a416a">m_logger</a> = LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="memdesc:a60c4792822f671f094a86378265a416a"><td class="mdescLeft">&#160;</td><td class="mdescRight">A pointer to the logger instance, used for logging messages.  <br /></td></tr>
+<tr class="separator:a60c4792822f671f094a86378265a416a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a541f54469c3d2d6ab7671b19057b4341" id="r_a541f54469c3d2d6ab7671b19057b4341"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a541f54469c3d2d6ab7671b19057b4341">m_baseEngine</a></td></tr>
+<tr class="memdesc:a541f54469c3d2d6ab7671b19057b4341"><td class="mdescLeft">&#160;</td><td class="mdescRight">The underlying engine to which this view delegates calculations.  <br /></td></tr>
+<tr class="separator:a541f54469c3d2d6ab7671b19057b4341"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8c7bf0f0e5ad83821e3959c47c81cd60" id="r_a8c7bf0f0e5ad83821e3959c47c81cd60"><td class="memItemLeft" align="right" valign="top">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8c7bf0f0e5ad83821e3959c47c81cd60">m_activeSpecies</a></td></tr>
+<tr class="memdesc:a8c7bf0f0e5ad83821e3959c47c81cd60"><td class="mdescLeft">&#160;</td><td class="mdescRight">The set of species that are currently active in the network.  <br /></td></tr>
+<tr class="separator:a8c7bf0f0e5ad83821e3959c47c81cd60"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a90a8fa566ca9fe2b74427ea497353e1b" id="r_a90a8fa566ca9fe2b74427ea497353e1b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a90a8fa566ca9fe2b74427ea497353e1b">m_activeReactions</a></td></tr>
+<tr class="memdesc:a90a8fa566ca9fe2b74427ea497353e1b"><td class="mdescLeft">&#160;</td><td class="mdescRight">The set of reactions that are currently active in the network.  <br /></td></tr>
+<tr class="separator:a90a8fa566ca9fe2b74427ea497353e1b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8eba901e7c19989a9818ec8cbf1ebb7f" id="r_a8eba901e7c19989a9818ec8cbf1ebb7f"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8eba901e7c19989a9818ec8cbf1ebb7f">m_isStale</a> = true</td></tr>
+<tr class="memdesc:a8eba901e7c19989a9818ec8cbf1ebb7f"><td class="mdescLeft">&#160;</td><td class="mdescRight">A flag indicating whether the view is stale and needs to be updated.  <br /></td></tr>
+<tr class="separator:a8eba901e7c19989a9818ec8cbf1ebb7f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>An engine view that dynamically adapts the reaction network based on runtime conditions. </p>
+<p>This class implements an <a class="el" href="classgridfire_1_1engine_1_1EngineView.html" title="Abstract base class for a &quot;view&quot; of a reaction network engine.">EngineView</a> that dynamically culls species and reactions from the full reaction network based on their reaction flow rates and connectivity. This allows for efficient simulation of reaction networks by focusing computational effort on the most important species and reactions.</p>
+<p>The <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a> maintains a subset of "active" species and reactions, and maps between the full network indices and the active subset indices. This allows the base engine to operate on the full network data, while the <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a> provides a reduced view for external clients.</p>
+<p>The adaptation process is driven by the <code><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">update()</a></code> method, which performs the following steps:</p><ol type="1">
+<li><b>Reaction Flow Calculation:</b> Calculates the molar reaction flow rate for each reaction in the full network based on the current temperature, density, and composition.</li>
+<li><b>Reaction Culling:</b> Culls reactions with flow rates below a threshold, determined by a relative culling threshold multiplied by the maximum flow rate.</li>
+<li><b>Connectivity Analysis:</b> Performs a connectivity analysis to identify species that are reachable from the initial fuel species through the culled reaction network.</li>
+<li><b>Species Culling:</b> Culls species that are not reachable from the initial fuel.</li>
+<li><b>Index Map Construction:</b> Constructs index maps to map between the full network indices and the active subset indices for species and reactions.</li>
+</ol>
+<p>&lt;DynamicEngine&gt;</p>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="engine__abstract_8h.html" title="Abstract interfaces for reaction network engines in GridFire.">engine_abstract.h</a> </dd>
+<dd>
+<a class="el" href="engine__view__abstract_8h.html" title="Abstract interfaces for engine &quot;views&quot; in GridFire.">engine_view_abstract.h</a> </dd>
+<dd>
+<a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">AdaptiveEngineView::update()</a> </dd></dl>
+</div><h2 class="groupheader">Member Typedef Documentation</h2>
+<a id="a0a49d174e105adb3ffd9cf98ff58db3e" name="a0a49d174e105adb3ffd9cf98ff58db3e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0a49d174e105adb3ffd9cf98ff58db3e">&#9670;&#160;</a></span>Config</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">using <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a0a49d174e105adb3ffd9cf98ff58db3e">gridfire::engine::AdaptiveEngineView::Config</a> =  fourdst::config::Config</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae8810c067d301b2f620869b0a5c8d5ce" name="ae8810c067d301b2f620869b0a5c8d5ce"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae8810c067d301b2f620869b0a5c8d5ce">&#9670;&#160;</a></span>LogManager</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">using <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#ae8810c067d301b2f620869b0a5c8d5ce">gridfire::engine::AdaptiveEngineView::LogManager</a> =  fourdst::logging::LogManager</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a21367fa61169e6f5185bc91b40cc04be" name="a21367fa61169e6f5185bc91b40cc04be"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a21367fa61169e6f5185bc91b40cc04be">&#9670;&#160;</a></span>RescueSet</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">typedef std::pair&lt;std::unordered_set&lt;const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a>*&gt;, std::unordered_set&lt;fourdst::atomic::Species&gt; &gt; <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a21367fa61169e6f5185bc91b40cc04be">gridfire::engine::AdaptiveEngineView::RescueSet</a></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="aea8914f56e34445aacf0a5d0af073897" name="aea8914f56e34445aacf0a5d0af073897"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aea8914f56e34445aacf0a5d0af073897">&#9670;&#160;</a></span>AdaptiveEngineView()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::engine::AdaptiveEngineView::AdaptiveEngineView </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a> &amp;&#160;</td>
+          <td class="paramname"><em>baseEngine</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructs an <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a>. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">baseEngine</td><td>The underlying <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> to which this view delegates calculations.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>Initializes the active species and reactions to the full network, and constructs the initial index maps. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a6f13f42773dec03a6b3e90b4997d42fb" name="a6f13f42773dec03a6b3e90b4997d42fb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6f13f42773dec03a6b3e90b4997d42fb">&#9670;&#160;</a></span>calculateAllReactionFlows()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::pair&lt; std::vector&lt; <a class="el" href="structgridfire_1_1engine_1_1AdaptiveEngineView_1_1ReactionFlow.html">AdaptiveEngineView::ReactionFlow</a> &gt;, fourdst::composition::Composition &gt; gridfire::engine::AdaptiveEngineView::calculateAllReactionFlows </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the molar reaction flow rate for all reactions in the full network. </p>
+<p>This method iterates through all reactions in the base engine's network and calculates their molar flow rates based on the provided network input conditions (temperature, density, and composition). It also constructs a vector of molar abundances for all species in the full network.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>The current network input, containing temperature, density, and composition. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A pair with the first element a vector of <a class="el" href="structgridfire_1_1engine_1_1AdaptiveEngineView_1_1ReactionFlow.html" title="A struct to hold a reaction and its flow rate.">ReactionFlow</a> structs, each containing a pointer to a reaction and its calculated flow rate and the second being a composition object where species which were not present in netIn but are present in the definition of the base engine are registered but have 0 mass fraction.</dd></dl>
+<dl class="section user"><dt>Algorithm:</dt><dd><ol type="1">
+<li>Iterates through all species in the base engine's network.</li>
+<li>For each species, it retrieves the molar abundance from <code>netIn.composition</code>. If the species is not found, its abundance is set to 0.0.</li>
+<li>Converts the temperature from Kelvin to T9.</li>
+<li>Iterates through all reactions in the base engine's network.</li>
+<li>For each reaction, it calls the base engine's <code>calculateMolarReactionFlow</code> to get the flow rate.</li>
+<li>Stores the reaction pointer and its flow rate in a <code><a class="el" href="structgridfire_1_1engine_1_1AdaptiveEngineView_1_1ReactionFlow.html" title="A struct to hold a reaction and its flow rate.">ReactionFlow</a></code> struct and adds it to the returned vector. </li>
+</ol>
+</dd></dl>
+
+</div>
+</div>
+<a id="a17bbc9c0d480a8533acb193cb9a46fea" name="a17bbc9c0d480a8533acb193cb9a46fea"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a17bbc9c0d480a8533acb193cb9a46fea">&#9670;&#160;</a></span>calculateEpsDerivatives()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html">EnergyDerivatives</a> gridfire::engine::AdaptiveEngineView::calculateEpsDerivatives </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The current composition of the system. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A struct containing the derivatives of the energy generation rate with respect to temperature and density. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ada6a1295a92c2aede841672ecae0cede">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a5bd0174105e836dd98c71ab495357e5b" name="a5bd0174105e836dd98c71ab495357e5b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5bd0174105e836dd98c71ab495357e5b">&#9670;&#160;</a></span>calculateMolarReactionFlow()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::engine::AdaptiveEngineView::calculateMolarReactionFlow </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the molar reaction flow for a given reaction in the active network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The reaction for which to calculate the flow. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Molar flow rate for the reaction (e.g., mol/g/s).</dd></dl>
+<p>This method maps the culled abundances to the full network abundances and calls the base engine to calculate the molar reaction flow.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a> is stale (i.e., <code><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">update()</a></code> has not been called). </td></tr>
+    <tr><td class="paramname">std::runtime_error</td><td>If the reaction is not part of the active reactions in the adaptive engine view. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aa57fa5e58b98a03fba31bcddda8001d4">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a5de5211bc99a1995143307284be6df4a" name="a5de5211bc99a1995143307284be6df4a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5de5211bc99a1995143307284be6df4a">&#9670;&#160;</a></span>calculateRHSAndEnergy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; <a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt; gridfire::engine::AdaptiveEngineView::calculateRHSAndEnergy </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the right-hand side (dY/dt) and energy generation for the active species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The current composition of the system. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html" title="Structure holding derivatives and energy generation for a network step.">StepDerivatives</a> struct containing the derivatives of the active species and the nuclear energy generation rate.</dd></dl>
+<p>This method maps the culled abundances to the full network abundances, calls the base engine to calculate the RHS and energy generation, and then maps the full network derivatives back to the culled derivatives.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a> is stale (i.e., <code><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">update()</a></code> has not been called). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">AdaptiveEngineView::update()</a> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1Engine.html#a764fc091c72c12c8529105d7c96badb2">gridfire::engine::Engine</a>.</p>
+
+</div>
+</div>
+<a id="a77d4c08eecfad5cc414161d0fc8db946" name="a77d4c08eecfad5cc414161d0fc8db946"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a77d4c08eecfad5cc414161d0fc8db946">&#9670;&#160;</a></span>collectComposition()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::composition::Composition gridfire::engine::AdaptiveEngineView::collectComposition </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Collect the composition of the base engine, ensure all active species are registered, and pass the composition back to the caller. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The current composition of the system. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The density in g/cm^3.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section note"><dt>Note</dt><dd>This function ensures that the state of both the base engine and the adaptive view are synchronized in the result back to the caller </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a41877719ae5e8de53c1692c7cf9bfbfc">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a99ffb65b98dcbc1eae8643c25dbffe91" name="a99ffb65b98dcbc1eae8643c25dbffe91"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a99ffb65b98dcbc1eae8643c25dbffe91">&#9670;&#160;</a></span>cullReactionsByFlow()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> * &gt; gridfire::engine::AdaptiveEngineView::cullReactionsByFlow </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; <a class="el" href="structgridfire_1_1engine_1_1AdaptiveEngineView_1_1ReactionFlow.html">ReactionFlow</a> &gt; &amp;&#160;</td>
+          <td class="paramname"><em>allFlows</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_set&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>reachableSpecies</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>maxFlow</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Culls reactions from the network based on their flow rates. </p>
+<p>This method filters the list of all reactions, keeping only those with a flow rate above an absolute culling threshold. The threshold is calculated by multiplying the maximum flow rate by a relative culling threshold read from the configuration.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">allFlows</td><td>A vector of all reactions and their flow rates. </td></tr>
+    <tr><td class="paramname">reachableSpecies</td><td>A set of all species reachable from the initial fuel. </td></tr>
+    <tr><td class="paramname">comp</td><td>The current composition of the system. </td></tr>
+    <tr><td class="paramname">maxFlow</td><td>The maximum reaction flow rate in the network. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of pointers to the reactions that have been kept after culling.</dd></dl>
+<dl class="section user"><dt>Algorithm:</dt><dd><ol type="1">
+<li>Retrieves the <code>RelativeCullingThreshold</code> from the configuration.</li>
+<li>Calculates the <code>absoluteCullingThreshold</code> by multiplying <code>maxFlow</code> with the relative threshold.</li>
+<li>Iterates through <code>allFlows</code>.</li>
+<li>A reaction is kept if its <code>flowRate</code> is greater than the <code>absoluteCullingThreshold</code>.</li>
+<li>The pointers to the kept reactions are stored in a vector and returned. </li>
+</ol>
+</dd></dl>
+
+</div>
+</div>
+<a id="aab32396ad3ab20960bfd505bb6128ff0" name="aab32396ad3ab20960bfd505bb6128ff0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aab32396ad3ab20960bfd505bb6128ff0">&#9670;&#160;</a></span>finalizeActiveSet()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::AdaptiveEngineView::finalizeActiveSet </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> * &gt; &amp;&#160;</td>
+          <td class="paramname"><em>finalReactions</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Finalizes the set of active species and reactions. </p>
+<p>This method takes the final list of culled reactions and populates the <code>m_activeReactions</code> and <code>m_activeSpecies</code> members. The active species are determined by collecting all reactants and products from the final reactions. The active species list is then sorted by mass.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">finalReactions</td><td>A vector of pointers to the reactions to be included in the active set.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section post"><dt>Postcondition</dt><dd><ul>
+<li><code>m_activeReactions</code> is cleared and populated with the reactions from <code>finalReactions</code>.</li>
+<li><code>m_activeSpecies</code> is cleared and populated with all unique species present in <code>finalReactions</code>.</li>
+<li><code>m_activeSpecies</code> is sorted by atomic mass. </li>
+</ul>
+</dd></dl>
+
+</div>
+</div>
+<a id="a1bc1c462fe57cc30af5553c353e43db8" name="a1bc1c462fe57cc30af5553c353e43db8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1bc1c462fe57cc30af5553c353e43db8">&#9670;&#160;</a></span>findReachableSpecies()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_set&lt; Species &gt; gridfire::engine::AdaptiveEngineView::findReachableSpecies </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Finds all species that are reachable from the initial fuel through the reaction network. </p>
+<p>This method performs a connectivity analysis to identify all species that can be produced starting from the initial fuel species. A species is considered part of the initial fuel if its mass fraction is above a certain threshold (<code>ABUNDANCE_FLOOR</code>).</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>The current network input, containing the initial composition. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>An unordered set of all reachable species.</dd></dl>
+<dl class="section user"><dt>Algorithm:</dt><dd><ol type="1">
+<li>Initializes a set <code>reachable</code> and a queue <code>to_visit</code> with the initial fuel species.</li>
+<li>Iteratively processes the reaction network until no new species can be reached.</li>
+<li>In each pass, it iterates through all reactions in the base engine's network.</li>
+<li>If all reactants of a reaction are in the <code>reachable</code> set, all products of that reaction are added to the <code>reachable</code> set.</li>
+<li>The process continues until a full pass over all reactions does not add any new species to the <code>reachable</code> set. </li>
+</ol>
+</dd></dl>
+
+</div>
+</div>
+<a id="a2a44dfae512b370bad6b977330e0636a" name="a2a44dfae512b370bad6b977330e0636a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2a44dfae512b370bad6b977330e0636a">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[1/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> gridfire::engine::AdaptiveEngineView::generateJacobianMatrix </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generates the Jacobian matrix for the active species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The current composition of the system. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The density in g/cm^3.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method maps the culled abundances to the full network abundances and calls the base engine to generate the Jacobian matrix.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a> is stale (i.e., <code><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">update()</a></code> has not been called). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">AdaptiveEngineView::update()</a> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a53276f09346b531f8676db355e1219eb">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="ae894f46c67a8b8e02b8988a6b73dc9e5" name="ae894f46c67a8b8e02b8988a6b73dc9e5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae894f46c67a8b8e02b8988a6b73dc9e5">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[2/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> gridfire::engine::AdaptiveEngineView::generateJacobianMatrix </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1engine.html#af5175018d2d1e78a8826dd33ec6d675f">SparsityPattern</a> &amp;&#160;</td>
+          <td class="paramname"><em>sparsityPattern</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generates the Jacobian matrix for the active species with a given sparsity pattern. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The current composition of the system. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The density in g/cm^3. </td></tr>
+    <tr><td class="paramname">sparsityPattern</td><td>The sparsity pattern to use for the Jacobian matrix.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method maps the culled abundances to the full network abundances and calls the base engine to generate the Jacobian matrix.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a> is stale (i.e., <code><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">update()</a></code> has not been called). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">AdaptiveEngineView::update()</a> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a51d55a21be28e372021b2b8e5ecdc551">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a1b7b3b0b449d0859d57f99188cdd83d6" name="a1b7b3b0b449d0859d57f99188cdd83d6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1b7b3b0b449d0859d57f99188cdd83d6">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[3/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> gridfire::engine::AdaptiveEngineView::generateJacobianMatrix </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>activeSpecies</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generates the Jacobian matrix for some set of active species such that that set is a subset of the active species in the view. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The current composition of the system. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The density in g/cm^3. </td></tr>
+    <tr><td class="paramname">activeSpecies</td><td>The list of active species for which to generate the Jacobian.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method maps the culled abundances to the full network abundances and calls the base engine to generate the Jacobian matrix.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a> is stale (i.e., <code><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">update()</a></code> has not been called). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">AdaptiveEngineView::update()</a> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a15d53dac8b622a3b7d0f928a3995dbde">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a754445722193f11ae534b7c0afa9b8aa" name="a754445722193f11ae534b7c0afa9b8aa"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a754445722193f11ae534b7c0afa9b8aa">&#9670;&#160;</a></span>generateStoichiometryMatrix()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::AdaptiveEngineView::generateStoichiometryMatrix </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generates the stoichiometry matrix for the active reactions and species. </p>
+<p>This method calls the base engine to generate the stoichiometry matrix.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a> is stale (i.e., <code><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">update()</a></code> has not been called). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section note"><dt>Note</dt><dd>The stoichiometry matrix generated by the base engine is assumed to be consistent with the active species and reactions in this view. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a5e2c45a3e415b53e41def8f743f93464">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a69122f748b873b872aa86350061b1b5c" name="a69122f748b873b872aa86350061b1b5c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a69122f748b873b872aa86350061b1b5c">&#9670;&#160;</a></span>getBaseEngine()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a> &amp; gridfire::engine::AdaptiveEngineView::getBaseEngine </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the base engine. </p>
+<dl class="section return"><dt>Returns</dt><dd>A const reference to the base engine. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a7884ea8e5618e295e64150f3ecf2c6b5">gridfire::engine::EngineView&lt; DynamicEngine &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a722ea6e07d46f739c29ad681c7500f8c" name="a722ea6e07d46f739c29ad681c7500f8c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a722ea6e07d46f739c29ad681c7500f8c">&#9670;&#160;</a></span>getNetworkReactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp; gridfire::engine::AdaptiveEngineView::getNetworkReactions </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the set of active logical reactions in the network. </p>
+<dl class="section return"><dt>Returns</dt><dd>Reference to the LogicalReactionSet containing all active reactions. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a26b59a4c7622bf820c0eeec6a7522aa8">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="aaa2d47f44e5bb4d9660d7c017cc5085c" name="aaa2d47f44e5bb4d9660d7c017cc5085c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaa2d47f44e5bb4d9660d7c017cc5085c">&#9670;&#160;</a></span>getNetworkSpecies()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt; Species &gt; &amp; gridfire::engine::AdaptiveEngineView::getNetworkSpecies </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the list of active species in the network. </p>
+<dl class="section return"><dt>Returns</dt><dd>A const reference to the vector of active species. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1Engine.html#a3263c3fde2509d5d8ec4da3b6e946c48">gridfire::engine::Engine</a>.</p>
+
+</div>
+</div>
+<a id="acbd5b36262fa7d40f3274f4be6f0b8f6" name="acbd5b36262fa7d40f3274f4be6f0b8f6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acbd5b36262fa7d40f3274f4be6f0b8f6">&#9670;&#160;</a></span>getScreeningModel()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a> gridfire::engine::AdaptiveEngineView::getScreeningModel </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the screening model from the base engine. </p>
+<p>This method delegates the call to the base engine to get the screening model.</p>
+<dl class="section return"><dt>Returns</dt><dd>The current screening model type.</dd></dl>
+<dl class="section user"><dt>Usage Example:</dt><dd><div class="fragment"><div class="line"><a class="code hl_class" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">AdaptiveEngineView</a> engineView(...);</div>
+<div class="line"><a class="code hl_enumeration" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a> model = engineView.getScreeningModel();</div>
+<div class="ttc" id="aclassgridfire_1_1engine_1_1AdaptiveEngineView_html"><div class="ttname"><a href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">gridfire::engine::AdaptiveEngineView</a></div><div class="ttdoc">An engine view that dynamically adapts the reaction network based on runtime conditions.</div><div class="ttdef"><b>Definition</b> engine_adaptive.h:49</div></div>
+<div class="ttc" id="anamespacegridfire_1_1screening_html_aa82aafbc4f8c28d0a75b60798e3a7d25"><div class="ttname"><a href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">gridfire::screening::ScreeningType</a></div><div class="ttdeci">ScreeningType</div><div class="ttdoc">Enumerates the available plasma screening models.</div><div class="ttdef"><b>Definition</b> screening_types.h:15</div></div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a24103027a38e02d4342161164554d332">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a420666d17650736e20402514294f9a14" name="a420666d17650736e20402514294f9a14"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a420666d17650736e20402514294f9a14">&#9670;&#160;</a></span>getSpeciesDestructionTimescales()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; std::unordered_map&lt; Species, double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt; gridfire::engine::AdaptiveEngineView::getSpeciesDestructionTimescales </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Computes destruction timescales for all active species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Map from Species to their destruction timescales (s).</dd></dl>
+<p>This method maps the culled abundances to the full network abundances and calls the base engine to compute the species destruction timescales.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a> is stale (i.e., <code><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">update()</a></code> has not been called). </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aefc5d0f7842b27a108ba1e4ca346e9a0">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="ad7a82578006e5c55ca7716e7ab7e710c" name="ad7a82578006e5c55ca7716e7ab7e710c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad7a82578006e5c55ca7716e7ab7e710c">&#9670;&#160;</a></span>getSpeciesIndex()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::engine::AdaptiveEngineView::getSpeciesIndex </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the index of a species in the active species list. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species for which to get the index. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The index of the species in the active species list.</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a> is stale (i.e., <code><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">update()</a></code> has not been called). </td></tr>
+    <tr><td class="paramname">std::out_of_range</td><td>If the species is not part of the active species in the adaptive engine view. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ac0f40017603e8e6887b75dc7360d7c5e">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a5166197fd61060b2a9a445f707ee871b" name="a5166197fd61060b2a9a445f707ee871b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5166197fd61060b2a9a445f707ee871b">&#9670;&#160;</a></span>getSpeciesStatus()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1engine.html#a83c9d755597668bba3cf00cd0ea10ee3">SpeciesStatus</a> gridfire::engine::AdaptiveEngineView::getSpeciesStatus </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the status of a species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species for which to get the status. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The SpeciesStatus indicating the status of the species.</dd></dl>
+<p>This method delegates the call to the base engine to get the species status. If the base engine says that the species is active but it is not in the active species list of this view, the status is returned as INACTIVE_FLOW. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a8aebefad50c1aa34207e118e92d7ccf0">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="ade5dad29a79209e677b259a9b28c5133" name="ade5dad29a79209e677b259a9b28c5133"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ade5dad29a79209e677b259a9b28c5133">&#9670;&#160;</a></span>getSpeciesTimescales()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; std::unordered_map&lt; Species, double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt; gridfire::engine::AdaptiveEngineView::getSpeciesTimescales </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Computes timescales for all active species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Map from Species to their characteristic timescales (s).</dd></dl>
+<p>This method maps the culled abundances to the full network abundances and calls the base engine to compute the species timescales.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a> is stale (i.e., <code><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">update()</a></code> has not been called). </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aef6ed91d922c0b1733fd7835e99d0efe">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="aae6d8bab169721f0b89682ce8c4b4f10" name="aae6d8bab169721f0b89682ce8c4b4f10"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aae6d8bab169721f0b89682ce8c4b4f10">&#9670;&#160;</a></span>getStoichiometryMatrixEntry()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::engine::AdaptiveEngineView::getStoichiometryMatrixEntry </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets an entry from the stoichiometry matrix for the active species and reactions. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species for which to get the stoichiometric coefficient. </td></tr>
+    <tr><td class="paramname">reaction</td><td>The reaction for which to get the stoichiometric coefficient. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The stoichiometric coefficient for the given species and reaction.</dd></dl>
+<p>This method maps the culled indices to the full network indices and calls the base engine to get the stoichiometry matrix entry.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a> is stale (i.e., <code><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">update()</a></code> has not been called). </td></tr>
+    <tr><td class="paramname">std::out_of_range</td><td>If the culled index is out of bounds for the species or reaction index map. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">AdaptiveEngineView::update()</a> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a5ce6ff370e3f0964c6b2688fb3f4bb7e">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a6c08b4235996d12472d2a327eab8e984" name="a6c08b4235996d12472d2a327eab8e984"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6c08b4235996d12472d2a327eab8e984">&#9670;&#160;</a></span>isStale()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::AdaptiveEngineView::isStale </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Check if the engine's internal state is stale. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>A struct containing the current network input, such as temperature, density, and composition. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the engine's state is stale and needs to be updated; false otherwise.</dd></dl>
+<p>This method allows derived classes to determine if their internal state is out-of-date with respect to the provided network conditions. If the engine is stale, it may require a call to <code><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">update()</a></code> before performing calculations.</p>
+<dl class="section user"><dt>Usage Example:</dt><dd><div class="fragment"><div class="line"><a class="code hl_struct" href="structgridfire_1_1NetIn.html">NetIn</a> input = { ... };</div>
+<div class="line"><span class="keywordflow">if</span> (myEngine.isStale(input)) {</div>
+<div class="line">    <span class="comment">// Update the engine before proceeding</span></div>
+<div class="line">}</div>
+<div class="ttc" id="astructgridfire_1_1NetIn_html"><div class="ttname"><a href="structgridfire_1_1NetIn.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> types.h:27</div></div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a79423b9f67b4cac702547b4f1d8bd14c">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a24cc7e1a7471d707707b4d44ebd81068" name="a24cc7e1a7471d707707b4d44ebd81068"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a24cc7e1a7471d707707b4d44ebd81068">&#9670;&#160;</a></span>mapNetInToMolarAbundanceVector()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; double &gt; gridfire::engine::AdaptiveEngineView::mapNetInToMolarAbundanceVector </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Maps the molar abundance vector from the active species to the full network species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>The current network input, containing temperature, density, and composition. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of molar abundances for all species in the full network.</dd></dl>
+<p>This method constructs a molar abundance vector for the full network by mapping the abundances from the active species in <code>netIn</code> to their corresponding indices in the full network. Species not present in <code>netIn</code> are assigned an abundance of zero.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a> is stale (i.e., <code><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">update()</a></code> has not been called). </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aa9d55b81c1963113aad86aa60c19676f">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a955a337f89a375637ac48071be45c54c" name="a955a337f89a375637ac48071be45c54c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a955a337f89a375637ac48071be45c54c">&#9670;&#160;</a></span>primeEngine()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html">PrimingReport</a> gridfire::engine::AdaptiveEngineView::primeEngine </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Primes the engine with the given network input. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>The current network input, containing temperature, density, and composition. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html" title="Captures the result of a network priming operation.">PrimingReport</a> indicating the result of the priming operation.</dd></dl>
+<p>This method delegates the priming operation to the base engine. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a70e270bb50910c0055a75575c1ef1e95">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a85e70c0ff022c31702472aa39fc64816" name="a85e70c0ff022c31702472aa39fc64816"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a85e70c0ff022c31702472aa39fc64816">&#9670;&#160;</a></span>rescueEdgeSpeciesDestructionChannel()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a21367fa61169e6f5185bc91b40cc04be">AdaptiveEngineView::RescueSet</a> gridfire::engine::AdaptiveEngineView::rescueEdgeSpeciesDestructionChannel </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>activeSpecies</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>activeReactions</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a5dbfcafa606c3242dc4ced62c2494a2d" name="a5dbfcafa606c3242dc4ced62c2494a2d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5dbfcafa606c3242dc4ced62c2494a2d">&#9670;&#160;</a></span>setNetworkReactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::AdaptiveEngineView::setNetworkReactions </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Sets the reaction set for the base engine. </p>
+<p>This method delegates the call to the base engine to set the reaction set.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The ReactionSet to set in the base engine.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The reaction set of the base engine is updated. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ab321170954bffc53b1bedaf54f6976be">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="ab050409db954a3fa593633f9d2cd5d89" name="ab050409db954a3fa593633f9d2cd5d89"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab050409db954a3fa593633f9d2cd5d89">&#9670;&#160;</a></span>setScreeningModel()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::AdaptiveEngineView::setScreeningModel </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a>&#160;</td>
+          <td class="paramname"><em>model</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Sets the screening model for the base engine. </p>
+<p>This method delegates the call to the base engine to set the electron screening model.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">model</td><td>The electron screening model to set.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Usage Example:</dt><dd><div class="fragment"><div class="line"><a class="code hl_class" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html">AdaptiveEngineView</a> engineView(...);</div>
+<div class="line">engineView.setScreeningModel(<a class="code hl_enumvalue" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8">screening::ScreeningType::WEAK</a>);</div>
+<div class="ttc" id="anamespacegridfire_1_1screening_html_aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8"><div class="ttname"><a href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8">gridfire::screening::ScreeningType::WEAK</a></div><div class="ttdeci">@ WEAK</div><div class="ttdoc">Weak screening model (Salpeter, 1954).</div></div>
+</div><!-- fragment --></dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The screening model of the base engine is updated. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a50e76977d0dc3cc23d52b51842d35003">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a8db6ba52f454c136ee0a1335436fab6e" name="a8db6ba52f454c136ee0a1335436fab6e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8db6ba52f454c136ee0a1335436fab6e">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::composition::Composition gridfire::engine::AdaptiveEngineView::update </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Updates the active species and reactions based on the current conditions. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>The current network input, containing temperature, density, and composition.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method performs the reaction flow calculation, reaction culling, connectivity analysis, and index map construction steps described above.</p>
+<p>The culling thresholds are read from the configuration using the following keys:</p><ul>
+<li><code>gridfire:AdaptiveEngineView:RelativeCullingThreshold</code> (default: 1e-75)</li>
+</ul>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If there is a mismatch between the active reactions and the base engine. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The active species and reactions are updated, and the index maps are reconstructed. </dd></dl>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a> </dd>
+<dd>
+AdaptiveEngineView::constructSpeciesIndexMap() </dd>
+<dd>
+AdaptiveEngineView::constructReactionIndexMap() </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a8dd85442ec54f20d91743c72364e36ff">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a63837a6a4343a2ac6a61e21576b62655" name="a63837a6a4343a2ac6a61e21576b62655"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a63837a6a4343a2ac6a61e21576b62655">&#9670;&#160;</a></span>validateState()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::AdaptiveEngineView::validateState </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Validates that the <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a> is not stale. </p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a> is stale (i.e., <code><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e" title="Updates the active species and reactions based on the current conditions.">update()</a></code> has not been called). </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a90a8fa566ca9fe2b74427ea497353e1b" name="a90a8fa566ca9fe2b74427ea497353e1b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a90a8fa566ca9fe2b74427ea497353e1b">&#9670;&#160;</a></span>m_activeReactions</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> gridfire::engine::AdaptiveEngineView::m_activeReactions</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>The set of reactions that are currently active in the network. </p>
+
+</div>
+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#a8c7bf0f0e5ad83821e3959c47c81cd60">&#9670;&#160;</a></span>m_activeSpecies</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;fourdst::atomic::Species&gt; gridfire::engine::AdaptiveEngineView::m_activeSpecies</td>
+        </tr>
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+<p>The set of species that are currently active in the network. </p>
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+  <tr>
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+      <table class="memname">
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+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a>&amp; gridfire::engine::AdaptiveEngineView::m_baseEngine</td>
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+<p>The underlying engine to which this view delegates calculations. </p>
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+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a0a49d174e105adb3ffd9cf98ff58db3e">Config</a>&amp; gridfire::engine::AdaptiveEngineView::m_config = Config::getInstance()</td>
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+  <td class="mlabels-right">
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+<h2 class="memtitle"><span class="permalink"><a href="#a60c4792822f671f094a86378265a416a">&#9670;&#160;</a></span>m_logger</h2>
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+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::engine::AdaptiveEngineView::m_logger = LogManager::getInstance().getLogger(&quot;log&quot;)</td>
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+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
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+<p>A pointer to the logger instance, used for logging messages. </p>
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+<hr/>The documentation for this class was generated from the following files:<ul>
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+<li>src/lib/engine/views/<a class="el" href="engine__adaptive_8cpp.html">engine_adaptive.cpp</a></li>
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::engine::DefinedEngineView Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a2a866a7ba9572d36efab8efe72a063f5">calculateEpsDerivatives</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a2f0ad1febc467bce87b5c6ad29b059fb">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a82cbef591ef1aafcb9a42e01bf38fc38">calculateRHSAndEnergy</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a38191e2b3b219d348eba0109dce271c3">collect</a>(const std::vector&lt; std::string &gt; &amp;peNames)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a25dc44af1a58561b665103b16abe9bbc">collectComposition</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a8464c50142f34583201c4abc7fbcba36">constructReactionIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a20b54c8b13616982eddb3ae3979b842d">constructSpeciesIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ada2f326789dc8ae8305617c8d700ae05">DefinedEngineView</a>(const std::vector&lt; std::string &gt; &amp;peNames, GraphEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a4d90439d99da61107d95319b970760bc">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a4966f8cbc859ce2a8a465516d0c0abd0">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const std::vector&lt; fourdst::atomic::Species &gt; &amp;activeSpecies) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a1de5867a0e633de0d0d96ac4fbb141e5">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#af4049e5570bd143d41cab1d4005b6824">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ab6f82ef31b99bfe8a6c4e475bcdb96f8">getBaseEngine</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ac5a0def6b6af0bd93bf9057c25f048ff">getDepth</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a81732c1b2d08451849c1ddf833246892">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a0af3e1ac0314a485171f1dda39929cb4">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a413b111f6a643d7aecbae01dd0f82640">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ab051d976dbecf325747d54efe7834d04">getSpeciesDestructionTimescales</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#afb3c67ce20746b9acb2766920b8f397b">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a65af092785759559f4697c7e66bef2e3">getSpeciesStatus</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a1edda1a27247480660cf7a63410f5799">getSpeciesTimescales</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a600dd38a6011089527024f1625130935">getStoichiometryMatrixEntry</a>(const fourdst::atomic::Species &amp;species, const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a6ef3052fce2d5e4fdaec6659df64c2bc">isStale</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ae8ac4dc44a6c9f3588d6dd02b39a4cc9">m_activeReactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#aad986ed7c9602ba042999cf0a30ed70c">m_activeSpecies</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#add093054fe3ba60f99b04f7f3bda4ba3">m_activeSpeciesVectorCache</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a1e46935f049537e675fb132564d6eacd">m_baseEngine</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a3156dfef68cd3636f8cf7a13b5388e75">m_isStale</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a3ba348cf85f0098071d23b0a3cea7078">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#aa9a26262300b0982b847a72425dc373a">m_reactionIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a26af4be40216ee3ea5b7fff49fe7a00c">m_speciesIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a391bc4b5d946ea606cf7661955191d12">mapFullToView</a>(const std::vector&lt; double &gt; &amp;full) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#aa053696a7885b8e42562b2d22ee32d84">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#aa352f3ba0e689d3f81711c17f4f67dfc">mapViewToFull</a>(const std::vector&lt; double &gt; &amp;defined) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#afa9aeb6d11645e4b9cecf56fb63b51ef">mapViewToFullReactionIndex</a>(size_t definedReactionIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ad6986fa5cda1d9ed9d4f54f444f402e8">mapViewToFullSpeciesIndex</a>(size_t definedSpeciesIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a2bc32a84c9f5372587fca92f2da77595">primeEngine</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a2444b9ed3bc61920ce23c546444269e4">rebuild</a>(const fourdst::composition::CompositionAbstract &amp;comp, BuildDepthType depth)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ae89529e13f2b7fd2febcfa5af40d4666">setNetworkReactions</a>(const reaction::ReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a68bd0e51d3e127e5f9fd74fdb8180fd9">setScreeningModel</a>(screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a1d99b55bf8e94bc2397715aa1f916733">update</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a91ea88e43c17f99ff0d95a8f54b09cbf">validateNetworkState</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html#af0ea99416c28933d364a872fc6aff556">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html">gridfire::engine::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a17d63e853d6efca31064e9147c80d497">~EngineView</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html">gridfire::engine::EngineView&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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diff --git a/docs/html/classgridfire_1_1engine_1_1DefinedEngineView.html b/docs/html/classgridfire_1_1engine_1_1DefinedEngineView.html
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+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
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+<!-- end header part -->
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+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pro-attribs">Protected Attributes</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1engine_1_1DefinedEngineView-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::engine::DefinedEngineView Class Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;engine_defined.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::engine::DefinedEngineView:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1engine_1_1DefinedEngineView__inherit__graph.svg" width="100%" height="386"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::engine::DefinedEngineView:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1engine_1_1DefinedEngineView__coll__graph.svg" width="100%" height="600"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:ada2f326789dc8ae8305617c8d700ae05" id="r_ada2f326789dc8ae8305617c8d700ae05"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ada2f326789dc8ae8305617c8d700ae05">DefinedEngineView</a> (const std::vector&lt; std::string &gt; &amp;peNames, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a> &amp;baseEngine)</td></tr>
+<tr class="separator:ada2f326789dc8ae8305617c8d700ae05"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab6f82ef31b99bfe8a6c4e475bcdb96f8" id="r_ab6f82ef31b99bfe8a6c4e475bcdb96f8"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ab6f82ef31b99bfe8a6c4e475bcdb96f8">getBaseEngine</a> () const override</td></tr>
+<tr class="memdesc:ab6f82ef31b99bfe8a6c4e475bcdb96f8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the base engine associated with this defined engine view.  <br /></td></tr>
+<tr class="separator:ab6f82ef31b99bfe8a6c4e475bcdb96f8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0af3e1ac0314a485171f1dda39929cb4" id="r_a0af3e1ac0314a485171f1dda39929cb4"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a0af3e1ac0314a485171f1dda39929cb4">getNetworkSpecies</a> () const override</td></tr>
+<tr class="memdesc:a0af3e1ac0314a485171f1dda39929cb4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the list of active species in the network defined by the file.  <br /></td></tr>
+<tr class="separator:a0af3e1ac0314a485171f1dda39929cb4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a82cbef591ef1aafcb9a42e01bf38fc38" id="r_a82cbef591ef1aafcb9a42e01bf38fc38"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">engine::EngineStatus</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a82cbef591ef1aafcb9a42e01bf38fc38">calculateRHSAndEnergy</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a82cbef591ef1aafcb9a42e01bf38fc38"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the right-hand side (dY/dt) and energy generation for the active species.  <br /></td></tr>
+<tr class="separator:a82cbef591ef1aafcb9a42e01bf38fc38"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2a866a7ba9572d36efab8efe72a063f5" id="r_a2a866a7ba9572d36efab8efe72a063f5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html">EnergyDerivatives</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a2a866a7ba9572d36efab8efe72a063f5">calculateEpsDerivatives</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a2a866a7ba9572d36efab8efe72a063f5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the derivatives of the energy generation rate with respect to T and rho.  <br /></td></tr>
+<tr class="separator:a2a866a7ba9572d36efab8efe72a063f5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4d90439d99da61107d95319b970760bc" id="r_a4d90439d99da61107d95319b970760bc"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a4d90439d99da61107d95319b970760bc">generateJacobianMatrix</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td></tr>
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+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:a20b54c8b13616982eddb3ae3979b842d" id="r_a20b54c8b13616982eddb3ae3979b842d"><td class="memItemLeft" align="right" valign="top">std::vector&lt; size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a20b54c8b13616982eddb3ae3979b842d">constructSpeciesIndexMap</a> () const</td></tr>
+<tr class="memdesc:a20b54c8b13616982eddb3ae3979b842d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs the species index map.  <br /></td></tr>
+<tr class="separator:a20b54c8b13616982eddb3ae3979b842d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8464c50142f34583201c4abc7fbcba36" id="r_a8464c50142f34583201c4abc7fbcba36"><td class="memItemLeft" align="right" valign="top">std::vector&lt; size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a8464c50142f34583201c4abc7fbcba36">constructReactionIndexMap</a> () const</td></tr>
+<tr class="memdesc:a8464c50142f34583201c4abc7fbcba36"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs the reaction index map.  <br /></td></tr>
+<tr class="separator:a8464c50142f34583201c4abc7fbcba36"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa352f3ba0e689d3f81711c17f4f67dfc" id="r_aa352f3ba0e689d3f81711c17f4f67dfc"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#aa352f3ba0e689d3f81711c17f4f67dfc">mapViewToFull</a> (const std::vector&lt; double &gt; &amp;defined) const</td></tr>
+<tr class="memdesc:aa352f3ba0e689d3f81711c17f4f67dfc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps a vector of culled abundances to a vector of full abundances.  <br /></td></tr>
+<tr class="separator:aa352f3ba0e689d3f81711c17f4f67dfc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a391bc4b5d946ea606cf7661955191d12" id="r_a391bc4b5d946ea606cf7661955191d12"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a391bc4b5d946ea606cf7661955191d12">mapFullToView</a> (const std::vector&lt; double &gt; &amp;full) const</td></tr>
+<tr class="memdesc:a391bc4b5d946ea606cf7661955191d12"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps a vector of full abundances to a vector of culled abundances.  <br /></td></tr>
+<tr class="separator:a391bc4b5d946ea606cf7661955191d12"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad6986fa5cda1d9ed9d4f54f444f402e8" id="r_ad6986fa5cda1d9ed9d4f54f444f402e8"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ad6986fa5cda1d9ed9d4f54f444f402e8">mapViewToFullSpeciesIndex</a> (size_t definedSpeciesIndex) const</td></tr>
+<tr class="memdesc:ad6986fa5cda1d9ed9d4f54f444f402e8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps a culled species index to a full species index.  <br /></td></tr>
+<tr class="separator:ad6986fa5cda1d9ed9d4f54f444f402e8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afa9aeb6d11645e4b9cecf56fb63b51ef" id="r_afa9aeb6d11645e4b9cecf56fb63b51ef"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#afa9aeb6d11645e4b9cecf56fb63b51ef">mapViewToFullReactionIndex</a> (size_t definedReactionIndex) const</td></tr>
+<tr class="memdesc:afa9aeb6d11645e4b9cecf56fb63b51ef"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps a culled reaction index to a full reaction index.  <br /></td></tr>
+<tr class="separator:afa9aeb6d11645e4b9cecf56fb63b51ef"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a91ea88e43c17f99ff0d95a8f54b09cbf" id="r_a91ea88e43c17f99ff0d95a8f54b09cbf"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a91ea88e43c17f99ff0d95a8f54b09cbf">validateNetworkState</a> () const</td></tr>
+<tr class="separator:a91ea88e43c17f99ff0d95a8f54b09cbf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a38191e2b3b219d348eba0109dce271c3" id="r_a38191e2b3b219d348eba0109dce271c3"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a38191e2b3b219d348eba0109dce271c3">collect</a> (const std::vector&lt; std::string &gt; &amp;peNames)</td></tr>
+<tr class="separator:a38191e2b3b219d348eba0109dce271c3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a3ba348cf85f0098071d23b0a3cea7078" id="r_a3ba348cf85f0098071d23b0a3cea7078"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a3ba348cf85f0098071d23b0a3cea7078">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="memdesc:a3ba348cf85f0098071d23b0a3cea7078"><td class="mdescLeft">&#160;</td><td class="mdescRight">Active species in the defined engine.  <br /></td></tr>
+<tr class="separator:a3ba348cf85f0098071d23b0a3cea7078"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aad986ed7c9602ba042999cf0a30ed70c" id="r_aad986ed7c9602ba042999cf0a30ed70c"><td class="memItemLeft" align="right" valign="top">std::set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#aad986ed7c9602ba042999cf0a30ed70c">m_activeSpecies</a></td></tr>
+<tr class="memdesc:aad986ed7c9602ba042999cf0a30ed70c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cache for the active species vector to avoid dangling references.  <br /></td></tr>
+<tr class="separator:aad986ed7c9602ba042999cf0a30ed70c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:add093054fe3ba60f99b04f7f3bda4ba3" id="r_add093054fe3ba60f99b04f7f3bda4ba3"><td class="memItemLeft" align="right" valign="top">std::optional&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#add093054fe3ba60f99b04f7f3bda4ba3">m_activeSpeciesVectorCache</a> = std::nullopt</td></tr>
+<tr class="memdesc:add093054fe3ba60f99b04f7f3bda4ba3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Active reactions in the defined engine.  <br /></td></tr>
+<tr class="separator:add093054fe3ba60f99b04f7f3bda4ba3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae8ac4dc44a6c9f3588d6dd02b39a4cc9" id="r_ae8ac4dc44a6c9f3588d6dd02b39a4cc9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ae8ac4dc44a6c9f3588d6dd02b39a4cc9">m_activeReactions</a></td></tr>
+<tr class="memdesc:ae8ac4dc44a6c9f3588d6dd02b39a4cc9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps indices of active species to indices in the full network.  <br /></td></tr>
+<tr class="separator:ae8ac4dc44a6c9f3588d6dd02b39a4cc9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a26af4be40216ee3ea5b7fff49fe7a00c" id="r_a26af4be40216ee3ea5b7fff49fe7a00c"><td class="memItemLeft" align="right" valign="top">std::vector&lt; size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a26af4be40216ee3ea5b7fff49fe7a00c">m_speciesIndexMap</a></td></tr>
+<tr class="memdesc:a26af4be40216ee3ea5b7fff49fe7a00c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps indices of active reactions to indices in the full network.  <br /></td></tr>
+<tr class="separator:a26af4be40216ee3ea5b7fff49fe7a00c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa9a26262300b0982b847a72425dc373a" id="r_aa9a26262300b0982b847a72425dc373a"><td class="memItemLeft" align="right" valign="top">std::vector&lt; size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#aa9a26262300b0982b847a72425dc373a">m_reactionIndexMap</a></td></tr>
+<tr class="separator:aa9a26262300b0982b847a72425dc373a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="ada2f326789dc8ae8305617c8d700ae05" name="ada2f326789dc8ae8305617c8d700ae05"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ada2f326789dc8ae8305617c8d700ae05">&#9670;&#160;</a></span>DefinedEngineView()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::engine::DefinedEngineView::DefinedEngineView </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; std::string &gt; &amp;&#160;</td>
+          <td class="paramname"><em>peNames</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a> &amp;&#160;</td>
+          <td class="paramname"><em>baseEngine</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a2a866a7ba9572d36efab8efe72a063f5" name="a2a866a7ba9572d36efab8efe72a063f5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2a866a7ba9572d36efab8efe72a063f5">&#9670;&#160;</a></span>calculateEpsDerivatives()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html">EnergyDerivatives</a> gridfire::engine::DefinedEngineView::calculateEpsDerivatives </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculate the derivatives of the energy generation rate with respect to T and rho. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html" title="Structure holding derivatives of energy generation rate with respect to T and rho.">EnergyDerivatives</a> containing dEps/dT and dEps/dRho.</dd></dl>
+<p>This method computes the partial derivatives of the specific nuclear energy generation rate with respect to temperature and density for the current state. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ada6a1295a92c2aede841672ecae0cede">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a2f0ad1febc467bce87b5c6ad29b059fb" name="a2f0ad1febc467bce87b5c6ad29b059fb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2f0ad1febc467bce87b5c6ad29b059fb">&#9670;&#160;</a></span>calculateMolarReactionFlow()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::engine::DefinedEngineView::calculateMolarReactionFlow </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the molar reaction flow for a given reaction in the active network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The reaction for which to calculate the flow. </td></tr>
+    <tr><td class="paramname">comp</td><td>A Composition object containing the current composition of the system </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Molar flow rate for the reaction (e.g., mol/g/s).</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the view is stale or if the reaction is not in the active set. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aa57fa5e58b98a03fba31bcddda8001d4">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a82cbef591ef1aafcb9a42e01bf38fc38" name="a82cbef591ef1aafcb9a42e01bf38fc38"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a82cbef591ef1aafcb9a42e01bf38fc38">&#9670;&#160;</a></span>calculateRHSAndEnergy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; <a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt; gridfire::engine::DefinedEngineView::calculateRHSAndEnergy </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the right-hand side (dY/dt) and energy generation for the active species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>A Composition object containing the current composition of the system </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html" title="Structure holding derivatives and energy generation for a network step.">StepDerivatives</a> struct containing the derivatives of the active species and the nuclear energy generation rate.</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the view is stale (i.e., <code><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a1d99b55bf8e94bc2397715aa1f916733" title="Updates the engine view if it is marked as stale.">update()</a></code> has not been called after <code>setNetworkFile()</code>). </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1Engine.html#a764fc091c72c12c8529105d7c96badb2">gridfire::engine::Engine</a>.</p>
+
+</div>
+</div>
+<a id="a38191e2b3b219d348eba0109dce271c3" name="a38191e2b3b219d348eba0109dce271c3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a38191e2b3b219d348eba0109dce271c3">&#9670;&#160;</a></span>collect()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::DefinedEngineView::collect </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; std::string &gt; &amp;&#160;</td>
+          <td class="paramname"><em>peNames</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a25dc44af1a58561b665103b16abe9bbc" name="a25dc44af1a58561b665103b16abe9bbc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a25dc44af1a58561b665103b16abe9bbc">&#9670;&#160;</a></span>collectComposition()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::composition::Composition gridfire::engine::DefinedEngineView::collectComposition </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Collects a Composition object from the base engine. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The full Composition object. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A composition object representing the state of the engine stack and the current view. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a41877719ae5e8de53c1692c7cf9bfbfc">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a8464c50142f34583201c4abc7fbcba36" name="a8464c50142f34583201c4abc7fbcba36"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8464c50142f34583201c4abc7fbcba36">&#9670;&#160;</a></span>constructReactionIndexMap()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; size_t &gt; gridfire::engine::DefinedEngineView::constructReactionIndexMap </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructs the reaction index map. </p>
+<dl class="section return"><dt>Returns</dt><dd>A vector mapping defined reaction indices to full reaction indices.</dd></dl>
+<p>This method creates a map from the indices of the active reactions to the indices of the corresponding reactions in the full network.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If an active reaction is not found in the base engine's reaction list. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a20b54c8b13616982eddb3ae3979b842d" name="a20b54c8b13616982eddb3ae3979b842d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a20b54c8b13616982eddb3ae3979b842d">&#9670;&#160;</a></span>constructSpeciesIndexMap()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; size_t &gt; gridfire::engine::DefinedEngineView::constructSpeciesIndexMap </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructs the species index map. </p>
+<dl class="section return"><dt>Returns</dt><dd>A vector mapping defined species indices to full species indices.</dd></dl>
+<p>This method creates a map from the indices of the active species to the indices of the corresponding species in the full network.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If an active species is not found in the base engine's species list. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a4d90439d99da61107d95319b970760bc" name="a4d90439d99da61107d95319b970760bc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4d90439d99da61107d95319b970760bc">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[1/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> gridfire::engine::DefinedEngineView::generateJacobianMatrix </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generates the Jacobian matrix for the active species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>A Composition object containing the current composition of the system </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The density in g/cm^3.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the view is stale. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a53276f09346b531f8676db355e1219eb">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a1de5867a0e633de0d0d96ac4fbb141e5" name="a1de5867a0e633de0d0d96ac4fbb141e5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1de5867a0e633de0d0d96ac4fbb141e5">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[2/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> gridfire::engine::DefinedEngineView::generateJacobianMatrix </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1engine.html#af5175018d2d1e78a8826dd33ec6d675f">SparsityPattern</a> &amp;&#160;</td>
+          <td class="paramname"><em>sparsityPattern</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generates the Jacobian matrix for a given sparsity pattern. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>A Composition object containing the current composition of the system </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The density in g/cm^3. </td></tr>
+    <tr><td class="paramname">sparsityPattern</td><td>The sparsity pattern to use for the Jacobian matrix.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the view is stale. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a51d55a21be28e372021b2b8e5ecdc551">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a4966f8cbc859ce2a8a465516d0c0abd0" name="a4966f8cbc859ce2a8a465516d0c0abd0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4966f8cbc859ce2a8a465516d0c0abd0">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[3/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> gridfire::engine::DefinedEngineView::generateJacobianMatrix </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>activeSpecies</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generates the Jacobian matrix for the active species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>A Composition object containing the current composition of the system </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The density in g/cm^3. </td></tr>
+    <tr><td class="paramname">activeSpecies</td><td>The vector of active species to include in the Jacobian.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the view is stale. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a15d53dac8b622a3b7d0f928a3995dbde">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="af4049e5570bd143d41cab1d4005b6824" name="af4049e5570bd143d41cab1d4005b6824"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af4049e5570bd143d41cab1d4005b6824">&#9670;&#160;</a></span>generateStoichiometryMatrix()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::DefinedEngineView::generateStoichiometryMatrix </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generates the stoichiometry matrix for the active reactions and species. </p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the view is stale. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a5e2c45a3e415b53e41def8f743f93464">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="ab6f82ef31b99bfe8a6c4e475bcdb96f8" name="ab6f82ef31b99bfe8a6c4e475bcdb96f8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab6f82ef31b99bfe8a6c4e475bcdb96f8">&#9670;&#160;</a></span>getBaseEngine()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a> &amp; gridfire::engine::DefinedEngineView::getBaseEngine </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get the base engine associated with this defined engine view. </p>
+<dl class="section return"><dt>Returns</dt><dd>A const reference to the base <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a>. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a7884ea8e5618e295e64150f3ecf2c6b5">gridfire::engine::EngineView&lt; DynamicEngine &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a81732c1b2d08451849c1ddf833246892" name="a81732c1b2d08451849c1ddf833246892"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a81732c1b2d08451849c1ddf833246892">&#9670;&#160;</a></span>getNetworkReactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp; gridfire::engine::DefinedEngineView::getNetworkReactions </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the set of active logical reactions in the network. </p>
+<dl class="section return"><dt>Returns</dt><dd>Reference to the LogicalReactionSet containing all active reactions.</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the view is stale. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a26b59a4c7622bf820c0eeec6a7522aa8">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a0af3e1ac0314a485171f1dda39929cb4" name="a0af3e1ac0314a485171f1dda39929cb4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0af3e1ac0314a485171f1dda39929cb4">&#9670;&#160;</a></span>getNetworkSpecies()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt; Species &gt; &amp; gridfire::engine::DefinedEngineView::getNetworkSpecies </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the list of active species in the network defined by the file. </p>
+<dl class="section return"><dt>Returns</dt><dd>A const reference to the vector of active species. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1Engine.html#a3263c3fde2509d5d8ec4da3b6e946c48">gridfire::engine::Engine</a>.</p>
+
+</div>
+</div>
+<a id="a413b111f6a643d7aecbae01dd0f82640" name="a413b111f6a643d7aecbae01dd0f82640"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a413b111f6a643d7aecbae01dd0f82640">&#9670;&#160;</a></span>getScreeningModel()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a> gridfire::engine::DefinedEngineView::getScreeningModel </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the screening model from the base engine. </p>
+<dl class="section return"><dt>Returns</dt><dd>The current screening model type. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a24103027a38e02d4342161164554d332">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="ab051d976dbecf325747d54efe7834d04" name="ab051d976dbecf325747d54efe7834d04"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab051d976dbecf325747d54efe7834d04">&#9670;&#160;</a></span>getSpeciesDestructionTimescales()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; std::unordered_map&lt; Species, double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt; gridfire::engine::DefinedEngineView::getSpeciesDestructionTimescales </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Computes destruction timescales for all active species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>A Composition object containing the current composition of the system </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Map from Species to their destruction timescales (s).</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the view is stale. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aefc5d0f7842b27a108ba1e4ca346e9a0">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="afb3c67ce20746b9acb2766920b8f397b" name="afb3c67ce20746b9acb2766920b8f397b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afb3c67ce20746b9acb2766920b8f397b">&#9670;&#160;</a></span>getSpeciesIndex()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::engine::DefinedEngineView::getSpeciesIndex </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Maps a species from the full network to its index in the defined active network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to map. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The index of the species in the active network.</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the species is not in the active set. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ac0f40017603e8e6887b75dc7360d7c5e">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a65af092785759559f4697c7e66bef2e3" name="a65af092785759559f4697c7e66bef2e3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a65af092785759559f4697c7e66bef2e3">&#9670;&#160;</a></span>getSpeciesStatus()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1engine.html#a83c9d755597668bba3cf00cd0ea10ee3">SpeciesStatus</a> gridfire::engine::DefinedEngineView::getSpeciesStatus </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the status of a species in the active network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species for which to get the status. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The SpeciesStatus indicating if the species is active, inactive, or not present. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a8aebefad50c1aa34207e118e92d7ccf0">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a1edda1a27247480660cf7a63410f5799" name="a1edda1a27247480660cf7a63410f5799"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1edda1a27247480660cf7a63410f5799">&#9670;&#160;</a></span>getSpeciesTimescales()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; std::unordered_map&lt; Species, double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt; gridfire::engine::DefinedEngineView::getSpeciesTimescales </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Computes timescales for all active species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>A Composition object containing the current composition of the system </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Map from Species to their characteristic timescales (s).</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the view is stale. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aef6ed91d922c0b1733fd7835e99d0efe">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a600dd38a6011089527024f1625130935" name="a600dd38a6011089527024f1625130935"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a600dd38a6011089527024f1625130935">&#9670;&#160;</a></span>getStoichiometryMatrixEntry()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::engine::DefinedEngineView::getStoichiometryMatrixEntry </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets an entry from the stoichiometry matrix for the active species and reactions. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species for which to get the stoichiometric coefficient. </td></tr>
+    <tr><td class="paramname">reaction</td><td>The reaction for which to get the stoichiometric coefficient. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The stoichiometric coefficient for the given species and reaction.</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the view is stale. </td></tr>
+    <tr><td class="paramname">std::out_of_range</td><td>If an index is out of bounds. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a5ce6ff370e3f0964c6b2688fb3f4bb7e">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a6ef3052fce2d5e4fdaec6659df64c2bc" name="a6ef3052fce2d5e4fdaec6659df64c2bc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6ef3052fce2d5e4fdaec6659df64c2bc">&#9670;&#160;</a></span>isStale()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::DefinedEngineView::isStale </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Checks if the engine view is stale. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>The current network input (unused). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the view is stale and needs to be updated; false otherwise. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a79423b9f67b4cac702547b4f1d8bd14c">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a391bc4b5d946ea606cf7661955191d12" name="a391bc4b5d946ea606cf7661955191d12"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a391bc4b5d946ea606cf7661955191d12">&#9670;&#160;</a></span>mapFullToView()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; double &gt; gridfire::engine::DefinedEngineView::mapFullToView </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>full</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Maps a vector of full abundances to a vector of culled abundances. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">full</td><td>A vector of abundances for the full network. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of abundances for the active species, with the abundances of the active species copied from the full vector. </dd></dl>
+
+</div>
+</div>
+<a id="aa053696a7885b8e42562b2d22ee32d84" name="aa053696a7885b8e42562b2d22ee32d84"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa053696a7885b8e42562b2d22ee32d84">&#9670;&#160;</a></span>mapNetInToMolarAbundanceVector()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; double &gt; gridfire::engine::DefinedEngineView::mapNetInToMolarAbundanceVector </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Map from a <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> object to a vector of molar abundances for the active species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>The <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> object containing the full network abundances. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of molar abundances for the active species. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aa9d55b81c1963113aad86aa60c19676f">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="aa352f3ba0e689d3f81711c17f4f67dfc" name="aa352f3ba0e689d3f81711c17f4f67dfc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa352f3ba0e689d3f81711c17f4f67dfc">&#9670;&#160;</a></span>mapViewToFull()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; double &gt; gridfire::engine::DefinedEngineView::mapViewToFull </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>defined</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Maps a vector of culled abundances to a vector of full abundances. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">defined</td><td>A vector of abundances for the active species. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of abundances for the full network, with the abundances of the active species copied from the defined vector. </dd></dl>
+
+</div>
+</div>
+<a id="afa9aeb6d11645e4b9cecf56fb63b51ef" name="afa9aeb6d11645e4b9cecf56fb63b51ef"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afa9aeb6d11645e4b9cecf56fb63b51ef">&#9670;&#160;</a></span>mapViewToFullReactionIndex()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::engine::DefinedEngineView::mapViewToFullReactionIndex </td>
+          <td>(</td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>definedReactionIndex</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Maps a culled reaction index to a full reaction index. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">definedReactionIndex</td><td>The index of the reaction in the defined reaction list. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The index of the corresponding reaction in the full network.</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::out_of_range</td><td>If the defined index is out of bounds for the reaction index map. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="ad6986fa5cda1d9ed9d4f54f444f402e8" name="ad6986fa5cda1d9ed9d4f54f444f402e8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad6986fa5cda1d9ed9d4f54f444f402e8">&#9670;&#160;</a></span>mapViewToFullSpeciesIndex()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::engine::DefinedEngineView::mapViewToFullSpeciesIndex </td>
+          <td>(</td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>definedSpeciesIndex</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Maps a culled species index to a full species index. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">definedSpeciesIndex</td><td>The index of the species in the defined species list. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The index of the corresponding species in the full network.</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::out_of_range</td><td>If the defined index is out of bounds for the species index map. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a2bc32a84c9f5372587fca92f2da77595" name="a2bc32a84c9f5372587fca92f2da77595"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2bc32a84c9f5372587fca92f2da77595">&#9670;&#160;</a></span>primeEngine()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html">PrimingReport</a> gridfire::engine::DefinedEngineView::primeEngine </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Prime the engine view for calculations. This will delegate to the base engine. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>The current network input. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The <a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html" title="Captures the result of a network priming operation.">PrimingReport</a> from the base engine. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a70e270bb50910c0055a75575c1ef1e95">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="ae89529e13f2b7fd2febcfa5af40d4666" name="ae89529e13f2b7fd2febcfa5af40d4666"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae89529e13f2b7fd2febcfa5af40d4666">&#9670;&#160;</a></span>setNetworkReactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::DefinedEngineView::setNetworkReactions </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Sets the active reactions in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The ReactionSet containing the reactions to set as active.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The view is marked as stale and will need to be updated. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ab321170954bffc53b1bedaf54f6976be">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a68bd0e51d3e127e5f9fd74fdb8180fd9" name="a68bd0e51d3e127e5f9fd74fdb8180fd9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a68bd0e51d3e127e5f9fd74fdb8180fd9">&#9670;&#160;</a></span>setScreeningModel()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::DefinedEngineView::setScreeningModel </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a>&#160;</td>
+          <td class="paramname"><em>model</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Sets the screening model for the base engine. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">model</td><td>The screening model to set. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a50e76977d0dc3cc23d52b51842d35003">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a1d99b55bf8e94bc2397715aa1f916733" name="a1d99b55bf8e94bc2397715aa1f916733"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1d99b55bf8e94bc2397715aa1f916733">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::composition::Composition gridfire::engine::DefinedEngineView::update </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Updates the engine view if it is marked as stale. </p>
+<p>This method checks if the view is stale (e.g., after <code>setNetworkFile</code> was called). If it is, it rebuilds the active network from the currently set file. The <code>netIn</code> parameter is not used by this implementation but is required by the interface.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>The current network input (unused).</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section post"><dt>Postcondition</dt><dd>If the view was stale, it is rebuilt and is no longer stale. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a8dd85442ec54f20d91743c72364e36ff">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a91ea88e43c17f99ff0d95a8f54b09cbf" name="a91ea88e43c17f99ff0d95a8f54b09cbf"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a91ea88e43c17f99ff0d95a8f54b09cbf">&#9670;&#160;</a></span>validateNetworkState()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::DefinedEngineView::validateNetworkState </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="ae8ac4dc44a6c9f3588d6dd02b39a4cc9" name="ae8ac4dc44a6c9f3588d6dd02b39a4cc9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae8ac4dc44a6c9f3588d6dd02b39a4cc9">&#9670;&#160;</a></span>m_activeReactions</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> gridfire::engine::DefinedEngineView::m_activeReactions</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Maps indices of active species to indices in the full network. </p>
+
+</div>
+</div>
+<a id="aad986ed7c9602ba042999cf0a30ed70c" name="aad986ed7c9602ba042999cf0a30ed70c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aad986ed7c9602ba042999cf0a30ed70c">&#9670;&#160;</a></span>m_activeSpecies</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::set&lt;fourdst::atomic::Species&gt; gridfire::engine::DefinedEngineView::m_activeSpecies</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Cache for the active species vector to avoid dangling references. </p>
+
+</div>
+</div>
+<a id="add093054fe3ba60f99b04f7f3bda4ba3" name="add093054fe3ba60f99b04f7f3bda4ba3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#add093054fe3ba60f99b04f7f3bda4ba3">&#9670;&#160;</a></span>m_activeSpeciesVectorCache</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::optional&lt;std::vector&lt;fourdst::atomic::Species&gt; &gt; gridfire::engine::DefinedEngineView::m_activeSpeciesVectorCache = std::nullopt</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Active reactions in the defined engine. </p>
+
+</div>
+</div>
+<a id="a1e46935f049537e675fb132564d6eacd" name="a1e46935f049537e675fb132564d6eacd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1e46935f049537e675fb132564d6eacd">&#9670;&#160;</a></span>m_baseEngine</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a>&amp; gridfire::engine::DefinedEngineView::m_baseEngine</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a3156dfef68cd3636f8cf7a13b5388e75" name="a3156dfef68cd3636f8cf7a13b5388e75"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3156dfef68cd3636f8cf7a13b5388e75">&#9670;&#160;</a></span>m_isStale</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::DefinedEngineView::m_isStale = true</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a3ba348cf85f0098071d23b0a3cea7078" name="a3ba348cf85f0098071d23b0a3cea7078"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3ba348cf85f0098071d23b0a3cea7078">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::engine::DefinedEngineView::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Active species in the defined engine. </p>
+<p>Logger instance for trace and debug information. </p>
+
+</div>
+</div>
+<a id="aa9a26262300b0982b847a72425dc373a" name="aa9a26262300b0982b847a72425dc373a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa9a26262300b0982b847a72425dc373a">&#9670;&#160;</a></span>m_reactionIndexMap</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;size_t&gt; gridfire::engine::DefinedEngineView::m_reactionIndexMap</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a26af4be40216ee3ea5b7fff49fe7a00c" name="a26af4be40216ee3ea5b7fff49fe7a00c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a26af4be40216ee3ea5b7fff49fe7a00c">&#9670;&#160;</a></span>m_speciesIndexMap</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;size_t&gt; gridfire::engine::DefinedEngineView::m_speciesIndexMap</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Maps indices of active reactions to indices in the full network. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/engine/views/<a class="el" href="engine__defined_8h.html">engine_defined.h</a></li>
+<li>src/lib/engine/views/<a class="el" href="engine__defined_8cpp.html">engine_defined.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1engine.html">engine</a></li><li class="navelem"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">DefinedEngineView</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1engine_1_1DefinedEngineView.js b/docs/html/classgridfire_1_1engine_1_1DefinedEngineView.js
new file mode 100644
index 00000000..ed3bec41
--- /dev/null
+++ b/docs/html/classgridfire_1_1engine_1_1DefinedEngineView.js
@@ -0,0 +1,43 @@
+var classgridfire_1_1engine_1_1DefinedEngineView =
+[
+    [ "DefinedEngineView", "classgridfire_1_1engine_1_1DefinedEngineView.html#ada2f326789dc8ae8305617c8d700ae05", null ],
+    [ "calculateEpsDerivatives", "classgridfire_1_1engine_1_1DefinedEngineView.html#a2a866a7ba9572d36efab8efe72a063f5", null ],
+    [ "calculateMolarReactionFlow", "classgridfire_1_1engine_1_1DefinedEngineView.html#a2f0ad1febc467bce87b5c6ad29b059fb", null ],
+    [ "calculateRHSAndEnergy", "classgridfire_1_1engine_1_1DefinedEngineView.html#a82cbef591ef1aafcb9a42e01bf38fc38", null ],
+    [ "collect", "classgridfire_1_1engine_1_1DefinedEngineView.html#a38191e2b3b219d348eba0109dce271c3", null ],
+    [ "collectComposition", "classgridfire_1_1engine_1_1DefinedEngineView.html#a25dc44af1a58561b665103b16abe9bbc", null ],
+    [ "constructReactionIndexMap", "classgridfire_1_1engine_1_1DefinedEngineView.html#a8464c50142f34583201c4abc7fbcba36", null ],
+    [ "constructSpeciesIndexMap", "classgridfire_1_1engine_1_1DefinedEngineView.html#a20b54c8b13616982eddb3ae3979b842d", null ],
+    [ "generateJacobianMatrix", "classgridfire_1_1engine_1_1DefinedEngineView.html#a4d90439d99da61107d95319b970760bc", null ],
+    [ "generateJacobianMatrix", "classgridfire_1_1engine_1_1DefinedEngineView.html#a1de5867a0e633de0d0d96ac4fbb141e5", null ],
+    [ "generateJacobianMatrix", "classgridfire_1_1engine_1_1DefinedEngineView.html#a4966f8cbc859ce2a8a465516d0c0abd0", null ],
+    [ "generateStoichiometryMatrix", "classgridfire_1_1engine_1_1DefinedEngineView.html#af4049e5570bd143d41cab1d4005b6824", null ],
+    [ "getBaseEngine", "classgridfire_1_1engine_1_1DefinedEngineView.html#ab6f82ef31b99bfe8a6c4e475bcdb96f8", null ],
+    [ "getNetworkReactions", "classgridfire_1_1engine_1_1DefinedEngineView.html#a81732c1b2d08451849c1ddf833246892", null ],
+    [ "getNetworkSpecies", "classgridfire_1_1engine_1_1DefinedEngineView.html#a0af3e1ac0314a485171f1dda39929cb4", null ],
+    [ "getScreeningModel", "classgridfire_1_1engine_1_1DefinedEngineView.html#a413b111f6a643d7aecbae01dd0f82640", null ],
+    [ "getSpeciesDestructionTimescales", "classgridfire_1_1engine_1_1DefinedEngineView.html#ab051d976dbecf325747d54efe7834d04", null ],
+    [ "getSpeciesIndex", "classgridfire_1_1engine_1_1DefinedEngineView.html#afb3c67ce20746b9acb2766920b8f397b", null ],
+    [ "getSpeciesStatus", "classgridfire_1_1engine_1_1DefinedEngineView.html#a65af092785759559f4697c7e66bef2e3", null ],
+    [ "getSpeciesTimescales", "classgridfire_1_1engine_1_1DefinedEngineView.html#a1edda1a27247480660cf7a63410f5799", null ],
+    [ "getStoichiometryMatrixEntry", "classgridfire_1_1engine_1_1DefinedEngineView.html#a600dd38a6011089527024f1625130935", null ],
+    [ "isStale", "classgridfire_1_1engine_1_1DefinedEngineView.html#a6ef3052fce2d5e4fdaec6659df64c2bc", null ],
+    [ "mapFullToView", "classgridfire_1_1engine_1_1DefinedEngineView.html#a391bc4b5d946ea606cf7661955191d12", null ],
+    [ "mapNetInToMolarAbundanceVector", "classgridfire_1_1engine_1_1DefinedEngineView.html#aa053696a7885b8e42562b2d22ee32d84", null ],
+    [ "mapViewToFull", "classgridfire_1_1engine_1_1DefinedEngineView.html#aa352f3ba0e689d3f81711c17f4f67dfc", null ],
+    [ "mapViewToFullReactionIndex", "classgridfire_1_1engine_1_1DefinedEngineView.html#afa9aeb6d11645e4b9cecf56fb63b51ef", null ],
+    [ "mapViewToFullSpeciesIndex", "classgridfire_1_1engine_1_1DefinedEngineView.html#ad6986fa5cda1d9ed9d4f54f444f402e8", null ],
+    [ "primeEngine", "classgridfire_1_1engine_1_1DefinedEngineView.html#a2bc32a84c9f5372587fca92f2da77595", null ],
+    [ "setNetworkReactions", "classgridfire_1_1engine_1_1DefinedEngineView.html#ae89529e13f2b7fd2febcfa5af40d4666", null ],
+    [ "setScreeningModel", "classgridfire_1_1engine_1_1DefinedEngineView.html#a68bd0e51d3e127e5f9fd74fdb8180fd9", null ],
+    [ "update", "classgridfire_1_1engine_1_1DefinedEngineView.html#a1d99b55bf8e94bc2397715aa1f916733", null ],
+    [ "validateNetworkState", "classgridfire_1_1engine_1_1DefinedEngineView.html#a91ea88e43c17f99ff0d95a8f54b09cbf", null ],
+    [ "m_activeReactions", "classgridfire_1_1engine_1_1DefinedEngineView.html#ae8ac4dc44a6c9f3588d6dd02b39a4cc9", null ],
+    [ "m_activeSpecies", "classgridfire_1_1engine_1_1DefinedEngineView.html#aad986ed7c9602ba042999cf0a30ed70c", null ],
+    [ "m_activeSpeciesVectorCache", "classgridfire_1_1engine_1_1DefinedEngineView.html#add093054fe3ba60f99b04f7f3bda4ba3", null ],
+    [ "m_baseEngine", "classgridfire_1_1engine_1_1DefinedEngineView.html#a1e46935f049537e675fb132564d6eacd", null ],
+    [ "m_isStale", "classgridfire_1_1engine_1_1DefinedEngineView.html#a3156dfef68cd3636f8cf7a13b5388e75", null ],
+    [ "m_logger", "classgridfire_1_1engine_1_1DefinedEngineView.html#a3ba348cf85f0098071d23b0a3cea7078", null ],
+    [ "m_reactionIndexMap", "classgridfire_1_1engine_1_1DefinedEngineView.html#aa9a26262300b0982b847a72425dc373a", null ],
+    [ "m_speciesIndexMap", "classgridfire_1_1engine_1_1DefinedEngineView.html#a26af4be40216ee3ea5b7fff49fe7a00c", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1engine_1_1DefinedEngineView__coll__graph.map b/docs/html/classgridfire_1_1engine_1_1DefinedEngineView__coll__graph.map
new file mode 100644
index 00000000..f5ca7e05
--- /dev/null
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+</g>
+<!-- Node20&#45;&gt;Node34 -->
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+<title>Node20&#45;&gt;Node34</title>
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+<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M306.97,-739.79C340.87,-792.2 431,-913 541.5,-913 541.5,-913 541.5,-913 1558,-913 1622.49,-913 1695.03,-903.12 1748.22,-894.01"/>
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+<text text-anchor="middle" x="1018.5" y="-916" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_reaction</text>
+</g>
+<!-- Node21&#45;&gt;Node17 -->
+<g id="edge22_Node000017_Node000021" class="edge">
+<title>Node21&#45;&gt;Node17</title>
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+<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M910.64,-132.22C959.13,-119.26 1031.2,-108.99 1083,-141 1098.22,-150.4 1087.26,-165.54 1101,-177 1110.85,-185.22 1123.39,-190.62 1135.71,-194.18"/>
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+</g>
+<text text-anchor="middle" x="1018.5" y="-144" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_reactionNameMap</text>
+</g>
+<!-- Node22 -->
+<g id="Node000022" class="node">
+<title>Node22</title>
+<g id="a_Node000022"><a xlink:title=" ">
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+<text text-anchor="start" x="811.5" y="-248" font-family="Helvetica,sans-Serif" font-size="10.00">std::unordered_set</text>
+<text text-anchor="middle" x="857" y="-237" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; size_t &gt;</text>
+</a>
+</g>
+</g>
+<!-- Node22&#45;&gt;Node17 -->
+<g id="edge24_Node000017_Node000022" class="edge">
+<title>Node22&#45;&gt;Node17</title>
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+</g>
+<text text-anchor="middle" x="1018.5" y="-235" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_reactionHashes</text>
+</g>
+<!-- Node23&#45;&gt;Node5 -->
+<g id="edge25_Node000005_Node000023" class="edge">
+<title>Node23&#45;&gt;Node5</title>
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+</g>
+<text text-anchor="middle" x="1373" y="-712" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_reactionIDMap</text>
+</g>
+<!-- Node24 -->
+<g id="Node000024" class="node">
+<title>Node24</title>
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+<text text-anchor="middle" x="857" y="-604.5" font-family="Helvetica,sans-Serif" font-size="10.00">std::string_view</text>
+</a>
+</g>
+</g>
+<!-- Node24&#45;&gt;Node23 -->
+<g id="edge26_Node000023_Node000024" class="edge">
+<title>Node24&#45;&gt;Node23</title>
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+<text text-anchor="middle" x="1018.5" y="-694" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> keys</text>
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+<text text-anchor="start" x="1118" y="-515.5" font-family="Helvetica,sans-Serif" font-size="10.00">std::unordered_map</text>
+<text text-anchor="start" x="1118" y="-504.5" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; std::string_view,</text>
+<text text-anchor="middle" x="1184.5" y="-493.5" font-family="Helvetica,sans-Serif" font-size="10.00"> fourdst::atomic::Species &gt;</text>
+</a>
+</g>
+</g>
+<!-- Node24&#45;&gt;Node28 -->
+<g id="edge32_Node000028_Node000024" class="edge">
+<title>Node24&#45;&gt;Node28</title>
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+<!-- Node25 -->
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+<text text-anchor="start" x="488" y="-610" font-family="Helvetica,sans-Serif" font-size="10.00">std::basic_string_view</text>
+<text text-anchor="middle" x="542.5" y="-599" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; Char &gt;</text>
+</a>
+</g>
+</g>
+<!-- Node25&#45;&gt;Node24 -->
+<g id="edge27_Node000024_Node000025" class="edge">
+<title>Node25&#45;&gt;Node24</title>
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+<text text-anchor="start" x="1135.5" y="-338" font-family="Helvetica,sans-Serif" font-size="10.00">std::vector&lt; fourdst</text>
+<text text-anchor="middle" x="1184.5" y="-327" font-family="Helvetica,sans-Serif" font-size="10.00">::atomic::Species &gt;</text>
+</a>
+</g>
+</g>
+<!-- Node26&#45;&gt;Node5 -->
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+<title>Node26&#45;&gt;Node5</title>
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+<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M1251.78,-335.58C1310.36,-338.87 1396.18,-350.65 1460,-389 1505.95,-416.61 1539.39,-474.63 1551.27,-497.47"/>
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+<text text-anchor="middle" x="1373" y="-392" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_networkSpecies</text>
+</g>
+<!-- Node27 -->
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+<title>Node27</title>
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+<text text-anchor="middle" x="857" y="-386.5" font-family="Helvetica,sans-Serif" font-size="10.00">Species</text>
+</a>
+</g>
+</g>
+<!-- Node27&#45;&gt;Node26 -->
+<g id="edge30_Node000026_Node000027" class="edge">
+<title>Node27&#45;&gt;Node26</title>
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+</g>
+<!-- Node27&#45;&gt;Node28 -->
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+<title>Node27&#45;&gt;Node28</title>
+<g id="a_edge33_Node000028_Node000027"><a xlink:title=" ">
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+<!-- Node29 -->
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+<text text-anchor="start" x="1118" y="-456.5" font-family="Helvetica,sans-Serif" font-size="10.00">std::unordered_map</text>
+<text text-anchor="start" x="1118" y="-445.5" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; fourdst::atomic::Species,</text>
+<text text-anchor="middle" x="1184.5" y="-434.5" font-family="Helvetica,sans-Serif" font-size="10.00"> size_t &gt;</text>
+</a>
+</g>
+</g>
+<!-- Node27&#45;&gt;Node29 -->
+<g id="edge35_Node000029_Node000027" class="edge">
+<title>Node27&#45;&gt;Node29</title>
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+<!-- Node30 -->
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+<text text-anchor="start" x="1124" y="-397.5" font-family="Helvetica,sans-Serif" font-size="10.00">std::unordered_map</text>
+<text text-anchor="start" x="1124" y="-386.5" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; size_t, fourdst::atomic</text>
+<text text-anchor="middle" x="1184.5" y="-375.5" font-family="Helvetica,sans-Serif" font-size="10.00">::Species &gt;</text>
+</a>
+</g>
+</g>
+<!-- Node27&#45;&gt;Node30 -->
+<g id="edge37_Node000030_Node000027" class="edge">
+<title>Node27&#45;&gt;Node30</title>
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+<text text-anchor="middle" x="1018.5" y="-392" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> elements</text>
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+<!-- Node45 -->
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+<text text-anchor="start" x="1328.5" y="-53" font-family="Helvetica,sans-Serif" font-size="10.00">std::set&lt; fourdst::</text>
+<text text-anchor="middle" x="1373" y="-42" font-family="Helvetica,sans-Serif" font-size="10.00">atomic::Species &gt;</text>
+</a>
+</g>
+</g>
+<!-- Node27&#45;&gt;Node45 -->
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+<title>Node27&#45;&gt;Node45</title>
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+</g>
+<!-- Node28&#45;&gt;Node5 -->
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+<title>Node28&#45;&gt;Node5</title>
+<g id="a_edge31_Node000005_Node000028"><a xlink:title=" ">
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+<text text-anchor="middle" x="1373" y="-510" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_networkSpeciesMap</text>
+</g>
+<!-- Node29&#45;&gt;Node5 -->
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+<title>Node29&#45;&gt;Node5</title>
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+</g>
+<text text-anchor="middle" x="1373" y="-494" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_speciesToIndexMap</text>
+</g>
+<!-- Node30&#45;&gt;Node5 -->
+<g id="edge36_Node000005_Node000030" class="edge">
+<title>Node30&#45;&gt;Node5</title>
+<g id="a_edge36_Node000005_Node000030"><a xlink:title=" ">
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+</g>
+<text text-anchor="middle" x="1373" y="-453" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_indexToSpeciesMap</text>
+</g>
+<!-- Node31 -->
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+<title>Node31</title>
+<g id="a_Node000031"><a xlink:title=" ">
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+<text text-anchor="start" x="1136" y="-825" font-family="Helvetica,sans-Serif" font-size="10.00">std::set&lt; std::pair</text>
+<text text-anchor="middle" x="1184.5" y="-814" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; size_t, size_t &gt; &gt;</text>
+</a>
+</g>
+</g>
+<!-- Node31&#45;&gt;Node5 -->
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+<title>Node31&#45;&gt;Node5</title>
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+<text text-anchor="middle" x="1373" y="-824" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_full_sparsity_set</text>
+</g>
+<!-- Node32 -->
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+<title>Node32</title>
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+<text text-anchor="start" x="2289" y="-572.5" font-family="Helvetica,sans-Serif" font-size="10.00">std::vector&lt; std::unique</text>
+<text text-anchor="start" x="2289" y="-561.5" font-family="Helvetica,sans-Serif" font-size="10.00">_ptr&lt; gridfire::engine</text>
+<text text-anchor="middle" x="2386" y="-550.5" font-family="Helvetica,sans-Serif" font-size="10.00">::GraphEngine::AtomicReverseRate &gt; &gt;</text>
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+</g>
+</g>
+<!-- Node32&#45;&gt;Node5 -->
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+<title>Node32&#45;&gt;Node5</title>
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+<text text-anchor="middle" x="1983" y="-543" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_atomicReverseRates</text>
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+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ada6a1295a92c2aede841672ecae0cede">calculateEpsDerivatives</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aa57fa5e58b98a03fba31bcddda8001d4">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html#a764fc091c72c12c8529105d7c96badb2">calculateRHSAndEnergy</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html">gridfire::engine::Engine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a41877719ae5e8de53c1692c7cf9bfbfc">collectComposition</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a53276f09346b531f8676db355e1219eb">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a15d53dac8b622a3b7d0f928a3995dbde">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const std::vector&lt; fourdst::atomic::Species &gt; &amp;activeSpecies) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a51d55a21be28e372021b2b8e5ecdc551">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a5e2c45a3e415b53e41def8f743f93464">generateStoichiometryMatrix</a>()=0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ac5a0def6b6af0bd93bf9057c25f048ff">getDepth</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a26b59a4c7622bf820c0eeec6a7522aa8">getNetworkReactions</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html#a3263c3fde2509d5d8ec4da3b6e946c48">getNetworkSpecies</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html">gridfire::engine::Engine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a24103027a38e02d4342161164554d332">getScreeningModel</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aefc5d0f7842b27a108ba1e4ca346e9a0">getSpeciesDestructionTimescales</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ac0f40017603e8e6887b75dc7360d7c5e">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a8aebefad50c1aa34207e118e92d7ccf0">getSpeciesStatus</a>(const fourdst::atomic::Species &amp;species) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aef6ed91d922c0b1733fd7835e99d0efe">getSpeciesTimescales</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a5ce6ff370e3f0964c6b2688fb3f4bb7e">getStoichiometryMatrixEntry</a>(const fourdst::atomic::Species &amp;species, const reaction::Reaction &amp;reaction) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a79423b9f67b4cac702547b4f1d8bd14c">isStale</a>(const NetIn &amp;netIn)=0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aa9d55b81c1963113aad86aa60c19676f">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a70e270bb50910c0055a75575c1ef1e95">primeEngine</a>(const NetIn &amp;netIn)=0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a2444b9ed3bc61920ce23c546444269e4">rebuild</a>(const fourdst::composition::CompositionAbstract &amp;comp, BuildDepthType depth)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ab321170954bffc53b1bedaf54f6976be">setNetworkReactions</a>(const reaction::ReactionSet &amp;reactions)=0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a50e76977d0dc3cc23d52b51842d35003">setScreeningModel</a>(screening::ScreeningType model)=0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a8dd85442ec54f20d91743c72364e36ff">update</a>(const NetIn &amp;netIn)=0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html#af0ea99416c28933d364a872fc6aff556">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html">gridfire::engine::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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diff --git a/docs/html/classgridfire_1_1engine_1_1DynamicEngine.html b/docs/html/classgridfire_1_1engine_1_1DynamicEngine.html
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+<title>GridFire: gridfire::engine::DynamicEngine Class Reference</title>
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1engine_1_1DynamicEngine-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::engine::DynamicEngine Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Abstract class for engines supporting Jacobian and stoichiometry operations.  
+ <a href="classgridfire_1_1engine_1_1DynamicEngine.html#details">More...</a></p>
+
+<p><code>#include &lt;engine_abstract.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::engine::DynamicEngine:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1engine_1_1DynamicEngine__inherit__graph.svg" width="100%" height="510"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::engine::DynamicEngine:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1engine_1_1DynamicEngine__coll__graph.svg" width="198" height="124"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a53276f09346b531f8676db355e1219eb" id="r_a53276f09346b531f8676db355e1219eb"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a53276f09346b531f8676db355e1219eb">generateJacobianMatrix</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const =0</td></tr>
+<tr class="memdesc:a53276f09346b531f8676db355e1219eb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate the Jacobian matrix for the current state.  <br /></td></tr>
+<tr class="separator:a53276f09346b531f8676db355e1219eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a15d53dac8b622a3b7d0f928a3995dbde" id="r_a15d53dac8b622a3b7d0f928a3995dbde"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a15d53dac8b622a3b7d0f928a3995dbde">generateJacobianMatrix</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const std::vector&lt; fourdst::atomic::Species &gt; &amp;activeSpecies) const =0</td></tr>
+<tr class="memdesc:a15d53dac8b622a3b7d0f928a3995dbde"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate the Jacobian matrix for the current state using a subset of active species.  <br /></td></tr>
+<tr class="separator:a15d53dac8b622a3b7d0f928a3995dbde"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a51d55a21be28e372021b2b8e5ecdc551" id="r_a51d55a21be28e372021b2b8e5ecdc551"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a51d55a21be28e372021b2b8e5ecdc551">generateJacobianMatrix</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const <a class="el" href="namespacegridfire_1_1engine.html#af5175018d2d1e78a8826dd33ec6d675f">SparsityPattern</a> &amp;sparsityPattern) const =0</td></tr>
+<tr class="memdesc:a51d55a21be28e372021b2b8e5ecdc551"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate the Jacobian matrix for the current state with a specified sparsity pattern.  <br /></td></tr>
+<tr class="separator:a51d55a21be28e372021b2b8e5ecdc551"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5e2c45a3e415b53e41def8f743f93464" id="r_a5e2c45a3e415b53e41def8f743f93464"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a5e2c45a3e415b53e41def8f743f93464">generateStoichiometryMatrix</a> ()=0</td></tr>
+<tr class="memdesc:a5e2c45a3e415b53e41def8f743f93464"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate the stoichiometry matrix for the network.  <br /></td></tr>
+<tr class="separator:a5e2c45a3e415b53e41def8f743f93464"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5ce6ff370e3f0964c6b2688fb3f4bb7e" id="r_a5ce6ff370e3f0964c6b2688fb3f4bb7e"><td class="memItemLeft" align="right" valign="top">virtual int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a5ce6ff370e3f0964c6b2688fb3f4bb7e">getStoichiometryMatrixEntry</a> (const fourdst::atomic::Species &amp;species, const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;reaction) const =0</td></tr>
+<tr class="memdesc:a5ce6ff370e3f0964c6b2688fb3f4bb7e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get an entry from the stoichiometry matrix.  <br /></td></tr>
+<tr class="separator:a5ce6ff370e3f0964c6b2688fb3f4bb7e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa57fa5e58b98a03fba31bcddda8001d4" id="r_aa57fa5e58b98a03fba31bcddda8001d4"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aa57fa5e58b98a03fba31bcddda8001d4">calculateMolarReactionFlow</a> (const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;reaction, const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const =0</td></tr>
+<tr class="memdesc:aa57fa5e58b98a03fba31bcddda8001d4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the molar reaction flow for a given reaction.  <br /></td></tr>
+<tr class="separator:aa57fa5e58b98a03fba31bcddda8001d4"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a26b59a4c7622bf820c0eeec6a7522aa8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the set of logical reactions in the network.  <br /></td></tr>
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+<tr class="memdesc:ab321170954bffc53b1bedaf54f6976be"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set the reactions for the network.  <br /></td></tr>
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+<tr class="memdesc:aef6ed91d922c0b1733fd7835e99d0efe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute timescales for all species in the network.  <br /></td></tr>
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+<tr class="memdesc:aefc5d0f7842b27a108ba1e4ca346e9a0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compute destruction timescales for all species in the network.  <br /></td></tr>
+<tr class="separator:aefc5d0f7842b27a108ba1e4ca346e9a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8dd85442ec54f20d91743c72364e36ff" id="r_a8dd85442ec54f20d91743c72364e36ff"><td class="memItemLeft" align="right" valign="top">virtual fourdst::composition::Composition&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a8dd85442ec54f20d91743c72364e36ff">update</a> (const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;netIn)=0</td></tr>
+<tr class="memdesc:a8dd85442ec54f20d91743c72364e36ff"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update the internal state of the engine.  <br /></td></tr>
+<tr class="separator:a8dd85442ec54f20d91743c72364e36ff"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a79423b9f67b4cac702547b4f1d8bd14c" id="r_a79423b9f67b4cac702547b4f1d8bd14c"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a79423b9f67b4cac702547b4f1d8bd14c">isStale</a> (const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;netIn)=0</td></tr>
+<tr class="memdesc:a79423b9f67b4cac702547b4f1d8bd14c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if the engine's internal state is stale.  <br /></td></tr>
+<tr class="separator:a79423b9f67b4cac702547b4f1d8bd14c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a50e76977d0dc3cc23d52b51842d35003" id="r_a50e76977d0dc3cc23d52b51842d35003"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a50e76977d0dc3cc23d52b51842d35003">setScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a> model)=0</td></tr>
+<tr class="memdesc:a50e76977d0dc3cc23d52b51842d35003"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set the electron screening model.  <br /></td></tr>
+<tr class="separator:a50e76977d0dc3cc23d52b51842d35003"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a24103027a38e02d4342161164554d332" id="r_a24103027a38e02d4342161164554d332"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a24103027a38e02d4342161164554d332">getScreeningModel</a> () const =0</td></tr>
+<tr class="memdesc:a24103027a38e02d4342161164554d332"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the current electron screening model.  <br /></td></tr>
+<tr class="separator:a24103027a38e02d4342161164554d332"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac0f40017603e8e6887b75dc7360d7c5e" id="r_ac0f40017603e8e6887b75dc7360d7c5e"><td class="memItemLeft" align="right" valign="top">virtual size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ac0f40017603e8e6887b75dc7360d7c5e">getSpeciesIndex</a> (const fourdst::atomic::Species &amp;species) const =0</td></tr>
+<tr class="memdesc:ac0f40017603e8e6887b75dc7360d7c5e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the index of a species in the network.  <br /></td></tr>
+<tr class="separator:ac0f40017603e8e6887b75dc7360d7c5e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa9d55b81c1963113aad86aa60c19676f" id="r_aa9d55b81c1963113aad86aa60c19676f"><td class="memItemLeft" align="right" valign="top">virtual std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aa9d55b81c1963113aad86aa60c19676f">mapNetInToMolarAbundanceVector</a> (const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;netIn) const =0</td></tr>
+<tr class="memdesc:aa9d55b81c1963113aad86aa60c19676f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Map a <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> object to a vector of molar abundances.  <br /></td></tr>
+<tr class="separator:aa9d55b81c1963113aad86aa60c19676f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a70e270bb50910c0055a75575c1ef1e95" id="r_a70e270bb50910c0055a75575c1ef1e95"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html">PrimingReport</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a70e270bb50910c0055a75575c1ef1e95">primeEngine</a> (const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;netIn)=0</td></tr>
+<tr class="memdesc:a70e270bb50910c0055a75575c1ef1e95"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prime the engine with initial conditions.  <br /></td></tr>
+<tr class="separator:a70e270bb50910c0055a75575c1ef1e95"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac5a0def6b6af0bd93bf9057c25f048ff" id="r_ac5a0def6b6af0bd93bf9057c25f048ff"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">BuildDepthType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ac5a0def6b6af0bd93bf9057c25f048ff">getDepth</a> () const</td></tr>
+<tr class="memdesc:ac5a0def6b6af0bd93bf9057c25f048ff"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the depth of the network.  <br /></td></tr>
+<tr class="separator:ac5a0def6b6af0bd93bf9057c25f048ff"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2444b9ed3bc61920ce23c546444269e4" id="r_a2444b9ed3bc61920ce23c546444269e4"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a2444b9ed3bc61920ce23c546444269e4">rebuild</a> (const fourdst::composition::CompositionAbstract &amp;comp, <a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">BuildDepthType</a> depth)</td></tr>
+<tr class="memdesc:a2444b9ed3bc61920ce23c546444269e4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Rebuild the network with a specified depth.  <br /></td></tr>
+<tr class="separator:a2444b9ed3bc61920ce23c546444269e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a41877719ae5e8de53c1692c7cf9bfbfc" id="r_a41877719ae5e8de53c1692c7cf9bfbfc"><td class="memItemLeft" align="right" valign="top">virtual fourdst::composition::Composition&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a41877719ae5e8de53c1692c7cf9bfbfc">collectComposition</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const =0</td></tr>
+<tr class="memdesc:a41877719ae5e8de53c1692c7cf9bfbfc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Recursively collect composition from current engine and any sub engines if they exist.  <br /></td></tr>
+<tr class="separator:a41877719ae5e8de53c1692c7cf9bfbfc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8aebefad50c1aa34207e118e92d7ccf0" id="r_a8aebefad50c1aa34207e118e92d7ccf0"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="namespacegridfire_1_1engine.html#a83c9d755597668bba3cf00cd0ea10ee3">SpeciesStatus</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a8aebefad50c1aa34207e118e92d7ccf0">getSpeciesStatus</a> (const fourdst::atomic::Species &amp;species) const =0</td></tr>
+<tr class="memdesc:a8aebefad50c1aa34207e118e92d7ccf0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the status of a species in the network.  <br /></td></tr>
+<tr class="separator:a8aebefad50c1aa34207e118e92d7ccf0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1engine_1_1Engine"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1engine_1_1Engine')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1engine_1_1Engine.html">gridfire::engine::Engine</a></td></tr>
+<tr class="memitem:af0ea99416c28933d364a872fc6aff556 inherit pub_methods_classgridfire_1_1engine_1_1Engine" id="r_af0ea99416c28933d364a872fc6aff556"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1Engine.html#af0ea99416c28933d364a872fc6aff556">~Engine</a> ()=default</td></tr>
+<tr class="memdesc:af0ea99416c28933d364a872fc6aff556 inherit pub_methods_classgridfire_1_1engine_1_1Engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:af0ea99416c28933d364a872fc6aff556 inherit pub_methods_classgridfire_1_1engine_1_1Engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3263c3fde2509d5d8ec4da3b6e946c48 inherit pub_methods_classgridfire_1_1engine_1_1Engine" id="r_a3263c3fde2509d5d8ec4da3b6e946c48"><td class="memItemLeft" align="right" valign="top">virtual const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1Engine.html#a3263c3fde2509d5d8ec4da3b6e946c48">getNetworkSpecies</a> () const =0</td></tr>
+<tr class="memdesc:a3263c3fde2509d5d8ec4da3b6e946c48 inherit pub_methods_classgridfire_1_1engine_1_1Engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the list of species in the network.  <br /></td></tr>
+<tr class="separator:a3263c3fde2509d5d8ec4da3b6e946c48 inherit pub_methods_classgridfire_1_1engine_1_1Engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a764fc091c72c12c8529105d7c96badb2 inherit pub_methods_classgridfire_1_1engine_1_1Engine" id="r_a764fc091c72c12c8529105d7c96badb2"><td class="memItemLeft" align="right" valign="top">virtual std::expected&lt; <a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1Engine.html#a764fc091c72c12c8529105d7c96badb2">calculateRHSAndEnergy</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const =0</td></tr>
+<tr class="memdesc:a764fc091c72c12c8529105d7c96badb2 inherit pub_methods_classgridfire_1_1engine_1_1Engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the right-hand side (dY/dt) and energy generation.  <br /></td></tr>
+<tr class="separator:a764fc091c72c12c8529105d7c96badb2 inherit pub_methods_classgridfire_1_1engine_1_1Engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Abstract class for engines supporting Jacobian and stoichiometry operations. </p>
+<p>Extends <a class="el" href="classgridfire_1_1engine_1_1Engine.html" title="Abstract base class for a reaction network engine.">Engine</a> with additional methods for:</p><ul>
+<li>Generating and accessing the Jacobian matrix (for implicit solvers).</li>
+<li>Generating and accessing the stoichiometry matrix.</li>
+<li>Calculating molar reaction flows for individual reactions.</li>
+<li>Accessing the set of logical reactions in the network.</li>
+<li>Computing timescales for each species.</li>
+</ul>
+<p>Intended usage: Derive from this class to implement engines that support advanced solver features such as implicit integration, sensitivity analysis, QSE (Quasi-Steady-State Equilibrium) handling, and more. Generally this will be the main engine type </p>
+</div><h2 class="groupheader">Member Function Documentation</h2>
+<a id="ada6a1295a92c2aede841672ecae0cede" name="ada6a1295a92c2aede841672ecae0cede"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ada6a1295a92c2aede841672ecae0cede">&#9670;&#160;</a></span>calculateEpsDerivatives()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html">EnergyDerivatives</a> gridfire::engine::DynamicEngine::calculateEpsDerivatives </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculate the derivatives of the energy generation rate with respect to T and rho. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html" title="Structure holding derivatives of energy generation rate with respect to T and rho.">EnergyDerivatives</a> containing dEps/dT and dEps/dRho.</dd></dl>
+<p>This method computes the partial derivatives of the specific nuclear energy generation rate with respect to temperature and density for the current state. </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ac7e4624ed6eee72e7a8df42381d098bb">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a17bbc9c0d480a8533acb193cb9a46fea">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a2a866a7ba9572d36efab8efe72a063f5">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#ac720fcea2f0304c3d7e7ba8a6dfb84da">gridfire::engine::MultiscalePartitioningEngineView</a>, and <a class="el" href="classPyDynamicEngine.html#a6832a7898da51017a20f578e33cba729">PyDynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="aa57fa5e58b98a03fba31bcddda8001d4" name="aa57fa5e58b98a03fba31bcddda8001d4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa57fa5e58b98a03fba31bcddda8001d4">&#9670;&#160;</a></span>calculateMolarReactionFlow()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual double gridfire::engine::DynamicEngine::calculateMolarReactionFlow </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculate the molar reaction flow for a given reaction. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The reaction for which to calculate the flow. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Molar flow rate for the reaction (e.g., mol/g/s).</dd></dl>
+<p>This method computes the net rate at which the given reaction proceeds under the current state. </p>
+
+<p>Implemented in <a class="el" href="classPyDynamicEngine.html#a8facba88b6df6e016ce53a0ff3cff125">PyDynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#aaff9cdc04ca01e7c927d36476bcf5da4">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a5bd0174105e836dd98c71ab495357e5b">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a2f0ad1febc467bce87b5c6ad29b059fb">gridfire::engine::DefinedEngineView</a>, and <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#af030c9bd6a95686a09429b4619ad188c">gridfire::engine::MultiscalePartitioningEngineView</a>.</p>
+
+</div>
+</div>
+<a id="a41877719ae5e8de53c1692c7cf9bfbfc" name="a41877719ae5e8de53c1692c7cf9bfbfc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a41877719ae5e8de53c1692c7cf9bfbfc">&#9670;&#160;</a></span>collectComposition()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual fourdst::composition::Composition gridfire::engine::DynamicEngine::collectComposition </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Recursively collect composition from current engine and any sub engines if they exist. </p>
+<p>If species i is defined in comp and in any sub engine or self composition then the molar abundance of species i in the returned composition will be that defined in comp. If there are species defined in sub engine compositions which are not defined in comp then their molar abundances will be based on the reported values from each sub engine. </p><dl class="section note"><dt>Note</dt><dd>It is up to each engine to decide how to handle filling in the return composition. </dd>
+<dd>
+These methods return an unfinalized composition which must then be finalized by the caller </dd></dl>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Input composition to "normalize". </td></tr>
+    <tr><td class="paramname">T9</td><td></td></tr>
+    <tr><td class="paramname">rho</td><td></td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>An updated composition which is a superset of comp. This may contain species which were culled, for example, by either QSE partitioning or reaction flow rate culling </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ae9d4d99c791876c012697fe5a0ba06c8">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a77d4c08eecfad5cc414161d0fc8db946">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a25dc44af1a58561b665103b16abe9bbc">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a97d9616558f681ad010ee452394f3519">gridfire::engine::MultiscalePartitioningEngineView</a>, and <a class="el" href="classPyDynamicEngine.html#a239826d90cb5db236e68230f7ac84bcb">PyDynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a53276f09346b531f8676db355e1219eb" name="a53276f09346b531f8676db355e1219eb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a53276f09346b531f8676db355e1219eb">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[1/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> gridfire::engine::DynamicEngine::generateJacobianMatrix </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generate the Jacobian matrix for the current state. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method must compute and store the Jacobian matrix (∂(dY/dt)_i/∂Y_j) for the current state. The matrix can then be accessed via getJacobianMatrixEntry(). </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a9ca013f203d7a3ef9d1b9ee4b2982cb0">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a2a44dfae512b370bad6b977330e0636a">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a4d90439d99da61107d95319b970760bc">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a8950fb9c0c36684538805de4f0acf82e">gridfire::engine::MultiscalePartitioningEngineView</a>, and <a class="el" href="classPyDynamicEngine.html#a298f700c647d2c3973d2a35d370c823e">PyDynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a51d55a21be28e372021b2b8e5ecdc551" name="a51d55a21be28e372021b2b8e5ecdc551"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a51d55a21be28e372021b2b8e5ecdc551">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[2/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> gridfire::engine::DynamicEngine::generateJacobianMatrix </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1engine.html#af5175018d2d1e78a8826dd33ec6d675f">SparsityPattern</a> &amp;&#160;</td>
+          <td class="paramname"><em>sparsityPattern</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generate the Jacobian matrix for the current state with a specified sparsity pattern. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+    <tr><td class="paramname">sparsityPattern</td><td>The sparsity pattern to use for the Jacobian matrix.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method must compute and store the Jacobian matrix (∂(dY/dt)_i/∂Y_j) for the current state using automatic differentiation, taking into account the provided sparsity pattern. The matrix can then be accessed via <code>getJacobianMatrixEntry()</code>.</p>
+<dl class="section see"><dt>See also</dt><dd>getJacobianMatrixEntry() </dd></dl>
+
+<p>Implemented in <a class="el" href="classPyDynamicEngine.html#a204643754cac3cf37c550ecd32f659fe">PyDynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ac4f9cd4e2304f681dd9af0f7b751cb81">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#ae894f46c67a8b8e02b8988a6b73dc9e5">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a1de5867a0e633de0d0d96ac4fbb141e5">gridfire::engine::DefinedEngineView</a>, and <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a64b6e7e5794cc42edf72899d348d15af">gridfire::engine::MultiscalePartitioningEngineView</a>.</p>
+
+</div>
+</div>
+<a id="a15d53dac8b622a3b7d0f928a3995dbde" name="a15d53dac8b622a3b7d0f928a3995dbde"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a15d53dac8b622a3b7d0f928a3995dbde">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[3/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> gridfire::engine::DynamicEngine::generateJacobianMatrix </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>activeSpecies</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generate the Jacobian matrix for the current state using a subset of active species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+    <tr><td class="paramname">activeSpecies</td><td>The set of species to include in the Jacobian calculation.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method must compute and store the Jacobian matrix (∂(dY/dt)_i/∂Y_j) for the current state, considering only the specified subset of active species. The matrix can then be accessed via getJacobianMatrixEntry(). </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#acc28ff627d46d8d4066a1acf830cbe27">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a1b7b3b0b449d0859d57f99188cdd83d6">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a4966f8cbc859ce2a8a465516d0c0abd0">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aae6c00cff4f7a992513d1e9481436f8f">gridfire::engine::MultiscalePartitioningEngineView</a>, and <a class="el" href="classPyDynamicEngine.html#a2b1c054b250abccc2af9a7275c68df4a">PyDynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a5e2c45a3e415b53e41def8f743f93464" name="a5e2c45a3e415b53e41def8f743f93464"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5e2c45a3e415b53e41def8f743f93464">&#9670;&#160;</a></span>generateStoichiometryMatrix()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual void gridfire::engine::DynamicEngine::generateStoichiometryMatrix </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generate the stoichiometry matrix for the network. </p>
+<p>This method must compute and store the stoichiometry matrix, which encodes the net change of each species in each reaction. </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a2221feee40542efa1c07f01225bd3828">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a754445722193f11ae534b7c0afa9b8aa">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#af4049e5570bd143d41cab1d4005b6824">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a552fa7e1f4e066fa577c55500e782014">gridfire::engine::MultiscalePartitioningEngineView</a>, and <a class="el" href="classPyDynamicEngine.html#a2066649ca11a869c054079ea12d8d0e9">PyDynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="ac5a0def6b6af0bd93bf9057c25f048ff" name="ac5a0def6b6af0bd93bf9057c25f048ff"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac5a0def6b6af0bd93bf9057c25f048ff">&#9670;&#160;</a></span>getDepth()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">BuildDepthType</a> gridfire::engine::DynamicEngine::getDepth </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get the depth of the network. </p>
+<dl class="section return"><dt>Returns</dt><dd>The depth of the network, which may indicate the level of detail or complexity in the reaction network.</dd></dl>
+<p>This method is intended to provide information about the network's structure, such as how many layers of reactions or species are present. It can be useful for diagnostics and understanding the network's complexity. </p>
+
+<p>Reimplemented in <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ab29d6c4a7c789cf3d75767833c80c658">gridfire::engine::GraphEngine</a>, and <a class="el" href="classPyDynamicEngine.html#a541cf022fe3253279f8f1309c10556d7">PyDynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a26b59a4c7622bf820c0eeec6a7522aa8" name="a26b59a4c7622bf820c0eeec6a7522aa8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a26b59a4c7622bf820c0eeec6a7522aa8">&#9670;&#160;</a></span>getNetworkReactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp; gridfire::engine::DynamicEngine::getNetworkReactions </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get the set of logical reactions in the network. </p>
+<dl class="section return"><dt>Returns</dt><dd>Reference to the LogicalReactionSet containing all reactions. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a749cc482a707cb3a38bdd5de894716e2">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a722ea6e07d46f739c29ad681c7500f8c">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a81732c1b2d08451849c1ddf833246892">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a9dc9de4359beb704b94024f159ae619d">gridfire::engine::MultiscalePartitioningEngineView</a>, and <a class="el" href="classPyDynamicEngine.html#a1d5143640666631501cf229bc491516e">PyDynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a24103027a38e02d4342161164554d332" name="a24103027a38e02d4342161164554d332"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a24103027a38e02d4342161164554d332">&#9670;&#160;</a></span>getScreeningModel()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a> gridfire::engine::DynamicEngine::getScreeningModel </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get the current electron screening model. </p>
+<dl class="section return"><dt>Returns</dt><dd>The currently active screening model type.</dd></dl>
+<dl class="section user"><dt>Usage Example:</dt><dd><div class="fragment"><div class="line"><a class="code hl_enumeration" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a> currentModel = myEngine.getScreeningModel();</div>
+<div class="ttc" id="anamespacegridfire_1_1screening_html_aa82aafbc4f8c28d0a75b60798e3a7d25"><div class="ttname"><a href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">gridfire::screening::ScreeningType</a></div><div class="ttdeci">ScreeningType</div><div class="ttdoc">Enumerates the available plasma screening models.</div><div class="ttdef"><b>Definition</b> screening_types.h:15</div></div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a62c6f3bebe931bcd412fb492deb634a5">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#acbd5b36262fa7d40f3274f4be6f0b8f6">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a413b111f6a643d7aecbae01dd0f82640">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#accdd09720d44cc5efb1ee267706f0500">gridfire::engine::MultiscalePartitioningEngineView</a>, and <a class="el" href="classPyDynamicEngine.html#ab4cfdca5e15957c5cef75ffa6dedeee5">PyDynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="aefc5d0f7842b27a108ba1e4ca346e9a0" name="aefc5d0f7842b27a108ba1e4ca346e9a0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aefc5d0f7842b27a108ba1e4ca346e9a0">&#9670;&#160;</a></span>getSpeciesDestructionTimescales()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt; gridfire::engine::DynamicEngine::getSpeciesDestructionTimescales </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Compute destruction timescales for all species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Map from Species to their destruction timescales (s).</dd></dl>
+<p>This method estimates the destruction timescale for each species, which can be useful for understanding reaction flows and equilibrium states. </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ae026bc87dc8b24fd78d412ac7e58b148">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a420666d17650736e20402514294f9a14">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ab051d976dbecf325747d54efe7834d04">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a27d68f2e6c4572445cd94dc472470a01">gridfire::engine::MultiscalePartitioningEngineView</a>, and <a class="el" href="classPyDynamicEngine.html#a8d34faa3d6ea804a3467979858d33535">PyDynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="ac0f40017603e8e6887b75dc7360d7c5e" name="ac0f40017603e8e6887b75dc7360d7c5e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac0f40017603e8e6887b75dc7360d7c5e">&#9670;&#160;</a></span>getSpeciesIndex()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual size_t gridfire::engine::DynamicEngine::getSpeciesIndex </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get the index of a species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to look up.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method allows querying the index of a specific species in the engine's internal representation. It is useful for accessing species data efficiently. </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ad67b0022cc783e63ae1954a04c4a68e1">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#ad7a82578006e5c55ca7716e7ab7e710c">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#afb3c67ce20746b9acb2766920b8f397b">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#ae0c02c830cf45568a7c4d35d4ed15e95">gridfire::engine::MultiscalePartitioningEngineView</a>, and <a class="el" href="classPyDynamicEngine.html#a95d10a7b240d543a1bc6c67ddf2dc8e0">PyDynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a8aebefad50c1aa34207e118e92d7ccf0" name="a8aebefad50c1aa34207e118e92d7ccf0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8aebefad50c1aa34207e118e92d7ccf0">&#9670;&#160;</a></span>getSpeciesStatus()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="namespacegridfire_1_1engine.html#a83c9d755597668bba3cf00cd0ea10ee3">SpeciesStatus</a> gridfire::engine::DynamicEngine::getSpeciesStatus </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get the status of a species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to check. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>SpeciesStatus indicating whether the species is active, inactive, or culled.</dd></dl>
+<p>This method allows querying the current status of a specific species within the engine's network. </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#afe93df16c69e7e10658c82874759dd2f">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a5166197fd61060b2a9a445f707ee871b">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a65af092785759559f4697c7e66bef2e3">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aec5ebaccf625e39d0fa6c1330855d008">gridfire::engine::MultiscalePartitioningEngineView</a>, and <a class="el" href="classPyDynamicEngine.html#a2947824dca9662e113153de5c6516609">PyDynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="aef6ed91d922c0b1733fd7835e99d0efe" name="aef6ed91d922c0b1733fd7835e99d0efe"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aef6ed91d922c0b1733fd7835e99d0efe">&#9670;&#160;</a></span>getSpeciesTimescales()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt; gridfire::engine::DynamicEngine::getSpeciesTimescales </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Compute timescales for all species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Map from Species to their characteristic timescales (s).</dd></dl>
+<p>This method estimates the timescale for abundance change of each species, which can be used for timestep control, diagnostics, and reaction network culling. </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a3c9b57d2842b6b5535313be845ca6175">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#ade5dad29a79209e677b259a9b28c5133">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a1edda1a27247480660cf7a63410f5799">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a86390e410db48addfe8dbd094743c38e">gridfire::engine::MultiscalePartitioningEngineView</a>, and <a class="el" href="classPyDynamicEngine.html#a71678a567bb0cedd8a97aff9ceddd814">PyDynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a5ce6ff370e3f0964c6b2688fb3f4bb7e" name="a5ce6ff370e3f0964c6b2688fb3f4bb7e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5ce6ff370e3f0964c6b2688fb3f4bb7e">&#9670;&#160;</a></span>getStoichiometryMatrixEntry()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual int gridfire::engine::DynamicEngine::getStoichiometryMatrixEntry </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get an entry from the stoichiometry matrix. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>species to look up stoichiometry for. </td></tr>
+    <tr><td class="paramname">reaction</td><td>reaction to find </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Stoichiometric coefficient for the species in the reaction.</dd></dl>
+<p>The stoichiometry matrix must have been generated by <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a5e2c45a3e415b53e41def8f743f93464" title="Generate the stoichiometry matrix for the network.">generateStoichiometryMatrix()</a>. </p>
+
+<p>Implemented in <a class="el" href="classPyDynamicEngine.html#a3dd5cf419f25e76e144af35df15a2067">PyDynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#aec867f0b43e74c8157f7d5085b55bb96">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#aae6d8bab169721f0b89682ce8c4b4f10">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a600dd38a6011089527024f1625130935">gridfire::engine::DefinedEngineView</a>, and <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a1372e7a823841c819f6c1a15d38217a6">gridfire::engine::MultiscalePartitioningEngineView</a>.</p>
+
+</div>
+</div>
+<a id="a79423b9f67b4cac702547b4f1d8bd14c" name="a79423b9f67b4cac702547b4f1d8bd14c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a79423b9f67b4cac702547b4f1d8bd14c">&#9670;&#160;</a></span>isStale()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual bool gridfire::engine::DynamicEngine::isStale </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Check if the engine's internal state is stale. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>A struct containing the current network input, such as temperature, density, and composition. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the engine's state is stale and needs to be updated; false otherwise.</dd></dl>
+<p>This method allows derived classes to determine if their internal state is out-of-date with respect to the provided network conditions. If the engine is stale, it may require a call to <code><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a8dd85442ec54f20d91743c72364e36ff" title="Update the internal state of the engine.">update()</a></code> before performing calculations.</p>
+<dl class="section user"><dt>Usage Example:</dt><dd><div class="fragment"><div class="line"><a class="code hl_struct" href="structgridfire_1_1NetIn.html">NetIn</a> input = { ... };</div>
+<div class="line"><span class="keywordflow">if</span> (myEngine.isStale(input)) {</div>
+<div class="line">    <span class="comment">// Update the engine before proceeding</span></div>
+<div class="line">}</div>
+<div class="ttc" id="astructgridfire_1_1NetIn_html"><div class="ttname"><a href="structgridfire_1_1NetIn.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> types.h:27</div></div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implemented in <a class="el" href="classPyDynamicEngine.html#a55bf19ed7534a312a36faf74753f7b14">PyDynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a07acc57c1015903ce3d1b0d0b7f09358">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a6c08b4235996d12472d2a327eab8e984">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a6ef3052fce2d5e4fdaec6659df64c2bc">gridfire::engine::DefinedEngineView</a>, and <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a10dd189ba40dbb604fdf55746b5d4b79">gridfire::engine::MultiscalePartitioningEngineView</a>.</p>
+
+</div>
+</div>
+<a id="aa9d55b81c1963113aad86aa60c19676f" name="aa9d55b81c1963113aad86aa60c19676f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa9d55b81c1963113aad86aa60c19676f">&#9670;&#160;</a></span>mapNetInToMolarAbundanceVector()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::vector&lt; double &gt; gridfire::engine::DynamicEngine::mapNetInToMolarAbundanceVector </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Map a <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> object to a vector of molar abundances. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>The input conditions for the network. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of molar abundances corresponding to the species in the network.</dd></dl>
+<p>This method converts the input conditions into a vector of molar abundances, which can be used for further calculations or diagnostics. </p>
+
+<p>Implemented in <a class="el" href="classPyDynamicEngine.html#a61bb4b430fe740cfb2c24e5cc673e4ac">PyDynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a915602acb18a69f34076bea401ffb49d">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a24cc7e1a7471d707707b4d44ebd81068">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#aa053696a7885b8e42562b2d22ee32d84">gridfire::engine::DefinedEngineView</a>, and <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aa839c3893ff9fb8e5a4187224dac7b47">gridfire::engine::MultiscalePartitioningEngineView</a>.</p>
+
+</div>
+</div>
+<a id="a70e270bb50910c0055a75575c1ef1e95" name="a70e270bb50910c0055a75575c1ef1e95"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a70e270bb50910c0055a75575c1ef1e95">&#9670;&#160;</a></span>primeEngine()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html">PrimingReport</a> gridfire::engine::DynamicEngine::primeEngine </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Prime the engine with initial conditions. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>The input conditions for the network. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html" title="Captures the result of a network priming operation.">PrimingReport</a> containing information about the priming process.</dd></dl>
+<p>This method is used to prepare the engine for calculations by setting up initial conditions, reactions, and species. It may involve compiling reaction rates, initializing internal data structures, and performing any necessary pre-computation. </p>
+
+<p>Implemented in <a class="el" href="classPyDynamicEngine.html#a6118af81e45d2850f7a2517891147274">PyDynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#acc7f7fb7f0ef96135e7bda4bb532792e">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a955a337f89a375637ac48071be45c54c">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a2bc32a84c9f5372587fca92f2da77595">gridfire::engine::DefinedEngineView</a>, and <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#afabb6222bd6cbe3277b6c8639203be25">gridfire::engine::MultiscalePartitioningEngineView</a>.</p>
+
+</div>
+</div>
+<a id="a2444b9ed3bc61920ce23c546444269e4" name="a2444b9ed3bc61920ce23c546444269e4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2444b9ed3bc61920ce23c546444269e4">&#9670;&#160;</a></span>rebuild()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual void gridfire::engine::DynamicEngine::rebuild </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">BuildDepthType</a>&#160;</td>
+          <td class="paramname"><em>depth</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Rebuild the network with a specified depth. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The composition to rebuild the network with. </td></tr>
+    <tr><td class="paramname">depth</td><td>The desired depth of the network.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method is intended to allow dynamic adjustment of the network's depth, which may involve adding or removing species and reactions based on the specified depth. However, not all engines support this operation. </p>
+
+<p>Reimplemented in <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a6c5245a27da1b45e10fb410518b79d4e">gridfire::engine::GraphEngine</a>, and <a class="el" href="classPyDynamicEngine.html#a25e52496b36d731127603c31e9dcaa97">PyDynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="ab321170954bffc53b1bedaf54f6976be" name="ab321170954bffc53b1bedaf54f6976be"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab321170954bffc53b1bedaf54f6976be">&#9670;&#160;</a></span>setNetworkReactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual void gridfire::engine::DynamicEngine::setNetworkReactions </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Set the reactions for the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of reactions to use in the network.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method replaces the current set of reactions in the network with the provided set. It marks the engine as stale, requiring regeneration of matrices and recalculation of rates. </p>
+
+<p>Implemented in <a class="el" href="classPyDynamicEngine.html#af469cba3be850d53f659ec173f0eb4e4">PyDynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a90251650123d0d8ce0281e18c4476f45">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a5dbfcafa606c3242dc4ced62c2494a2d">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ae89529e13f2b7fd2febcfa5af40d4666">gridfire::engine::DefinedEngineView</a>, and <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aa378d0e0fa6018b989d83945daa47952">gridfire::engine::MultiscalePartitioningEngineView</a>.</p>
+
+</div>
+</div>
+<a id="a50e76977d0dc3cc23d52b51842d35003" name="a50e76977d0dc3cc23d52b51842d35003"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a50e76977d0dc3cc23d52b51842d35003">&#9670;&#160;</a></span>setScreeningModel()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual void gridfire::engine::DynamicEngine::setScreeningModel </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a>&#160;</td>
+          <td class="paramname"><em>model</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Set the electron screening model. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">model</td><td>The type of screening model to use for reaction rate calculations.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method allows changing the screening model at runtime. Screening corrections account for the electrostatic shielding of nuclei by electrons, which affects reaction rates in dense stellar plasmas.</p>
+<dl class="section user"><dt>Usage Example:</dt><dd><div class="fragment"><div class="line">myEngine.setScreeningModel(<a class="code hl_enumvalue" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8">screening::ScreeningType::WEAK</a>);</div>
+<div class="ttc" id="anamespacegridfire_1_1screening_html_aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8"><div class="ttname"><a href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8">gridfire::screening::ScreeningType::WEAK</a></div><div class="ttdeci">@ WEAK</div><div class="ttdoc">Weak screening model (Salpeter, 1954).</div></div>
+</div><!-- fragment --></dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The engine will use the specified screening model for subsequent rate calculations. </dd></dl>
+
+<p>Implemented in <a class="el" href="classPyDynamicEngine.html#afa3abfd612033336a656f092721c14ac">PyDynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#af842981deaf84a698b6cbfa66abcb715">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#ab050409db954a3fa593633f9d2cd5d89">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a68bd0e51d3e127e5f9fd74fdb8180fd9">gridfire::engine::DefinedEngineView</a>, and <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#ad11aa1e168ec03d0c3ed90eeddcefe52">gridfire::engine::MultiscalePartitioningEngineView</a>.</p>
+
+</div>
+</div>
+<a id="a8dd85442ec54f20d91743c72364e36ff" name="a8dd85442ec54f20d91743c72364e36ff"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8dd85442ec54f20d91743c72364e36ff">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual fourdst::composition::Composition gridfire::engine::DynamicEngine::update </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Update the internal state of the engine. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>A struct containing the current network input, such as temperature, density, and composition.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method is intended to be implemented by derived classes to update their internal state based on the provided network conditions. For example, an adaptive engine might use this to re-evaluate which reactions and species are active. For other engines that do not support manually updating, this method might do nothing.</p>
+<dl class="section user"><dt>Usage Example:</dt><dd><div class="fragment"><div class="line"><a class="code hl_struct" href="structgridfire_1_1NetIn.html">NetIn</a> input = { ... };</div>
+<div class="line">myEngine.update(input);</div>
+</div><!-- fragment --></dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The internal state of the engine is updated to reflect the new conditions. </dd></dl>
+
+<p>Implemented in <a class="el" href="classPyDynamicEngine.html#af8e6a8cd44f278535d7bcc9a896d6da8">PyDynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a7f6d98a9a4f22f1bbc015b1cbb8198e3">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a1d99b55bf8e94bc2397715aa1f916733">gridfire::engine::DefinedEngineView</a>, and <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a28c8ac1ec594cf55a297e3f9586e214a">gridfire::engine::MultiscalePartitioningEngineView</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/engine/<a class="el" href="engine__abstract_8h.html">engine_abstract.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1engine.html">engine</a></li><li class="navelem"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
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+</html>
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+    [ "generateJacobianMatrix", "classgridfire_1_1engine_1_1DynamicEngine.html#a53276f09346b531f8676db355e1219eb", null ],
+    [ "generateJacobianMatrix", "classgridfire_1_1engine_1_1DynamicEngine.html#a51d55a21be28e372021b2b8e5ecdc551", null ],
+    [ "generateJacobianMatrix", "classgridfire_1_1engine_1_1DynamicEngine.html#a15d53dac8b622a3b7d0f928a3995dbde", null ],
+    [ "generateStoichiometryMatrix", "classgridfire_1_1engine_1_1DynamicEngine.html#a5e2c45a3e415b53e41def8f743f93464", null ],
+    [ "getDepth", "classgridfire_1_1engine_1_1DynamicEngine.html#ac5a0def6b6af0bd93bf9057c25f048ff", null ],
+    [ "getNetworkReactions", "classgridfire_1_1engine_1_1DynamicEngine.html#a26b59a4c7622bf820c0eeec6a7522aa8", null ],
+    [ "getScreeningModel", "classgridfire_1_1engine_1_1DynamicEngine.html#a24103027a38e02d4342161164554d332", null ],
+    [ "getSpeciesDestructionTimescales", "classgridfire_1_1engine_1_1DynamicEngine.html#aefc5d0f7842b27a108ba1e4ca346e9a0", null ],
+    [ "getSpeciesIndex", "classgridfire_1_1engine_1_1DynamicEngine.html#ac0f40017603e8e6887b75dc7360d7c5e", null ],
+    [ "getSpeciesStatus", "classgridfire_1_1engine_1_1DynamicEngine.html#a8aebefad50c1aa34207e118e92d7ccf0", null ],
+    [ "getSpeciesTimescales", "classgridfire_1_1engine_1_1DynamicEngine.html#aef6ed91d922c0b1733fd7835e99d0efe", null ],
+    [ "getStoichiometryMatrixEntry", "classgridfire_1_1engine_1_1DynamicEngine.html#a5ce6ff370e3f0964c6b2688fb3f4bb7e", null ],
+    [ "isStale", "classgridfire_1_1engine_1_1DynamicEngine.html#a79423b9f67b4cac702547b4f1d8bd14c", null ],
+    [ "mapNetInToMolarAbundanceVector", "classgridfire_1_1engine_1_1DynamicEngine.html#aa9d55b81c1963113aad86aa60c19676f", null ],
+    [ "primeEngine", "classgridfire_1_1engine_1_1DynamicEngine.html#a70e270bb50910c0055a75575c1ef1e95", null ],
+    [ "rebuild", "classgridfire_1_1engine_1_1DynamicEngine.html#a2444b9ed3bc61920ce23c546444269e4", null ],
+    [ "setNetworkReactions", "classgridfire_1_1engine_1_1DynamicEngine.html#ab321170954bffc53b1bedaf54f6976be", null ],
+    [ "setScreeningModel", "classgridfire_1_1engine_1_1DynamicEngine.html#a50e76977d0dc3cc23d52b51842d35003", null ],
+    [ "update", "classgridfire_1_1engine_1_1DynamicEngine.html#a8dd85442ec54f20d91743c72364e36ff", null ]
+];
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1engine_1_1Engine-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::engine::Engine Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Abstract base class for a reaction network engine.  
+ <a href="classgridfire_1_1engine_1_1Engine.html#details">More...</a></p>
+
+<p><code>#include &lt;engine_abstract.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::engine::Engine:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1engine_1_1Engine__inherit__graph.svg" width="100%" height="510"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:af0ea99416c28933d364a872fc6aff556" id="r_af0ea99416c28933d364a872fc6aff556"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1Engine.html#af0ea99416c28933d364a872fc6aff556">~Engine</a> ()=default</td></tr>
+<tr class="memdesc:af0ea99416c28933d364a872fc6aff556"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:af0ea99416c28933d364a872fc6aff556"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3263c3fde2509d5d8ec4da3b6e946c48" id="r_a3263c3fde2509d5d8ec4da3b6e946c48"><td class="memItemLeft" align="right" valign="top">virtual const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1Engine.html#a3263c3fde2509d5d8ec4da3b6e946c48">getNetworkSpecies</a> () const =0</td></tr>
+<tr class="memdesc:a3263c3fde2509d5d8ec4da3b6e946c48"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the list of species in the network.  <br /></td></tr>
+<tr class="separator:a3263c3fde2509d5d8ec4da3b6e946c48"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a764fc091c72c12c8529105d7c96badb2" id="r_a764fc091c72c12c8529105d7c96badb2"><td class="memItemLeft" align="right" valign="top">virtual std::expected&lt; <a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1Engine.html#a764fc091c72c12c8529105d7c96badb2">calculateRHSAndEnergy</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const =0</td></tr>
+<tr class="memdesc:a764fc091c72c12c8529105d7c96badb2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculate the right-hand side (dY/dt) and energy generation.  <br /></td></tr>
+<tr class="separator:a764fc091c72c12c8529105d7c96badb2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Abstract base class for a reaction network engine. </p>
+<p>This class defines the minimal interface for a reaction network engine, which is responsible for evaluating the right-hand side (dY/dt) and energy generation for a given set of abundances, temperature, and density.</p>
+<p>Intended usage: Derive from this class to implement a concrete engine for a specific network or integration method.</p>
+<p>Example: </p><div class="fragment"><div class="line"><span class="keyword">class </span>MyEngine : <span class="keyword">public</span> gridfire::Engine {</div>
+<div class="line">    <span class="comment">// Implement required methods...</span></div>
+<div class="line">};</div>
+</div><!-- fragment --> </div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="af0ea99416c28933d364a872fc6aff556" name="af0ea99416c28933d364a872fc6aff556"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af0ea99416c28933d364a872fc6aff556">&#9670;&#160;</a></span>~Engine()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual gridfire::engine::Engine::~Engine </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Virtual destructor. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a764fc091c72c12c8529105d7c96badb2" name="a764fc091c72c12c8529105d7c96badb2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a764fc091c72c12c8529105d7c96badb2">&#9670;&#160;</a></span>calculateRHSAndEnergy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::expected&lt; <a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt; gridfire::engine::Engine::calculateRHSAndEnergy </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculate the right-hand side (dY/dt) and energy generation. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>expected&lt;StepDerivatives&lt;double&gt;&gt; containing either dY/dt and energy generation rate or a stale engine error indicating that the engine must be updated</dd></dl>
+<p>This function must be implemented by derived classes to compute the time derivatives of all species and the specific nuclear energy generation rate for the current state. </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#aee098a65f5cecded199d2c00422b398d">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a5de5211bc99a1995143307284be6df4a">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a82cbef591ef1aafcb9a42e01bf38fc38">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aa960005503d18066015aef280680d616">gridfire::engine::MultiscalePartitioningEngineView</a>, <a class="el" href="classPyEngine.html#abc26a86d4f93b37564d32814edbbac4d">PyEngine</a>, and <a class="el" href="classPyDynamicEngine.html#aac1f2005c0a58befc4e01627c9357924">PyDynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a3263c3fde2509d5d8ec4da3b6e946c48" name="a3263c3fde2509d5d8ec4da3b6e946c48"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3263c3fde2509d5d8ec4da3b6e946c48">&#9670;&#160;</a></span>getNetworkSpecies()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::engine::Engine::getNetworkSpecies </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get the list of species in the network. </p>
+<dl class="section return"><dt>Returns</dt><dd>Vector of Species objects representing all network species. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a8f5099bfda5f6d6e1494788beff9b7c8">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#aaa2d47f44e5bb4d9660d7c017cc5085c">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a0af3e1ac0314a485171f1dda39929cb4">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aa7aa38cf054988d050c04c59f28efdaa">gridfire::engine::MultiscalePartitioningEngineView</a>, <a class="el" href="classPyEngine.html#a2d240423899e039c2ca688e96f8af1f2">PyEngine</a>, and <a class="el" href="classPyDynamicEngine.html#afc745e7ab5da5d8b3cf916044515cd7d">PyDynamicEngine</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/engine/<a class="el" href="engine__abstract_8h.html">engine_abstract.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1engine.html">engine</a></li><li class="navelem"><a class="el" href="classgridfire_1_1engine_1_1Engine.html">Engine</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
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+var classgridfire_1_1engine_1_1Engine =
+[
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+    [ "calculateRHSAndEnergy", "classgridfire_1_1engine_1_1Engine.html#a764fc091c72c12c8529105d7c96badb2", null ],
+    [ "getNetworkSpecies", "classgridfire_1_1engine_1_1Engine.html#a3263c3fde2509d5d8ec4da3b6e946c48", null ]
+];
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+<meta name="generator" content="Doxygen 1.9.8"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
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+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<body>
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+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.9.8 -->
+<script type="text/javascript">
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+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::engine::EngineView&lt; EngineT &gt; Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1engine_1_1EngineView.html">gridfire::engine::EngineView&lt; EngineT &gt;</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a7884ea8e5618e295e64150f3ecf2c6b5">getBaseEngine</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html">gridfire::engine::EngineView&lt; EngineT &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a17d63e853d6efca31064e9147c80d497">~EngineView</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html">gridfire::engine::EngineView&lt; EngineT &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
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+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
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+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1engine_1_1EngineView-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::engine::EngineView&lt; EngineT &gt; Class Template Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Abstract base class for a "view" of a reaction network engine.  
+ <a href="classgridfire_1_1engine_1_1EngineView.html#details">More...</a></p>
+
+<p><code>#include &lt;engine_view_abstract.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a17d63e853d6efca31064e9147c80d497" id="r_a17d63e853d6efca31064e9147c80d497"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a17d63e853d6efca31064e9147c80d497">~EngineView</a> ()=default</td></tr>
+<tr class="memdesc:a17d63e853d6efca31064e9147c80d497"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:a17d63e853d6efca31064e9147c80d497"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7884ea8e5618e295e64150f3ecf2c6b5" id="r_a7884ea8e5618e295e64150f3ecf2c6b5"><td class="memItemLeft" align="right" valign="top">virtual const EngineT &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a7884ea8e5618e295e64150f3ecf2c6b5">getBaseEngine</a> () const =0</td></tr>
+<tr class="memdesc:a7884ea8e5618e295e64150f3ecf2c6b5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Access the underlying engine instance.  <br /></td></tr>
+<tr class="separator:a7884ea8e5618e295e64150f3ecf2c6b5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><div class="compoundTemplParams">template&lt;EngineType EngineT&gt;<br />
+class gridfire::engine::EngineView&lt; EngineT &gt;</div><p>Abstract base class for a "view" of a reaction network engine. </p>
+<dl class="tparams"><dt>Template Parameters</dt><dd>
+  <table class="tparams">
+    <tr><td class="paramname">EngineT</td><td>The engine type being viewed (must satisfy EngineType).</td></tr>
+  </table>
+  </dd>
+</dl>
+<p><a class="el" href="classgridfire_1_1engine_1_1EngineView.html" title="Abstract base class for a &quot;view&quot; of a reaction network engine.">EngineView</a> provides an interface for accessing an underlying engine instance, while presenting a potentially modified or reduced network structure to the user. This enables dynamic or adaptive network topologies (e.g., culling, masking, or remapping of species and reactions) without altering the core physics engine.</p>
+<p>Intended usage: Derive from this class to implement a custom view or wrapper that manages a dynamic or adaptive network structure, delegating core calculations to the base engine. The contract is that <a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a7884ea8e5618e295e64150f3ecf2c6b5" title="Access the underlying engine instance.">getBaseEngine()</a> must return a reference to the underlying engine instance, which remains responsible for the full physics.</p>
+<p>Example (see also <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html" title="An engine view that dynamically adapts the reaction network based on runtime conditions.">AdaptiveEngineView</a>): </p><div class="fragment"><div class="line"><span class="keyword">class </span>MyAdaptiveView : <span class="keyword">public</span> gridfire::EngineView&lt;DynamicEngine&gt; {</div>
+<div class="line"><span class="keyword">public</span>:</div>
+<div class="line">    MyAdaptiveView(<a class="code hl_class" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a>&amp; engine) : engine_(engine) {}</div>
+<div class="line">    <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a>&amp; getBaseEngine()<span class="keyword"> const override </span>{ <span class="keywordflow">return</span> engine_; }</div>
+<div class="line">    <span class="comment">// Implement dynamic masking/culling logic...</span></div>
+<div class="line"><span class="keyword">private</span>:</div>
+<div class="line">    DynamicEngine&amp; engine_;</div>
+<div class="line">};</div>
+<div class="ttc" id="aclassgridfire_1_1engine_1_1DynamicEngine_html"><div class="ttname"><a href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> engine_abstract.h:175</div></div>
+</div><!-- fragment --><dl class="section see"><dt>See also</dt><dd>gridfire::AdaptiveEngineView for a concrete example of dynamic culling. </dd></dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a17d63e853d6efca31064e9147c80d497" name="a17d63e853d6efca31064e9147c80d497"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a17d63e853d6efca31064e9147c80d497">&#9670;&#160;</a></span>~EngineView()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;EngineType EngineT&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="classgridfire_1_1engine_1_1EngineView.html">gridfire::engine::EngineView</a>&lt; EngineT &gt;::~<a class="el" href="classgridfire_1_1engine_1_1EngineView.html">EngineView</a> </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Virtual destructor. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a7884ea8e5618e295e64150f3ecf2c6b5" name="a7884ea8e5618e295e64150f3ecf2c6b5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7884ea8e5618e295e64150f3ecf2c6b5">&#9670;&#160;</a></span>getBaseEngine()</h2>
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+<div class="memitem">
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+<table class="mlabels">
+  <tr>
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+      <table class="memname">
+        <tr>
+          <td class="memname">virtual const EngineT &amp; <a class="el" href="classgridfire_1_1engine_1_1EngineView.html">gridfire::engine::EngineView</a>&lt; EngineT &gt;::getBaseEngine </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
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+</div><div class="memdoc">
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+<p>Access the underlying engine instance. </p>
+<dl class="section return"><dt>Returns</dt><dd>Const reference to the underlying engine.</dd></dl>
+<p>This method must be implemented by derived classes to provide access to the base engine. The returned reference should remain valid for the lifetime of the <a class="el" href="classgridfire_1_1engine_1_1EngineView.html" title="Abstract base class for a &quot;view&quot; of a reaction network engine.">EngineView</a>.</p>
+<p>Example: </p><div class="fragment"><div class="line"><span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a>&amp; engine = myView.getBaseEngine();</div>
+</div><!-- fragment --> 
+<p>Implemented in <a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a69122f748b873b872aa86350061b1b5c">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ab6f82ef31b99bfe8a6c4e475bcdb96f8">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#ad80faf5bea2153480cbfb323ed805686">gridfire::engine::MultiscalePartitioningEngineView</a>, <a class="el" href="classPyEngineView.html#aea9da2bcfdf25f3d17d007091eece206">PyEngineView</a>, and <a class="el" href="classPyDynamicEngineView.html#a9dd533670f1de47c0917a0be6b30b9ab">PyDynamicEngineView</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <div class="headertitle"><div class="title">gridfire::engine::FileDefinedEngineView Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html">gridfire::engine::FileDefinedEngineView</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a2a866a7ba9572d36efab8efe72a063f5">calculateEpsDerivatives</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a2f0ad1febc467bce87b5c6ad29b059fb">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a82cbef591ef1aafcb9a42e01bf38fc38">calculateRHSAndEnergy</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a38191e2b3b219d348eba0109dce271c3">collect</a>(const std::vector&lt; std::string &gt; &amp;peNames)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a25dc44af1a58561b665103b16abe9bbc">collectComposition</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html#a8d066e95f4cc201cbda90c2aec5d98c4">Config</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html">gridfire::engine::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a8464c50142f34583201c4abc7fbcba36">constructReactionIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a20b54c8b13616982eddb3ae3979b842d">constructSpeciesIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ada2f326789dc8ae8305617c8d700ae05">DefinedEngineView</a>(const std::vector&lt; std::string &gt; &amp;peNames, GraphEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html#a2ac3834f2d8b916db40fe71c0f070a00">FileDefinedEngineView</a>(GraphEngine &amp;baseEngine, const std::string &amp;fileName, const io::NetworkFileParser &amp;parser)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html">gridfire::engine::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a4d90439d99da61107d95319b970760bc">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a4966f8cbc859ce2a8a465516d0c0abd0">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const std::vector&lt; fourdst::atomic::Species &gt; &amp;activeSpecies) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a1de5867a0e633de0d0d96ac4fbb141e5">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#af4049e5570bd143d41cab1d4005b6824">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ab6f82ef31b99bfe8a6c4e475bcdb96f8">getBaseEngine</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ac5a0def6b6af0bd93bf9057c25f048ff">getDepth</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html#a73fc090d69db6a99d7694c1de8ff46db">getNetworkFile</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html">gridfire::engine::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a81732c1b2d08451849c1ddf833246892">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a0af3e1ac0314a485171f1dda39929cb4">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html#a6f2b445d16ea375ce00d7bd3318fed77">getParser</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html">gridfire::engine::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a413b111f6a643d7aecbae01dd0f82640">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ab051d976dbecf325747d54efe7834d04">getSpeciesDestructionTimescales</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#afb3c67ce20746b9acb2766920b8f397b">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a65af092785759559f4697c7e66bef2e3">getSpeciesStatus</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a1edda1a27247480660cf7a63410f5799">getSpeciesTimescales</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a600dd38a6011089527024f1625130935">getStoichiometryMatrixEntry</a>(const fourdst::atomic::Species &amp;species, const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a6ef3052fce2d5e4fdaec6659df64c2bc">isStale</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html#af2183aba50db8f91055042425fb84766">LogManager</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html">gridfire::engine::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ae8ac4dc44a6c9f3588d6dd02b39a4cc9">m_activeReactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#aad986ed7c9602ba042999cf0a30ed70c">m_activeSpecies</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#add093054fe3ba60f99b04f7f3bda4ba3">m_activeSpeciesVectorCache</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a1e46935f049537e675fb132564d6eacd">m_baseEngine</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html#a6a664b568caf7ec207a10be6a56e52f1">m_config</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html">gridfire::engine::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html#a94b66aa4396d98aa78900c2b6bcf0526">m_fileName</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html">gridfire::engine::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a3156dfef68cd3636f8cf7a13b5388e75">m_isStale</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html#af8e65c1eee99938437aa649675182a06">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html">gridfire::engine::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html#a3c438706106a7f1bf27f3015e2a64205">m_parser</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html">gridfire::engine::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#aa9a26262300b0982b847a72425dc373a">m_reactionIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a26af4be40216ee3ea5b7fff49fe7a00c">m_speciesIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a391bc4b5d946ea606cf7661955191d12">mapFullToView</a>(const std::vector&lt; double &gt; &amp;full) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#aa053696a7885b8e42562b2d22ee32d84">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#aa352f3ba0e689d3f81711c17f4f67dfc">mapViewToFull</a>(const std::vector&lt; double &gt; &amp;defined) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#afa9aeb6d11645e4b9cecf56fb63b51ef">mapViewToFullReactionIndex</a>(size_t definedReactionIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ad6986fa5cda1d9ed9d4f54f444f402e8">mapViewToFullSpeciesIndex</a>(size_t definedSpeciesIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a2bc32a84c9f5372587fca92f2da77595">primeEngine</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a2444b9ed3bc61920ce23c546444269e4">rebuild</a>(const fourdst::composition::CompositionAbstract &amp;comp, BuildDepthType depth)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ae89529e13f2b7fd2febcfa5af40d4666">setNetworkReactions</a>(const reaction::ReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a68bd0e51d3e127e5f9fd74fdb8180fd9">setScreeningModel</a>(screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a1d99b55bf8e94bc2397715aa1f916733">update</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a91ea88e43c17f99ff0d95a8f54b09cbf">validateNetworkState</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html#af0ea99416c28933d364a872fc6aff556">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html">gridfire::engine::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a17d63e853d6efca31064e9147c80d497">~EngineView</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html">gridfire::engine::EngineView&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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diff --git a/docs/html/classgridfire_1_1engine_1_1FileDefinedEngineView.html b/docs/html/classgridfire_1_1engine_1_1FileDefinedEngineView.html
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+<table cellspacing="0" cellpadding="0">
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+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
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+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-types">Private Types</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1engine_1_1FileDefinedEngineView-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::engine::FileDefinedEngineView Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;engine_defined.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::engine::FileDefinedEngineView:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1engine_1_1FileDefinedEngineView__inherit__graph.svg" width="408" height="300"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::engine::FileDefinedEngineView:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1engine_1_1FileDefinedEngineView__coll__graph.svg" width="100%" height="600"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a2ac3834f2d8b916db40fe71c0f070a00" id="r_a2ac3834f2d8b916db40fe71c0f070a00"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html#a2ac3834f2d8b916db40fe71c0f070a00">FileDefinedEngineView</a> (<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a> &amp;baseEngine, const std::string &amp;fileName, const <a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html">io::NetworkFileParser</a> &amp;parser)</td></tr>
+<tr class="memdesc:a2ac3834f2d8b916db40fe71c0f070a00"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html">FileDefinedEngineView</a> Implementation ///.  <br /></td></tr>
+<tr class="separator:a2ac3834f2d8b916db40fe71c0f070a00"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a73fc090d69db6a99d7694c1de8ff46db" id="r_a73fc090d69db6a99d7694c1de8ff46db"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html#a73fc090d69db6a99d7694c1de8ff46db">getNetworkFile</a> () const</td></tr>
+<tr class="separator:a73fc090d69db6a99d7694c1de8ff46db"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a6f2b445d16ea375ce00d7bd3318fed77"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1engine_1_1DefinedEngineView"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1engine_1_1DefinedEngineView')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td></tr>
+<tr class="memitem:ada2f326789dc8ae8305617c8d700ae05 inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView" id="r_ada2f326789dc8ae8305617c8d700ae05"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ada2f326789dc8ae8305617c8d700ae05">DefinedEngineView</a> (const std::vector&lt; std::string &gt; &amp;peNames, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a> &amp;baseEngine)</td></tr>
+<tr class="separator:ada2f326789dc8ae8305617c8d700ae05 inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a82cbef591ef1aafcb9a42e01bf38fc38 inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a2a866a7ba9572d36efab8efe72a063f5 inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4d90439d99da61107d95319b970760bc inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView" id="r_a4d90439d99da61107d95319b970760bc"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a4d90439d99da61107d95319b970760bc">generateJacobianMatrix</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a4d90439d99da61107d95319b970760bc inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the Jacobian matrix for the active species.  <br /></td></tr>
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+<tr class="memitem:a1de5867a0e633de0d0d96ac4fbb141e5 inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView" id="r_a1de5867a0e633de0d0d96ac4fbb141e5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a1de5867a0e633de0d0d96ac4fbb141e5">generateJacobianMatrix</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const <a class="el" href="namespacegridfire_1_1engine.html#af5175018d2d1e78a8826dd33ec6d675f">SparsityPattern</a> &amp;sparsityPattern) const override</td></tr>
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+<tr class="separator:a1de5867a0e633de0d0d96ac4fbb141e5 inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af4049e5570bd143d41cab1d4005b6824 inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView" id="r_af4049e5570bd143d41cab1d4005b6824"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#af4049e5570bd143d41cab1d4005b6824">generateStoichiometryMatrix</a> () override</td></tr>
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-types" name="pri-types"></a>
+Private Types</h2></td></tr>
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+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a6a664b568caf7ec207a10be6a56e52f1" id="r_a6a664b568caf7ec207a10be6a56e52f1"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html#a8d066e95f4cc201cbda90c2aec5d98c4">Config</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html#a6a664b568caf7ec207a10be6a56e52f1">m_config</a> = Config::getInstance()</td></tr>
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+<tr class="separator:af8e65c1eee99938437aa649675182a06"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a94b66aa4396d98aa78900c2b6bcf0526"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parser for the network file.  <br /></td></tr>
+<tr class="separator:a94b66aa4396d98aa78900c2b6bcf0526"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a3c438706106a7f1bf27f3015e2a64205"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pro_attribs_classgridfire_1_1engine_1_1DefinedEngineView"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classgridfire_1_1engine_1_1DefinedEngineView')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td></tr>
+<tr class="memitem:a3156dfef68cd3636f8cf7a13b5388e75 inherit pro_attribs_classgridfire_1_1engine_1_1DefinedEngineView" id="r_a3156dfef68cd3636f8cf7a13b5388e75"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a3156dfef68cd3636f8cf7a13b5388e75">m_isStale</a> = true</td></tr>
+<tr class="separator:a3156dfef68cd3636f8cf7a13b5388e75 inherit pro_attribs_classgridfire_1_1engine_1_1DefinedEngineView"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a1e46935f049537e675fb132564d6eacd inherit pro_attribs_classgridfire_1_1engine_1_1DefinedEngineView"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Typedef Documentation</h2>
+<a id="a8d066e95f4cc201cbda90c2aec5d98c4" name="a8d066e95f4cc201cbda90c2aec5d98c4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8d066e95f4cc201cbda90c2aec5d98c4">&#9670;&#160;</a></span>Config</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">using <a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html#a8d066e95f4cc201cbda90c2aec5d98c4">gridfire::engine::FileDefinedEngineView::Config</a> =  fourdst::config::Config</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="af2183aba50db8f91055042425fb84766" name="af2183aba50db8f91055042425fb84766"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af2183aba50db8f91055042425fb84766">&#9670;&#160;</a></span>LogManager</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">using <a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html#af2183aba50db8f91055042425fb84766">gridfire::engine::FileDefinedEngineView::LogManager</a> =  fourdst::logging::LogManager</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a2ac3834f2d8b916db40fe71c0f070a00" name="a2ac3834f2d8b916db40fe71c0f070a00"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2ac3834f2d8b916db40fe71c0f070a00">&#9670;&#160;</a></span>FileDefinedEngineView()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::engine::FileDefinedEngineView::FileDefinedEngineView </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a> &amp;&#160;</td>
+          <td class="paramname"><em>baseEngine</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>fileName</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html">io::NetworkFileParser</a> &amp;&#160;</td>
+          <td class="paramname"><em>parser</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html">FileDefinedEngineView</a> Implementation ///. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a73fc090d69db6a99d7694c1de8ff46db" name="a73fc090d69db6a99d7694c1de8ff46db"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a73fc090d69db6a99d7694c1de8ff46db">&#9670;&#160;</a></span>getNetworkFile()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::engine::FileDefinedEngineView::getNetworkFile </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a6f2b445d16ea375ce00d7bd3318fed77" name="a6f2b445d16ea375ce00d7bd3318fed77"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6f2b445d16ea375ce00d7bd3318fed77">&#9670;&#160;</a></span>getParser()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html">io::NetworkFileParser</a> &amp; gridfire::engine::FileDefinedEngineView::getParser </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a6a664b568caf7ec207a10be6a56e52f1" name="a6a664b568caf7ec207a10be6a56e52f1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6a664b568caf7ec207a10be6a56e52f1">&#9670;&#160;</a></span>m_config</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html#a8d066e95f4cc201cbda90c2aec5d98c4">Config</a>&amp; gridfire::engine::FileDefinedEngineView::m_config = Config::getInstance()</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a94b66aa4396d98aa78900c2b6bcf0526" name="a94b66aa4396d98aa78900c2b6bcf0526"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a94b66aa4396d98aa78900c2b6bcf0526">&#9670;&#160;</a></span>m_fileName</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::engine::FileDefinedEngineView::m_fileName</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Parser for the network file. </p>
+
+</div>
+</div>
+<a id="af8e65c1eee99938437aa649675182a06" name="af8e65c1eee99938437aa649675182a06"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af8e65c1eee99938437aa649675182a06">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::engine::FileDefinedEngineView::m_logger = LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a3c438706106a7f1bf27f3015e2a64205" name="a3c438706106a7f1bf27f3015e2a64205"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3c438706106a7f1bf27f3015e2a64205">&#9670;&#160;</a></span>m_parser</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html">io::NetworkFileParser</a>&amp; gridfire::engine::FileDefinedEngineView::m_parser</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/engine/views/<a class="el" href="engine__defined_8h.html">engine_defined.h</a></li>
+<li>src/lib/engine/views/<a class="el" href="engine__defined_8cpp.html">engine_defined.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1engine.html">engine</a></li><li class="navelem"><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html">FileDefinedEngineView</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
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index 00000000..1ab70434
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+var classgridfire_1_1engine_1_1FileDefinedEngineView =
+[
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+    [ "LogManager", "classgridfire_1_1engine_1_1FileDefinedEngineView.html#af2183aba50db8f91055042425fb84766", null ],
+    [ "FileDefinedEngineView", "classgridfire_1_1engine_1_1FileDefinedEngineView.html#a2ac3834f2d8b916db40fe71c0f070a00", null ],
+    [ "getNetworkFile", "classgridfire_1_1engine_1_1FileDefinedEngineView.html#a73fc090d69db6a99d7694c1de8ff46db", null ],
+    [ "getParser", "classgridfire_1_1engine_1_1FileDefinedEngineView.html#a6f2b445d16ea375ce00d7bd3318fed77", null ],
+    [ "m_config", "classgridfire_1_1engine_1_1FileDefinedEngineView.html#a6a664b568caf7ec207a10be6a56e52f1", null ],
+    [ "m_fileName", "classgridfire_1_1engine_1_1FileDefinedEngineView.html#a94b66aa4396d98aa78900c2b6bcf0526", null ],
+    [ "m_logger", "classgridfire_1_1engine_1_1FileDefinedEngineView.html#af8e65c1eee99938437aa649675182a06", null ],
+    [ "m_parser", "classgridfire_1_1engine_1_1FileDefinedEngineView.html#a3c438706106a7f1bf27f3015e2a64205", null ]
+];
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+</g>
+<!-- Node15&#45;&gt;Node14 -->
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+<!-- Node25&#45;&gt;Node24 -->
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+<!-- Node20 -->
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+<title>Node20</title>
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+<text text-anchor="start" x="483" y="-554" font-family="Helvetica,sans-Serif" font-size="10.00">std::unique_ptr&lt; gridfire</text>
+<text text-anchor="middle" x="542.5" y="-543" font-family="Helvetica,sans-Serif" font-size="10.00">::reaction::Reaction &gt;</text>
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+</g>
+<!-- Node20&#45;&gt;Node19 -->
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+<title>Node20&#45;&gt;Node19</title>
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+<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M620.01,-536.31C672.08,-526.31 740.29,-513.22 789.98,-503.68"/>
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+<title>Node21</title>
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+<text text-anchor="start" x="251" y="-803" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::reaction</text>
+<text text-anchor="middle" x="291.5" y="-792" font-family="Helvetica,sans-Serif" font-size="10.00">::Reaction</text>
+</a>
+</g>
+</g>
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+<text text-anchor="start" x="1135.5" y="-814" font-family="Helvetica,sans-Serif" font-size="10.00">std::unordered_map</text>
+<text text-anchor="start" x="1135.5" y="-803" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; std::string_view,</text>
+<text text-anchor="start" x="1135.5" y="-792" font-family="Helvetica,sans-Serif" font-size="10.00"> gridfire::reaction::</text>
+<text text-anchor="middle" x="1184.5" y="-781" font-family="Helvetica,sans-Serif" font-size="10.00">Reaction * &gt;</text>
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+</g>
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+<title>Node21&#45;&gt;Node24</title>
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+</g>
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+<text text-anchor="middle" x="1018.5" y="-1049" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_reaction</text>
+</g>
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+<title>Node22&#45;&gt;Node18</title>
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+<text text-anchor="middle" x="1018.5" y="-214" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_reactionNameMap</text>
+</g>
+<!-- Node23 -->
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+<title>Node23</title>
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+<text text-anchor="start" x="811.5" y="-283" font-family="Helvetica,sans-Serif" font-size="10.00">std::unordered_set</text>
+<text text-anchor="middle" x="857" y="-272" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; size_t &gt;</text>
+</a>
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+</g>
+<!-- Node23&#45;&gt;Node18 -->
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+<title>Node23&#45;&gt;Node18</title>
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+</g>
+<text text-anchor="middle" x="1018.5" y="-269" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_reactionHashes</text>
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+<g id="edge26_Node000006_Node000024" class="edge">
+<title>Node24&#45;&gt;Node6</title>
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+<text text-anchor="middle" x="1373" y="-794" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_reactionIDMap</text>
+</g>
+<!-- Node25 -->
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+<title>Node25</title>
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+</a>
+</g>
+</g>
+<!-- Node25&#45;&gt;Node24 -->
+<g id="edge27_Node000024_Node000025" class="edge">
+<title>Node25&#45;&gt;Node24</title>
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+<text text-anchor="middle" x="1018.5" y="-778" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> keys</text>
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+<text text-anchor="start" x="1118" y="-635.5" font-family="Helvetica,sans-Serif" font-size="10.00">std::unordered_map</text>
+<text text-anchor="start" x="1118" y="-624.5" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; std::string_view,</text>
+<text text-anchor="middle" x="1184.5" y="-613.5" font-family="Helvetica,sans-Serif" font-size="10.00"> fourdst::atomic::Species &gt;</text>
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+</g>
+</g>
+<!-- Node25&#45;&gt;Node29 -->
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+<title>Node25&#45;&gt;Node29</title>
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+<text text-anchor="start" x="488" y="-749" font-family="Helvetica,sans-Serif" font-size="10.00">std::basic_string_view</text>
+<text text-anchor="middle" x="542.5" y="-738" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; Char &gt;</text>
+</a>
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+</g>
+<!-- Node26&#45;&gt;Node25 -->
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+<title>Node26&#45;&gt;Node25</title>
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+<!-- Node27 -->
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+<text text-anchor="start" x="1135.5" y="-684" font-family="Helvetica,sans-Serif" font-size="10.00">std::vector&lt; fourdst</text>
+<text text-anchor="middle" x="1184.5" y="-673" font-family="Helvetica,sans-Serif" font-size="10.00">::atomic::Species &gt;</text>
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+</g>
+<!-- Node27&#45;&gt;Node6 -->
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+<title>Node27&#45;&gt;Node6</title>
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+</g>
+<text text-anchor="middle" x="1373" y="-669" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_networkSpecies</text>
+</g>
+<!-- Node28 -->
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+<title>Node28</title>
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+<text text-anchor="middle" x="857" y="-565.5" font-family="Helvetica,sans-Serif" font-size="10.00">Species</text>
+</a>
+</g>
+</g>
+<!-- Node28&#45;&gt;Node27 -->
+<g id="edge31_Node000027_Node000028" class="edge">
+<title>Node28&#45;&gt;Node27</title>
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+<!-- Node28&#45;&gt;Node29 -->
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+<title>Node28&#45;&gt;Node29</title>
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+<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M894.14,-574.55C945.96,-583.94 1042.54,-601.45 1109.8,-613.64"/>
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+<text text-anchor="start" x="1118" y="-576.5" font-family="Helvetica,sans-Serif" font-size="10.00">std::unordered_map</text>
+<text text-anchor="start" x="1118" y="-565.5" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; fourdst::atomic::Species,</text>
+<text text-anchor="middle" x="1184.5" y="-554.5" font-family="Helvetica,sans-Serif" font-size="10.00"> size_t &gt;</text>
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+<!-- Node28&#45;&gt;Node30 -->
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+<title>Node28&#45;&gt;Node30</title>
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+<text text-anchor="start" x="1124" y="-517.5" font-family="Helvetica,sans-Serif" font-size="10.00">std::unordered_map</text>
+<text text-anchor="start" x="1124" y="-506.5" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; size_t, fourdst::atomic</text>
+<text text-anchor="middle" x="1184.5" y="-495.5" font-family="Helvetica,sans-Serif" font-size="10.00">::Species &gt;</text>
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+</g>
+<!-- Node28&#45;&gt;Node31 -->
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+<title>Node28&#45;&gt;Node31</title>
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+<path fill="none" stroke="#9a32cd" stroke-dasharray="5,2" d="M894.1,-561.46C947.47,-551.78 1048.36,-533.5 1115.77,-521.28"/>
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+<text text-anchor="start" x="1328.5" y="-261" font-family="Helvetica,sans-Serif" font-size="10.00">std::set&lt; fourdst::</text>
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+<!-- Node28&#45;&gt;Node46 -->
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+<title>Node28&#45;&gt;Node46</title>
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+<!-- Node29&#45;&gt;Node6 -->
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+<title>Node29&#45;&gt;Node6</title>
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+</g>
+<text text-anchor="middle" x="1373" y="-630" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_networkSpeciesMap</text>
+</g>
+<!-- Node30&#45;&gt;Node6 -->
+<g id="edge35_Node000006_Node000030" class="edge">
+<title>Node30&#45;&gt;Node6</title>
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+<text text-anchor="middle" x="1373" y="-614" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_speciesToIndexMap</text>
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+<!-- Node31&#45;&gt;Node6 -->
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+<text text-anchor="middle" x="1373" y="-573" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_indexToSpeciesMap</text>
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+<title>Node32</title>
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+<text text-anchor="start" x="1136" y="-1006" font-family="Helvetica,sans-Serif" font-size="10.00">std::set&lt; std::pair</text>
+<text text-anchor="middle" x="1184.5" y="-995" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; size_t, size_t &gt; &gt;</text>
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+<text text-anchor="middle" x="1373" y="-1009" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_full_sparsity_set</text>
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+<!-- Node33 -->
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+<text text-anchor="start" x="2305" y="-672.5" font-family="Helvetica,sans-Serif" font-size="10.00">std::vector&lt; std::unique</text>
+<text text-anchor="start" x="2305" y="-661.5" font-family="Helvetica,sans-Serif" font-size="10.00">_ptr&lt; gridfire::engine</text>
+<text text-anchor="middle" x="2402" y="-650.5" font-family="Helvetica,sans-Serif" font-size="10.00">::GraphEngine::AtomicReverseRate &gt; &gt;</text>
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+<!-- Node33&#45;&gt;Node6 -->
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+<text text-anchor="middle" x="1983" y="-651" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_atomicReverseRates</text>
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+<text text-anchor="start" x="2077" y="-866.5" font-family="Helvetica,sans-Serif" font-size="10.00">::engine::GraphEngine::</text>
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+<text text-anchor="start" x="1506" y="-1092" font-family="Helvetica,sans-Serif" font-size="10.00">CppAD::atomic_base</text>
+<text text-anchor="middle" x="1557" y="-1081" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; double &gt;</text>
+</a>
+</g>
+</g>
+<!-- Node36&#45;&gt;Node35 -->
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+<text text-anchor="start" x="1110" y="-958" font-family="Helvetica,sans-Serif" font-size="10.00">std::unique_ptr&lt; gridfire</text>
+<text text-anchor="middle" x="1184.5" y="-947" font-family="Helvetica,sans-Serif" font-size="10.00">::screening::ScreeningModel &gt;</text>
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+</g>
+<!-- Node37&#45;&gt;Node6 -->
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+<title>Node37&#45;&gt;Node6</title>
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+<title>Node38</title>
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+<text text-anchor="middle" x="857" y="-947" font-family="Helvetica,sans-Serif" font-size="10.00">::ScreeningModel</text>
+</a>
+</g>
+</g>
+<!-- Node38&#45;&gt;Node37 -->
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+<text text-anchor="middle" x="1184.5" y="-721.5" font-family="Helvetica,sans-Serif" font-size="10.00">::PrecomputedReaction &gt;</text>
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+</g>
+</g>
+<!-- Node39&#45;&gt;Node6 -->
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+<text text-anchor="middle" x="1373" y="-725" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_precomputedReactions</text>
+</g>
+<!-- Node40 -->
+<g id="Node000040" class="node">
+<title>Node40</title>
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+</a>
+</g>
+</g>
+<!-- Node40&#45;&gt;Node39 -->
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+</a>
+</g>
+</g>
+<!-- Node41&#45;&gt;Node2 -->
+<g id="edge58_Node000002_Node000041" class="edge">
+<title>Node41&#45;&gt;Node2</title>
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+<text text-anchor="middle" x="1184.5" y="-118" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_reactionIndexMap</text>
+<text text-anchor="middle" x="1184.5" y="-107" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey">m_speciesIndexMap</text>
+</g>
+<!-- Node41&#45;&gt;Node40 -->
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+<title>Node41&#45;&gt;Node40</title>
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+<text text-anchor="middle" x="694" y="-498" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> affected_species_indices</text>
+<text text-anchor="middle" x="694" y="-487" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey">unique_product_indices</text>
+<text text-anchor="middle" x="694" y="-476" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey">unique_reactant_indices</text>
+</g>
+<!-- Node42 -->
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+<text text-anchor="middle" x="542.5" y="-651.5" font-family="Helvetica,sans-Serif" font-size="10.00">std::vector&lt; int &gt;</text>
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+</g>
+</g>
+<!-- Node42&#45;&gt;Node40 -->
+<g id="edge51_Node000040_Node000042" class="edge">
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+<text text-anchor="middle" x="694" y="-668" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey">reactant_powers</text>
+<text text-anchor="middle" x="694" y="-657" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey">stoichiometric_coefficients</text>
+</g>
+<!-- Node43 -->
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+<title>Node43</title>
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+<text text-anchor="start" x="1135.5" y="-862" font-family="Helvetica,sans-Serif" font-size="10.00">std::unordered_map</text>
+<text text-anchor="middle" x="1184.5" y="-851" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; uint64_t, size_t &gt;</text>
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+</g>
+</g>
+<!-- Node43&#45;&gt;Node6 -->
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+<title>Node43&#45;&gt;Node6</title>
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+<text text-anchor="middle" x="1373" y="-862" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_precomputedReactionIndexMap</text>
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+<!-- Node44 -->
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+<text text-anchor="middle" x="1184.5" y="-899" font-family="Helvetica,sans-Serif" font-size="10.00">::partition::PartitionFunction &gt;</text>
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+<!-- Node44&#45;&gt;Node6 -->
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+<title>Node44&#45;&gt;Node6</title>
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+<!-- Node45 -->
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+</g>
+</g>
+<!-- Node45&#45;&gt;Node44 -->
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+<!-- Node46&#45;&gt;Node2 -->
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+<title>Node46&#45;&gt;Node2</title>
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+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a5970c97be4c7b5b764ce1155b5c7f870">calculateAllDerivatives</a>(const std::vector&lt; T &gt; &amp;Y_in, T T9, T rho, T Ye, T mue, std::function&lt; std::optional&lt; size_t &gt;(const fourdst::atomic::Species &amp;)&gt; speciesLookup, const std::function&lt; bool(const reaction::Reaction &amp;)&gt; &amp;reactionLookup) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a23187ad3ee504de46f59e1644c715c9f">calculateAllDerivatives</a>(const std::vector&lt; T &gt; &amp;Y_in, const T T9, const T rho, const T Ye, const T mue, const std::function&lt; std::optional&lt; size_t &gt;(const fourdst::atomic::Species &amp;)&gt; speciesLookup, const std::function&lt; bool(const reaction::Reaction &amp;)&gt; &amp;reactionLookup) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#abdd3ea788cbe3448b11969c7bbe09546">calculateAllDerivativesUsingPrecomputation</a>(const fourdst::composition::CompositionAbstract &amp;comp, const std::vector&lt; double &gt; &amp;bare_rates, const std::vector&lt; double &gt; &amp;bare_reverse_rates, double T9, double rho, const reaction::ReactionSet &amp;activeReactions) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ac7e4624ed6eee72e7a8df42381d098bb">calculateEpsDerivatives</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a194b03e287ec31348583f8d2078d4906">calculateEpsDerivatives</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const reaction::ReactionSet &amp;activeReactions) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#aaff9cdc04ca01e7c927d36476bcf5da4">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#aab80f2ab29ad9c7867e75e499148aa1f">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const std::vector&lt; T &gt; &amp;Y, T T9, T rho, T Ye, T mue, const std::function&lt; std::optional&lt; size_t &gt;(const fourdst::atomic::Species &amp;)&gt; &amp;speciesIDLookup) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a2e7012382ee44473478ebc37ac36695c">calculateReverseMolarReactionFlow</a>(T T9, T rho, std::vector&lt; T &gt; screeningFactors, const std::vector&lt; T &gt; &amp;Y, size_t reactionIndex, const reaction::Reaction &amp;reaction) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a4dd5733c77e9a7ad8b5e541c187fabae">calculateReverseRate</a>(const reaction::Reaction &amp;reaction, double T9, double rho, const fourdst::composition::CompositionAbstract &amp;comp) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#aa6b07108beeab1bc75c3099c25be7833">calculateReverseRateTwoBody</a>(const reaction::Reaction &amp;reaction, double T9, double forwardRate, double expFactor) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a83ef40080c62d667b3fee71237efd2e0">calculateReverseRateTwoBodyDerivative</a>(const reaction::Reaction &amp;reaction, double T9, double rho, const fourdst::composition::Composition &amp;comp, double reverseRate) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#aee098a65f5cecded199d2c00422b398d">calculateRHSAndEnergy</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ac77d4150b3b070a095fb65346968e51b">calculateRHSAndEnergy</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const reaction::ReactionSet &amp;activeReactions) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a5fadd1bb2692e1527ce24295c77cfc72">collectAtomicReverseRateAtomicBases</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ae9d4d99c791876c012697fe5a0ba06c8">collectComposition</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a8f29c77e777fdc6517f2c7778537ba6f">collectNetworkSpecies</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a2c0c50ba51537a2f565183e2f47eef69">exportToCSV</a>(const std::string &amp;filename) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a77d9755e68c81279316c96e6bb160ee4">exportToDot</a>(const std::string &amp;filename) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a9ca013f203d7a3ef9d1b9ee4b2982cb0">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#acc28ff627d46d8d4066a1acf830cbe27">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const std::vector&lt; fourdst::atomic::Species &gt; &amp;activeSpecies) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ac4f9cd4e2304f681dd9af0f7b751cb81">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a2221feee40542efa1c07f01225bd3828">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ab29d6c4a7c789cf3d75767833c80c658">getDepth</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a663fd2bd0eda255bc242c1dc6338bc11">getNetReactionStoichiometry</a>(const reaction::Reaction &amp;reaction)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a749cc482a707cb3a38bdd5de894716e2">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a8f5099bfda5f6d6e1494788beff9b7c8">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a4247cf6a551a7cbc951a733d3c31c325">getPartitionFunction</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a62c6f3bebe931bcd412fb492deb634a5">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ae026bc87dc8b24fd78d412ac7e58b148">getSpeciesDestructionTimescales</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a0ea1eedfd79ccbd3d44241eadd65065b">getSpeciesDestructionTimescales</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const reaction::ReactionSet &amp;activeReactions) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ad67b0022cc783e63ae1954a04c4a68e1">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#afe93df16c69e7e10658c82874759dd2f">getSpeciesStatus</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a3c9b57d2842b6b5535313be845ca6175">getSpeciesTimescales</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a2f196db621e81082430be117c72fa9d0">getSpeciesTimescales</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const reaction::ReactionSet &amp;activeReactions) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#aec867f0b43e74c8157f7d5085b55bb96">getStoichiometryMatrixEntry</a>(const fourdst::atomic::Species &amp;species, const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a530a5563c5a7a76650edb1657868a289">GraphEngine</a>(const fourdst::composition::Composition &amp;composition, BuildDepthType=NetworkBuildDepth::Full)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a885887bc4ff09c810e79eb68b79e7e2a">GraphEngine</a>(const fourdst::composition::Composition &amp;composition, const partition::PartitionFunction &amp;partitionFunction, BuildDepthType buildDepth=NetworkBuildDepth::Full)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ad73fec5f24f5ee74020ca70cdaa104e3">GraphEngine</a>(const fourdst::composition::Composition &amp;composition, const partition::PartitionFunction &amp;partitionFunction, BuildDepthType buildDepth, NetworkConstructionFlags reactionTypes)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a00f8aafa14ae665d8e556b35a7934587">GraphEngine</a>(const reaction::ReactionSet &amp;reactions)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a147917aef40c3ec2751d742d3f862c70">involvesSpecies</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ad031cc7869394bd37c0bb65d86153469">isPrecomputationEnabled</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a07acc57c1015903ce3d1b0d0b7f09358">isStale</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a177a29cbdd8bae5a313cc391932a3cdd">isUsingReverseReactions</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a19305dc4affde99bb84056c9eeda9f1e">JacobianMatrixState</a> enum name</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ac02ff3a8828e281209013f5c564083d0">m_atomicReverseRates</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a903c99fc607b3e36f434ec2070c7344d">m_config</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#aab2701ed1d1262071072175647674b43">m_constants</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ae2fef545142356c7f2f2f5ae3cba6d90">m_depth</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a9087124f3e15614e76754a65d441ca08">m_epsADFun</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a636caa7f8085153424e17dc6e343a326">m_full_jacobian_sparsity_pattern</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#af68112da3edc1a8c88289b8e7242180e">m_full_sparsity_set</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#af794d0c7e7b78aebfbbf05381e3531a6">m_has_been_primed</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#aac9f28dd58bc0d40a643885c95c2ab52">m_indexToSpeciesMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a81628fd98da5681396daab00ac573c6c">m_jac_work</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a0a8d12341ecf52446faef9dd8c7dc81e">m_jacobianMatrixStateNameMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a8a121839fe3a7a35e4214fd20e753f9f">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a544299e2495c6cac339b767e932e37b3">m_networkSpecies</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a3413c72ee010534a510160e38c3b2a0c">m_networkSpeciesMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a9f0e38be889a964d0b6e62934a1220db">m_partitionFunction</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a6b4fe179421269045712cb417aa19eca">m_precomputedReactionIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a08deff0296d504a23056e6f0382dc664">m_precomputedReactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#af7dab9063bb92aac64b6dfa755074739">m_reactionIDMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a249a9237865b0cf6906b360e4cb7c1ec">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#aac2420a91b43e1a949a48768e6f3b4f2">m_rhsADFun</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a3e91570fbffc48748ad352e4554a728b">m_screeningModel</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#abdff5b7eeb73ed327ba6b758038ef776">m_screeningType</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a2421bbbdcc9fb02d9cb6e584da393c83">m_speciesToIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a1f4e11a70ce65d544e9800d552a65cc8">m_usePrecomputation</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ac9a0d4d0eec32145bf8f2b688a1d988d">m_useReverseReactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a4fd4daf4f4ef658e7c0617223a74d824">m_weakRateInterpolator</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a915602acb18a69f34076bea401ffb49d">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a6ccfb1813ce5b5c9568434f47e06726a">populateReactionIDMap</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a7e5c8d9b996e5bc7fc130d34dd196a4b">populateSpeciesToIndexMap</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ac7814b9922c7fee4c5a2649127dcdadc">precomputeNetwork</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#acc7f7fb7f0ef96135e7bda4bb532792e">primeEngine</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a6c5245a27da1b45e10fb410518b79d4e">rebuild</a>(const fourdst::composition::CompositionAbstract &amp;comp, BuildDepthType depth) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a727ae752bcf5d6266a1cf3dedacf50fa">recordADTape</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a90251650123d0d8ce0281e18c4476f45">setNetworkReactions</a>(const reaction::ReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a0e0650a14247a7f43623d58de8eedb19">setPrecomputation</a>(bool precompute)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#af842981deaf84a698b6cbfa66abcb715">setScreeningModel</a>(screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a959928abbef89fd0a20264ef8b79c111">setUseReverseReactions</a>(bool useReverse)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a9af928bf8a5327d3cb45254c0e59f914">syncInternalMaps</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a7f6d98a9a4f22f1bbc015b1cbb8198e3">update</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a87bf3a33fc21f7da2a26173ebdfa69f7">validateConservation</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">gridfire::engine::GraphEngine</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html#af0ea99416c28933d364a872fc6aff556">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html">gridfire::engine::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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diff --git a/docs/html/classgridfire_1_1engine_1_1GraphEngine.html b/docs/html/classgridfire_1_1engine_1_1GraphEngine.html
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+<title>GridFire: gridfire::engine::GraphEngine Class Reference</title>
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+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
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+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pub-static-methods">Static Public Member Functions</a> &#124;
+<a href="#pri-types">Private Types</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1engine_1_1GraphEngine-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::engine::GraphEngine Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>A reaction network engine that uses a graph-based representation.  
+ <a href="classgridfire_1_1engine_1_1GraphEngine.html#details">More...</a></p>
+
+<p><code>#include &lt;engine_graph.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::engine::GraphEngine:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1engine_1_1GraphEngine__inherit__graph.svg" width="222" height="198"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::engine::GraphEngine:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1engine_1_1GraphEngine__coll__graph.svg" width="100%" height="600"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html">AtomicReverseRate</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1GraphEngine_1_1constants.html">constants</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1GraphEngine_1_1PrecomputedReaction.html">PrecomputedReaction</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a530a5563c5a7a76650edb1657868a289" id="r_a530a5563c5a7a76650edb1657868a289"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a530a5563c5a7a76650edb1657868a289">GraphEngine</a> (const fourdst::composition::Composition &amp;composition, <a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">BuildDepthType</a>=<a class="el" href="namespacegridfire_1_1engine.html#a782fbc9eca00df10e4a204ae6da733e7abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a>)</td></tr>
+<tr class="memdesc:a530a5563c5a7a76650edb1657868a289"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html" title="A reaction network engine that uses a graph-based representation.">GraphEngine</a> from a composition.  <br /></td></tr>
+<tr class="separator:a530a5563c5a7a76650edb1657868a289"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memitem:a915602acb18a69f34076bea401ffb49d" id="r_a915602acb18a69f34076bea401ffb49d"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a915602acb18a69f34076bea401ffb49d">mapNetInToMolarAbundanceVector</a> (const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;netIn) const override</td></tr>
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+<tr class="separator:a915602acb18a69f34076bea401ffb49d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memitem:ab29d6c4a7c789cf3d75767833c80c658" id="r_ab29d6c4a7c789cf3d75767833c80c658"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">BuildDepthType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ab29d6c4a7c789cf3d75767833c80c658">getDepth</a> () const override</td></tr>
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+<tr class="memdesc:a6c5245a27da1b45e10fb410518b79d4e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Rebuilds the reaction network based on a new composition.  <br /></td></tr>
+<tr class="separator:a6c5245a27da1b45e10fb410518b79d4e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae9d4d99c791876c012697fe5a0ba06c8" id="r_ae9d4d99c791876c012697fe5a0ba06c8"><td class="memItemLeft" align="right" valign="top">fourdst::composition::Composition&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ae9d4d99c791876c012697fe5a0ba06c8">collectComposition</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:ae9d4d99c791876c012697fe5a0ba06c8"><td class="mdescLeft">&#160;</td><td class="mdescRight">This will return the input comp with the molar abundances of any species not registered in that but registered in the engine active species set to 0.0.  <br /></td></tr>
+<tr class="separator:ae9d4d99c791876c012697fe5a0ba06c8"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a23187ad3ee504de46f59e1644c715c9f"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:af0ea99416c28933d364a872fc6aff556 inherit pub_methods_classgridfire_1_1engine_1_1Engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-static-methods" name="pub-static-methods"></a>
+Static Public Member Functions</h2></td></tr>
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+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-types" name="pri-types"></a>
+Private Types</h2></td></tr>
+<tr class="memitem:a19305dc4affde99bb84056c9eeda9f1e" id="r_a19305dc4affde99bb84056c9eeda9f1e"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a19305dc4affde99bb84056c9eeda9f1e">JacobianMatrixState</a> { <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a19305dc4affde99bb84056c9eeda9f1eadd652546039b18970b8dcf2cff824268">UNINITIALIZED</a>
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+ }</td></tr>
+<tr class="separator:a19305dc4affde99bb84056c9eeda9f1e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
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+<tr class="memitem:a6ccfb1813ce5b5c9568434f47e06726a" id="r_a6ccfb1813ce5b5c9568434f47e06726a"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a6ccfb1813ce5b5c9568434f47e06726a">populateReactionIDMap</a> ()</td></tr>
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+<tr class="separator:ac02ff3a8828e281209013f5c564083d0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abdff5b7eeb73ed327ba6b758038ef776" id="r_abdff5b7eeb73ed327ba6b758038ef776"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#abdff5b7eeb73ed327ba6b758038ef776">m_screeningType</a> = <a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25ad80b95b1abb9c8659fa4cc9d3d29bb71">screening::ScreeningType::BARE</a></td></tr>
+<tr class="memdesc:abdff5b7eeb73ed327ba6b758038ef776"><td class="mdescLeft">&#160;</td><td class="mdescRight">Screening type for the reaction network. Default to no screening.  <br /></td></tr>
+<tr class="separator:abdff5b7eeb73ed327ba6b758038ef776"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3e91570fbffc48748ad352e4554a728b" id="r_a3e91570fbffc48748ad352e4554a728b"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">screening::ScreeningModel</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a3e91570fbffc48748ad352e4554a728b">m_screeningModel</a> = <a class="el" href="namespacegridfire_1_1screening.html#a6ca8556d27ac373e176f5b23437c416e">screening::selectScreeningModel</a>(<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#abdff5b7eeb73ed327ba6b758038ef776">m_screeningType</a>)</td></tr>
+<tr class="separator:a3e91570fbffc48748ad352e4554a728b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1f4e11a70ce65d544e9800d552a65cc8" id="r_a1f4e11a70ce65d544e9800d552a65cc8"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a1f4e11a70ce65d544e9800d552a65cc8">m_usePrecomputation</a> = true</td></tr>
+<tr class="memdesc:a1f4e11a70ce65d544e9800d552a65cc8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Flag to enable or disable using precomputed reactions for efficiency. Mathematically, this should not change the results. Generally end users should not need to change this.  <br /></td></tr>
+<tr class="separator:a1f4e11a70ce65d544e9800d552a65cc8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac9a0d4d0eec32145bf8f2b688a1d988d" id="r_ac9a0d4d0eec32145bf8f2b688a1d988d"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ac9a0d4d0eec32145bf8f2b688a1d988d">m_useReverseReactions</a> = true</td></tr>
+<tr class="memdesc:ac9a0d4d0eec32145bf8f2b688a1d988d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Flag to enable or disable reverse reactions. If false, only forward reactions are considered.  <br /></td></tr>
+<tr class="separator:ac9a0d4d0eec32145bf8f2b688a1d988d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae2fef545142356c7f2f2f5ae3cba6d90" id="r_ae2fef545142356c7f2f2f5ae3cba6d90"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">BuildDepthType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ae2fef545142356c7f2f2f5ae3cba6d90">m_depth</a></td></tr>
+<tr class="separator:ae2fef545142356c7f2f2f5ae3cba6d90"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a08deff0296d504a23056e6f0382dc664" id="r_a08deff0296d504a23056e6f0382dc664"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="structgridfire_1_1engine_1_1GraphEngine_1_1PrecomputedReaction.html">PrecomputedReaction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a08deff0296d504a23056e6f0382dc664">m_precomputedReactions</a></td></tr>
+<tr class="memdesc:a08deff0296d504a23056e6f0382dc664"><td class="mdescLeft">&#160;</td><td class="mdescRight">Precomputed reactions for efficiency.  <br /></td></tr>
+<tr class="separator:a08deff0296d504a23056e6f0382dc664"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6b4fe179421269045712cb417aa19eca" id="r_a6b4fe179421269045712cb417aa19eca"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; uint64_t, size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a6b4fe179421269045712cb417aa19eca">m_precomputedReactionIndexMap</a></td></tr>
+<tr class="memdesc:a6b4fe179421269045712cb417aa19eca"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of hashed precomputed reactions for quick lookup.  <br /></td></tr>
+<tr class="separator:a6b4fe179421269045712cb417aa19eca"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9f0e38be889a964d0b6e62934a1220db" id="r_a9f0e38be889a964d0b6e62934a1220db"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">partition::PartitionFunction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a9f0e38be889a964d0b6e62934a1220db">m_partitionFunction</a></td></tr>
+<tr class="memdesc:a9f0e38be889a964d0b6e62934a1220db"><td class="mdescLeft">&#160;</td><td class="mdescRight">Partition function for the network.  <br /></td></tr>
+<tr class="separator:a9f0e38be889a964d0b6e62934a1220db"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>A reaction network engine that uses a graph-based representation. </p>
+<p>The <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html" title="A reaction network engine that uses a graph-based representation.">GraphEngine</a> class implements the <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> interface using a graph-based representation of the reaction network. It uses sparse matrices for efficient storage and computation of the stoichiometry and Jacobian matrices. Automatic differentiation (AD) is used to calculate the Jacobian matrix.</p>
+<p>The engine supports:</p><ul>
+<li>Calculation of the right-hand side (dY/dt) and energy generation rate.</li>
+<li>Generation and access to the Jacobian matrix.</li>
+<li>Generation and access to the stoichiometry matrix.</li>
+<li>Calculation of molar reaction flows.</li>
+<li>Access to the set of logical reactions in the network.</li>
+<li>Computation of timescales for each species.</li>
+<li>Exporting the network to DOT and CSV formats for visualization and analysis.</li>
+</ul>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="engine__abstract_8h.html" title="Abstract interfaces for reaction network engines in GridFire.">engine_abstract.h</a> </dd></dl>
+</div><h2 class="groupheader">Member Enumeration Documentation</h2>
+<a id="a19305dc4affde99bb84056c9eeda9f1e" name="a19305dc4affde99bb84056c9eeda9f1e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a19305dc4affde99bb84056c9eeda9f1e">&#9670;&#160;</a></span>JacobianMatrixState</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">enum class <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a19305dc4affde99bb84056c9eeda9f1e">gridfire::engine::GraphEngine::JacobianMatrixState</a></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">strong</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<table class="fieldtable">
+<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><a id="a19305dc4affde99bb84056c9eeda9f1eadd652546039b18970b8dcf2cff824268" name="a19305dc4affde99bb84056c9eeda9f1eadd652546039b18970b8dcf2cff824268"></a>UNINITIALIZED&#160;</td><td class="fielddoc"></td></tr>
+<tr><td class="fieldname"><a id="a19305dc4affde99bb84056c9eeda9f1ea4d855a061b3066dc14a3b12ed26b5456" name="a19305dc4affde99bb84056c9eeda9f1ea4d855a061b3066dc14a3b12ed26b5456"></a>STALE&#160;</td><td class="fielddoc"></td></tr>
+<tr><td class="fieldname"><a id="a19305dc4affde99bb84056c9eeda9f1ea162cb379760275c9685281ee27025cdb" name="a19305dc4affde99bb84056c9eeda9f1ea162cb379760275c9685281ee27025cdb"></a>READY_DENSE&#160;</td><td class="fielddoc"></td></tr>
+<tr><td class="fieldname"><a id="a19305dc4affde99bb84056c9eeda9f1eabf43af1b1ac8bc6cb42296815a429ae3" name="a19305dc4affde99bb84056c9eeda9f1eabf43af1b1ac8bc6cb42296815a429ae3"></a>READY_SPARSE&#160;</td><td class="fielddoc"></td></tr>
+</table>
+
+</div>
+</div>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a530a5563c5a7a76650edb1657868a289" name="a530a5563c5a7a76650edb1657868a289"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a530a5563c5a7a76650edb1657868a289">&#9670;&#160;</a></span>GraphEngine() <span class="overload">[1/4]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::engine::GraphEngine::GraphEngine </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>composition</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">BuildDepthType</a>&#160;</td>
+          <td class="paramname"><em>buildDepth</em> = <code><a class="el" href="namespacegridfire_1_1engine.html#a782fbc9eca00df10e4a204ae6da733e7abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a></code>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructs a <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html" title="A reaction network engine that uses a graph-based representation.">GraphEngine</a> from a composition. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">composition</td><td>The composition of the material.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This constructor builds the reaction network from the given composition using the <code>build_reaclib_nuclear_network</code> function.</p>
+<dl class="section see"><dt>See also</dt><dd>build_reaclib_nuclear_network </dd></dl>
+
+</div>
+</div>
+<a id="a885887bc4ff09c810e79eb68b79e7e2a" name="a885887bc4ff09c810e79eb68b79e7e2a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a885887bc4ff09c810e79eb68b79e7e2a">&#9670;&#160;</a></span>GraphEngine() <span class="overload">[2/4]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::engine::GraphEngine::GraphEngine </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>composition</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">partition::PartitionFunction</a> &amp;&#160;</td>
+          <td class="paramname"><em>partitionFunction</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">BuildDepthType</a>&#160;</td>
+          <td class="paramname"><em>buildDepth</em> = <code><a class="el" href="namespacegridfire_1_1engine.html#a782fbc9eca00df10e4a204ae6da733e7abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a></code>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ad73fec5f24f5ee74020ca70cdaa104e3" name="ad73fec5f24f5ee74020ca70cdaa104e3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad73fec5f24f5ee74020ca70cdaa104e3">&#9670;&#160;</a></span>GraphEngine() <span class="overload">[3/4]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::engine::GraphEngine::GraphEngine </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>composition</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">partition::PartitionFunction</a> &amp;&#160;</td>
+          <td class="paramname"><em>partitionFunction</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">BuildDepthType</a>&#160;</td>
+          <td class="paramname"><em>buildDepth</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a>&#160;</td>
+          <td class="paramname"><em>reactionTypes</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a00f8aafa14ae665d8e556b35a7934587" name="a00f8aafa14ae665d8e556b35a7934587"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a00f8aafa14ae665d8e556b35a7934587">&#9670;&#160;</a></span>GraphEngine() <span class="overload">[4/4]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::engine::GraphEngine::GraphEngine </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructs a <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html" title="A reaction network engine that uses a graph-based representation.">GraphEngine</a> from a set of reactions. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of reactions to use in the network.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This constructor uses the given set of reactions to construct the reaction network. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a23187ad3ee504de46f59e1644c715c9f" name="a23187ad3ee504de46f59e1644c715c9f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a23187ad3ee504de46f59e1644c715c9f">&#9670;&#160;</a></span>calculateAllDerivatives() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;IsArithmeticOrAD T&gt; </div>
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">StepDerivatives</a>&lt; T &gt; gridfire::engine::GraphEngine::calculateAllDerivatives </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; T &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y_in</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const T&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const T&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const T&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const T&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::function&lt; std::optional&lt; size_t &gt;(const fourdst::atomic::Species &amp;)&gt;&#160;</td>
+          <td class="paramname"><em>speciesLookup</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::function&lt; bool(const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;)&gt; &amp;&#160;</td>
+          <td class="paramname"><em>reactionLookup</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a5970c97be4c7b5b764ce1155b5c7f870" name="a5970c97be4c7b5b764ce1155b5c7f870"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5970c97be4c7b5b764ce1155b5c7f870">&#9670;&#160;</a></span>calculateAllDerivatives() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;IsArithmeticOrAD T&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">StepDerivatives</a>&lt; T &gt; gridfire::engine::GraphEngine::calculateAllDerivatives </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; T &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y_in</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">std::function&lt; std::optional&lt; size_t &gt;(const fourdst::atomic::Species &amp;)&gt;&#160;</td>
+          <td class="paramname"><em>speciesLookup</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::function&lt; bool(const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;)&gt; &amp;&#160;</td>
+          <td class="paramname"><em>reactionLookup</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates all derivatives (dY/dt) and the energy generation rate. </p>
+<dl class="tparams"><dt>Template Parameters</dt><dd>
+  <table class="tparams">
+    <tr><td class="paramname">T</td><td>The numeric type to use for the calculation. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">Y_in</td><td>Vector of molar abundances for all species in the network. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+    <tr><td class="paramname">Ye</td><td></td></tr>
+    <tr><td class="paramname">mue</td><td></td></tr>
+    <tr><td class="paramname">speciesLookup</td><td></td></tr>
+    <tr><td class="paramname">reactionLookup</td><td></td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>StepDerivatives&lt;T&gt; containing dY/dt and energy generation rate.</dd></dl>
+<p>This method calculates the time derivatives of all species and the specific nuclear energy generation rate for the current state. </p>
+
+</div>
+</div>
+<a id="abdd3ea788cbe3448b11969c7bbe09546" name="abdd3ea788cbe3448b11969c7bbe09546"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abdd3ea788cbe3448b11969c7bbe09546">&#9670;&#160;</a></span>calculateAllDerivativesUsingPrecomputation()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">StepDerivatives</a>&lt; double &gt; gridfire::engine::GraphEngine::calculateAllDerivativesUsingPrecomputation </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>bare_rates</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>bare_reverse_rates</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>activeReactions</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ac7e4624ed6eee72e7a8df42381d098bb" name="ac7e4624ed6eee72e7a8df42381d098bb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac7e4624ed6eee72e7a8df42381d098bb">&#9670;&#160;</a></span>calculateEpsDerivatives() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html">EnergyDerivatives</a> gridfire::engine::GraphEngine::calculateEpsDerivatives </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the derivatives of the energy generation rate with respect to temperature and density. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html" title="Structure holding derivatives of energy generation rate with respect to T and rho.">EnergyDerivatives</a> struct containing the derivatives.</dd></dl>
+<p>This method computes the partial derivatives of the specific nuclear energy generation rate with respect to temperature (∂ε/∂T) and density (∂ε/∂ρ)</p>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html" title="Structure holding derivatives of energy generation rate with respect to T and rho.">EnergyDerivatives</a> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ada6a1295a92c2aede841672ecae0cede">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a194b03e287ec31348583f8d2078d4906" name="a194b03e287ec31348583f8d2078d4906"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a194b03e287ec31348583f8d2078d4906">&#9670;&#160;</a></span>calculateEpsDerivatives() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html">EnergyDerivatives</a> gridfire::engine::GraphEngine::calculateEpsDerivatives </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>activeReactions</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Calculates the derivatives of the energy generation rate with respect to temperature and density for a subset of reactions. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+    <tr><td class="paramname">activeReactions</td><td>The set of reactions to include in the calculation. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html" title="Structure holding derivatives of energy generation rate with respect to T and rho.">EnergyDerivatives</a> struct containing the derivatives.</dd></dl>
+<p>This method computes the partial derivatives of the specific nuclear energy generation rate with respect to temperature (∂ε/∂T) and density (∂ε/∂ρ) considering only the specified subset of reactions. This allows for flexible calculations with different reaction sets without modifying the engine's internal state.</p>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html" title="Structure holding derivatives of energy generation rate with respect to T and rho.">EnergyDerivatives</a> </dd></dl>
+
+</div>
+</div>
+<a id="aaff9cdc04ca01e7c927d36476bcf5da4" name="aaff9cdc04ca01e7c927d36476bcf5da4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaff9cdc04ca01e7c927d36476bcf5da4">&#9670;&#160;</a></span>calculateMolarReactionFlow() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::engine::GraphEngine::calculateMolarReactionFlow </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the molar reaction flow for a given reaction. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The reaction for which to calculate the flow. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Molar flow rate for the reaction (e.g., mol/g/s).</dd></dl>
+<p>This method computes the net rate at which the given reaction proceeds under the current state. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aa57fa5e58b98a03fba31bcddda8001d4">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="aab80f2ab29ad9c7867e75e499148aa1f" name="aab80f2ab29ad9c7867e75e499148aa1f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aab80f2ab29ad9c7867e75e499148aa1f">&#9670;&#160;</a></span>calculateMolarReactionFlow() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;IsArithmeticOrAD T&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">T gridfire::engine::GraphEngine::calculateMolarReactionFlow </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; T &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::function&lt; std::optional&lt; size_t &gt;(const fourdst::atomic::Species &amp;)&gt; &amp;&#160;</td>
+          <td class="paramname"><em>speciesIDLookup</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the molar reaction flow for a given reaction. </p>
+<dl class="tparams"><dt>Template Parameters</dt><dd>
+  <table class="tparams">
+    <tr><td class="paramname">T</td><td>The numeric type to use for the calculation. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The reaction for which to calculate the flow. </td></tr>
+    <tr><td class="paramname">Y</td><td>Vector of molar abundances for all species in the network. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+    <tr><td class="paramname">Ye</td><td></td></tr>
+    <tr><td class="paramname">mue</td><td></td></tr>
+    <tr><td class="paramname">speciesIDLookup</td><td></td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Molar flow rate for the reaction (e.g., mol/g/s).</dd></dl>
+<p>This method computes the net rate at which the given reaction proceeds under the current state. </p>
+
+</div>
+</div>
+<a id="a2e7012382ee44473478ebc37ac36695c" name="a2e7012382ee44473478ebc37ac36695c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2e7012382ee44473478ebc37ac36695c">&#9670;&#160;</a></span>calculateReverseMolarReactionFlow()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;IsArithmeticOrAD T&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">T gridfire::engine::GraphEngine::calculateReverseMolarReactionFlow </td>
+          <td>(</td>
+          <td class="paramtype">T&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">std::vector&lt; T &gt;&#160;</td>
+          <td class="paramname"><em>screeningFactors</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; T &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>reactionIndex</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a4dd5733c77e9a7ad8b5e541c187fabae" name="a4dd5733c77e9a7ad8b5e541c187fabae"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4dd5733c77e9a7ad8b5e541c187fabae">&#9670;&#160;</a></span>calculateReverseRate()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::engine::GraphEngine::calculateReverseRate </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Calculates the reverse rate for a given reaction. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The reaction for which to calculate the reverse rate. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td></td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Reverse rate for the reaction (e.g., mol/g/s).</dd></dl>
+<p>This method computes the reverse rate based on the forward rate and thermodynamic properties of the reaction. </p>
+
+</div>
+</div>
+<a id="aa6b07108beeab1bc75c3099c25be7833" name="aa6b07108beeab1bc75c3099c25be7833"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa6b07108beeab1bc75c3099c25be7833">&#9670;&#160;</a></span>calculateReverseRateTwoBody()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::engine::GraphEngine::calculateReverseRateTwoBody </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>forwardRate</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>expFactor</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Calculates the reverse rate for a two-body reaction. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The reaction for which to calculate the reverse rate. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">forwardRate</td><td>The forward rate of the reaction. </td></tr>
+    <tr><td class="paramname">expFactor</td><td>Exponential factor for the reaction. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Reverse rate for the two-body reaction (e.g., mol/g/s).</dd></dl>
+<p>This method computes the reverse rate using the forward rate and thermodynamic properties of the reaction. </p>
+
+</div>
+</div>
+<a id="a83ef40080c62d667b3fee71237efd2e0" name="a83ef40080c62d667b3fee71237efd2e0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a83ef40080c62d667b3fee71237efd2e0">&#9670;&#160;</a></span>calculateReverseRateTwoBodyDerivative()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::engine::GraphEngine::calculateReverseRateTwoBodyDerivative </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>reverseRate</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Calculates the derivative of the reverse rate for a two-body reaction with respect to temperature. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The reaction for which to calculate the derivative. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">reverseRate</td><td>The reverse rate of the reaction. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Derivative of the reverse rate with respect to temperature.</dd></dl>
+<p>This method computes the derivative of the reverse rate using automatic differentiation. </p>
+
+</div>
+</div>
+<a id="aee098a65f5cecded199d2c00422b398d" name="aee098a65f5cecded199d2c00422b398d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aee098a65f5cecded199d2c00422b398d">&#9670;&#160;</a></span>calculateRHSAndEnergy() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; <a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt; gridfire::engine::GraphEngine::calculateRHSAndEnergy </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the right-hand side (dY/dt) and energy generation rate. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>StepDerivatives&lt;double&gt; containing dY/dt and energy generation rate.</dd></dl>
+<p>This method calculates the time derivatives of all species and the specific nuclear energy generation rate for the current state.</p>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html" title="Structure holding derivatives and energy generation for a network step.">StepDerivatives</a> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1Engine.html#a764fc091c72c12c8529105d7c96badb2">gridfire::engine::Engine</a>.</p>
+
+</div>
+</div>
+<a id="ac77d4150b3b070a095fb65346968e51b" name="ac77d4150b3b070a095fb65346968e51b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac77d4150b3b070a095fb65346968e51b">&#9670;&#160;</a></span>calculateRHSAndEnergy() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; <a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt; gridfire::engine::GraphEngine::calculateRHSAndEnergy </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>activeReactions</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Calculates the right-hand side (dY/dt) and energy generation rate for a subset of reactions. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+    <tr><td class="paramname">activeReactions</td><td>The set of reactions to include in the calculation. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>StepDerivatives&lt;double&gt; containing dY/dt and energy generation rate.</dd></dl>
+<p>This method calculates the time derivatives of all species and the specific nuclear energy generation rate considering only the specified subset of reactions. This allows for flexible calculations with different reaction sets without modifying the engine's internal state.</p>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html" title="Structure holding derivatives and energy generation for a network step.">StepDerivatives</a> </dd></dl>
+
+</div>
+</div>
+<a id="a5fadd1bb2692e1527ce24295c77cfc72" name="a5fadd1bb2692e1527ce24295c77cfc72"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5fadd1bb2692e1527ce24295c77cfc72">&#9670;&#160;</a></span>collectAtomicReverseRateAtomicBases()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::GraphEngine::collectAtomicReverseRateAtomicBases </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae9d4d99c791876c012697fe5a0ba06c8" name="ae9d4d99c791876c012697fe5a0ba06c8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae9d4d99c791876c012697fe5a0ba06c8">&#9670;&#160;</a></span>collectComposition()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::composition::Composition gridfire::engine::GraphEngine::collectComposition </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>This will return the input comp with the molar abundances of any species not registered in that but registered in the engine active species set to 0.0. </p>
+<dl class="section note"><dt>Note</dt><dd>Effectively this method does not change input composition; rather it ensures that all species which can be tracked by an instance of <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html" title="A reaction network engine that uses a graph-based representation.">GraphEngine</a> are registered in the composition object. </dd>
+<dd>
+If a species is in the input comp but not in the network </dd></dl>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Input Composition </td></tr>
+    <tr><td class="paramname">T9</td><td></td></tr>
+    <tr><td class="paramname">rho</td><td></td></tr>
+    <tr><td class="paramname">T9</td><td></td></tr>
+    <tr><td class="paramname">rho</td><td></td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A new composition where all members of the active species set are registered. And any members not in comp have a molar abundance set to 0. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">BadCollectionError</td><td>If the input composition contains species not present in the network species set </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a41877719ae5e8de53c1692c7cf9bfbfc">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a8f29c77e777fdc6517f2c7778537ba6f" name="a8f29c77e777fdc6517f2c7778537ba6f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8f29c77e777fdc6517f2c7778537ba6f">&#9670;&#160;</a></span>collectNetworkSpecies()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::GraphEngine::collectNetworkSpecies </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Collects the unique species in the network. </p>
+<p>This method collects the unique species in the network from the reactants and products of all reactions. </p>
+
+</div>
+</div>
+<a id="a2c0c50ba51537a2f565183e2f47eef69" name="a2c0c50ba51537a2f565183e2f47eef69"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2c0c50ba51537a2f565183e2f47eef69">&#9670;&#160;</a></span>exportToCSV()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::GraphEngine::exportToCSV </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>filename</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Exports the network to a CSV file for analysis. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">filename</td><td>The name of the CSV file to create.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method generates a CSV file containing information about the reactions in the network, including the reactants, products, Q-value, and reaction rate coefficients.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the file cannot be opened for writing.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>Example usage: </p><div class="fragment"><div class="line">engine.exportToCSV(<span class="stringliteral">&quot;network.csv&quot;</span>);</div>
+</div><!-- fragment --> 
+</div>
+</div>
+<a id="a77d9755e68c81279316c96e6bb160ee4" name="a77d9755e68c81279316c96e6bb160ee4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a77d9755e68c81279316c96e6bb160ee4">&#9670;&#160;</a></span>exportToDot()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::GraphEngine::exportToDot </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>filename</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Exports the network to a DOT file for visualization. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">filename</td><td>The name of the DOT file to create.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method generates a DOT file that can be used to visualize the reaction network as a graph. The DOT file can be converted to a graphical image using Graphviz.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the file cannot be opened for writing.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>Example usage: </p><div class="fragment"><div class="line">engine.exportToDot(<span class="stringliteral">&quot;network.dot&quot;</span>);</div>
+</div><!-- fragment --> 
+</div>
+</div>
+<a id="a9ca013f203d7a3ef9d1b9ee4b2982cb0" name="a9ca013f203d7a3ef9d1b9ee4b2982cb0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9ca013f203d7a3ef9d1b9ee4b2982cb0">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[1/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> gridfire::engine::GraphEngine::generateJacobianMatrix </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generates the Jacobian matrix for the current state. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method computes and stores the Jacobian matrix (∂(dY/dt)_i/∂Y_j) for the current state using automatic differentiation. The matrix can then be accessed via <code>getJacobianMatrixEntry()</code>.</p>
+<dl class="section see"><dt>See also</dt><dd>getJacobianMatrixEntry() </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a53276f09346b531f8676db355e1219eb">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="ac4f9cd4e2304f681dd9af0f7b751cb81" name="ac4f9cd4e2304f681dd9af0f7b751cb81"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac4f9cd4e2304f681dd9af0f7b751cb81">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[2/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> gridfire::engine::GraphEngine::generateJacobianMatrix </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1engine.html#af5175018d2d1e78a8826dd33ec6d675f">SparsityPattern</a> &amp;&#160;</td>
+          <td class="paramname"><em>sparsityPattern</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generates the Jacobian matrix for the current state with a specified sparsity pattern. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+    <tr><td class="paramname">sparsityPattern</td><td>The sparsity pattern to use for the Jacobian matrix.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method computes and stores the Jacobian matrix (∂(dY/dt)_i/∂Y_j) for the current state using automatic differentiation, taking into account the provided sparsity pattern. The matrix can then be accessed via <code>getJacobianMatrixEntry()</code>.</p>
+<dl class="section see"><dt>See also</dt><dd>getJacobianMatrixEntry() </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a51d55a21be28e372021b2b8e5ecdc551">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="acc28ff627d46d8d4066a1acf830cbe27" name="acc28ff627d46d8d4066a1acf830cbe27"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acc28ff627d46d8d4066a1acf830cbe27">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[3/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> gridfire::engine::GraphEngine::generateJacobianMatrix </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>activeSpecies</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generates the Jacobian matrix for the current state with a specified set of active species. generally this will be much faster than the full matrix generation. Here we use forward mode to generate the Jacobian only for the active species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The density in g/cm^3. </td></tr>
+    <tr><td class="paramname">activeSpecies</td><td>A vector of Species objects representing the active species.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section see"><dt>See also</dt><dd>getJacobianMatrixEntry() </dd>
+<dd>
+<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a9ca013f203d7a3ef9d1b9ee4b2982cb0" title="Generates the Jacobian matrix for the current state.">generateJacobianMatrix()</a> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a15d53dac8b622a3b7d0f928a3995dbde">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a2221feee40542efa1c07f01225bd3828" name="a2221feee40542efa1c07f01225bd3828"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2221feee40542efa1c07f01225bd3828">&#9670;&#160;</a></span>generateStoichiometryMatrix()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::GraphEngine::generateStoichiometryMatrix </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generates the stoichiometry matrix for the network. </p>
+<p>This method computes and stores the stoichiometry matrix, which encodes the net change of each species in each reaction. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a5e2c45a3e415b53e41def8f743f93464">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="ab29d6c4a7c789cf3d75767833c80c658" name="ab29d6c4a7c789cf3d75767833c80c658"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab29d6c4a7c789cf3d75767833c80c658">&#9670;&#160;</a></span>getDepth()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">BuildDepthType</a> gridfire::engine::GraphEngine::getDepth </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the depth of the network. </p>
+<dl class="section return"><dt>Returns</dt><dd>The build depth of the network.</dd></dl>
+<p>This method returns the current build depth of the reaction network, which indicates how many levels of reactions are included in the network. </p>
+
+<p>Reimplemented from <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ac5a0def6b6af0bd93bf9057c25f048ff">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a663fd2bd0eda255bc242c1dc6338bc11" name="a663fd2bd0eda255bc242c1dc6338bc11"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a663fd2bd0eda255bc242c1dc6338bc11">&#9670;&#160;</a></span>getNetReactionStoichiometry()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt; fourdst::atomic::Species, int &gt; gridfire::engine::GraphEngine::getNetReactionStoichiometry </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the net stoichiometry for a given reaction. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The reaction for which to get the stoichiometry. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Map of species to their stoichiometric coefficients. </dd></dl>
+
+</div>
+</div>
+<a id="a749cc482a707cb3a38bdd5de894716e2" name="a749cc482a707cb3a38bdd5de894716e2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a749cc482a707cb3a38bdd5de894716e2">&#9670;&#160;</a></span>getNetworkReactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp; gridfire::engine::GraphEngine::getNetworkReactions </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the set of logical reactions in the network. </p>
+<dl class="section return"><dt>Returns</dt><dd>Reference to the LogicalReactionSet containing all reactions. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a26b59a4c7622bf820c0eeec6a7522aa8">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a8f5099bfda5f6d6e1494788beff9b7c8" name="a8f5099bfda5f6d6e1494788beff9b7c8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8f5099bfda5f6d6e1494788beff9b7c8">&#9670;&#160;</a></span>getNetworkSpecies()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::engine::GraphEngine::getNetworkSpecies </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the list of species in the network. </p>
+<dl class="section return"><dt>Returns</dt><dd>Vector of Species objects representing all network species. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1Engine.html#a3263c3fde2509d5d8ec4da3b6e946c48">gridfire::engine::Engine</a>.</p>
+
+</div>
+</div>
+<a id="a4247cf6a551a7cbc951a733d3c31c325" name="a4247cf6a551a7cbc951a733d3c31c325"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4247cf6a551a7cbc951a733d3c31c325">&#9670;&#160;</a></span>getPartitionFunction()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">partition::PartitionFunction</a> &amp; gridfire::engine::GraphEngine::getPartitionFunction </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Gets the partition function used for reaction rate calculations. </p>
+<dl class="section return"><dt>Returns</dt><dd>Reference to the PartitionFunction object.</dd></dl>
+<p>This method provides access to the partition function used in the engine, which is essential for calculating thermodynamic properties and reaction rates. </p>
+
+</div>
+</div>
+<a id="a62c6f3bebe931bcd412fb492deb634a5" name="a62c6f3bebe931bcd412fb492deb634a5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a62c6f3bebe931bcd412fb492deb634a5">&#9670;&#160;</a></span>getScreeningModel()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a> gridfire::engine::GraphEngine::getScreeningModel </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the current electron screening model. </p>
+<dl class="section return"><dt>Returns</dt><dd>The currently active screening model type.</dd></dl>
+<p>Example usage: </p><div class="fragment"><div class="line"><a class="code hl_enumeration" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a> currentModel = engine.getScreeningModel();</div>
+<div class="ttc" id="anamespacegridfire_1_1screening_html_aa82aafbc4f8c28d0a75b60798e3a7d25"><div class="ttname"><a href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">gridfire::screening::ScreeningType</a></div><div class="ttdeci">ScreeningType</div><div class="ttdoc">Enumerates the available plasma screening models.</div><div class="ttdef"><b>Definition</b> screening_types.h:15</div></div>
+</div><!-- fragment --> 
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a24103027a38e02d4342161164554d332">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="ae026bc87dc8b24fd78d412ac7e58b148" name="ae026bc87dc8b24fd78d412ac7e58b148"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae026bc87dc8b24fd78d412ac7e58b148">&#9670;&#160;</a></span>getSpeciesDestructionTimescales() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt; gridfire::engine::GraphEngine::getSpeciesDestructionTimescales </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Computes destruction timescales for all species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Map from Species to their destruction timescales (s).</dd></dl>
+<p>This method estimates the destruction timescale for each species, which can be useful for understanding reaction flows and equilibrium states. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aefc5d0f7842b27a108ba1e4ca346e9a0">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a0ea1eedfd79ccbd3d44241eadd65065b" name="a0ea1eedfd79ccbd3d44241eadd65065b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0ea1eedfd79ccbd3d44241eadd65065b">&#9670;&#160;</a></span>getSpeciesDestructionTimescales() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt; gridfire::engine::GraphEngine::getSpeciesDestructionTimescales </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>activeReactions</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Computes destruction timescales for all species in the network considering a subset of reactions. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+    <tr><td class="paramname">activeReactions</td><td>The set of reactions to include in the calculation. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Map from Species to their destruction timescales (s).</dd></dl>
+<p>This method estimates the destruction timescale for each species, considering only the specified subset of reactions. This allows for flexible calculations with different reaction sets without modifying the engine's internal state. </p>
+
+</div>
+</div>
+<a id="ad67b0022cc783e63ae1954a04c4a68e1" name="ad67b0022cc783e63ae1954a04c4a68e1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad67b0022cc783e63ae1954a04c4a68e1">&#9670;&#160;</a></span>getSpeciesIndex()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::engine::GraphEngine::getSpeciesIndex </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the index of a species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species for which to get the index. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Index of the species in the network, or -1 if not found.</dd></dl>
+<p>This method returns the index of the given species in the network's species vector. If the species is not found, it returns -1. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ac0f40017603e8e6887b75dc7360d7c5e">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="afe93df16c69e7e10658c82874759dd2f" name="afe93df16c69e7e10658c82874759dd2f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afe93df16c69e7e10658c82874759dd2f">&#9670;&#160;</a></span>getSpeciesStatus()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1engine.html#a83c9d755597668bba3cf00cd0ea10ee3">SpeciesStatus</a> gridfire::engine::GraphEngine::getSpeciesStatus </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the status of a species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species for which to get the status. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>SpeciesStatus indicating the status of the species.</dd></dl>
+<p>This method checks if the given species is part of the network and returns its status (e.g., Active, Inactive, NotFound). </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a8aebefad50c1aa34207e118e92d7ccf0">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a3c9b57d2842b6b5535313be845ca6175" name="a3c9b57d2842b6b5535313be845ca6175"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3c9b57d2842b6b5535313be845ca6175">&#9670;&#160;</a></span>getSpeciesTimescales() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt; gridfire::engine::GraphEngine::getSpeciesTimescales </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Computes timescales for all species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Map from Species to their characteristic timescales (s).</dd></dl>
+<p>This method estimates the timescale for abundance change of each species, which can be used for timestep control or diagnostics. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aef6ed91d922c0b1733fd7835e99d0efe">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a2f196db621e81082430be117c72fa9d0" name="a2f196db621e81082430be117c72fa9d0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2f196db621e81082430be117c72fa9d0">&#9670;&#160;</a></span>getSpeciesTimescales() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; std::unordered_map&lt; fourdst::atomic::Species, double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt; gridfire::engine::GraphEngine::getSpeciesTimescales </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>activeReactions</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Computes timescales for all species in the network considering a subset of reactions. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Composition object containing current abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+    <tr><td class="paramname">activeReactions</td><td>The set of reactions to include in the calculation. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Map from Species to their characteristic timescales (s).</dd></dl>
+<p>This method estimates the timescale for abundance change of each species, considering only the specified subset of reactions. This allows for flexible calculations with different reaction sets without modifying the engine's internal state. </p>
+
+</div>
+</div>
+<a id="aec867f0b43e74c8157f7d5085b55bb96" name="aec867f0b43e74c8157f7d5085b55bb96"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aec867f0b43e74c8157f7d5085b55bb96">&#9670;&#160;</a></span>getStoichiometryMatrixEntry()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::engine::GraphEngine::getStoichiometryMatrixEntry </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets an entry from the stoichiometry matrix. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>Species to look up stoichiometry for. </td></tr>
+    <tr><td class="paramname">reaction</td><td>Reaction to find. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Stoichiometric coefficient for the species in the reaction.</dd></dl>
+<p>The stoichiometry matrix must have been generated by <code><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a2221feee40542efa1c07f01225bd3828" title="Generates the stoichiometry matrix for the network.">generateStoichiometryMatrix()</a></code>.</p>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a2221feee40542efa1c07f01225bd3828" title="Generates the stoichiometry matrix for the network.">generateStoichiometryMatrix()</a> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a5ce6ff370e3f0964c6b2688fb3f4bb7e">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a147917aef40c3ec2751d742d3f862c70" name="a147917aef40c3ec2751d742d3f862c70"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a147917aef40c3ec2751d742d3f862c70">&#9670;&#160;</a></span>involvesSpecies()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::GraphEngine::involvesSpecies </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Checks if a given species is involved in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to check. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the species is involved in the network, false otherwise. </dd></dl>
+
+</div>
+</div>
+<a id="ad031cc7869394bd37c0bb65d86153469" name="ad031cc7869394bd37c0bb65d86153469"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad031cc7869394bd37c0bb65d86153469">&#9670;&#160;</a></span>isPrecomputationEnabled()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::GraphEngine::isPrecomputationEnabled </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Checks if precomputation of reaction rates is enabled. </p>
+<dl class="section return"><dt>Returns</dt><dd>True if precomputation is enabled, false otherwise.</dd></dl>
+<p>This method allows checking the current state of precomputation for reaction rates in the engine. </p>
+
+</div>
+</div>
+<a id="a07acc57c1015903ce3d1b0d0b7f09358" name="a07acc57c1015903ce3d1b0d0b7f09358"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a07acc57c1015903ce3d1b0d0b7f09358">&#9670;&#160;</a></span>isStale()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::GraphEngine::isStale </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Checks if the engine view is stale and needs to be updated. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>The current network input (unused). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the view is stale, false otherwise.</dd></dl>
+<dl class="deprecated"><dt><b><a class="el" href="deprecated.html#_deprecated000001">Deprecated:</a></b></dt><dd>This method is deprecated and will be removed in future versions. Stale states are returned as part of the results of methods that require the ability to report them. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a79423b9f67b4cac702547b4f1d8bd14c">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a177a29cbdd8bae5a313cc391932a3cdd" name="a177a29cbdd8bae5a313cc391932a3cdd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a177a29cbdd8bae5a313cc391932a3cdd">&#9670;&#160;</a></span>isUsingReverseReactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::GraphEngine::isUsingReverseReactions </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Checks if reverse reactions are enabled. </p>
+<dl class="section return"><dt>Returns</dt><dd>True if reverse reactions are enabled, false otherwise.</dd></dl>
+<p>This method allows checking whether the engine is configured to use reverse reactions in its calculations. </p>
+
+</div>
+</div>
+<a id="a915602acb18a69f34076bea401ffb49d" name="a915602acb18a69f34076bea401ffb49d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a915602acb18a69f34076bea401ffb49d">&#9670;&#160;</a></span>mapNetInToMolarAbundanceVector()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; double &gt; gridfire::engine::GraphEngine::mapNetInToMolarAbundanceVector </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Maps the <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> object to a vector of molar abundances. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>The <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> object containing the input conditions. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Vector of molar abundances corresponding to the species in the network.</dd></dl>
+<p>This method converts the <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> object into a vector of molar abundances for each species in the network, which can be used for further calculations. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aa9d55b81c1963113aad86aa60c19676f">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a6ccfb1813ce5b5c9568434f47e06726a" name="a6ccfb1813ce5b5c9568434f47e06726a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6ccfb1813ce5b5c9568434f47e06726a">&#9670;&#160;</a></span>populateReactionIDMap()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::GraphEngine::populateReactionIDMap </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Populates the reaction ID map. </p>
+<p>This method populates the reaction ID map, which maps reaction IDs to REACLIBReaction objects. </p>
+
+</div>
+</div>
+<a id="a7e5c8d9b996e5bc7fc130d34dd196a4b" name="a7e5c8d9b996e5bc7fc130d34dd196a4b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7e5c8d9b996e5bc7fc130d34dd196a4b">&#9670;&#160;</a></span>populateSpeciesToIndexMap()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::GraphEngine::populateSpeciesToIndexMap </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Populates the species-to-index map. </p>
+<p>This method populates the species-to-index map, which maps species to their index in the stoichiometry matrix. </p>
+
+</div>
+</div>
+<a id="ac7814b9922c7fee4c5a2649127dcdadc" name="ac7814b9922c7fee4c5a2649127dcdadc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac7814b9922c7fee4c5a2649127dcdadc">&#9670;&#160;</a></span>precomputeNetwork()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::GraphEngine::precomputeNetwork </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="acc7f7fb7f0ef96135e7bda4bb532792e" name="acc7f7fb7f0ef96135e7bda4bb532792e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acc7f7fb7f0ef96135e7bda4bb532792e">&#9670;&#160;</a></span>primeEngine()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html">PrimingReport</a> gridfire::engine::GraphEngine::primeEngine </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Prepares the engine for calculations with initial conditions. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>The input conditions for the network. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html" title="Captures the result of a network priming operation.">PrimingReport</a> containing information about the priming process.</dd></dl>
+<p>This method initializes the engine with the provided input conditions, setting up reactions, species, and precomputing necessary data. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a70e270bb50910c0055a75575c1ef1e95">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a6c5245a27da1b45e10fb410518b79d4e" name="a6c5245a27da1b45e10fb410518b79d4e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6c5245a27da1b45e10fb410518b79d4e">&#9670;&#160;</a></span>rebuild()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::GraphEngine::rebuild </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">BuildDepthType</a>&#160;</td>
+          <td class="paramname"><em>depth</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Rebuilds the reaction network based on a new composition. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The new composition to use for rebuilding the network. </td></tr>
+    <tr><td class="paramname">depth</td><td>The build depth to use for the network.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method rebuilds the reaction network using the provided composition and build depth. It updates all internal data structures accordingly. </p>
+
+<p>Reimplemented from <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a2444b9ed3bc61920ce23c546444269e4">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a727ae752bcf5d6266a1cf3dedacf50fa" name="a727ae752bcf5d6266a1cf3dedacf50fa"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a727ae752bcf5d6266a1cf3dedacf50fa">&#9670;&#160;</a></span>recordADTape()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::GraphEngine::recordADTape </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Records the AD tape for the right-hand side of the ODE. </p>
+<p>This method records the AD tape for the right-hand side of the ODE, which is used to calculate the Jacobian matrix using automatic differentiation.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If there are no species in the network. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a90251650123d0d8ce0281e18c4476f45" name="a90251650123d0d8ce0281e18c4476f45"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a90251650123d0d8ce0281e18c4476f45">&#9670;&#160;</a></span>setNetworkReactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::GraphEngine::setNetworkReactions </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Sets the reactions for the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of reactions to use in the network.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method replaces the current set of reactions in the network with the provided set. It marks the engine as stale, requiring regeneration of matrices and recalculation of rates. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ab321170954bffc53b1bedaf54f6976be">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a0e0650a14247a7f43623d58de8eedb19" name="a0e0650a14247a7f43623d58de8eedb19"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0e0650a14247a7f43623d58de8eedb19">&#9670;&#160;</a></span>setPrecomputation()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::GraphEngine::setPrecomputation </td>
+          <td>(</td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>precompute</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Sets whether to precompute reaction rates. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">precompute</td><td>True to enable precomputation, false to disable.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method allows enabling or disabling precomputation of reaction rates for performance optimization. When enabled, reaction rates are computed once and stored for later use.</p>
+<dl class="section post"><dt>Postcondition</dt><dd>If precomputation is enabled, reaction rates will be precomputed and cached. If disabled, reaction rates will be computed on-the-fly as needed. </dd></dl>
+
+</div>
+</div>
+<a id="af842981deaf84a698b6cbfa66abcb715" name="af842981deaf84a698b6cbfa66abcb715"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af842981deaf84a698b6cbfa66abcb715">&#9670;&#160;</a></span>setScreeningModel()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::GraphEngine::setScreeningModel </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a>&#160;</td>
+          <td class="paramname"><em>model</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Sets the electron screening model for reaction rate calculations. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">model</td><td>The type of screening model to use.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method allows changing the screening model at runtime. Screening corrections account for the electrostatic shielding of nuclei by electrons, which affects reaction rates in dense stellar plasmas. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a50e76977d0dc3cc23d52b51842d35003">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a959928abbef89fd0a20264ef8b79c111" name="a959928abbef89fd0a20264ef8b79c111"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a959928abbef89fd0a20264ef8b79c111">&#9670;&#160;</a></span>setUseReverseReactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::GraphEngine::setUseReverseReactions </td>
+          <td>(</td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>useReverse</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Sets whether to use reverse reactions in the engine. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">useReverse</td><td>True to enable reverse reactions, false to disable.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This method allows enabling or disabling reverse reactions in the engine. If disabled, only forward reactions will be considered in calculations.</p>
+<dl class="section post"><dt>Postcondition</dt><dd>If reverse reactions are enabled, the engine will consider both forward and reverse reactions in its calculations. If disabled, only forward reactions will be considered. </dd></dl>
+
+</div>
+</div>
+<a id="a9af928bf8a5327d3cb45254c0e59f914" name="a9af928bf8a5327d3cb45254c0e59f914"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9af928bf8a5327d3cb45254c0e59f914">&#9670;&#160;</a></span>syncInternalMaps()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::GraphEngine::syncInternalMaps </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Synchronizes the internal maps. </p>
+<p>This method synchronizes the internal maps used by the engine, including the species map, reaction ID map, and species-to-index map. It also generates the stoichiometry matrix and records the AD tape. </p>
+
+</div>
+</div>
+<a id="a7f6d98a9a4f22f1bbc015b1cbb8198e3" name="a7f6d98a9a4f22f1bbc015b1cbb8198e3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7f6d98a9a4f22f1bbc015b1cbb8198e3">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::composition::Composition gridfire::engine::GraphEngine::update </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Updates the state of the network and the composition to be usable for the current network. </p>
+<p>For graph engine all this does is ensure that the returned composition has all the species in the network registered. if a species was already in the composition is will keep its abundance, otherwise it will be added with zero abundance.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>The input netIn to use, this includes the composition, temperature, and density</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The updated composition that includes all species in the network. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a8dd85442ec54f20d91743c72364e36ff">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a87bf3a33fc21f7da2a26173ebdfa69f7" name="a87bf3a33fc21f7da2a26173ebdfa69f7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a87bf3a33fc21f7da2a26173ebdfa69f7">&#9670;&#160;</a></span>validateConservation()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::GraphEngine::validateConservation </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Validates mass and charge conservation across all reactions. </p>
+<dl class="section return"><dt>Returns</dt><dd>True if all reactions conserve mass and charge, false otherwise.</dd></dl>
+<p>This method checks that all reactions in the network conserve mass and charge. If any reaction does not conserve mass or charge, an error message is logged and false is returned. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="ac02ff3a8828e281209013f5c564083d0" name="ac02ff3a8828e281209013f5c564083d0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac02ff3a8828e281209013f5c564083d0">&#9670;&#160;</a></span>m_atomicReverseRates</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;std::unique_ptr&lt;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html">AtomicReverseRate</a>&gt; &gt; gridfire::engine::GraphEngine::m_atomicReverseRates</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a903c99fc607b3e36f434ec2070c7344d" name="a903c99fc607b3e36f434ec2070c7344d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a903c99fc607b3e36f434ec2070c7344d">&#9670;&#160;</a></span>m_config</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">Config&amp; gridfire::engine::GraphEngine::m_config = Config::getInstance()</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aab2701ed1d1262071072175647674b43" name="aab2701ed1d1262071072175647674b43"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aab2701ed1d1262071072175647674b43">&#9670;&#160;</a></span>m_constants</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1engine_1_1GraphEngine_1_1constants.html">constants</a> gridfire::engine::GraphEngine::m_constants</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae2fef545142356c7f2f2f5ae3cba6d90" name="ae2fef545142356c7f2f2f5ae3cba6d90"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae2fef545142356c7f2f2f5ae3cba6d90">&#9670;&#160;</a></span>m_depth</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">BuildDepthType</a> gridfire::engine::GraphEngine::m_depth</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a9087124f3e15614e76754a65d441ca08" name="a9087124f3e15614e76754a65d441ca08"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9087124f3e15614e76754a65d441ca08">&#9670;&#160;</a></span>m_epsADFun</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">CppAD::ADFun&lt;double&gt; gridfire::engine::GraphEngine::m_epsADFun</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>CppAD function for the energy generation rate. </p>
+
+</div>
+</div>
+<a id="a636caa7f8085153424e17dc6e343a326" name="a636caa7f8085153424e17dc6e343a326"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a636caa7f8085153424e17dc6e343a326">&#9670;&#160;</a></span>m_full_jacobian_sparsity_pattern</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">CppAD::sparse_rc&lt;std::vector&lt;size_t&gt; &gt; gridfire::engine::GraphEngine::m_full_jacobian_sparsity_pattern</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Full sparsity pattern for the Jacobian matrix. </p>
+
+</div>
+</div>
+<a id="af68112da3edc1a8c88289b8e7242180e" name="af68112da3edc1a8c88289b8e7242180e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af68112da3edc1a8c88289b8e7242180e">&#9670;&#160;</a></span>m_full_sparsity_set</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::set&lt;std::pair&lt;size_t, size_t&gt; &gt; gridfire::engine::GraphEngine::m_full_sparsity_set</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>For quick lookups of the base sparsity pattern. </p>
+
+</div>
+</div>
+<a id="af794d0c7e7b78aebfbbf05381e3531a6" name="af794d0c7e7b78aebfbbf05381e3531a6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af794d0c7e7b78aebfbbf05381e3531a6">&#9670;&#160;</a></span>m_has_been_primed</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::GraphEngine::m_has_been_primed = false</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Flag indicating if the engine has been primed. </p>
+
+</div>
+</div>
+<a id="aac9f28dd58bc0d40a643885c95c2ab52" name="aac9f28dd58bc0d40a643885c95c2ab52"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aac9f28dd58bc0d40a643885c95c2ab52">&#9670;&#160;</a></span>m_indexToSpeciesMap</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;size_t, fourdst::atomic::Species&gt; gridfire::engine::GraphEngine::m_indexToSpeciesMap</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Map from index to species in the stoichiometry matrix. </p>
+
+</div>
+</div>
+<a id="a81628fd98da5681396daab00ac573c6c" name="a81628fd98da5681396daab00ac573c6c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a81628fd98da5681396daab00ac573c6c">&#9670;&#160;</a></span>m_jac_work</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">CppAD::sparse_jac_work gridfire::engine::GraphEngine::m_jac_work</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Work object for sparse Jacobian calculations. </p>
+
+</div>
+</div>
+<a id="a0a8d12341ecf52446faef9dd8c7dc81e" name="a0a8d12341ecf52446faef9dd8c7dc81e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0a8d12341ecf52446faef9dd8c7dc81e">&#9670;&#160;</a></span>m_jacobianMatrixStateNameMap</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a19305dc4affde99bb84056c9eeda9f1e">JacobianMatrixState</a>, std::string&gt; gridfire::engine::GraphEngine::m_jacobianMatrixStateNameMap</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<b>Initial value:</b><div class="fragment"><div class="line">= {</div>
+<div class="line">            {<a class="code hl_enumvalue" href="classgridfire_1_1engine_1_1GraphEngine.html#a19305dc4affde99bb84056c9eeda9f1eadd652546039b18970b8dcf2cff824268">JacobianMatrixState::UNINITIALIZED</a>, <span class="stringliteral">&quot;Uninitialized&quot;</span>},</div>
+<div class="line">            {<a class="code hl_enumvalue" href="classgridfire_1_1engine_1_1GraphEngine.html#a19305dc4affde99bb84056c9eeda9f1ea4d855a061b3066dc14a3b12ed26b5456">JacobianMatrixState::STALE</a>, <span class="stringliteral">&quot;Stale&quot;</span>},</div>
+<div class="line">            {<a class="code hl_enumvalue" href="classgridfire_1_1engine_1_1GraphEngine.html#a19305dc4affde99bb84056c9eeda9f1ea162cb379760275c9685281ee27025cdb">JacobianMatrixState::READY_DENSE</a>, <span class="stringliteral">&quot;Ready (dense)&quot;</span>},</div>
+<div class="line">            {<a class="code hl_enumvalue" href="classgridfire_1_1engine_1_1GraphEngine.html#a19305dc4affde99bb84056c9eeda9f1eabf43af1b1ac8bc6cb42296815a429ae3">JacobianMatrixState::READY_SPARSE</a>, <span class="stringliteral">&quot;Ready (sparse)&quot;</span>},</div>
+<div class="line">        }</div>
+<div class="ttc" id="aclassgridfire_1_1engine_1_1GraphEngine_html_a19305dc4affde99bb84056c9eeda9f1ea162cb379760275c9685281ee27025cdb"><div class="ttname"><a href="classgridfire_1_1engine_1_1GraphEngine.html#a19305dc4affde99bb84056c9eeda9f1ea162cb379760275c9685281ee27025cdb">gridfire::engine::GraphEngine::JacobianMatrixState::READY_DENSE</a></div><div class="ttdeci">@ READY_DENSE</div></div>
+<div class="ttc" id="aclassgridfire_1_1engine_1_1GraphEngine_html_a19305dc4affde99bb84056c9eeda9f1ea4d855a061b3066dc14a3b12ed26b5456"><div class="ttname"><a href="classgridfire_1_1engine_1_1GraphEngine.html#a19305dc4affde99bb84056c9eeda9f1ea4d855a061b3066dc14a3b12ed26b5456">gridfire::engine::GraphEngine::JacobianMatrixState::STALE</a></div><div class="ttdeci">@ STALE</div></div>
+<div class="ttc" id="aclassgridfire_1_1engine_1_1GraphEngine_html_a19305dc4affde99bb84056c9eeda9f1eabf43af1b1ac8bc6cb42296815a429ae3"><div class="ttname"><a href="classgridfire_1_1engine_1_1GraphEngine.html#a19305dc4affde99bb84056c9eeda9f1eabf43af1b1ac8bc6cb42296815a429ae3">gridfire::engine::GraphEngine::JacobianMatrixState::READY_SPARSE</a></div><div class="ttdeci">@ READY_SPARSE</div></div>
+<div class="ttc" id="aclassgridfire_1_1engine_1_1GraphEngine_html_a19305dc4affde99bb84056c9eeda9f1eadd652546039b18970b8dcf2cff824268"><div class="ttname"><a href="classgridfire_1_1engine_1_1GraphEngine.html#a19305dc4affde99bb84056c9eeda9f1eadd652546039b18970b8dcf2cff824268">gridfire::engine::GraphEngine::JacobianMatrixState::UNINITIALIZED</a></div><div class="ttdeci">@ UNINITIALIZED</div></div>
+</div><!-- fragment -->
+</div>
+</div>
+<a id="a8a121839fe3a7a35e4214fd20e753f9f" name="a8a121839fe3a7a35e4214fd20e753f9f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8a121839fe3a7a35e4214fd20e753f9f">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::engine::GraphEngine::m_logger = LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a544299e2495c6cac339b767e932e37b3" name="a544299e2495c6cac339b767e932e37b3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a544299e2495c6cac339b767e932e37b3">&#9670;&#160;</a></span>m_networkSpecies</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;fourdst::atomic::Species&gt; gridfire::engine::GraphEngine::m_networkSpecies</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Vector of unique species in the network. </p>
+
+</div>
+</div>
+<a id="a3413c72ee010534a510160e38c3b2a0c" name="a3413c72ee010534a510160e38c3b2a0c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3413c72ee010534a510160e38c3b2a0c">&#9670;&#160;</a></span>m_networkSpeciesMap</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;std::string_view, fourdst::atomic::Species&gt; gridfire::engine::GraphEngine::m_networkSpeciesMap</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Map from species name to Species object. </p>
+
+</div>
+</div>
+<a id="a9f0e38be889a964d0b6e62934a1220db" name="a9f0e38be889a964d0b6e62934a1220db"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9f0e38be889a964d0b6e62934a1220db">&#9670;&#160;</a></span>m_partitionFunction</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt;<a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">partition::PartitionFunction</a>&gt; gridfire::engine::GraphEngine::m_partitionFunction</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Partition function for the network. </p>
+
+</div>
+</div>
+<a id="a6b4fe179421269045712cb417aa19eca" name="a6b4fe179421269045712cb417aa19eca"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6b4fe179421269045712cb417aa19eca">&#9670;&#160;</a></span>m_precomputedReactionIndexMap</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;uint64_t, size_t&gt; gridfire::engine::GraphEngine::m_precomputedReactionIndexMap</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Set of hashed precomputed reactions for quick lookup. </p>
+
+</div>
+</div>
+<a id="a08deff0296d504a23056e6f0382dc664" name="a08deff0296d504a23056e6f0382dc664"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a08deff0296d504a23056e6f0382dc664">&#9670;&#160;</a></span>m_precomputedReactions</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;<a class="el" href="structgridfire_1_1engine_1_1GraphEngine_1_1PrecomputedReaction.html">PrecomputedReaction</a>&gt; gridfire::engine::GraphEngine::m_precomputedReactions</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Precomputed reactions for efficiency. </p>
+
+</div>
+</div>
+<a id="af7dab9063bb92aac64b6dfa755074739" name="af7dab9063bb92aac64b6dfa755074739"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af7dab9063bb92aac64b6dfa755074739">&#9670;&#160;</a></span>m_reactionIDMap</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;std::string_view, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a>*&gt; gridfire::engine::GraphEngine::m_reactionIDMap</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Map from reaction ID to REACLIBReaction. //PERF: This makes copies of REACLIBReaction and could be a performance bottleneck. </p>
+
+</div>
+</div>
+<a id="a249a9237865b0cf6906b360e4cb7c1ec" name="a249a9237865b0cf6906b360e4cb7c1ec"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a249a9237865b0cf6906b360e4cb7c1ec">&#9670;&#160;</a></span>m_reactions</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> gridfire::engine::GraphEngine::m_reactions</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Set of REACLIB reactions in the network. </p>
+
+</div>
+</div>
+<a id="aac2420a91b43e1a949a48768e6f3b4f2" name="aac2420a91b43e1a949a48768e6f3b4f2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aac2420a91b43e1a949a48768e6f3b4f2">&#9670;&#160;</a></span>m_rhsADFun</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">CppAD::ADFun&lt;double&gt; gridfire::engine::GraphEngine::m_rhsADFun</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>CppAD function for the right-hand side of the ODE. </p>
+
+</div>
+</div>
+<a id="a3e91570fbffc48748ad352e4554a728b" name="a3e91570fbffc48748ad352e4554a728b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3e91570fbffc48748ad352e4554a728b">&#9670;&#160;</a></span>m_screeningModel</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt;<a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">screening::ScreeningModel</a>&gt; gridfire::engine::GraphEngine::m_screeningModel = <a class="el" href="namespacegridfire_1_1screening.html#a6ca8556d27ac373e176f5b23437c416e">screening::selectScreeningModel</a>(<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#abdff5b7eeb73ed327ba6b758038ef776">m_screeningType</a>)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="abdff5b7eeb73ed327ba6b758038ef776" name="abdff5b7eeb73ed327ba6b758038ef776"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abdff5b7eeb73ed327ba6b758038ef776">&#9670;&#160;</a></span>m_screeningType</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a> gridfire::engine::GraphEngine::m_screeningType = <a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25ad80b95b1abb9c8659fa4cc9d3d29bb71">screening::ScreeningType::BARE</a></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Screening type for the reaction network. Default to no screening. </p>
+
+</div>
+</div>
+<a id="a2421bbbdcc9fb02d9cb6e584da393c83" name="a2421bbbdcc9fb02d9cb6e584da393c83"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2421bbbdcc9fb02d9cb6e584da393c83">&#9670;&#160;</a></span>m_speciesToIndexMap</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;fourdst::atomic::Species, size_t&gt; gridfire::engine::GraphEngine::m_speciesToIndexMap</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Map from species to their index in the stoichiometry matrix. </p>
+
+</div>
+</div>
+<a id="a1f4e11a70ce65d544e9800d552a65cc8" name="a1f4e11a70ce65d544e9800d552a65cc8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1f4e11a70ce65d544e9800d552a65cc8">&#9670;&#160;</a></span>m_usePrecomputation</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::GraphEngine::m_usePrecomputation = true</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Flag to enable or disable using precomputed reactions for efficiency. Mathematically, this should not change the results. Generally end users should not need to change this. </p>
+
+</div>
+</div>
+<a id="ac9a0d4d0eec32145bf8f2b688a1d988d" name="ac9a0d4d0eec32145bf8f2b688a1d988d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac9a0d4d0eec32145bf8f2b688a1d988d">&#9670;&#160;</a></span>m_useReverseReactions</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::GraphEngine::m_useReverseReactions = true</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Flag to enable or disable reverse reactions. If false, only forward reactions are considered. </p>
+
+</div>
+</div>
+<a id="a4fd4daf4f4ef658e7c0617223a74d824" name="a4fd4daf4f4ef658e7c0617223a74d824"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4fd4daf4f4ef658e7c0617223a74d824">&#9670;&#160;</a></span>m_weakRateInterpolator</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">rates::weak::WeakRateInterpolator</a> gridfire::engine::GraphEngine::m_weakRateInterpolator</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Interpolator for weak reaction rates. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/engine/<a class="el" href="engine__graph_8h.html">engine_graph.h</a></li>
+<li>src/lib/engine/<a class="el" href="engine__graph_8cpp.html">engine_graph.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1engine.html">engine</a></li><li class="navelem"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
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new file mode 100644
index 00000000..c54d21fa
--- /dev/null
+++ b/docs/html/classgridfire_1_1engine_1_1GraphEngine.js
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+var classgridfire_1_1engine_1_1GraphEngine =
+[
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+    [ "JacobianMatrixState", "classgridfire_1_1engine_1_1GraphEngine.html#a19305dc4affde99bb84056c9eeda9f1e", [
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+    [ "GraphEngine", "classgridfire_1_1engine_1_1GraphEngine.html#ad73fec5f24f5ee74020ca70cdaa104e3", null ],
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+    [ "calculateAllDerivatives", "classgridfire_1_1engine_1_1GraphEngine.html#a23187ad3ee504de46f59e1644c715c9f", null ],
+    [ "calculateAllDerivatives", "classgridfire_1_1engine_1_1GraphEngine.html#a5970c97be4c7b5b764ce1155b5c7f870", null ],
+    [ "calculateAllDerivativesUsingPrecomputation", "classgridfire_1_1engine_1_1GraphEngine.html#abdd3ea788cbe3448b11969c7bbe09546", null ],
+    [ "calculateEpsDerivatives", "classgridfire_1_1engine_1_1GraphEngine.html#ac7e4624ed6eee72e7a8df42381d098bb", null ],
+    [ "calculateEpsDerivatives", "classgridfire_1_1engine_1_1GraphEngine.html#a194b03e287ec31348583f8d2078d4906", null ],
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+    [ "calculateMolarReactionFlow", "classgridfire_1_1engine_1_1GraphEngine.html#aab80f2ab29ad9c7867e75e499148aa1f", null ],
+    [ "calculateReverseMolarReactionFlow", "classgridfire_1_1engine_1_1GraphEngine.html#a2e7012382ee44473478ebc37ac36695c", null ],
+    [ "calculateReverseRate", "classgridfire_1_1engine_1_1GraphEngine.html#a4dd5733c77e9a7ad8b5e541c187fabae", null ],
+    [ "calculateReverseRateTwoBody", "classgridfire_1_1engine_1_1GraphEngine.html#aa6b07108beeab1bc75c3099c25be7833", null ],
+    [ "calculateReverseRateTwoBodyDerivative", "classgridfire_1_1engine_1_1GraphEngine.html#a83ef40080c62d667b3fee71237efd2e0", null ],
+    [ "calculateRHSAndEnergy", "classgridfire_1_1engine_1_1GraphEngine.html#aee098a65f5cecded199d2c00422b398d", null ],
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+    [ "populateSpeciesToIndexMap", "classgridfire_1_1engine_1_1GraphEngine.html#a7e5c8d9b996e5bc7fc130d34dd196a4b", null ],
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new file mode 100644
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+<meta name="generator" content="Doxygen 1.9.8"/>
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+<title>GridFire: Member List</title>
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::engine::GraphEngine::AtomicReverseRate Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html">gridfire::engine::GraphEngine::AtomicReverseRate</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#a29639c336e8a6786ec2edea98915c0a4">AtomicReverseRate</a>(const reaction::Reaction &amp;reaction, const GraphEngine &amp;engine)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html">gridfire::engine::GraphEngine::AtomicReverseRate</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#a706c7a9a7c74333bb77a99c1ada8dc65">for_sparse_jac</a>(size_t q, const CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;r, CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;s) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html">gridfire::engine::GraphEngine::AtomicReverseRate</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#a2726876d934a53364e205dbc00a17cc9">for_sparse_jac</a>(size_t q, const CppAD::vector&lt; bool &gt; &amp;r, CppAD::vector&lt; bool &gt; &amp;s, const CppAD::vector&lt; double &gt; &amp;x) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html">gridfire::engine::GraphEngine::AtomicReverseRate</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#a9bd23c85ea5e8ad14a0175931852640d">forward</a>(size_t p, size_t q, const CppAD::vector&lt; bool &gt; &amp;vx, CppAD::vector&lt; bool &gt; &amp;vy, const CppAD::vector&lt; double &gt; &amp;tx, CppAD::vector&lt; double &gt; &amp;ty) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html">gridfire::engine::GraphEngine::AtomicReverseRate</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#ac4e9b5a30752c13dcf872a1eeec3734c">m_engine</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html">gridfire::engine::GraphEngine::AtomicReverseRate</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#a826f3f139f3767c72828990cd40dd415">m_reaction</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html">gridfire::engine::GraphEngine::AtomicReverseRate</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#af5b5eff42682cf278fa4559e50c47eed">rev_sparse_jac</a>(size_t q, const CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;rt, CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;st) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html">gridfire::engine::GraphEngine::AtomicReverseRate</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#abaa48f3861797a4721ab8841424854d3">rev_sparse_jac</a>(size_t q, const CppAD::vector&lt; bool &gt; &amp;rt, CppAD::vector&lt; bool &gt; &amp;st, const CppAD::vector&lt; double &gt; &amp;x) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html">gridfire::engine::GraphEngine::AtomicReverseRate</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#a23aed1727ab0cbba996561421e754018">reverse</a>(size_t q, const CppAD::vector&lt; double &gt; &amp;tx, const CppAD::vector&lt; double &gt; &amp;ty, CppAD::vector&lt; double &gt; &amp;px, const CppAD::vector&lt; double &gt; &amp;py) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html">gridfire::engine::GraphEngine::AtomicReverseRate</a></td><td class="entry"></td></tr>
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diff --git a/docs/html/classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html b/docs/html/classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::engine::GraphEngine::AtomicReverseRate Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
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+<div class="dynheader">
+Inheritance diagram for gridfire::engine::GraphEngine::AtomicReverseRate:</div>
+<div class="dyncontent">
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::engine::GraphEngine::AtomicReverseRate:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate__coll__graph.svg" width="100%" height="600"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a29639c336e8a6786ec2edea98915c0a4" id="r_a29639c336e8a6786ec2edea98915c0a4"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#a29639c336e8a6786ec2edea98915c0a4">AtomicReverseRate</a> (const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;reaction, const <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a> &amp;engine)</td></tr>
+<tr class="separator:a29639c336e8a6786ec2edea98915c0a4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9bd23c85ea5e8ad14a0175931852640d" id="r_a9bd23c85ea5e8ad14a0175931852640d"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#a9bd23c85ea5e8ad14a0175931852640d">forward</a> (size_t p, size_t q, const CppAD::vector&lt; bool &gt; &amp;vx, CppAD::vector&lt; bool &gt; &amp;vy, const CppAD::vector&lt; double &gt; &amp;tx, CppAD::vector&lt; double &gt; &amp;ty) override</td></tr>
+<tr class="separator:a9bd23c85ea5e8ad14a0175931852640d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a23aed1727ab0cbba996561421e754018"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a706c7a9a7c74333bb77a99c1ada8dc65"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:af5b5eff42682cf278fa4559e50c47eed"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:abaa48f3861797a4721ab8841424854d3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a826f3f139f3767c72828990cd40dd415" id="r_a826f3f139f3767c72828990cd40dd415"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#a826f3f139f3767c72828990cd40dd415">m_reaction</a></td></tr>
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+<tr class="separator:ac4e9b5a30752c13dcf872a1eeec3734c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a29639c336e8a6786ec2edea98915c0a4" name="a29639c336e8a6786ec2edea98915c0a4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a29639c336e8a6786ec2edea98915c0a4">&#9670;&#160;</a></span>AtomicReverseRate()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::engine::GraphEngine::AtomicReverseRate::AtomicReverseRate </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a> &amp;&#160;</td>
+          <td class="paramname"><em>engine</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a2726876d934a53364e205dbc00a17cc9" name="a2726876d934a53364e205dbc00a17cc9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2726876d934a53364e205dbc00a17cc9">&#9670;&#160;</a></span>for_sparse_jac() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::GraphEngine::AtomicReverseRate::for_sparse_jac </td>
+          <td>(</td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>q</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; bool &gt; &amp;&#160;</td>
+          <td class="paramname"><em>r</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::vector&lt; bool &gt; &amp;&#160;</td>
+          <td class="paramname"><em>s</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>x</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a706c7a9a7c74333bb77a99c1ada8dc65" name="a706c7a9a7c74333bb77a99c1ada8dc65"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a706c7a9a7c74333bb77a99c1ada8dc65">&#9670;&#160;</a></span>for_sparse_jac() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::GraphEngine::AtomicReverseRate::for_sparse_jac </td>
+          <td>(</td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>q</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>r</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>s</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span></span>  </td>
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+</table>
+</div><div class="memdoc">
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+</div>
+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#a9bd23c85ea5e8ad14a0175931852640d">&#9670;&#160;</a></span>forward()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::GraphEngine::AtomicReverseRate::forward </td>
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+        <tr>
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+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>q</em>, </td>
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+          <td class="paramtype">const CppAD::vector&lt; bool &gt; &amp;&#160;</td>
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+        <tr>
+          <td class="paramkey"></td>
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+          <td class="paramtype">CppAD::vector&lt; bool &gt; &amp;&#160;</td>
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+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; double &gt; &amp;&#160;</td>
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+        <tr>
+          <td class="paramkey"></td>
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+        </tr>
+        <tr>
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+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span></span>  </td>
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+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
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+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
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+          <td class="paramname"><em>q</em>, </td>
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+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
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+          <td class="paramname"><em>rt</em>, </td>
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+        <tr>
+          <td class="paramkey"></td>
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+          <td class="paramkey"></td>
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+        <tr>
+          <td></td>
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+  </td>
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+<div class="memitem">
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+          <td class="paramname"><em>q</em>, </td>
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+        <tr>
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+          <td></td>
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+          <td class="paramname"><em>q</em>, </td>
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+        <tr>
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+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>tx</em>, </td>
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+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>ty</em>, </td>
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+          <td class="paramkey"></td>
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+</div>
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+<h2 class="groupheader">Member Data Documentation</h2>
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+<h2 class="memtitle"><span class="permalink"><a href="#ac4e9b5a30752c13dcf872a1eeec3734c">&#9670;&#160;</a></span>m_engine</h2>
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+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a>&amp; gridfire::engine::GraphEngine::AtomicReverseRate::m_engine</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a826f3f139f3767c72828990cd40dd415" name="a826f3f139f3767c72828990cd40dd415"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a826f3f139f3767c72828990cd40dd415">&#9670;&#160;</a></span>m_reaction</h2>
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+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a>&amp; gridfire::engine::GraphEngine::AtomicReverseRate::m_reaction</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
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+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/engine/<a class="el" href="engine__graph_8h.html">engine_graph.h</a></li>
+<li>src/lib/engine/<a class="el" href="engine__graph_8cpp.html">engine_graph.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1engine.html">engine</a></li><li class="navelem"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a></li><li class="navelem"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html">AtomicReverseRate</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.js b/docs/html/classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.js
new file mode 100644
index 00000000..8eefd4a7
--- /dev/null
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+var classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate =
+[
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+    [ "for_sparse_jac", "classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#a2726876d934a53364e205dbc00a17cc9", null ],
+    [ "for_sparse_jac", "classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#a706c7a9a7c74333bb77a99c1ada8dc65", null ],
+    [ "forward", "classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#a9bd23c85ea5e8ad14a0175931852640d", null ],
+    [ "rev_sparse_jac", "classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#abaa48f3861797a4721ab8841424854d3", null ],
+    [ "rev_sparse_jac", "classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#af5b5eff42682cf278fa4559e50c47eed", null ],
+    [ "reverse", "classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#a23aed1727ab0cbba996561421e754018", null ],
+    [ "m_engine", "classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#ac4e9b5a30752c13dcf872a1eeec3734c", null ],
+    [ "m_reaction", "classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#a826f3f139f3767c72828990cd40dd415", null ]
+];
\ No newline at end of file
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+<text text-anchor="middle" x="1044.5" y="-863.36" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_reactionNameMap</text>
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+<text text-anchor="start" x="837.5" y="-821.36" font-family="Helvetica,sans-Serif" font-size="10.00">std::unordered_set</text>
+<text text-anchor="middle" x="883" y="-810.36" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; size_t &gt;</text>
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+<text text-anchor="middle" x="1044.5" y="-840.36" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_reactionHashes</text>
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+<text text-anchor="middle" x="1232" y="-625.86" font-family="Helvetica,sans-Serif" font-size="10.00"> size_t &gt;</text>
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+<!-- Node27&#45;&gt;Node29 -->
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+<title>Node27&#45;&gt;Node29</title>
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+<text text-anchor="middle" x="1232" y="-733.86" font-family="Helvetica,sans-Serif" font-size="10.00">::Species &gt;</text>
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+</g>
+<!-- Node27&#45;&gt;Node30 -->
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+<!-- Node28&#45;&gt;Node4 -->
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+<text text-anchor="middle" x="1442" y="-567.36" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_networkSpeciesMap</text>
+</g>
+<!-- Node29&#45;&gt;Node4 -->
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+<title>Node29&#45;&gt;Node4</title>
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+</g>
+<text text-anchor="middle" x="1442" y="-636.36" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_speciesToIndexMap</text>
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+<!-- Node30&#45;&gt;Node4 -->
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+<title>Node30&#45;&gt;Node4</title>
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+<text text-anchor="middle" x="1442" y="-757.36" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_indexToSpeciesMap</text>
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+<!-- Node31 -->
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+<text text-anchor="start" x="1183.5" y="-228.36" font-family="Helvetica,sans-Serif" font-size="10.00">std::set&lt; std::pair</text>
+<text text-anchor="middle" x="1232" y="-217.36" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; size_t, size_t &gt; &gt;</text>
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+<!-- Node31&#45;&gt;Node4 -->
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+<text text-anchor="middle" x="1442" y="-253.36" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_full_sparsity_set</text>
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+<!-- Node14 -->
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+<title>Node14</title>
+<g id="a_Node000014"><a xlink:href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html" target="_top" xlink:title="Interpolated weak&#45;rate payload at a single state.">
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+<text text-anchor="middle" x="57" y="-694" font-family="Helvetica,sans-Serif" font-size="10.00">::WeakRatePayload</text>
+</a>
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+<title>Node14&#45;&gt;Node13</title>
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+<!-- Node15&#45;&gt;Node1 -->
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+<title>Node15&#45;&gt;Node1</title>
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+<text text-anchor="middle" x="1373" y="-533" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_reactions</text>
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+<!-- Node16 -->
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+<text text-anchor="start" x="798" y="-494.5" font-family="Helvetica,sans-Serif" font-size="10.00">std::vector&lt; std::unique</text>
+<text text-anchor="start" x="798" y="-483.5" font-family="Helvetica,sans-Serif" font-size="10.00">_ptr&lt; gridfire::reaction</text>
+<text text-anchor="middle" x="857" y="-472.5" font-family="Helvetica,sans-Serif" font-size="10.00">::Reaction &gt; &gt;</text>
+</a>
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+</g>
+<!-- Node16&#45;&gt;Node15 -->
+<g id="edge15_Node000015_Node000016" class="edge">
+<title>Node16&#45;&gt;Node15</title>
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+<text text-anchor="start" x="483" y="-485" font-family="Helvetica,sans-Serif" font-size="10.00">std::unique_ptr&lt; gridfire</text>
+<text text-anchor="middle" x="542.5" y="-474" font-family="Helvetica,sans-Serif" font-size="10.00">::reaction::Reaction &gt;</text>
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+<!-- Node17&#45;&gt;Node16 -->
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+<text text-anchor="middle" x="291.5" y="-429" font-family="Helvetica,sans-Serif" font-size="10.00">::Reaction</text>
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+</g>
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+<text text-anchor="start" x="1135.5" y="-499" font-family="Helvetica,sans-Serif" font-size="10.00">std::unordered_map</text>
+<text text-anchor="start" x="1135.5" y="-488" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; std::string_view,</text>
+<text text-anchor="start" x="1135.5" y="-477" font-family="Helvetica,sans-Serif" font-size="10.00"> gridfire::reaction::</text>
+<text text-anchor="middle" x="1184.5" y="-466" font-family="Helvetica,sans-Serif" font-size="10.00">Reaction * &gt;</text>
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+<text text-anchor="middle" x="1018.5" y="-3" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_reaction</text>
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+<!-- Node19&#45;&gt;Node15 -->
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+<title>Node19&#45;&gt;Node15</title>
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+<text text-anchor="middle" x="1018.5" y="-579" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_reactionNameMap</text>
+</g>
+<!-- Node20 -->
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+<title>Node20</title>
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+<text text-anchor="start" x="811.5" y="-543" font-family="Helvetica,sans-Serif" font-size="10.00">std::unordered_set</text>
+<text text-anchor="middle" x="857" y="-532" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; size_t &gt;</text>
+</a>
+</g>
+</g>
+<!-- Node20&#45;&gt;Node15 -->
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+<title>Node20&#45;&gt;Node15</title>
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+<text text-anchor="middle" x="1018.5" y="-546" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_reactionHashes</text>
+</g>
+<!-- Node21&#45;&gt;Node1 -->
+<g id="edge22_Node000001_Node000021" class="edge">
+<title>Node21&#45;&gt;Node1</title>
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+<text text-anchor="middle" x="1373" y="-469" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_reactionIDMap</text>
+</g>
+<!-- Node22 -->
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+<title>Node22</title>
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+<text text-anchor="middle" x="857" y="-390.5" font-family="Helvetica,sans-Serif" font-size="10.00">std::string_view</text>
+</a>
+</g>
+</g>
+<!-- Node22&#45;&gt;Node21 -->
+<g id="edge23_Node000021_Node000022" class="edge">
+<title>Node22&#45;&gt;Node21</title>
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+<text text-anchor="start" x="1118" y="-358.5" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; std::string_view,</text>
+<text text-anchor="middle" x="1184.5" y="-347.5" font-family="Helvetica,sans-Serif" font-size="10.00"> fourdst::atomic::Species &gt;</text>
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+<!-- Node22&#45;&gt;Node26 -->
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+<text text-anchor="middle" x="542.5" y="-385" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; Char &gt;</text>
+</a>
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+<!-- Node23&#45;&gt;Node22 -->
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+<text text-anchor="start" x="1135.5" y="-310" font-family="Helvetica,sans-Serif" font-size="10.00">std::vector&lt; fourdst</text>
+<text text-anchor="middle" x="1184.5" y="-299" font-family="Helvetica,sans-Serif" font-size="10.00">::atomic::Species &gt;</text>
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+<text text-anchor="middle" x="1373" y="-367" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_networkSpecies</text>
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+</g>
+<!-- Node25&#45;&gt;Node24 -->
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+<title>Node25&#45;&gt;Node24</title>
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+<text text-anchor="start" x="1118" y="-428.5" font-family="Helvetica,sans-Serif" font-size="10.00">std::unordered_map</text>
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+<text text-anchor="middle" x="1184.5" y="-406.5" font-family="Helvetica,sans-Serif" font-size="10.00"> size_t &gt;</text>
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+<!-- Node25&#45;&gt;Node28 -->
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+<title>Node27&#45;&gt;Node1</title>
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+<title>Node28&#45;&gt;Node1</title>
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+<!-- Node29 -->
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+<text text-anchor="start" x="1136" y="-202" font-family="Helvetica,sans-Serif" font-size="10.00">std::set&lt; std::pair</text>
+<text text-anchor="middle" x="1184.5" y="-191" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; size_t, size_t &gt; &gt;</text>
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+<!-- Node29&#45;&gt;Node1 -->
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+<!-- Node30 -->
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+<text text-anchor="start" x="2266" y="-393.5" font-family="Helvetica,sans-Serif" font-size="10.00">_ptr&lt; gridfire::engine</text>
+<text text-anchor="middle" x="2363" y="-382.5" font-family="Helvetica,sans-Serif" font-size="10.00">::GraphEngine::AtomicReverseRate &gt; &gt;</text>
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+</g>
+<!-- Node30&#45;&gt;Node1 -->
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+<text text-anchor="middle" x="1960" y="-413" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_atomicReverseRates</text>
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+<text text-anchor="start" x="2046" y="-367.5" font-family="Helvetica,sans-Serif" font-size="10.00">::engine::GraphEngine::</text>
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+</g>
+<!-- Node31&#45;&gt;Node30 -->
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+<text text-anchor="start" x="1506" y="-364" font-family="Helvetica,sans-Serif" font-size="10.00">CppAD::atomic_base</text>
+<text text-anchor="middle" x="1557" y="-353" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; double &gt;</text>
+</a>
+</g>
+</g>
+<!-- Node33&#45;&gt;Node32 -->
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+</g>
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+<!-- Node35&#45;&gt;Node34 -->
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+<text text-anchor="middle" x="1184.5" y="-83.5" font-family="Helvetica,sans-Serif" font-size="10.00">::PrecomputedReaction &gt;</text>
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+</g>
+</g>
+<!-- Node36&#45;&gt;Node1 -->
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+<title>Node36&#45;&gt;Node1</title>
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+<text text-anchor="middle" x="1373" y="-112" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_precomputedReactions</text>
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+<!-- Node37 -->
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+<title>Node37</title>
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+</g>
+</g>
+<!-- Node37&#45;&gt;Node36 -->
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+</g>
+<!-- Node38&#45;&gt;Node37 -->
+<g id="edge46_Node000037_Node000038" class="edge">
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+<text text-anchor="middle" x="694" y="-131" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey">unique_product_indices</text>
+<text text-anchor="middle" x="694" y="-120" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey">unique_reactant_indices</text>
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+<!-- Node39 -->
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+<text text-anchor="middle" x="542.5" y="-66.5" font-family="Helvetica,sans-Serif" font-size="10.00">std::vector&lt; int &gt;</text>
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+</g>
+</g>
+<!-- Node39&#45;&gt;Node37 -->
+<g id="edge47_Node000037_Node000039" class="edge">
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+<text text-anchor="middle" x="694" y="-84" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey">reactant_powers</text>
+<text text-anchor="middle" x="694" y="-73" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey">stoichiometric_coefficients</text>
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+<text text-anchor="start" x="1135.5" y="-46" font-family="Helvetica,sans-Serif" font-size="10.00">std::unordered_map</text>
+<text text-anchor="middle" x="1184.5" y="-35" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; uint64_t, size_t &gt;</text>
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+</g>
+<!-- Node40&#45;&gt;Node1 -->
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+<title>Node40&#45;&gt;Node1</title>
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+<text text-anchor="middle" x="1373" y="-56" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_precomputedReactionIndexMap</text>
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+<text text-anchor="middle" x="1373" y="-830" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_partitionFunction</text>
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+<text text-anchor="middle" x="1373" y="-56" font-family="Helvetica,sans-Serif" font-size="10.00" fill="grey"> m_precomputedReactionIndexMap</text>
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+  <div class="headertitle"><div class="title">gridfire::engine::MultiscalePartitioningEngineView Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a8d4153f520b486dbb262888e22b95896">analyzeTimescalePoolConnectivity</a>(const std::vector&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt; &amp;timescale_pools, const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a35482c1d5f1d2b3f2cd6c3976432644e">buildConnectivityGraph</a>(const std::vector&lt; fourdst::atomic::Species &gt; &amp;species_pool, const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#ac720fcea2f0304c3d7e7ba8a6dfb84da">calculateEpsDerivatives</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#af030c9bd6a95686a09429b4619ad188c">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aa960005503d18066015aef280680d616">calculateRHSAndEnergy</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a97d9616558f681ad010ee452394f3519">collectComposition</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a28502c9e8fc0a40211fd3717c2b67214">constructCandidateGroups</a>(const std::vector&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt; &amp;candidate_pools, const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#accbf5a67f126627833a4169a81f1be01">exportToDot</a>(const std::string &amp;filename, const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a8950fb9c0c36684538805de4f0acf82e">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aae6c00cff4f7a992513d1e9481436f8f">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const std::vector&lt; fourdst::atomic::Species &gt; &amp;activeSpecies) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a64b6e7e5794cc42edf72899d348d15af">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a552fa7e1f4e066fa577c55500e782014">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#ad80faf5bea2153480cbfb323ed805686">getBaseEngine</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ac5a0def6b6af0bd93bf9057c25f048ff">getDepth</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a7d2f445ae7b75d4cd879afb6e960e0f7">getDynamicSpecies</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aebb0977daa8c6a9c496f0f989f950fae">getFastSpecies</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a9dc9de4359beb704b94024f159ae619d">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aa7aa38cf054988d050c04c59f28efdaa">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a6fc4cb156a287f579cb0f0c5d88d74d0">getNormalizedEquilibratedComposition</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#accdd09720d44cc5efb1ee267706f0500">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a27d68f2e6c4572445cd94dc472470a01">getSpeciesDestructionTimescales</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#ae0c02c830cf45568a7c4d35d4ed15e95">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aec5ebaccf625e39d0fa6c1330855d008">getSpeciesStatus</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a86390e410db48addfe8dbd094743c38e">getSpeciesTimescales</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a1372e7a823841c819f6c1a15d38217a6">getStoichiometryMatrixEntry</a>(const fourdst::atomic::Species &amp;species, const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#ae7f2939150a5ed84e51028c8ebd83d17">group_is_a_qse_cluster</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho, const QSEGroup &amp;group) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a6adac01afdd51cb3660e38731afbd265">group_is_a_qse_pipeline</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho, const QSEGroup &amp;group) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a72d813f71b378dfd6f632e6b9adf1cc5">identifyMeanSlowestPool</a>(const std::vector&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt; &amp;pools, const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#ad8615cd1f4b78ec1c1448c96c54913e4">involvesSpecies</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aa55fe8b346dca4a06027acac9a2547a3">involvesSpeciesInDynamic</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a4476e65dd6ce8700f5163ff7b29185e4">involvesSpeciesInQSE</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a10dd189ba40dbb604fdf55746b5d4b79">isStale</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#ab6c4cddda054dfa35f6e0a083015dc9d">m_activeReactionIndices</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a40ddd53c7f5482237e4bad38525ee100">m_activeSpeciesIndices</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#abcf6a7ba929fe4c45e2a4deeb2bfca82">m_algebraic_abundances</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aac8ac0afe8fd443b661d849e9b1b5e72">m_algebraic_species</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a460e8e46d38b81efa510714a3375f674">m_baseEngine</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a38b0eb7e7e454e001254aa823b1ec3f7">m_composition_cache</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a69baf327ba82f923859c569bc4d76ee8">m_dynamic_species</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#add096961cacfa9206ae5227d4f3a3c36">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a36ccf1d3b4cefba461acddcb238f27a5">m_qse_groups</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a3d0cde126563adc97b998bade1132603">m_qse_solvers</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a76c2ce886f8774f56a2ee9e0ae1b9893">m_sun_ctx</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aa839c3893ff9fb8e5a4187224dac7b47">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a4da0432598ecb0415b70b94d8300d3ef">merge_coupled_groups</a>(const std::vector&lt; QSEGroup &gt; &amp;groups, const std::vector&lt; reaction::ReactionSet &gt; &amp;groupReactions)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a0a500b19283ad3dd654ca4c4646b2604">MultiscalePartitioningEngineView</a>(DynamicEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aaba92340dd44399c48bc219ec63f94e2">partitionByTimescale</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a7629f98050d71160fc34e5c7c0b3e959">partitionNetwork</a>(const NetIn &amp;netIn)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#afabb6222bd6cbe3277b6c8639203be25">primeEngine</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a601a4fb916f003c9ff7cf000a8006bab">pruneValidatedGroups</a>(const std::vector&lt; QSEGroup &gt; &amp;groups, const std::vector&lt; reaction::ReactionSet &gt; &amp;groupReactions, const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a892741542388166db4dc55631567ee0a">QSEPartition</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a2444b9ed3bc61920ce23c546444269e4">rebuild</a>(const fourdst::composition::CompositionAbstract &amp;comp, BuildDepthType depth)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aa378d0e0fa6018b989d83945daa47952">setNetworkReactions</a>(const reaction::ReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#ad11aa1e168ec03d0c3ed90eeddcefe52">setScreeningModel</a>(screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a6c785a6334e5fd9593d3e279bafee592">solveQSEAbundances</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a28c8ac1ec594cf55a297e3f9586e214a">update</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#acf5cfbd18ebb2566f637cb176f861423">validateGroupsWithFluxAnalysis</a>(const std::vector&lt; QSEGroup &gt; &amp;candidate_groups, const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html#af0ea99416c28933d364a872fc6aff556">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html">gridfire::engine::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a17d63e853d6efca31064e9147c80d497">~EngineView</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html">gridfire::engine::EngineView&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#ae553a4d590c0cfae5591bcd8bbe6f9d3">~MultiscalePartitioningEngineView</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">gridfire::engine::MultiscalePartitioningEngineView</a></td><td class="entry"></td></tr>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<a href="#nested-classes">Classes</a> &#124;
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-types">Private Types</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#pri-static-methods">Static Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::engine::MultiscalePartitioningEngineView Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>An engine view that partitions the reaction network into multiple groups based on timescales.  
+ <a href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#details">More...</a></p>
+
+<p><code>#include &lt;engine_multiscale.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::engine::MultiscalePartitioningEngineView:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView__inherit__graph.svg" width="408" height="212"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::engine::MultiscalePartitioningEngineView:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView__coll__graph.svg" width="100%" height="600"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1FluxValidationResult.html">FluxValidationResult</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">QSEGroup</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Struct representing a QSE group.  <a href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">QSESolver</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a0a500b19283ad3dd654ca4c4646b2604" id="r_a0a500b19283ad3dd654ca4c4646b2604"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a0a500b19283ad3dd654ca4c4646b2604">MultiscalePartitioningEngineView</a> (<a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a> &amp;baseEngine)</td></tr>
+<tr class="memdesc:a0a500b19283ad3dd654ca4c4646b2604"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html" title="An engine view that partitions the reaction network into multiple groups based on timescales.">MultiscalePartitioningEngineView</a>.  <br /></td></tr>
+<tr class="separator:a0a500b19283ad3dd654ca4c4646b2604"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae553a4d590c0cfae5591bcd8bbe6f9d3" id="r_ae553a4d590c0cfae5591bcd8bbe6f9d3"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#ae553a4d590c0cfae5591bcd8bbe6f9d3">~MultiscalePartitioningEngineView</a> () override</td></tr>
+<tr class="separator:ae553a4d590c0cfae5591bcd8bbe6f9d3"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:aa7aa38cf054988d050c04c59f28efdaa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the list of species in the network.  <br /></td></tr>
+<tr class="separator:aa7aa38cf054988d050c04c59f28efdaa"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:aa960005503d18066015aef280680d616"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the right-hand side (dY/dt) and energy generation.  <br /></td></tr>
+<tr class="separator:aa960005503d18066015aef280680d616"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:ac720fcea2f0304c3d7e7ba8a6dfb84da"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the energy generation rate derivatives with respect to abundances.  <br /></td></tr>
+<tr class="separator:ac720fcea2f0304c3d7e7ba8a6dfb84da"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a8950fb9c0c36684538805de4f0acf82e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the Jacobian matrix for the current state.  <br /></td></tr>
+<tr class="separator:a8950fb9c0c36684538805de4f0acf82e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aae6c00cff4f7a992513d1e9481436f8f" id="r_aae6c00cff4f7a992513d1e9481436f8f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aae6c00cff4f7a992513d1e9481436f8f">generateJacobianMatrix</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const std::vector&lt; fourdst::atomic::Species &gt; &amp;activeSpecies) const override</td></tr>
+<tr class="memdesc:aae6c00cff4f7a992513d1e9481436f8f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the Jacobian matrix for a subset of active species.  <br /></td></tr>
+<tr class="separator:aae6c00cff4f7a992513d1e9481436f8f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a64b6e7e5794cc42edf72899d348d15af" id="r_a64b6e7e5794cc42edf72899d348d15af"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a64b6e7e5794cc42edf72899d348d15af">generateJacobianMatrix</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const <a class="el" href="namespacegridfire_1_1engine.html#af5175018d2d1e78a8826dd33ec6d675f">SparsityPattern</a> &amp;sparsityPattern) const override</td></tr>
+<tr class="memdesc:a64b6e7e5794cc42edf72899d348d15af"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the Jacobian matrix using a sparsity pattern.  <br /></td></tr>
+<tr class="separator:a64b6e7e5794cc42edf72899d348d15af"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a552fa7e1f4e066fa577c55500e782014" id="r_a552fa7e1f4e066fa577c55500e782014"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a552fa7e1f4e066fa577c55500e782014">generateStoichiometryMatrix</a> () override</td></tr>
+<tr class="memdesc:a552fa7e1f4e066fa577c55500e782014"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generates the stoichiometry matrix for the network.  <br /></td></tr>
+<tr class="separator:a552fa7e1f4e066fa577c55500e782014"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1372e7a823841c819f6c1a15d38217a6" id="r_a1372e7a823841c819f6c1a15d38217a6"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a1372e7a823841c819f6c1a15d38217a6">getStoichiometryMatrixEntry</a> (const fourdst::atomic::Species &amp;species, const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;reaction) const override</td></tr>
+<tr class="memdesc:a1372e7a823841c819f6c1a15d38217a6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets an entry from the stoichiometry matrix.  <br /></td></tr>
+<tr class="separator:a1372e7a823841c819f6c1a15d38217a6"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:af030c9bd6a95686a09429b4619ad188c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the molar reaction flow for a given reaction.  <br /></td></tr>
+<tr class="separator:af030c9bd6a95686a09429b4619ad188c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9dc9de4359beb704b94024f159ae619d" id="r_a9dc9de4359beb704b94024f159ae619d"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a9dc9de4359beb704b94024f159ae619d">getNetworkReactions</a> () const override</td></tr>
+<tr class="memdesc:a9dc9de4359beb704b94024f159ae619d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the set of logical reactions in the network.  <br /></td></tr>
+<tr class="separator:a9dc9de4359beb704b94024f159ae619d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa378d0e0fa6018b989d83945daa47952" id="r_aa378d0e0fa6018b989d83945daa47952"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aa378d0e0fa6018b989d83945daa47952">setNetworkReactions</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;reactions) override</td></tr>
+<tr class="memdesc:aa378d0e0fa6018b989d83945daa47952"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the set of logical reactions in the network.  <br /></td></tr>
+<tr class="separator:aa378d0e0fa6018b989d83945daa47952"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a86390e410db48addfe8dbd094743c38e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes timescales for all species in the network.  <br /></td></tr>
+<tr class="separator:a86390e410db48addfe8dbd094743c38e"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a6c785a6334e5fd9593d3e279bafee592"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a35482c1d5f1d2b3f2cd6c3976432644e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Builds a connectivity graph from a species pool.  <br /></td></tr>
+<tr class="separator:a35482c1d5f1d2b3f2cd6c3976432644e"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a8d4153f520b486dbb262888e22b95896"><td class="mdescLeft">&#160;</td><td class="mdescRight">Analyzes the connectivity of timescale pools.  <br /></td></tr>
+<tr class="separator:a8d4153f520b486dbb262888e22b95896"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a601a4fb916f003c9ff7cf000a8006bab"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-static-methods" name="pri-static-methods"></a>
+Static Private Member Functions</h2></td></tr>
+<tr class="memitem:a4da0432598ecb0415b70b94d8300d3ef" id="r_a4da0432598ecb0415b70b94d8300d3ef"><td class="memItemLeft" align="right" valign="top">static std::vector&lt; <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">QSEGroup</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a4da0432598ecb0415b70b94d8300d3ef">merge_coupled_groups</a> (const std::vector&lt; <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">QSEGroup</a> &gt; &amp;groups, const std::vector&lt; <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &gt; &amp;groupReactions)</td></tr>
+<tr class="separator:a4da0432598ecb0415b70b94d8300d3ef"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:add096961cacfa9206ae5227d4f3a3c36" id="r_add096961cacfa9206ae5227d4f3a3c36"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#add096961cacfa9206ae5227d4f3a3c36">m_logger</a> = LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="memdesc:add096961cacfa9206ae5227d4f3a3c36"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logger instance for logging messages.  <br /></td></tr>
+<tr class="separator:add096961cacfa9206ae5227d4f3a3c36"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a460e8e46d38b81efa510714a3375f674"><td class="mdescLeft">&#160;</td><td class="mdescRight">The base engine to which this view delegates calculations.  <br /></td></tr>
+<tr class="separator:a460e8e46d38b81efa510714a3375f674"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a36ccf1d3b4cefba461acddcb238f27a5"><td class="mdescLeft">&#160;</td><td class="mdescRight">The list of identified equilibrium groups.  <br /></td></tr>
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+<tr class="memdesc:a3d0cde126563adc97b998bade1132603"><td class="mdescLeft">&#160;</td><td class="mdescRight">A set of solvers, one for each QSE group.  <br /></td></tr>
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+<tr class="memdesc:a40ddd53c7f5482237e4bad38525ee100"><td class="mdescLeft">&#160;</td><td class="mdescRight">Indices of all species considered active in the current partition (dynamic + algebraic).  <br /></td></tr>
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+<tr class="memitem:a38b0eb7e7e454e001254aa823b1ec3f7" id="r_a38b0eb7e7e454e001254aa823b1ec3f7"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; uint64_t, fourdst::composition::Composition &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a38b0eb7e7e454e001254aa823b1ec3f7">m_composition_cache</a></td></tr>
+<tr class="separator:a38b0eb7e7e454e001254aa823b1ec3f7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a76c2ce886f8774f56a2ee9e0ae1b9893" id="r_a76c2ce886f8774f56a2ee9e0ae1b9893"><td class="memItemLeft" align="right" valign="top">SUNContext&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a76c2ce886f8774f56a2ee9e0ae1b9893">m_sun_ctx</a> = nullptr</td></tr>
+<tr class="separator:a76c2ce886f8774f56a2ee9e0ae1b9893"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>An engine view that partitions the reaction network into multiple groups based on timescales. </p>
+<dl class="section user"><dt>Purpose</dt><dd>This class is designed to accelerate the integration of stiff nuclear reaction networks. It identifies species that react on very short timescales ("fast" species) and treats them as being in Quasi-Steady-State Equilibrium (QSE). Their abundances are solved for algebraically, removing their stiff differential equations from the system. The remaining "slow" or "dynamic" species are integrated normally. This significantly improves the stability and performance of the solver.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>The core logic resides in the <code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a7629f98050d71160fc34e5c7c0b3e959" title="Partitions the network based on timescales from a NetIn struct.">partitionNetwork()</a></code> and <code>equilibrateNetwork()</code> methods. The partitioning process involves:<ol type="1">
+<li><b>Timescale Analysis:</b> Using <code>getSpeciesDestructionTimescales</code> from the base engine, all species are sorted by their characteristic timescales.</li>
+<li><b>Gap Detection:</b> The sorted list of timescales is scanned for large gaps (e.g., several orders of magnitude) to create distinct "timescale pools".</li>
+<li><b>Connectivity Analysis:</b> Each pool is analyzed for internal reaction connectivity to form cohesive groups.</li>
+<li><b>Flux Validation:</b> Candidate QSE groups are validated by comparing the total reaction flux <em>within</em> the group to the flux <em>leaving</em> the group. A high internal-to-external flux ratio indicates a valid QSE group.</li>
+<li><b>QSE Solve:</b> For valid QSE groups, <code>solveQSEAbundances</code> uses a Levenberg-Marquardt nonlinear solver (<code>Eigen::LevenbergMarquardt</code>) to find the equilibrium abundances of the "algebraic" species, holding the "seed" species constant.</li>
+</ol>
+</dd></dl>
+<p>All calculations are cached using <code>QSECacheKey</code> to avoid re-partitioning and re-solving for similar thermodynamic conditions.</p>
+<dl class="section user"><dt>Usage Example:</dt><dd><div class="fragment"><div class="line"><span class="comment">// 1. Create a base engine (e.g., GraphEngine)</span></div>
+<div class="line">gridfire::GraphEngine baseEngine(composition);</div>
+<div class="line"> </div>
+<div class="line"><span class="comment">// 2. Wrap it with the MultiscalePartitioningEngineView</span></div>
+<div class="line">gridfire::MultiscalePartitioningEngineView multiscaleEngine(baseEngine);</div>
+<div class="line"> </div>
+<div class="line"><span class="comment">// 3. Before integration, update the view to partition the network</span></div>
+<div class="line"><span class="comment">//    and find the initial equilibrium state.</span></div>
+<div class="line"><a class="code hl_struct" href="structgridfire_1_1NetIn.html">NetIn</a> initialConditions = { .<a class="code hl_variable" href="structgridfire_1_1NetIn.html#a13058f4929e72c1187abbebcddb8aed1">composition</a> = composition, .temperature = 1e8, .density = 1e3 };</div>
+<div class="line">fourdst::composition::Composition equilibratedComp = multiscaleEngine.update(initialConditions);</div>
+<div class="line"> </div>
+<div class="line"><span class="comment">// 4. Use the multiscaleEngine for integration. It will use the cached QSE solution.</span></div>
+<div class="line"><span class="comment">//    The integrator will call calculateRHSAndEnergy, etc. on the multiscaleEngine.</span></div>
+<div class="line"><span class="keyword">auto</span> Y_initial = multiscaleEngine.mapNetInToMolarAbundanceVector({equilibratedComp, ...});</div>
+<div class="line"><span class="keyword">auto</span> derivatives = multiscaleEngine.calculateRHSAndEnergy(Y_initial, T9, rho);</div>
+<div class="ttc" id="astructgridfire_1_1NetIn_html"><div class="ttname"><a href="structgridfire_1_1NetIn.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> types.h:27</div></div>
+<div class="ttc" id="astructgridfire_1_1NetIn_html_a13058f4929e72c1187abbebcddb8aed1"><div class="ttname"><a href="structgridfire_1_1NetIn.html#a13058f4929e72c1187abbebcddb8aed1">gridfire::NetIn::composition</a></div><div class="ttdeci">fourdst::composition::Composition composition</div><div class="ttdoc">Composition of the network.</div><div class="ttdef"><b>Definition</b> types.h:28</div></div>
+</div><!-- fragment --></dd></dl>
+<p>&lt;DynamicEngine&gt; </p>
+</div><h2 class="groupheader">Member Typedef Documentation</h2>
+<a id="a892741542388166db4dc55631567ee0a" name="a892741542388166db4dc55631567ee0a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a892741542388166db4dc55631567ee0a">&#9670;&#160;</a></span>QSEPartition</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">typedef std::tuple&lt;std::vector&lt;fourdst::atomic::Species&gt;, std::vector&lt;size_t&gt;, std::vector&lt;fourdst::atomic::Species&gt;, std::vector&lt;size_t&gt; &gt; <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a892741542388166db4dc55631567ee0a">gridfire::engine::MultiscalePartitioningEngineView::QSEPartition</a></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Type alias for a QSE partition. </p>
+<p>A QSE partition is a tuple containing the fast species, their indices, the slow species, and their indices. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a0a500b19283ad3dd654ca4c4646b2604" name="a0a500b19283ad3dd654ca4c4646b2604"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0a500b19283ad3dd654ca4c4646b2604">&#9670;&#160;</a></span>MultiscalePartitioningEngineView()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::engine::MultiscalePartitioningEngineView::MultiscalePartitioningEngineView </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a> &amp;&#160;</td>
+          <td class="paramname"><em>baseEngine</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructs a <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html" title="An engine view that partitions the reaction network into multiple groups based on timescales.">MultiscalePartitioningEngineView</a>. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">baseEngine</td><td>The underlying <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html" title="A reaction network engine that uses a graph-based representation.">GraphEngine</a> to which this view delegates calculations. It must be a <code><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html" title="A reaction network engine that uses a graph-based representation.">GraphEngine</a></code> and not a more general <code><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a></code> because this view relies on its specific implementation details. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="ae553a4d590c0cfae5591bcd8bbe6f9d3" name="ae553a4d590c0cfae5591bcd8bbe6f9d3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae553a4d590c0cfae5591bcd8bbe6f9d3">&#9670;&#160;</a></span>~MultiscalePartitioningEngineView()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::engine::MultiscalePartitioningEngineView::~MultiscalePartitioningEngineView </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a8d4153f520b486dbb262888e22b95896" name="a8d4153f520b486dbb262888e22b95896"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8d4153f520b486dbb262888e22b95896">&#9670;&#160;</a></span>analyzeTimescalePoolConnectivity()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; std::vector&lt; Species &gt; &gt; gridfire::engine::MultiscalePartitioningEngineView::analyzeTimescalePoolConnectivity </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>timescale_pools</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Analyzes the connectivity of timescale pools. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">timescale_pools</td><td>A vector of vectors of species indices, where each inner vector represents a timescale pool. </td></tr>
+    <tr><td class="paramname">comp</td><td></td></tr>
+    <tr><td class="paramname">T9</td><td></td></tr>
+    <tr><td class="paramname">rho</td><td></td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of vectors of species indices, where each inner vector represents a single connected component.</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>To merge timescale pools that are strongly connected by reactions, forming cohesive groups for QSE analysis.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>For each pool, it builds a reaction connectivity graph using <code>buildConnectivityGraph</code>. It then finds the connected components within that graph using a Breadth-First Search (BFS). The resulting components from all pools are collected and returned. </dd></dl>
+
+</div>
+</div>
+<a id="a35482c1d5f1d2b3f2cd6c3976432644e" name="a35482c1d5f1d2b3f2cd6c3976432644e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a35482c1d5f1d2b3f2cd6c3976432644e">&#9670;&#160;</a></span>buildConnectivityGraph()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt; Species, std::vector&lt; Species &gt; &gt; gridfire::engine::MultiscalePartitioningEngineView::buildConnectivityGraph </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>species_pool</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Builds a connectivity graph from a species pool. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species_pool</td><td>A vector of species indices representing a species pool. </td></tr>
+    <tr><td class="paramname">comp</td><td></td></tr>
+    <tr><td class="paramname">T9</td><td></td></tr>
+    <tr><td class="paramname">rho</td><td></td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>An unordered map representing the adjacency list of the connectivity graph.</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>To find reaction connections within a specific group of species.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>It iterates through all reactions in the base engine. If a reaction involves at least two distinct species from the input <code>species_pool</code> (one as a reactant and one as a product), it adds edges between all reactants and products from that reaction that are also in the pool. </dd></dl>
+
+</div>
+</div>
+<a id="ac720fcea2f0304c3d7e7ba8a6dfb84da" name="ac720fcea2f0304c3d7e7ba8a6dfb84da"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac720fcea2f0304c3d7e7ba8a6dfb84da">&#9670;&#160;</a></span>calculateEpsDerivatives()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html">EnergyDerivatives</a> gridfire::engine::MultiscalePartitioningEngineView::calculateEpsDerivatives </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the energy generation rate derivatives with respect to abundances. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The current composition. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The energy generation rate derivatives (dEps/dT and dEps/drho). </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ada6a1295a92c2aede841672ecae0cede">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="af030c9bd6a95686a09429b4619ad188c" name="af030c9bd6a95686a09429b4619ad188c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af030c9bd6a95686a09429b4619ad188c">&#9670;&#160;</a></span>calculateMolarReactionFlow()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::engine::MultiscalePartitioningEngineView::calculateMolarReactionFlow </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the molar reaction flow for a given reaction. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The reaction for which to calculate the flow. </td></tr>
+    <tr><td class="paramname">comp</td><td>The current composition. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Molar flow rate for the reaction (e.g., mol/g/s).</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>To compute the net rate of a single reaction.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>It first checks the QSE cache. On a hit, it retrieves the cached equilibrium abundances for the algebraic species. It creates a mutable copy of <code>Y_full</code>, overwrites the algebraic species abundances with the cached equilibrium values, and then calls the base engine's <code>calculateMolarReactionFlow</code> with this modified abundance vector.</dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>The engine must have a valid QSE cache entry for the given state. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">StaleEngineError</td><td>If the QSE cache misses. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aa57fa5e58b98a03fba31bcddda8001d4">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="aa960005503d18066015aef280680d616" name="aa960005503d18066015aef280680d616"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa960005503d18066015aef280680d616">&#9670;&#160;</a></span>calculateRHSAndEnergy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; <a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">StepDerivatives</a>&lt; double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt; gridfire::engine::MultiscalePartitioningEngineView::calculateRHSAndEnergy </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the right-hand side (dY/dt) and energy generation. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The current composition. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <code>std::expected</code> containing <code><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html" title="Structure holding derivatives and energy generation for a network step.">StepDerivatives</a>&lt;double&gt;</code> on success, or a <code>StaleEngineError</code> if the engine's QSE cache does not contain a solution for the given state.</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>To compute the time derivatives for the ODE solver. This implementation modifies the derivatives from the base engine to enforce the QSE condition.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>It first performs a lookup in the QSE abundance cache (<code>m_qse_abundance_cache</code>). If a cache hit occurs, it calls the base engine's <code>calculateRHSAndEnergy</code>. It then manually sets the time derivatives (<code>dydt</code>) of all identified algebraic species to zero, effectively removing their differential equations from the system being solved.</dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>The engine must have been updated via <code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a28c8ac1ec594cf55a297e3f9586e214a" title="Updates the internal state of the engine, performing partitioning and QSE equilibration.">update()</a></code> or <code>equilibrateNetwork()</code> for the current thermodynamic conditions, so that a valid entry exists in the QSE cache. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The returned derivatives will have <code>dydt=0</code> for all algebraic species.</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">StaleEngineError</td><td>If the QSE cache does not contain an entry for the given (T9, rho, Y_full). This indicates <code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a28c8ac1ec594cf55a297e3f9586e214a" title="Updates the internal state of the engine, performing partitioning and QSE equilibration.">update()</a></code> was not called recently enough. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1Engine.html#a764fc091c72c12c8529105d7c96badb2">gridfire::engine::Engine</a>.</p>
+
+</div>
+</div>
+<a id="a97d9616558f681ad010ee452394f3519" name="a97d9616558f681ad010ee452394f3519"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a97d9616558f681ad010ee452394f3519">&#9670;&#160;</a></span>collectComposition()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::composition::Composition gridfire::engine::MultiscalePartitioningEngineView::collectComposition </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Collect the composition from this and sub engines. </p>
+<p>This method operates by injecting the current equilibrium abundances for algebraic species into the composition object so that they can be bubbled up to the caller. </p><dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Input Composition </td></tr>
+    <tr><td class="paramname">T9</td><td></td></tr>
+    <tr><td class="paramname">rho</td><td></td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>New composition which is comp + any edits from lower levels + the equilibrium abundances of all algebraic species. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">BadCollectionError</td><td>if there is a species in the algebraic species set which does not show up in the reported composition from the base engine.:w </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a41877719ae5e8de53c1692c7cf9bfbfc">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a28502c9e8fc0a40211fd3717c2b67214" name="a28502c9e8fc0a40211fd3717c2b67214"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a28502c9e8fc0a40211fd3717c2b67214">&#9670;&#160;</a></span>constructCandidateGroups()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">MultiscalePartitioningEngineView::QSEGroup</a> &gt; gridfire::engine::MultiscalePartitioningEngineView::constructCandidateGroups </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>candidate_pools</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructs candidate QSE groups from connected timescale pools. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">candidate_pools</td><td>A vector of vectors of species indices, where each inner vector represents a connected pool of species with similar fast timescales. </td></tr>
+    <tr><td class="paramname">comp</td><td>Vector of current molar abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of <code><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html" title="Struct representing a QSE group.">QSEGroup</a></code> structs, ready for flux validation.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>For each input pool, it identifies "bridge" reactions that connect the pool to species outside the pool. The reactants of these bridge reactions that are <em>not</em> in the pool are identified as "seed" species. The original pool members are the "algebraic" species. It then bundles the seed and algebraic species into a <code><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html" title="Struct representing a QSE group.">QSEGroup</a></code> struct.</dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>The <code>candidate_pools</code> should be connected components from <code>analyzeTimescalePoolConnectivity</code>. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>A list of candidate <code><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html" title="Struct representing a QSE group.">QSEGroup</a></code> objects is returned. </dd></dl>
+
+</div>
+</div>
+<a id="accbf5a67f126627833a4169a81f1be01" name="accbf5a67f126627833a4169a81f1be01"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#accbf5a67f126627833a4169a81f1be01">&#9670;&#160;</a></span>exportToDot()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::MultiscalePartitioningEngineView::exportToDot </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>filename</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Exports the network to a DOT file for visualization. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">filename</td><td>The name of the DOT file to create. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Purpose</dt><dd>To visualize the partitioned network graph.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>This method delegates the DOT file export to the base engine. It does not currently add any partitioning information to the output graph. </dd></dl>
+
+</div>
+</div>
+<a id="a8950fb9c0c36684538805de4f0acf82e" name="a8950fb9c0c36684538805de4f0acf82e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8950fb9c0c36684538805de4f0acf82e">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[1/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> gridfire::engine::MultiscalePartitioningEngineView::generateJacobianMatrix </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generates the Jacobian matrix for the current state. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The current composition. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Purpose</dt><dd>To compute the Jacobian matrix required by implicit ODE solvers.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>It first performs a QSE cache lookup. On a hit, it delegates the full Jacobian calculation to the base engine. While this view could theoretically return a modified, sparser Jacobian reflecting the QSE constraints, the current implementation returns the full Jacobian from the base engine. The solver is expected to handle the algebraic constraints (e.g., via <code>dydt=0</code> from <code>calculateRHSAndEnergy</code>).</dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>The engine must have a valid QSE cache entry for the given state. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The base engine's internal Jacobian is updated.</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">exceptions::StaleEngineError</td><td>If the QSE cache misses, as it cannot proceed without a valid partition. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a53276f09346b531f8676db355e1219eb">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a64b6e7e5794cc42edf72899d348d15af" name="a64b6e7e5794cc42edf72899d348d15af"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a64b6e7e5794cc42edf72899d348d15af">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[2/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> gridfire::engine::MultiscalePartitioningEngineView::generateJacobianMatrix </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1engine.html#af5175018d2d1e78a8826dd33ec6d675f">SparsityPattern</a> &amp;&#160;</td>
+          <td class="paramname"><em>sparsityPattern</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generates the Jacobian matrix using a sparsity pattern. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The current composition. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+    <tr><td class="paramname">sparsityPattern</td><td>The sparsity pattern to use for the Jacobian.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Purpose</dt><dd>To compute the Jacobian matrix while leveraging a known sparsity pattern for efficiency. This is effectively a lower level version of the active species method.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>It first checks the QSE cache. On a hit, it delegates to the base engine's <code>generateJacobianMatrix</code> method with the provided sparsity pattern.</dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>The engine must have a valid QSE cache entry for the given state. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The base engine's internal Jacobian is updated according to the sparsity pattern.</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">exceptions::StaleEngineError</td><td>If the QSE cache misses. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a51d55a21be28e372021b2b8e5ecdc551">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="aae6c00cff4f7a992513d1e9481436f8f" name="aae6c00cff4f7a992513d1e9481436f8f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aae6c00cff4f7a992513d1e9481436f8f">&#9670;&#160;</a></span>generateJacobianMatrix() <span class="overload">[3/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> gridfire::engine::MultiscalePartitioningEngineView::generateJacobianMatrix </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>activeSpecies</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generates the Jacobian matrix for a subset of active species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The current composition. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+    <tr><td class="paramname">activeSpecies</td><td>The subset of species to include in the Jacobian.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Purpose</dt><dd>To compute a reduced Jacobian matrix for implicit solvers that only consider a subset of species.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>Similar to the full Jacobian generation, it first checks the QSE cache. On a hit, it calls the base engine's <code>generateJacobianMatrix</code> with the specified active species. The returned Jacobian still reflects the full network, but only for the active species subset.</dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>The engine must have a valid QSE cache entry for the given state. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The base engine's internal Jacobian is updated for the active species.</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">exceptions::StaleEngineError</td><td>If the QSE cache misses. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a15d53dac8b622a3b7d0f928a3995dbde">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a552fa7e1f4e066fa577c55500e782014" name="a552fa7e1f4e066fa577c55500e782014"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a552fa7e1f4e066fa577c55500e782014">&#9670;&#160;</a></span>generateStoichiometryMatrix()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::MultiscalePartitioningEngineView::generateStoichiometryMatrix </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generates the stoichiometry matrix for the network. </p>
+<dl class="section user"><dt>Purpose</dt><dd>To prepare the stoichiometry matrix for later queries.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>This method delegates directly to the base engine's <code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a552fa7e1f4e066fa577c55500e782014" title="Generates the stoichiometry matrix for the network.">generateStoichiometryMatrix()</a></code>. The stoichiometry is based on the full, unpartitioned network. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a5e2c45a3e415b53e41def8f743f93464">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="ad80faf5bea2153480cbfb323ed805686" name="ad80faf5bea2153480cbfb323ed805686"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad80faf5bea2153480cbfb323ed805686">&#9670;&#160;</a></span>getBaseEngine()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a> &amp; gridfire::engine::MultiscalePartitioningEngineView::getBaseEngine </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the base engine. </p>
+<dl class="section return"><dt>Returns</dt><dd>A const reference to the base engine. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a7884ea8e5618e295e64150f3ecf2c6b5">gridfire::engine::EngineView&lt; DynamicEngine &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a7d2f445ae7b75d4cd879afb6e960e0f7" name="a7d2f445ae7b75d4cd879afb6e960e0f7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7d2f445ae7b75d4cd879afb6e960e0f7">&#9670;&#160;</a></span>getDynamicSpecies()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt; Species &gt; &amp; gridfire::engine::MultiscalePartitioningEngineView::getDynamicSpecies </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Gets the dynamic species in the network. </p>
+<dl class="section return"><dt>Returns</dt><dd>A const reference to the vector of species identified as "dynamic" or "slow".</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>To allow external queries of the partitioning results.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>It returns a const reference to the <code>m_dynamic_species</code> member vector.</dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd><code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a7629f98050d71160fc34e5c7c0b3e959" title="Partitions the network based on timescales from a NetIn struct.">partitionNetwork()</a></code> must have been called. </dd></dl>
+
+</div>
+</div>
+<a id="aebb0977daa8c6a9c496f0f989f950fae" name="aebb0977daa8c6a9c496f0f989f950fae"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aebb0977daa8c6a9c496f0f989f950fae">&#9670;&#160;</a></span>getFastSpecies()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; Species &gt; gridfire::engine::MultiscalePartitioningEngineView::getFastSpecies </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Gets the fast species in the network. </p>
+<dl class="section return"><dt>Returns</dt><dd>A vector of species identified as "fast" or "algebraic" by the partitioning.</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>To allow external queries of the partitioning results.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>It returns a copy of the <code>m_algebraic_species</code> member vector.</dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd><code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a7629f98050d71160fc34e5c7c0b3e959" title="Partitions the network based on timescales from a NetIn struct.">partitionNetwork()</a></code> must have been called. </dd></dl>
+
+</div>
+</div>
+<a id="a9dc9de4359beb704b94024f159ae619d" name="a9dc9de4359beb704b94024f159ae619d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9dc9de4359beb704b94024f159ae619d">&#9670;&#160;</a></span>getNetworkReactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp; gridfire::engine::MultiscalePartitioningEngineView::getNetworkReactions </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the set of logical reactions in the network. </p>
+<dl class="section return"><dt>Returns</dt><dd>A const reference to the <code>LogicalReactionSet</code> from the base engine, containing all reactions in the full network. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a26b59a4c7622bf820c0eeec6a7522aa8">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="aa7aa38cf054988d050c04c59f28efdaa" name="aa7aa38cf054988d050c04c59f28efdaa"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa7aa38cf054988d050c04c59f28efdaa">&#9670;&#160;</a></span>getNetworkSpecies()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt; Species &gt; &amp; gridfire::engine::MultiscalePartitioningEngineView::getNetworkSpecies </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the list of species in the network. </p>
+<dl class="section return"><dt>Returns</dt><dd>A const reference to the vector of <code>Species</code> objects representing all species in the underlying base engine. This view does not alter the species list itself, only how their abundances are evolved. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1Engine.html#a3263c3fde2509d5d8ec4da3b6e946c48">gridfire::engine::Engine</a>.</p>
+
+</div>
+</div>
+<a id="a6fc4cb156a287f579cb0f0c5d88d74d0" name="a6fc4cb156a287f579cb0f0c5d88d74d0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6fc4cb156a287f579cb0f0c5d88d74d0">&#9670;&#160;</a></span>getNormalizedEquilibratedComposition()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::composition::Composition gridfire::engine::MultiscalePartitioningEngineView::getNormalizedEquilibratedComposition </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Gets a normalized composition with QSE species equilibrated. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The input composition. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A new <code>Composition</code> object with algebraic species set to their equilibrium values.</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>To provide a way to get the equilibrated composition without modifying the internal state.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>It calls <code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a6c785a6334e5fd9593d3e279bafee592" title="Solves for the QSE abundances of the algebraic species in a given state.">solveQSEAbundances()</a></code> to compute the equilibrium abundances for the algebraic species, then constructs a new <code>Composition</code> object reflecting these values.</dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>The engine must have a valid QSE partition for the given state. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">StaleEngineError</td><td>If the QSE cache misses. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="accdd09720d44cc5efb1ee267706f0500" name="accdd09720d44cc5efb1ee267706f0500"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#accdd09720d44cc5efb1ee267706f0500">&#9670;&#160;</a></span>getScreeningModel()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a> gridfire::engine::MultiscalePartitioningEngineView::getScreeningModel </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the current electron screening model. </p>
+<dl class="section return"><dt>Returns</dt><dd>The currently active screening model type.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>This method delegates directly to the base engine's <code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#accdd09720d44cc5efb1ee267706f0500" title="Gets the current electron screening model.">getScreeningModel()</a></code>. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a24103027a38e02d4342161164554d332">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a27d68f2e6c4572445cd94dc472470a01" name="a27d68f2e6c4572445cd94dc472470a01"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a27d68f2e6c4572445cd94dc472470a01">&#9670;&#160;</a></span>getSpeciesDestructionTimescales()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; std::unordered_map&lt; Species, double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt; gridfire::engine::MultiscalePartitioningEngineView::getSpeciesDestructionTimescales </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Computes destruction timescales for all species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The current composition. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <code>std::expected</code> containing a map from <code>Species</code> to their characteristic destruction timescales (s) on success, or a <code>StaleEngineError</code> on failure.</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>To get the timescale for species destruction, which is used as the primary metric for network partitioning.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>It delegates the calculation to the base engine. For any species identified as algebraic (in QSE), it manually sets their timescale to 0.0.</dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>The engine must have a valid QSE cache entry for the given state. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">StaleEngineError</td><td>If the QSE cache misses. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aefc5d0f7842b27a108ba1e4ca346e9a0">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="ae0c02c830cf45568a7c4d35d4ed15e95" name="ae0c02c830cf45568a7c4d35d4ed15e95"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae0c02c830cf45568a7c4d35d4ed15e95">&#9670;&#160;</a></span>getSpeciesIndex()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::engine::MultiscalePartitioningEngineView::getSpeciesIndex </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the index of a species in the full network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to get the index of. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The index of the species in the base engine's network.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>This method delegates directly to the base engine's <code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#ae0c02c830cf45568a7c4d35d4ed15e95" title="Gets the index of a species in the full network.">getSpeciesIndex()</a></code>. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ac0f40017603e8e6887b75dc7360d7c5e">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="aec5ebaccf625e39d0fa6c1330855d008" name="aec5ebaccf625e39d0fa6c1330855d008"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aec5ebaccf625e39d0fa6c1330855d008">&#9670;&#160;</a></span>getSpeciesStatus()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1engine.html#a83c9d755597668bba3cf00cd0ea10ee3">SpeciesStatus</a> gridfire::engine::MultiscalePartitioningEngineView::getSpeciesStatus </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the status of a species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to query. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The <code>SpeciesStatus</code> indicating if the species is dynamic, algebraic, or not involved.</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>To allow external queries about the role of a species in the partitioned network.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>It checks for membership in <code>m_dynamic_species</code> and <code>m_algebraic_species</code> to determine the appropriate status.</dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd><code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a7629f98050d71160fc34e5c7c0b3e959" title="Partitions the network based on timescales from a NetIn struct.">partitionNetwork()</a></code> must have been called. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a8aebefad50c1aa34207e118e92d7ccf0">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a86390e410db48addfe8dbd094743c38e" name="a86390e410db48addfe8dbd094743c38e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a86390e410db48addfe8dbd094743c38e">&#9670;&#160;</a></span>getSpeciesTimescales()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; std::unordered_map&lt; Species, double &gt;, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> &gt; gridfire::engine::MultiscalePartitioningEngineView::getSpeciesTimescales </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Computes timescales for all species in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>The current composition. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <code>std::expected</code> containing a map from <code>Species</code> to their characteristic timescales (s) on success, or a <code>StaleEngineError</code> on failure.</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>To get the characteristic timescale <code>Y / (dY/dt)</code> for each species.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>It delegates the calculation to the base engine. For any species identified as algebraic (in QSE), it manually sets their timescale to 0.0 to signify that they equilibrate instantaneously on the timescale of the solver.</dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>The engine must have a valid QSE cache entry for the given state. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">StaleEngineError</td><td>If the QSE cache misses. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aef6ed91d922c0b1733fd7835e99d0efe">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a1372e7a823841c819f6c1a15d38217a6" name="a1372e7a823841c819f6c1a15d38217a6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1372e7a823841c819f6c1a15d38217a6">&#9670;&#160;</a></span>getStoichiometryMatrixEntry()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::engine::MultiscalePartitioningEngineView::getStoichiometryMatrixEntry </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets an entry from the stoichiometry matrix. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>Species to look up stoichiometry for. </td></tr>
+    <tr><td class="paramname">reaction</td><td>Reaction to find. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Stoichiometric coefficient for the species in the reaction.</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>To query the stoichiometric relationship between a species and a reaction.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>This method delegates directly to the base engine's <code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a1372e7a823841c819f6c1a15d38217a6" title="Gets an entry from the stoichiometry matrix.">getStoichiometryMatrixEntry()</a></code>.</dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd><code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a552fa7e1f4e066fa577c55500e782014" title="Generates the stoichiometry matrix for the network.">generateStoichiometryMatrix()</a></code> must have been called. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a5ce6ff370e3f0964c6b2688fb3f4bb7e">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="ae7f2939150a5ed84e51028c8ebd83d17" name="ae7f2939150a5ed84e51028c8ebd83d17"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae7f2939150a5ed84e51028c8ebd83d17">&#9670;&#160;</a></span>group_is_a_qse_cluster()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::pair&lt; bool, <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &gt; gridfire::engine::MultiscalePartitioningEngineView::group_is_a_qse_cluster </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">QSEGroup</a> &amp;&#160;</td>
+          <td class="paramname"><em>group</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a6adac01afdd51cb3660e38731afbd265" name="a6adac01afdd51cb3660e38731afbd265"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6adac01afdd51cb3660e38731afbd265">&#9670;&#160;</a></span>group_is_a_qse_pipeline()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::MultiscalePartitioningEngineView::group_is_a_qse_pipeline </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">QSEGroup</a> &amp;&#160;</td>
+          <td class="paramname"><em>group</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a72d813f71b378dfd6f632e6b9adf1cc5" name="a72d813f71b378dfd6f632e6b9adf1cc5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a72d813f71b378dfd6f632e6b9adf1cc5">&#9670;&#160;</a></span>identifyMeanSlowestPool()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::engine::MultiscalePartitioningEngineView::identifyMeanSlowestPool </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>pools</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Identifies the pool with the slowest mean timescale. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">pools</td><td>A vector of vectors of species indices, where each inner vector represents a timescale pool. </td></tr>
+    <tr><td class="paramname">comp</td><td>Vector of current molar abundances for the full network. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The index of the pool with the largest (slowest) mean destruction timescale.</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>To identify the core set of dynamic species that will not be part of any QSE group.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>It calculates the geometric mean of the destruction timescales for all species in each pool and returns the index of the pool with the maximum mean timescale. </dd></dl>
+
+</div>
+</div>
+<a id="ad8615cd1f4b78ec1c1448c96c54913e4" name="ad8615cd1f4b78ec1c1448c96c54913e4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad8615cd1f4b78ec1c1448c96c54913e4">&#9670;&#160;</a></span>involvesSpecies()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::MultiscalePartitioningEngineView::involvesSpecies </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Checks if a species is involved in the partitioned network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to check. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><code>true</code> if the species is in either the dynamic or algebraic sets, <code>false</code> otherwise.</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>To allow external queries about species involvement in the partitioned network.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>It checks for membership in both <code>m_dynamic_species</code> and <code>m_algebraic_species</code>.</dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd><code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a7629f98050d71160fc34e5c7c0b3e959" title="Partitions the network based on timescales from a NetIn struct.">partitionNetwork()</a></code> must have been called. </dd></dl>
+
+</div>
+</div>
+<a id="aa55fe8b346dca4a06027acac9a2547a3" name="aa55fe8b346dca4a06027acac9a2547a3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa55fe8b346dca4a06027acac9a2547a3">&#9670;&#160;</a></span>involvesSpeciesInDynamic()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::MultiscalePartitioningEngineView::involvesSpeciesInDynamic </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Check if a species is involved in the dynamic set. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to check. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Boolean indicating if the species is in the dynamic set. </dd></dl>
+
+</div>
+</div>
+<a id="a4476e65dd6ce8700f5163ff7b29185e4" name="a4476e65dd6ce8700f5163ff7b29185e4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4476e65dd6ce8700f5163ff7b29185e4">&#9670;&#160;</a></span>involvesSpeciesInQSE()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::MultiscalePartitioningEngineView::involvesSpeciesInQSE </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Check if a species is involved in the QSE (algebraic) set. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to check. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Boolean indicating if the species is in the algebraic set. </dd></dl>
+
+</div>
+</div>
+<a id="a10dd189ba40dbb604fdf55746b5d4b79" name="a10dd189ba40dbb604fdf55746b5d4b79"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a10dd189ba40dbb604fdf55746b5d4b79">&#9670;&#160;</a></span>isStale()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::MultiscalePartitioningEngineView::isStale </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Checks if the engine's internal state is stale relative to the provided conditions. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>A struct containing the current network input. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><code>true</code> if the engine is stale, <code>false</code> otherwise.</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>To determine if <code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a28c8ac1ec594cf55a297e3f9586e214a" title="Updates the internal state of the engine, performing partitioning and QSE equilibration.">update()</a></code> needs to be called.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>It creates a <code>QSECacheKey</code> from the <code>netIn</code> data and checks for its existence in the <code>m_qse_abundance_cache</code>. A cache miss indicates the engine is stale because it does not have a valid QSE partition for the current conditions. It also queries the base engine's <code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a10dd189ba40dbb604fdf55746b5d4b79" title="Checks if the engine&#39;s internal state is stale relative to the provided conditions.">isStale()</a></code> method. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a79423b9f67b4cac702547b4f1d8bd14c">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="aa839c3893ff9fb8e5a4187224dac7b47" name="aa839c3893ff9fb8e5a4187224dac7b47"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa839c3893ff9fb8e5a4187224dac7b47">&#9670;&#160;</a></span>mapNetInToMolarAbundanceVector()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; double &gt; gridfire::engine::MultiscalePartitioningEngineView::mapNetInToMolarAbundanceVector </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Maps a <code><a class="el" href="structgridfire_1_1NetIn.html">NetIn</a></code> struct to a molar abundance vector for the full network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>A struct containing the current network input. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of molar abundances corresponding to the species order in the base engine.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>This method delegates directly to the base engine's <code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aa839c3893ff9fb8e5a4187224dac7b47" title="Maps a NetIn struct to a molar abundance vector for the full network.">mapNetInToMolarAbundanceVector()</a></code>. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aa9d55b81c1963113aad86aa60c19676f">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a4da0432598ecb0415b70b94d8300d3ef" name="a4da0432598ecb0415b70b94d8300d3ef"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4da0432598ecb0415b70b94d8300d3ef">&#9670;&#160;</a></span>merge_coupled_groups()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">MultiscalePartitioningEngineView::QSEGroup</a> &gt; gridfire::engine::MultiscalePartitioningEngineView::merge_coupled_groups </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">QSEGroup</a> &gt; &amp;&#160;</td>
+          <td class="paramname"><em>groups</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &gt; &amp;&#160;</td>
+          <td class="paramname"><em>groupReactions</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aaba92340dd44399c48bc219ec63f94e2" name="aaba92340dd44399c48bc219ec63f94e2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaba92340dd44399c48bc219ec63f94e2">&#9670;&#160;</a></span>partitionByTimescale()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; std::vector&lt; Species &gt; &gt; gridfire::engine::MultiscalePartitioningEngineView::partitionByTimescale </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Partitions the network by timescale. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Vector of current molar abundances for all species. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of vectors of species indices, where each inner vector represents a timescale pool.</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>To group species into "pools" based on their destruction timescales.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>It retrieves all species destruction timescales from the base engine, sorts them, and then iterates through the sorted list, creating a new pool whenever it detects a gap between consecutive timescales that is larger than a predefined threshold (e.g., a factor of 100). </dd></dl>
+
+</div>
+</div>
+<a id="a7629f98050d71160fc34e5c7c0b3e959" name="a7629f98050d71160fc34e5c7c0b3e959"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7629f98050d71160fc34e5c7c0b3e959">&#9670;&#160;</a></span>partitionNetwork()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::composition::Composition gridfire::engine::MultiscalePartitioningEngineView::partitionNetwork </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Partitions the network based on timescales from a <code><a class="el" href="structgridfire_1_1NetIn.html">NetIn</a></code> struct. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>A struct containing the current network input.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Purpose</dt><dd>A convenience overload for <code>partitionNetwork</code>.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>It unpacks the <code>netIn</code> struct into <code>Y</code>, <code>T9</code>, and <code>rho</code> and then calls the primary <code>partitionNetwork</code> method. </dd></dl>
+
+</div>
+</div>
+<a id="afabb6222bd6cbe3277b6c8639203be25" name="afabb6222bd6cbe3277b6c8639203be25"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afabb6222bd6cbe3277b6c8639203be25">&#9670;&#160;</a></span>primeEngine()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html">PrimingReport</a> gridfire::engine::MultiscalePartitioningEngineView::primeEngine </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Primes the engine with a specific species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>A struct containing the current network input. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <code><a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html" title="Captures the result of a network priming operation.">PrimingReport</a></code> struct containing information about the priming process.</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>To prepare the network for ignition or specific pathway studies.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>This method delegates directly to the base engine's <code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#afabb6222bd6cbe3277b6c8639203be25" title="Primes the engine with a specific species.">primeEngine()</a></code>. The multiscale view does not currently interact with the priming process. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a70e270bb50910c0055a75575c1ef1e95">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a601a4fb916f003c9ff7cf000a8006bab" name="a601a4fb916f003c9ff7cf000a8006bab"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a601a4fb916f003c9ff7cf000a8006bab">&#9670;&#160;</a></span>pruneValidatedGroups()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">MultiscalePartitioningEngineView::QSEGroup</a> &gt; gridfire::engine::MultiscalePartitioningEngineView::pruneValidatedGroups </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">QSEGroup</a> &gt; &amp;&#160;</td>
+          <td class="paramname"><em>groups</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &gt; &amp;&#160;</td>
+          <td class="paramname"><em>groupReactions</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aa378d0e0fa6018b989d83945daa47952" name="aa378d0e0fa6018b989d83945daa47952"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa378d0e0fa6018b989d83945daa47952">&#9670;&#160;</a></span>setNetworkReactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::MultiscalePartitioningEngineView::setNetworkReactions </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Sets the set of logical reactions in the network. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of logical reactions to use.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Purpose</dt><dd>To modify the reaction network.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>This operation is not supported by the <code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html" title="An engine view that partitions the reaction network into multiple groups based on timescales.">MultiscalePartitioningEngineView</a></code> as it would invalidate the partitioning logic. It logs a critical error and throws an exception. Network modifications should be done on the base engine before it is wrapped by this view.</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname"><a class="el" href="classgridfire_1_1exceptions_1_1UnableToSetNetworkReactionsError.html" title="Exception for failures in setting network reactions.">exceptions::UnableToSetNetworkReactionsError</a></td><td>Always. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ab321170954bffc53b1bedaf54f6976be">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="ad11aa1e168ec03d0c3ed90eeddcefe52" name="ad11aa1e168ec03d0c3ed90eeddcefe52"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad11aa1e168ec03d0c3ed90eeddcefe52">&#9670;&#160;</a></span>setScreeningModel()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::MultiscalePartitioningEngineView::setScreeningModel </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a>&#160;</td>
+          <td class="paramname"><em>model</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Sets the electron screening model. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">model</td><td>The type of screening model to use for reaction rate calculations.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>How</dt><dd>This method delegates directly to the base engine's <code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#ad11aa1e168ec03d0c3ed90eeddcefe52" title="Sets the electron screening model.">setScreeningModel()</a></code>. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a50e76977d0dc3cc23d52b51842d35003">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="a6c785a6334e5fd9593d3e279bafee592" name="a6c785a6334e5fd9593d3e279bafee592"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6c785a6334e5fd9593d3e279bafee592">&#9670;&#160;</a></span>solveQSEAbundances()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::composition::Composition gridfire::engine::MultiscalePartitioningEngineView::solveQSEAbundances </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Solves for the QSE abundances of the algebraic species in a given state. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">comp</td><td>Vector of current molar abundances for all species in the base engine. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of molar abundances for the algebraic species.</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>To find the equilibrium abundances of the algebraic species that satisfy the QSE conditions.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>It uses the Levenberg-Marquardt algorithm via Eigen's <code>LevenbergMarquardt</code> class. The problem is defined by the <code>EigenFunctor</code> which computes the residuals and Jacobian for the QSE equations.</dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>The input state (Y_full, T9, rho) must be a valid physical state. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The algebraic species in the QSE cache are updated with the new equilibrium abundances. </dd></dl>
+
+</div>
+</div>
+<a id="a28c8ac1ec594cf55a297e3f9586e214a" name="a28c8ac1ec594cf55a297e3f9586e214a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a28c8ac1ec594cf55a297e3f9586e214a">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::composition::Composition gridfire::engine::MultiscalePartitioningEngineView::update </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Updates the internal state of the engine, performing partitioning and QSE equilibration. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>A struct containing the current network input: temperature, density, and composition. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The new composition after QSE species have been brought to equilibrium.</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>This is the main entry point for preparing the multiscale engine for use. It triggers the network partitioning and solves for the initial QSE abundances, caching the result.</dd></dl>
+<p>@how</p><ol type="1">
+<li>It first checks the QSE cache. If a valid entry already exists for the input state, it returns the input composition, as no work is needed.</li>
+<li>If the cache misses, it calls <code>equilibrateNetwork()</code>.</li>
+<li><code>equilibrateNetwork()</code> in turn calls <code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a7629f98050d71160fc34e5c7c0b3e959" title="Partitions the network based on timescales from a NetIn struct.">partitionNetwork()</a></code> to define the dynamic and algebraic species sets.</li>
+<li>It then calls <code><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a6c785a6334e5fd9593d3e279bafee592" title="Solves for the QSE abundances of the algebraic species in a given state.">solveQSEAbundances()</a></code> to compute the equilibrium abundances.</li>
+<li>The resulting equilibrium abundances for the algebraic species are stored in the <code>m_qse_abundance_cache</code>.</li>
+<li>A new <code>fourdst::composition::Composition</code> object reflecting the equilibrated state is created and returned.</li>
+</ol>
+<dl class="section pre"><dt>Precondition</dt><dd>The <code>netIn</code> struct should contain a valid physical state. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The engine is partitioned (<code>m_dynamic_species</code>, <code>m_algebraic_species</code>, etc. are populated). The <code>m_qse_abundance_cache</code> is populated with the QSE solution for the given state. The returned composition reflects the new equilibrium. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a8dd85442ec54f20d91743c72364e36ff">gridfire::engine::DynamicEngine</a>.</p>
+
+</div>
+</div>
+<a id="acf5cfbd18ebb2566f637cb176f861423" name="acf5cfbd18ebb2566f637cb176f861423"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acf5cfbd18ebb2566f637cb176f861423">&#9670;&#160;</a></span>validateGroupsWithFluxAnalysis()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1FluxValidationResult.html">MultiscalePartitioningEngineView::FluxValidationResult</a> gridfire::engine::MultiscalePartitioningEngineView::validateGroupsWithFluxAnalysis </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">QSEGroup</a> &gt; &amp;&#160;</td>
+          <td class="paramname"><em>candidate_groups</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Validates candidate QSE groups using flux analysis. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">candidate_groups</td><td>A vector of candidate QSE groups. </td></tr>
+    <tr><td class="paramname">comp</td><td>Vector of current molar abundances for the full network. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of validated QSE groups that meet the flux criteria.</dd></dl>
+<dl class="section user"><dt>Purpose</dt><dd>To ensure that a candidate QSE group is truly in equilibrium by checking that the reaction fluxes <em>within</em> the group are much larger than the fluxes <em>leaving</em> the group.</dd></dl>
+<dl class="section user"><dt>How</dt><dd>For each candidate group, it calculates the sum of all internal reaction fluxes and the sum of all external (bridge) reaction fluxes. If the ratio of internal to external flux exceeds a configurable threshold, the group is considered valid and is added to the returned vector. </dd></dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="ab6c4cddda054dfa35f6e0a083015dc9d" name="ab6c4cddda054dfa35f6e0a083015dc9d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab6c4cddda054dfa35f6e0a083015dc9d">&#9670;&#160;</a></span>m_activeReactionIndices</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;size_t&gt; gridfire::engine::MultiscalePartitioningEngineView::m_activeReactionIndices</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Indices of all reactions involving only active species. </p>
+
+</div>
+</div>
+<a id="a40ddd53c7f5482237e4bad38525ee100" name="a40ddd53c7f5482237e4bad38525ee100"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a40ddd53c7f5482237e4bad38525ee100">&#9670;&#160;</a></span>m_activeSpeciesIndices</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;size_t&gt; gridfire::engine::MultiscalePartitioningEngineView::m_activeSpeciesIndices</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Indices of all species considered active in the current partition (dynamic + algebraic). </p>
+
+</div>
+</div>
+<a id="abcf6a7ba929fe4c45e2a4deeb2bfca82" name="abcf6a7ba929fe4c45e2a4deeb2bfca82"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abcf6a7ba929fe4c45e2a4deeb2bfca82">&#9670;&#160;</a></span>m_algebraic_abundances</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;fourdst::atomic::Species, double&gt; gridfire::engine::MultiscalePartitioningEngineView::m_algebraic_abundances</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Map from species to their calculated abundances in the QSE state. </p>
+
+</div>
+</div>
+<a id="aac8ac0afe8fd443b661d849e9b1b5e72" name="aac8ac0afe8fd443b661d849e9b1b5e72"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aac8ac0afe8fd443b661d849e9b1b5e72">&#9670;&#160;</a></span>m_algebraic_species</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;fourdst::atomic::Species&gt; gridfire::engine::MultiscalePartitioningEngineView::m_algebraic_species</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Species that are treated as algebraic (in QSE) in the QSE groups. </p>
+
+</div>
+</div>
+<a id="a460e8e46d38b81efa510714a3375f674" name="a460e8e46d38b81efa510714a3375f674"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a460e8e46d38b81efa510714a3375f674">&#9670;&#160;</a></span>m_baseEngine</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a>&amp; gridfire::engine::MultiscalePartitioningEngineView::m_baseEngine</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>The base engine to which this view delegates calculations. </p>
+
+</div>
+</div>
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+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;uint64_t, fourdst::composition::Composition&gt; gridfire::engine::MultiscalePartitioningEngineView::m_composition_cache</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a69baf327ba82f923859c569bc4d76ee8" name="a69baf327ba82f923859c569bc4d76ee8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a69baf327ba82f923859c569bc4d76ee8">&#9670;&#160;</a></span>m_dynamic_species</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;fourdst::atomic::Species&gt; gridfire::engine::MultiscalePartitioningEngineView::m_dynamic_species</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>The simplified set of species presented to the solver (the "slow" species). </p>
+
+</div>
+</div>
+<a id="add096961cacfa9206ae5227d4f3a3c36" name="add096961cacfa9206ae5227d4f3a3c36"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#add096961cacfa9206ae5227d4f3a3c36">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::engine::MultiscalePartitioningEngineView::m_logger = LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logger instance for logging messages. </p>
+
+</div>
+</div>
+<a id="a36ccf1d3b4cefba461acddcb238f27a5" name="a36ccf1d3b4cefba461acddcb238f27a5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a36ccf1d3b4cefba461acddcb238f27a5">&#9670;&#160;</a></span>m_qse_groups</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;<a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">QSEGroup</a>&gt; gridfire::engine::MultiscalePartitioningEngineView::m_qse_groups</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
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+</div><div class="memdoc">
+
+<p>The list of identified equilibrium groups. </p>
+
+</div>
+</div>
+<a id="a3d0cde126563adc97b998bade1132603" name="a3d0cde126563adc97b998bade1132603"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3d0cde126563adc97b998bade1132603">&#9670;&#160;</a></span>m_qse_solvers</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;std::unique_ptr&lt;<a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">QSESolver</a>&gt; &gt; gridfire::engine::MultiscalePartitioningEngineView::m_qse_solvers</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>A set of solvers, one for each QSE group. </p>
+
+</div>
+</div>
+<a id="a76c2ce886f8774f56a2ee9e0ae1b9893" name="a76c2ce886f8774f56a2ee9e0ae1b9893"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a76c2ce886f8774f56a2ee9e0ae1b9893">&#9670;&#160;</a></span>m_sun_ctx</h2>
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+  <td class="mlabels-left">
+      <table class="memname">
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+          <td class="memname">SUNContext gridfire::engine::MultiscalePartitioningEngineView::m_sun_ctx = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
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+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/engine/views/<a class="el" href="engine__multiscale_8h.html">engine_multiscale.h</a></li>
+<li>src/lib/engine/views/<a class="el" href="engine__multiscale_8cpp.html">engine_multiscale.cpp</a></li>
+</ul>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
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diff --git a/docs/html/classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.js b/docs/html/classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.js
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index 00000000..be4c0c2d
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+++ b/docs/html/classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.js
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+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a8759a711c25a587877fbccdebdb9ecd9">getLogger</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a616b818685cc51e0c1926a46435cbb68">log_diagnostics</a>(const QSEGroup &amp;group, const fourdst::composition::Composition &amp;comp) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a4ca611a4c787c2f79ecd3b900547fac6">m_constraints</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#abea3337e56ce71edf783506ef47a9f50">m_engine</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a219705d977e7593574e6e5c30fcc417a">m_f_scale</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#ae7a185c468a5aa89fc634564cbad11fb">m_func_tmpl</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a4015ddf2c8e43f67a92a3f7eb99d7ea8">m_has_jacobian</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#af1f5e08da10ac14cf89ca6cceaf5a107">m_J</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a3bdbe052602fbe5ef4c5e55234fabc3e">m_kinsol_mem</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a4da5ce19b4dd8f09d57a21feb002c29e">m_LS</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a5da604d8ef9f677e8eda68bda5755274">m_N</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#ac545aed391b0396e73dfbef6719d3887">m_scale</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#ae23a4066b2300223c4d52242c19c2200">m_solves</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a6cd6dd07a046bac3d177126be421b723">m_species</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#ae214780e957d7dd0f17c7cacc604dd7e">m_speciesMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a9c69bae124936b4843876306e9d03860">m_sun_ctx</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#ad5d00b0dfeb9dd9ba54f75e8c80f62ab">m_Y</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a338cd55e34af1286f0f4593b04be7508">operator=</a>(const QSESolver &amp;other)=delete</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a953520d6b705533fbdea699a50e31d54">QSESolver</a>(const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const DynamicEngine &amp;engine, SUNContext sun_ctx)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a37c03744aea2c7e16b977c2f6a19691a">QSESolver</a>(const QSESolver &amp;other)=delete</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#aa6f28cf2f5759efad7d428f6794cc151">solve</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a420ca8991dd60fac7a9d18fae0eda0c1">solves</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a58b7b2ac01c40084cc839309267e400e">sys_func</a>(N_Vector y, N_Vector f, void *user_data)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a9a34e36baa074c1b39b230e0b5010a82">sys_jac</a>(N_Vector y, N_Vector fy, SUNMatrix J, void *user_data, N_Vector tmp1, N_Vector tmp2)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a308ee7b77cde2658ea0c1e43827cea49">~QSESolver</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
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diff --git a/docs/html/classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html b/docs/html/classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html
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+<a href="#nested-classes">Classes</a> &#124;
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-static-methods">Static Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::engine::MultiscalePartitioningEngineView::QSESolver Class Reference</div></div>
+</div><!--header-->
+<div class="contents">
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+Collaboration diagram for gridfire::engine::MultiscalePartitioningEngineView::QSESolver:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver__coll__graph.svg" width="100%" height="446"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver_1_1UserData.html">UserData</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a953520d6b705533fbdea699a50e31d54" id="r_a953520d6b705533fbdea699a50e31d54"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a953520d6b705533fbdea699a50e31d54">QSESolver</a> (const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a> &amp;engine, SUNContext sun_ctx)</td></tr>
+<tr class="separator:a953520d6b705533fbdea699a50e31d54"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a37c03744aea2c7e16b977c2f6a19691a" id="r_a37c03744aea2c7e16b977c2f6a19691a"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a37c03744aea2c7e16b977c2f6a19691a">QSESolver</a> (const <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">QSESolver</a> &amp;other)=delete</td></tr>
+<tr class="separator:a37c03744aea2c7e16b977c2f6a19691a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a338cd55e34af1286f0f4593b04be7508" id="r_a338cd55e34af1286f0f4593b04be7508"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">QSESolver</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a338cd55e34af1286f0f4593b04be7508">operator=</a> (const <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">QSESolver</a> &amp;other)=delete</td></tr>
+<tr class="separator:a338cd55e34af1286f0f4593b04be7508"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a308ee7b77cde2658ea0c1e43827cea49" id="r_a308ee7b77cde2658ea0c1e43827cea49"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a308ee7b77cde2658ea0c1e43827cea49">~QSESolver</a> ()</td></tr>
+<tr class="separator:a308ee7b77cde2658ea0c1e43827cea49"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa6f28cf2f5759efad7d428f6794cc151" id="r_aa6f28cf2f5759efad7d428f6794cc151"><td class="memItemLeft" align="right" valign="top">fourdst::composition::Composition&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#aa6f28cf2f5759efad7d428f6794cc151">solve</a> (const fourdst::composition::Composition &amp;comp, double T9, double rho) const</td></tr>
+<tr class="separator:aa6f28cf2f5759efad7d428f6794cc151"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a420ca8991dd60fac7a9d18fae0eda0c1"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a616b818685cc51e0c1926a46435cbb68"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-static-methods" name="pri-static-methods"></a>
+Static Private Member Functions</h2></td></tr>
+<tr class="memitem:a58b7b2ac01c40084cc839309267e400e" id="r_a58b7b2ac01c40084cc839309267e400e"><td class="memItemLeft" align="right" valign="top">static int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a58b7b2ac01c40084cc839309267e400e">sys_func</a> (N_Vector y, N_Vector f, void *user_data)</td></tr>
+<tr class="separator:a58b7b2ac01c40084cc839309267e400e"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a9a34e36baa074c1b39b230e0b5010a82"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a8759a711c25a587877fbccdebdb9ecd9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:ae23a4066b2300223c4d52242c19c2200" id="r_ae23a4066b2300223c4d52242c19c2200"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#ae23a4066b2300223c4d52242c19c2200">m_solves</a> = 0</td></tr>
+<tr class="separator:ae23a4066b2300223c4d52242c19c2200"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4015ddf2c8e43f67a92a3f7eb99d7ea8" id="r_a4015ddf2c8e43f67a92a3f7eb99d7ea8"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a4015ddf2c8e43f67a92a3f7eb99d7ea8">m_has_jacobian</a> = false</td></tr>
+<tr class="separator:a4015ddf2c8e43f67a92a3f7eb99d7ea8"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a5da604d8ef9f677e8eda68bda5755274"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abea3337e56ce71edf783506ef47a9f50" id="r_abea3337e56ce71edf783506ef47a9f50"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#abea3337e56ce71edf783506ef47a9f50">m_engine</a></td></tr>
+<tr class="separator:abea3337e56ce71edf783506ef47a9f50"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6cd6dd07a046bac3d177126be421b723" id="r_a6cd6dd07a046bac3d177126be421b723"><td class="memItemLeft" align="right" valign="top">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a6cd6dd07a046bac3d177126be421b723">m_species</a></td></tr>
+<tr class="separator:a6cd6dd07a046bac3d177126be421b723"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae214780e957d7dd0f17c7cacc604dd7e" id="r_ae214780e957d7dd0f17c7cacc604dd7e"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; fourdst::atomic::Species, size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#ae214780e957d7dd0f17c7cacc604dd7e">m_speciesMap</a></td></tr>
+<tr class="separator:ae214780e957d7dd0f17c7cacc604dd7e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9c69bae124936b4843876306e9d03860" id="r_a9c69bae124936b4843876306e9d03860"><td class="memItemLeft" align="right" valign="top">SUNContext&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a9c69bae124936b4843876306e9d03860">m_sun_ctx</a> = nullptr</td></tr>
+<tr class="separator:a9c69bae124936b4843876306e9d03860"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3bdbe052602fbe5ef4c5e55234fabc3e" id="r_a3bdbe052602fbe5ef4c5e55234fabc3e"><td class="memItemLeft" align="right" valign="top">void *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a3bdbe052602fbe5ef4c5e55234fabc3e">m_kinsol_mem</a> = nullptr</td></tr>
+<tr class="separator:a3bdbe052602fbe5ef4c5e55234fabc3e"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:ad5d00b0dfeb9dd9ba54f75e8c80f62ab"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac545aed391b0396e73dfbef6719d3887" id="r_ac545aed391b0396e73dfbef6719d3887"><td class="memItemLeft" align="right" valign="top">N_Vector&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#ac545aed391b0396e73dfbef6719d3887">m_scale</a> = nullptr</td></tr>
+<tr class="separator:ac545aed391b0396e73dfbef6719d3887"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a219705d977e7593574e6e5c30fcc417a" id="r_a219705d977e7593574e6e5c30fcc417a"><td class="memItemLeft" align="right" valign="top">N_Vector&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a219705d977e7593574e6e5c30fcc417a">m_f_scale</a> = nullptr</td></tr>
+<tr class="separator:a219705d977e7593574e6e5c30fcc417a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4ca611a4c787c2f79ecd3b900547fac6" id="r_a4ca611a4c787c2f79ecd3b900547fac6"><td class="memItemLeft" align="right" valign="top">N_Vector&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a4ca611a4c787c2f79ecd3b900547fac6">m_constraints</a> = nullptr</td></tr>
+<tr class="separator:a4ca611a4c787c2f79ecd3b900547fac6"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:ae7a185c468a5aa89fc634564cbad11fb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af1f5e08da10ac14cf89ca6cceaf5a107" id="r_af1f5e08da10ac14cf89ca6cceaf5a107"><td class="memItemLeft" align="right" valign="top">SUNMatrix&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#af1f5e08da10ac14cf89ca6cceaf5a107">m_J</a> = nullptr</td></tr>
+<tr class="separator:af1f5e08da10ac14cf89ca6cceaf5a107"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4da5ce19b4dd8f09d57a21feb002c29e" id="r_a4da5ce19b4dd8f09d57a21feb002c29e"><td class="memItemLeft" align="right" valign="top">SUNLinearSolver&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a4da5ce19b4dd8f09d57a21feb002c29e">m_LS</a> = nullptr</td></tr>
+<tr class="separator:a4da5ce19b4dd8f09d57a21feb002c29e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a953520d6b705533fbdea699a50e31d54" name="a953520d6b705533fbdea699a50e31d54"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a953520d6b705533fbdea699a50e31d54">&#9670;&#160;</a></span>QSESolver() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::engine::MultiscalePartitioningEngineView::QSESolver::QSESolver </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a> &amp;&#160;</td>
+          <td class="paramname"><em>engine</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">SUNContext&#160;</td>
+          <td class="paramname"><em>sun_ctx</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a37c03744aea2c7e16b977c2f6a19691a" name="a37c03744aea2c7e16b977c2f6a19691a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a37c03744aea2c7e16b977c2f6a19691a">&#9670;&#160;</a></span>QSESolver() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::engine::MultiscalePartitioningEngineView::QSESolver::QSESolver </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">QSESolver</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">delete</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a308ee7b77cde2658ea0c1e43827cea49" name="a308ee7b77cde2658ea0c1e43827cea49"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a308ee7b77cde2658ea0c1e43827cea49">&#9670;&#160;</a></span>~QSESolver()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::engine::MultiscalePartitioningEngineView::QSESolver::~QSESolver </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a8759a711c25a587877fbccdebdb9ecd9" name="a8759a711c25a587877fbccdebdb9ecd9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8759a711c25a587877fbccdebdb9ecd9">&#9670;&#160;</a></span>getLogger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">static quill::Logger * gridfire::engine::MultiscalePartitioningEngineView::QSESolver::getLogger </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">static</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a616b818685cc51e0c1926a46435cbb68" name="a616b818685cc51e0c1926a46435cbb68"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a616b818685cc51e0c1926a46435cbb68">&#9670;&#160;</a></span>log_diagnostics()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::MultiscalePartitioningEngineView::QSESolver::log_diagnostics </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">QSEGroup</a> &amp;&#160;</td>
+          <td class="paramname"><em>group</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a338cd55e34af1286f0f4593b04be7508" name="a338cd55e34af1286f0f4593b04be7508"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a338cd55e34af1286f0f4593b04be7508">&#9670;&#160;</a></span>operator=()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">QSESolver</a> &amp; gridfire::engine::MultiscalePartitioningEngineView::QSESolver::operator= </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">QSESolver</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">delete</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aa6f28cf2f5759efad7d428f6794cc151" name="aa6f28cf2f5759efad7d428f6794cc151"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa6f28cf2f5759efad7d428f6794cc151">&#9670;&#160;</a></span>solve()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::composition::Composition gridfire::engine::MultiscalePartitioningEngineView::QSESolver::solve </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a420ca8991dd60fac7a9d18fae0eda0c1" name="a420ca8991dd60fac7a9d18fae0eda0c1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a420ca8991dd60fac7a9d18fae0eda0c1">&#9670;&#160;</a></span>solves()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::engine::MultiscalePartitioningEngineView::QSESolver::solves </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a58b7b2ac01c40084cc839309267e400e" name="a58b7b2ac01c40084cc839309267e400e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a58b7b2ac01c40084cc839309267e400e">&#9670;&#160;</a></span>sys_func()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::engine::MultiscalePartitioningEngineView::QSESolver::sys_func </td>
+          <td>(</td>
+          <td class="paramtype">N_Vector&#160;</td>
+          <td class="paramname"><em>y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector&#160;</td>
+          <td class="paramname"><em>f</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">void *&#160;</td>
+          <td class="paramname"><em>user_data</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a9a34e36baa074c1b39b230e0b5010a82" name="a9a34e36baa074c1b39b230e0b5010a82"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9a34e36baa074c1b39b230e0b5010a82">&#9670;&#160;</a></span>sys_jac()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::engine::MultiscalePartitioningEngineView::QSESolver::sys_jac </td>
+          <td>(</td>
+          <td class="paramtype">N_Vector&#160;</td>
+          <td class="paramname"><em>y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector&#160;</td>
+          <td class="paramname"><em>fy</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">SUNMatrix&#160;</td>
+          <td class="paramname"><em>J</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">void *&#160;</td>
+          <td class="paramname"><em>user_data</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector&#160;</td>
+          <td class="paramname"><em>tmp1</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector&#160;</td>
+          <td class="paramname"><em>tmp2</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a4ca611a4c787c2f79ecd3b900547fac6" name="a4ca611a4c787c2f79ecd3b900547fac6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4ca611a4c787c2f79ecd3b900547fac6">&#9670;&#160;</a></span>m_constraints</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">N_Vector gridfire::engine::MultiscalePartitioningEngineView::QSESolver::m_constraints = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="abea3337e56ce71edf783506ef47a9f50" name="abea3337e56ce71edf783506ef47a9f50"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abea3337e56ce71edf783506ef47a9f50">&#9670;&#160;</a></span>m_engine</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a>&amp; gridfire::engine::MultiscalePartitioningEngineView::QSESolver::m_engine</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a219705d977e7593574e6e5c30fcc417a" name="a219705d977e7593574e6e5c30fcc417a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a219705d977e7593574e6e5c30fcc417a">&#9670;&#160;</a></span>m_f_scale</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">N_Vector gridfire::engine::MultiscalePartitioningEngineView::QSESolver::m_f_scale = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae7a185c468a5aa89fc634564cbad11fb" name="ae7a185c468a5aa89fc634564cbad11fb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae7a185c468a5aa89fc634564cbad11fb">&#9670;&#160;</a></span>m_func_tmpl</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">N_Vector gridfire::engine::MultiscalePartitioningEngineView::QSESolver::m_func_tmpl = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a4015ddf2c8e43f67a92a3f7eb99d7ea8" name="a4015ddf2c8e43f67a92a3f7eb99d7ea8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4015ddf2c8e43f67a92a3f7eb99d7ea8">&#9670;&#160;</a></span>m_has_jacobian</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::MultiscalePartitioningEngineView::QSESolver::m_has_jacobian = false</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="af1f5e08da10ac14cf89ca6cceaf5a107" name="af1f5e08da10ac14cf89ca6cceaf5a107"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af1f5e08da10ac14cf89ca6cceaf5a107">&#9670;&#160;</a></span>m_J</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">SUNMatrix gridfire::engine::MultiscalePartitioningEngineView::QSESolver::m_J = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a3bdbe052602fbe5ef4c5e55234fabc3e" name="a3bdbe052602fbe5ef4c5e55234fabc3e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3bdbe052602fbe5ef4c5e55234fabc3e">&#9670;&#160;</a></span>m_kinsol_mem</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void* gridfire::engine::MultiscalePartitioningEngineView::QSESolver::m_kinsol_mem = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a4da5ce19b4dd8f09d57a21feb002c29e" name="a4da5ce19b4dd8f09d57a21feb002c29e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4da5ce19b4dd8f09d57a21feb002c29e">&#9670;&#160;</a></span>m_LS</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">SUNLinearSolver gridfire::engine::MultiscalePartitioningEngineView::QSESolver::m_LS = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a5da604d8ef9f677e8eda68bda5755274" name="a5da604d8ef9f677e8eda68bda5755274"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5da604d8ef9f677e8eda68bda5755274">&#9670;&#160;</a></span>m_N</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::engine::MultiscalePartitioningEngineView::QSESolver::m_N</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ac545aed391b0396e73dfbef6719d3887" name="ac545aed391b0396e73dfbef6719d3887"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac545aed391b0396e73dfbef6719d3887">&#9670;&#160;</a></span>m_scale</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">N_Vector gridfire::engine::MultiscalePartitioningEngineView::QSESolver::m_scale = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae23a4066b2300223c4d52242c19c2200" name="ae23a4066b2300223c4d52242c19c2200"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae23a4066b2300223c4d52242c19c2200">&#9670;&#160;</a></span>m_solves</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::engine::MultiscalePartitioningEngineView::QSESolver::m_solves = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a6cd6dd07a046bac3d177126be421b723" name="a6cd6dd07a046bac3d177126be421b723"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6cd6dd07a046bac3d177126be421b723">&#9670;&#160;</a></span>m_species</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;fourdst::atomic::Species&gt; gridfire::engine::MultiscalePartitioningEngineView::QSESolver::m_species</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae214780e957d7dd0f17c7cacc604dd7e" name="ae214780e957d7dd0f17c7cacc604dd7e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae214780e957d7dd0f17c7cacc604dd7e">&#9670;&#160;</a></span>m_speciesMap</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;fourdst::atomic::Species, size_t&gt; gridfire::engine::MultiscalePartitioningEngineView::QSESolver::m_speciesMap</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a9c69bae124936b4843876306e9d03860" name="a9c69bae124936b4843876306e9d03860"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9c69bae124936b4843876306e9d03860">&#9670;&#160;</a></span>m_sun_ctx</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">SUNContext gridfire::engine::MultiscalePartitioningEngineView::QSESolver::m_sun_ctx = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ad5d00b0dfeb9dd9ba54f75e8c80f62ab" name="ad5d00b0dfeb9dd9ba54f75e8c80f62ab"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad5d00b0dfeb9dd9ba54f75e8c80f62ab">&#9670;&#160;</a></span>m_Y</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">N_Vector gridfire::engine::MultiscalePartitioningEngineView::QSESolver::m_Y = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/engine/views/<a class="el" href="engine__multiscale_8h.html">engine_multiscale.h</a></li>
+<li>src/lib/engine/views/<a class="el" href="engine__multiscale_8cpp.html">engine_multiscale.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1engine.html">engine</a></li><li class="navelem"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html">MultiscalePartitioningEngineView</a></li><li class="navelem"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">QSESolver</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.js b/docs/html/classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.js
new file mode 100644
index 00000000..760e6abf
--- /dev/null
+++ b/docs/html/classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.js
@@ -0,0 +1,29 @@
+var classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver =
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+  <div class="headertitle"><div class="title">gridfire::engine::NetworkJacobian Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#adb5643398b6f5fbf0ab8f09580b93402">data</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#adc4bcf002e276e36d9d29db7f82015fd">infs</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#ad14ba25ee22e6b0c73e21e19165814e8">m_jacobianMatrix</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#ad30cd63facc761a71d70e60249a22576">m_rank</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#ae5a03ec75859d300f8f63ac465f1206c">m_speciesToIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#aa15b6de68c69b48c57ed1cc943164d32">mapping</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a9292384722bcb0245acab9affcdb8c6d">nans</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#aee558bd90f26fdb6172a04fb63d2572e">NetworkJacobian</a>(const Eigen::SparseMatrix&lt; double &gt; &amp;jacobianMatrix, const std::function&lt; fourdst::atomic::Species(size_t)&gt; &amp;indexToSpeciesFunc)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a78eea5d1a0d09cb30cf0b387924b5179">NetworkJacobian</a>(const NetworkJacobian &amp;jacobian)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#ad215d47784258e42cfbcb45c771aaa19">NetworkJacobian</a>(NetworkJacobian &amp;&amp;jacobian) noexcept</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a2016fcfe27363650817b5be1ce6aaa32">nnz</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a6aef41de3c48ac77ae991ca427ce46a9">operator()</a>(const fourdst::atomic::Species &amp;row, const fourdst::atomic::Species &amp;col) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a3022b0f46c78adb4053b16a425a8b026">operator()</a>(size_t i, size_t j) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#ac5372d721127646e75c0f177661566f9">operator=</a>(NetworkJacobian &amp;&amp;jacobian) noexcept</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#af9544f4cec7b450027fe991614adabfa">rank</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a6fc63f3c5d3fe7a1fd8b0704f2e71e2c">set</a>(const fourdst::atomic::Species &amp;row, const fourdst::atomic::Species &amp;col, double value)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#ac47692fd4cc13174373d2a2f3abd956d">set</a>(size_t i, size_t j, double value)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a82c4fb3d75b1a30e0259ad888bd508cc">set</a>(const JacobianEntry &amp;entry)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a699933e9f807ec196157f92ffb46b9ba">shape</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a485321469d84b3cf923ec79957044406">singular</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a8267f02eacb52d238da6daa19dbea764">to_csv</a>(const std::string &amp;filename) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a></td><td class="entry"></td></tr>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1engine_1_1NetworkJacobian-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::engine::NetworkJacobian Class Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>A wrapper class for handling the network Jacobian matrix.  
+ <a href="classgridfire_1_1engine_1_1NetworkJacobian.html#details">More...</a></p>
+
+<p><code>#include &lt;jacobian.h&gt;</code></p>
+<div class="dynheader">
+Collaboration diagram for gridfire::engine::NetworkJacobian:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1engine_1_1NetworkJacobian__coll__graph.svg" width="263" height="256"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:aee558bd90f26fdb6172a04fb63d2572e" id="r_aee558bd90f26fdb6172a04fb63d2572e"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#aee558bd90f26fdb6172a04fb63d2572e">NetworkJacobian</a> (const Eigen::SparseMatrix&lt; double &gt; &amp;jacobianMatrix, const std::function&lt; fourdst::atomic::Species(size_t)&gt; &amp;indexToSpeciesFunc)</td></tr>
+<tr class="memdesc:aee558bd90f26fdb6172a04fb63d2572e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html" title="A wrapper class for handling the network Jacobian matrix.">NetworkJacobian</a> with the given sparse matrix and species index mapping function.  <br /></td></tr>
+<tr class="separator:aee558bd90f26fdb6172a04fb63d2572e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a78eea5d1a0d09cb30cf0b387924b5179" id="r_a78eea5d1a0d09cb30cf0b387924b5179"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a78eea5d1a0d09cb30cf0b387924b5179">NetworkJacobian</a> (const <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> &amp;jacobian)</td></tr>
+<tr class="memdesc:a78eea5d1a0d09cb30cf0b387924b5179"><td class="mdescLeft">&#160;</td><td class="mdescRight">Copy constructor for <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html" title="A wrapper class for handling the network Jacobian matrix.">NetworkJacobian</a>.  <br /></td></tr>
+<tr class="separator:a78eea5d1a0d09cb30cf0b387924b5179"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad215d47784258e42cfbcb45c771aaa19" id="r_ad215d47784258e42cfbcb45c771aaa19"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#ad215d47784258e42cfbcb45c771aaa19">NetworkJacobian</a> (<a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> &amp;&amp;jacobian) noexcept</td></tr>
+<tr class="memdesc:ad215d47784258e42cfbcb45c771aaa19"><td class="mdescLeft">&#160;</td><td class="mdescRight">Copy assignment operator for <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html" title="A wrapper class for handling the network Jacobian matrix.">NetworkJacobian</a>.  <br /></td></tr>
+<tr class="separator:ad215d47784258e42cfbcb45c771aaa19"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac5372d721127646e75c0f177661566f9" id="r_ac5372d721127646e75c0f177661566f9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#ac5372d721127646e75c0f177661566f9">operator=</a> (<a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> &amp;&amp;jacobian) noexcept</td></tr>
+<tr class="memdesc:ac5372d721127646e75c0f177661566f9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Move constructor for <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html" title="A wrapper class for handling the network Jacobian matrix.">NetworkJacobian</a>.  <br /></td></tr>
+<tr class="separator:ac5372d721127646e75c0f177661566f9"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a6aef41de3c48ac77ae991ca427ce46a9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Accesses the value at the specified row and column corresponding to the given species.  <br /></td></tr>
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+<tr class="memdesc:a3022b0f46c78adb4053b16a425a8b026"><td class="mdescLeft">&#160;</td><td class="mdescRight">Accesses the value at the specified row and column indices.  <br /></td></tr>
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+<tr class="separator:ac47692fd4cc13174373d2a2f3abd956d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a82c4fb3d75b1a30e0259ad888bd508cc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sets the value in the Jacobian matrix based on a JacobianEntry.  <br /></td></tr>
+<tr class="separator:a82c4fb3d75b1a30e0259ad888bd508cc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a699933e9f807ec196157f92ffb46b9ba" id="r_a699933e9f807ec196157f92ffb46b9ba"><td class="memItemLeft" align="right" valign="top">std::tuple&lt; size_t, size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a699933e9f807ec196157f92ffb46b9ba">shape</a> () const</td></tr>
+<tr class="memdesc:a699933e9f807ec196157f92ffb46b9ba"><td class="mdescLeft">&#160;</td><td class="mdescRight">Retrieves the shape of the Jacobian matrix as a tuple (rows, columns).  <br /></td></tr>
+<tr class="separator:a699933e9f807ec196157f92ffb46b9ba"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:af9544f4cec7b450027fe991614adabfa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Retrieves the rank of the Jacobian matrix.  <br /></td></tr>
+<tr class="separator:af9544f4cec7b450027fe991614adabfa"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2016fcfe27363650817b5be1ce6aaa32" id="r_a2016fcfe27363650817b5be1ce6aaa32"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a2016fcfe27363650817b5be1ce6aaa32">nnz</a> () const</td></tr>
+<tr class="memdesc:a2016fcfe27363650817b5be1ce6aaa32"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the number of non-zero entries in the Jacobian matrix.  <br /></td></tr>
+<tr class="separator:a2016fcfe27363650817b5be1ce6aaa32"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a485321469d84b3cf923ec79957044406" id="r_a485321469d84b3cf923ec79957044406"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a485321469d84b3cf923ec79957044406">singular</a> () const</td></tr>
+<tr class="memdesc:a485321469d84b3cf923ec79957044406"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the Jacobian matrix is singular.  <br /></td></tr>
+<tr class="separator:a485321469d84b3cf923ec79957044406"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adc4bcf002e276e36d9d29db7f82015fd" id="r_adc4bcf002e276e36d9d29db7f82015fd"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="namespacegridfire_1_1engine.html#ac7974616b5fd465c4a42e3d882cdde6e">JacobianEntry</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#adc4bcf002e276e36d9d29db7f82015fd">infs</a> () const</td></tr>
+<tr class="memdesc:adc4bcf002e276e36d9d29db7f82015fd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Retrieves all entries in the Jacobian matrix that are infinite.  <br /></td></tr>
+<tr class="separator:adc4bcf002e276e36d9d29db7f82015fd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9292384722bcb0245acab9affcdb8c6d" id="r_a9292384722bcb0245acab9affcdb8c6d"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="namespacegridfire_1_1engine.html#ac7974616b5fd465c4a42e3d882cdde6e">JacobianEntry</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a9292384722bcb0245acab9affcdb8c6d">nans</a> () const</td></tr>
+<tr class="memdesc:a9292384722bcb0245acab9affcdb8c6d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Retrieves all entries in the Jacobian matrix that are NaN (Not a Number).  <br /></td></tr>
+<tr class="separator:a9292384722bcb0245acab9affcdb8c6d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adb5643398b6f5fbf0ab8f09580b93402" id="r_adb5643398b6f5fbf0ab8f09580b93402"><td class="memItemLeft" align="right" valign="top">Eigen::SparseMatrix&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#adb5643398b6f5fbf0ab8f09580b93402">data</a> () const</td></tr>
+<tr class="memdesc:adb5643398b6f5fbf0ab8f09580b93402"><td class="mdescLeft">&#160;</td><td class="mdescRight">Provides access to the underlying sparse matrix data.  <br /></td></tr>
+<tr class="separator:adb5643398b6f5fbf0ab8f09580b93402"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa15b6de68c69b48c57ed1cc943164d32" id="r_aa15b6de68c69b48c57ed1cc943164d32"><td class="memItemLeft" align="right" valign="top">const std::unordered_map&lt; fourdst::atomic::Species, size_t &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#aa15b6de68c69b48c57ed1cc943164d32">mapping</a> () const</td></tr>
+<tr class="memdesc:aa15b6de68c69b48c57ed1cc943164d32"><td class="mdescLeft">&#160;</td><td class="mdescRight">Provides access to the species-to-index mapping.  <br /></td></tr>
+<tr class="separator:aa15b6de68c69b48c57ed1cc943164d32"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8267f02eacb52d238da6daa19dbea764" id="r_a8267f02eacb52d238da6daa19dbea764"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a8267f02eacb52d238da6daa19dbea764">to_csv</a> (const std::string &amp;filename) const</td></tr>
+<tr class="memdesc:a8267f02eacb52d238da6daa19dbea764"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exports the Jacobian matrix to a CSV file.  <br /></td></tr>
+<tr class="separator:a8267f02eacb52d238da6daa19dbea764"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:ad14ba25ee22e6b0c73e21e19165814e8" id="r_ad14ba25ee22e6b0c73e21e19165814e8"><td class="memItemLeft" align="right" valign="top">Eigen::SparseMatrix&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#ad14ba25ee22e6b0c73e21e19165814e8">m_jacobianMatrix</a></td></tr>
+<tr class="separator:ad14ba25ee22e6b0c73e21e19165814e8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae5a03ec75859d300f8f63ac465f1206c" id="r_ae5a03ec75859d300f8f63ac465f1206c"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; fourdst::atomic::Species, size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#ae5a03ec75859d300f8f63ac465f1206c">m_speciesToIndexMap</a></td></tr>
+<tr class="separator:ae5a03ec75859d300f8f63ac465f1206c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad30cd63facc761a71d70e60249a22576" id="r_ad30cd63facc761a71d70e60249a22576"><td class="memItemLeft" align="right" valign="top">std::optional&lt; size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#ad30cd63facc761a71d70e60249a22576">m_rank</a> = std::nullopt</td></tr>
+<tr class="separator:ad30cd63facc761a71d70e60249a22576"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>A wrapper class for handling the network Jacobian matrix. </p>
+<p>This class encapsulates an Eigen::SparseMatrix to represent the Jacobian matrix of a reaction network. It provides methods for accessing and modifying matrix entries using species identifiers, as well as utility functions for analyzing the matrix (e.g., checking for singularity, counting non-zero entries). </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="aee558bd90f26fdb6172a04fb63d2572e" name="aee558bd90f26fdb6172a04fb63d2572e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aee558bd90f26fdb6172a04fb63d2572e">&#9670;&#160;</a></span>NetworkJacobian() <span class="overload">[1/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::engine::NetworkJacobian::NetworkJacobian </td>
+          <td>(</td>
+          <td class="paramtype">const Eigen::SparseMatrix&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>jacobianMatrix</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::function&lt; fourdst::atomic::Species(size_t)&gt; &amp;&#160;</td>
+          <td class="paramname"><em>indexToSpeciesFunc</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructs a <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html" title="A wrapper class for handling the network Jacobian matrix.">NetworkJacobian</a> with the given sparse matrix and species index mapping function. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">jacobianMatrix</td><td>The sparse matrix representing the Jacobian. </td></tr>
+    <tr><td class="paramname">indexToSpeciesFunc</td><td>A function that maps matrix indices to species identifiers. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a78eea5d1a0d09cb30cf0b387924b5179" name="a78eea5d1a0d09cb30cf0b387924b5179"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a78eea5d1a0d09cb30cf0b387924b5179">&#9670;&#160;</a></span>NetworkJacobian() <span class="overload">[2/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::engine::NetworkJacobian::NetworkJacobian </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> &amp;&#160;</td>
+          <td class="paramname"><em>jacobian</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Copy constructor for <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html" title="A wrapper class for handling the network Jacobian matrix.">NetworkJacobian</a>. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">jacobian</td><td>The <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html" title="A wrapper class for handling the network Jacobian matrix.">NetworkJacobian</a> instance to copy from. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="ad215d47784258e42cfbcb45c771aaa19" name="ad215d47784258e42cfbcb45c771aaa19"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad215d47784258e42cfbcb45c771aaa19">&#9670;&#160;</a></span>NetworkJacobian() <span class="overload">[3/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::engine::NetworkJacobian::NetworkJacobian </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> &amp;&amp;&#160;</td>
+          <td class="paramname"><em>jacobian</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">noexcept</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Copy assignment operator for <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html" title="A wrapper class for handling the network Jacobian matrix.">NetworkJacobian</a>. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">jacobian</td><td>The <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html" title="A wrapper class for handling the network Jacobian matrix.">NetworkJacobian</a> instance to copy from. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Reference to the assigned <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html" title="A wrapper class for handling the network Jacobian matrix.">NetworkJacobian</a> instance. </dd></dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="adb5643398b6f5fbf0ab8f09580b93402" name="adb5643398b6f5fbf0ab8f09580b93402"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adb5643398b6f5fbf0ab8f09580b93402">&#9670;&#160;</a></span>data()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">Eigen::SparseMatrix&lt; double &gt; gridfire::engine::NetworkJacobian::data </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Provides access to the underlying sparse matrix data. </p>
+<dl class="section return"><dt>Returns</dt><dd>The Eigen::SparseMatrix representing the Jacobian. </dd></dl>
+
+</div>
+</div>
+<a id="adc4bcf002e276e36d9d29db7f82015fd" name="adc4bcf002e276e36d9d29db7f82015fd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adc4bcf002e276e36d9d29db7f82015fd">&#9670;&#160;</a></span>infs()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; <a class="el" href="namespacegridfire_1_1engine.html#ac7974616b5fd465c4a42e3d882cdde6e">JacobianEntry</a> &gt; gridfire::engine::NetworkJacobian::infs </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Retrieves all entries in the Jacobian matrix that are infinite. </p>
+<dl class="section return"><dt>Returns</dt><dd>A vector of JacobianEntry representing infinite entries. </dd></dl>
+
+</div>
+</div>
+<a id="aa15b6de68c69b48c57ed1cc943164d32" name="aa15b6de68c69b48c57ed1cc943164d32"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa15b6de68c69b48c57ed1cc943164d32">&#9670;&#160;</a></span>mapping()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::unordered_map&lt; fourdst::atomic::Species, size_t &gt; &amp; gridfire::engine::NetworkJacobian::mapping </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Provides access to the species-to-index mapping. </p>
+<dl class="section return"><dt>Returns</dt><dd>A constant reference to the species-to-index mapping. </dd></dl>
+
+</div>
+</div>
+<a id="a9292384722bcb0245acab9affcdb8c6d" name="a9292384722bcb0245acab9affcdb8c6d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9292384722bcb0245acab9affcdb8c6d">&#9670;&#160;</a></span>nans()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; <a class="el" href="namespacegridfire_1_1engine.html#ac7974616b5fd465c4a42e3d882cdde6e">JacobianEntry</a> &gt; gridfire::engine::NetworkJacobian::nans </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Retrieves all entries in the Jacobian matrix that are NaN (Not a Number). </p>
+<dl class="section return"><dt>Returns</dt><dd>A vector of JacobianEntry representing NaN entries. </dd></dl>
+
+</div>
+</div>
+<a id="a2016fcfe27363650817b5be1ce6aaa32" name="a2016fcfe27363650817b5be1ce6aaa32"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2016fcfe27363650817b5be1ce6aaa32">&#9670;&#160;</a></span>nnz()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::engine::NetworkJacobian::nnz </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Get the number of non-zero entries in the Jacobian matrix. </p>
+<dl class="section return"><dt>Returns</dt><dd>The number of non-zero entries. </dd></dl>
+
+</div>
+</div>
+<a id="a6aef41de3c48ac77ae991ca427ce46a9" name="a6aef41de3c48ac77ae991ca427ce46a9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6aef41de3c48ac77ae991ca427ce46a9">&#9670;&#160;</a></span>operator()() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::engine::NetworkJacobian::operator() </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>row</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>col</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Accesses the value at the specified row and column corresponding to the given species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">row</td><td>Species for the row </td></tr>
+    <tr><td class="paramname">col</td><td>Species for the column </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>value at the specified position </dd></dl>
+
+</div>
+</div>
+<a id="a3022b0f46c78adb4053b16a425a8b026" name="a3022b0f46c78adb4053b16a425a8b026"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3022b0f46c78adb4053b16a425a8b026">&#9670;&#160;</a></span>operator()() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::engine::NetworkJacobian::operator() </td>
+          <td>(</td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>i</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>j</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Accesses the value at the specified row and column indices. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">i</td><td>Row index </td></tr>
+    <tr><td class="paramname">j</td><td>Column index </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>value at the specified position </dd></dl>
+
+</div>
+</div>
+<a id="ac5372d721127646e75c0f177661566f9" name="ac5372d721127646e75c0f177661566f9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac5372d721127646e75c0f177661566f9">&#9670;&#160;</a></span>operator=()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> &amp; gridfire::engine::NetworkJacobian::operator= </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> &amp;&amp;&#160;</td>
+          <td class="paramname"><em>jacobian</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">noexcept</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Move constructor for <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html" title="A wrapper class for handling the network Jacobian matrix.">NetworkJacobian</a>. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">jacobian</td><td>The <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html" title="A wrapper class for handling the network Jacobian matrix.">NetworkJacobian</a> instance to move from. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Reference to the assigned <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html" title="A wrapper class for handling the network Jacobian matrix.">NetworkJacobian</a> instance. </dd></dl>
+
+</div>
+</div>
+<a id="af9544f4cec7b450027fe991614adabfa" name="af9544f4cec7b450027fe991614adabfa"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af9544f4cec7b450027fe991614adabfa">&#9670;&#160;</a></span>rank()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::engine::NetworkJacobian::rank </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Retrieves the rank of the Jacobian matrix. </p>
+<dl class="section return"><dt>Returns</dt><dd>The rank of the matrix. </dd></dl>
+<dl class="section note"><dt>Note</dt><dd>Rank is computed using QR decomposition and cached for efficiency. The rank is computed the first time this method is called and stored for subsequent calls. If any set operation is performed on the matrix, the cached rank is invalidated. </dd></dl>
+
+</div>
+</div>
+<a id="a6fc63f3c5d3fe7a1fd8b0704f2e71e2c" name="a6fc63f3c5d3fe7a1fd8b0704f2e71e2c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6fc63f3c5d3fe7a1fd8b0704f2e71e2c">&#9670;&#160;</a></span>set() <span class="overload">[1/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::NetworkJacobian::set </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>row</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>col</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>value</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Sets the value at the specified row and column corresponding to the given species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">row</td><td>Row species </td></tr>
+    <tr><td class="paramname">col</td><td>Column species </td></tr>
+    <tr><td class="paramname">value</td><td>Value to set </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a82c4fb3d75b1a30e0259ad888bd508cc" name="a82c4fb3d75b1a30e0259ad888bd508cc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a82c4fb3d75b1a30e0259ad888bd508cc">&#9670;&#160;</a></span>set() <span class="overload">[2/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::NetworkJacobian::set </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1engine.html#ac7974616b5fd465c4a42e3d882cdde6e">JacobianEntry</a> &amp;&#160;</td>
+          <td class="paramname"><em>entry</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Sets the value in the Jacobian matrix based on a JacobianEntry. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">entry</td><td>The JacobianEntry containing row species, column species, and value. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="ac47692fd4cc13174373d2a2f3abd956d" name="ac47692fd4cc13174373d2a2f3abd956d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac47692fd4cc13174373d2a2f3abd956d">&#9670;&#160;</a></span>set() <span class="overload">[3/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::NetworkJacobian::set </td>
+          <td>(</td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>i</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>j</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>value</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Sets the value at the specified row and column indices. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">i</td><td>Row index </td></tr>
+    <tr><td class="paramname">j</td><td>Column index </td></tr>
+    <tr><td class="paramname">value</td><td>Value to set </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a699933e9f807ec196157f92ffb46b9ba" name="a699933e9f807ec196157f92ffb46b9ba"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a699933e9f807ec196157f92ffb46b9ba">&#9670;&#160;</a></span>shape()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::tuple&lt; size_t, size_t &gt; gridfire::engine::NetworkJacobian::shape </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Retrieves the shape of the Jacobian matrix as a tuple (rows, columns). </p>
+<dl class="section return"><dt>Returns</dt><dd>A tuple containing the number of rows and columns. </dd></dl>
+
+</div>
+</div>
+<a id="a485321469d84b3cf923ec79957044406" name="a485321469d84b3cf923ec79957044406"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a485321469d84b3cf923ec79957044406">&#9670;&#160;</a></span>singular()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::NetworkJacobian::singular </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Checks if the Jacobian matrix is singular. </p>
+<dl class="section return"><dt>Returns</dt><dd>True if the matrix is singular, false otherwise. </dd></dl>
+
+</div>
+</div>
+<a id="a8267f02eacb52d238da6daa19dbea764" name="a8267f02eacb52d238da6daa19dbea764"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8267f02eacb52d238da6daa19dbea764">&#9670;&#160;</a></span>to_csv()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::engine::NetworkJacobian::to_csv </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>filename</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Exports the Jacobian matrix to a CSV file. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">filename</td><td>The name of the CSV file to export to. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="ad14ba25ee22e6b0c73e21e19165814e8" name="ad14ba25ee22e6b0c73e21e19165814e8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad14ba25ee22e6b0c73e21e19165814e8">&#9670;&#160;</a></span>m_jacobianMatrix</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">Eigen::SparseMatrix&lt;double&gt; gridfire::engine::NetworkJacobian::m_jacobianMatrix</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ad30cd63facc761a71d70e60249a22576" name="ad30cd63facc761a71d70e60249a22576"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad30cd63facc761a71d70e60249a22576">&#9670;&#160;</a></span>m_rank</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::optional&lt;size_t&gt; gridfire::engine::NetworkJacobian::m_rank = std::nullopt</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae5a03ec75859d300f8f63ac465f1206c" name="ae5a03ec75859d300f8f63ac465f1206c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae5a03ec75859d300f8f63ac465f1206c">&#9670;&#160;</a></span>m_speciesToIndexMap</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;fourdst::atomic::Species, size_t&gt; gridfire::engine::NetworkJacobian::m_speciesToIndexMap</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/engine/types/<a class="el" href="jacobian_8h.html">jacobian.h</a></li>
+<li>src/lib/engine/types/<a class="el" href="jacobian_8cpp.html">jacobian.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1engine.html">engine</a></li><li class="navelem"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
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index 00000000..7c2d81c3
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+var classgridfire_1_1engine_1_1NetworkJacobian =
+[
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+    [ "infs", "classgridfire_1_1engine_1_1NetworkJacobian.html#adc4bcf002e276e36d9d29db7f82015fd", null ],
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+    [ "nans", "classgridfire_1_1engine_1_1NetworkJacobian.html#a9292384722bcb0245acab9affcdb8c6d", null ],
+    [ "nnz", "classgridfire_1_1engine_1_1NetworkJacobian.html#a2016fcfe27363650817b5be1ce6aaa32", null ],
+    [ "operator()", "classgridfire_1_1engine_1_1NetworkJacobian.html#a6aef41de3c48ac77ae991ca427ce46a9", null ],
+    [ "operator()", "classgridfire_1_1engine_1_1NetworkJacobian.html#a3022b0f46c78adb4053b16a425a8b026", null ],
+    [ "operator=", "classgridfire_1_1engine_1_1NetworkJacobian.html#ac5372d721127646e75c0f177661566f9", null ],
+    [ "rank", "classgridfire_1_1engine_1_1NetworkJacobian.html#af9544f4cec7b450027fe991614adabfa", null ],
+    [ "set", "classgridfire_1_1engine_1_1NetworkJacobian.html#a6fc63f3c5d3fe7a1fd8b0704f2e71e2c", null ],
+    [ "set", "classgridfire_1_1engine_1_1NetworkJacobian.html#a82c4fb3d75b1a30e0259ad888bd508cc", null ],
+    [ "set", "classgridfire_1_1engine_1_1NetworkJacobian.html#ac47692fd4cc13174373d2a2f3abd956d", null ],
+    [ "shape", "classgridfire_1_1engine_1_1NetworkJacobian.html#a699933e9f807ec196157f92ffb46b9ba", null ],
+    [ "singular", "classgridfire_1_1engine_1_1NetworkJacobian.html#a485321469d84b3cf923ec79957044406", null ],
+    [ "to_csv", "classgridfire_1_1engine_1_1NetworkJacobian.html#a8267f02eacb52d238da6daa19dbea764", null ],
+    [ "m_jacobianMatrix", "classgridfire_1_1engine_1_1NetworkJacobian.html#ad14ba25ee22e6b0c73e21e19165814e8", null ],
+    [ "m_rank", "classgridfire_1_1engine_1_1NetworkJacobian.html#ad30cd63facc761a71d70e60249a22576", null ],
+    [ "m_speciesToIndexMap", "classgridfire_1_1engine_1_1NetworkJacobian.html#ae5a03ec75859d300f8f63ac465f1206c", null ]
+];
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diff --git a/docs/html/classgridfire_1_1engine_1_1NetworkPrimingEngineView-members.html b/docs/html/classgridfire_1_1engine_1_1NetworkPrimingEngineView-members.html
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <div class="headertitle"><div class="title">gridfire::engine::NetworkPrimingEngineView Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html">gridfire::engine::NetworkPrimingEngineView</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a2a866a7ba9572d36efab8efe72a063f5">calculateEpsDerivatives</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a2f0ad1febc467bce87b5c6ad29b059fb">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a82cbef591ef1aafcb9a42e01bf38fc38">calculateRHSAndEnergy</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a38191e2b3b219d348eba0109dce271c3">collect</a>(const std::vector&lt; std::string &gt; &amp;peNames)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a25dc44af1a58561b665103b16abe9bbc">collectComposition</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#acaf9433246a58f2365c5bd8907cbacbb">constructPrimingReactionSet</a>(const fourdst::atomic::Species &amp;primingSpecies, const GraphEngine &amp;baseEngine) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html">gridfire::engine::NetworkPrimingEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a8464c50142f34583201c4abc7fbcba36">constructReactionIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a20b54c8b13616982eddb3ae3979b842d">constructSpeciesIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ada2f326789dc8ae8305617c8d700ae05">DefinedEngineView</a>(const std::vector&lt; std::string &gt; &amp;peNames, GraphEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a4d90439d99da61107d95319b970760bc">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a4966f8cbc859ce2a8a465516d0c0abd0">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const std::vector&lt; fourdst::atomic::Species &gt; &amp;activeSpecies) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a1de5867a0e633de0d0d96ac4fbb141e5">generateJacobianMatrix</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#af4049e5570bd143d41cab1d4005b6824">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ab6f82ef31b99bfe8a6c4e475bcdb96f8">getBaseEngine</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ac5a0def6b6af0bd93bf9057c25f048ff">getDepth</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a81732c1b2d08451849c1ddf833246892">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a0af3e1ac0314a485171f1dda39929cb4">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a413b111f6a643d7aecbae01dd0f82640">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ab051d976dbecf325747d54efe7834d04">getSpeciesDestructionTimescales</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#afb3c67ce20746b9acb2766920b8f397b">getSpeciesIndex</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a65af092785759559f4697c7e66bef2e3">getSpeciesStatus</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a1edda1a27247480660cf7a63410f5799">getSpeciesTimescales</a>(const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a600dd38a6011089527024f1625130935">getStoichiometryMatrixEntry</a>(const fourdst::atomic::Species &amp;species, const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a6ef3052fce2d5e4fdaec6659df64c2bc">isStale</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ae8ac4dc44a6c9f3588d6dd02b39a4cc9">m_activeReactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#aad986ed7c9602ba042999cf0a30ed70c">m_activeSpecies</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#add093054fe3ba60f99b04f7f3bda4ba3">m_activeSpeciesVectorCache</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a1e46935f049537e675fb132564d6eacd">m_baseEngine</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a3156dfef68cd3636f8cf7a13b5388e75">m_isStale</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#af5d4b8d6b11e83d57d6e08b12ce5882d">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html">gridfire::engine::NetworkPrimingEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#ad78f293f31a7ff8120b85e26e5d6dcfd">m_primingSpecies</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html">gridfire::engine::NetworkPrimingEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#aa9a26262300b0982b847a72425dc373a">m_reactionIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a26af4be40216ee3ea5b7fff49fe7a00c">m_speciesIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a391bc4b5d946ea606cf7661955191d12">mapFullToView</a>(const std::vector&lt; double &gt; &amp;full) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#aa053696a7885b8e42562b2d22ee32d84">mapNetInToMolarAbundanceVector</a>(const NetIn &amp;netIn) const override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#aa352f3ba0e689d3f81711c17f4f67dfc">mapViewToFull</a>(const std::vector&lt; double &gt; &amp;defined) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#afa9aeb6d11645e4b9cecf56fb63b51ef">mapViewToFullReactionIndex</a>(size_t definedReactionIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ad6986fa5cda1d9ed9d4f54f444f402e8">mapViewToFullSpeciesIndex</a>(size_t definedSpeciesIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#ad4eec8af1ab1f918fd4e92fac47adaf4">NetworkPrimingEngineView</a>(const std::string &amp;primingSymbol, GraphEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html">gridfire::engine::NetworkPrimingEngineView</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#a0d505b967dc3b50f6966a0110e53a6d7">NetworkPrimingEngineView</a>(const fourdst::atomic::Species &amp;primingSpecies, GraphEngine &amp;baseEngine)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html">gridfire::engine::NetworkPrimingEngineView</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a2bc32a84c9f5372587fca92f2da77595">primeEngine</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a2444b9ed3bc61920ce23c546444269e4">rebuild</a>(const fourdst::composition::CompositionAbstract &amp;comp, BuildDepthType depth)</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ae89529e13f2b7fd2febcfa5af40d4666">setNetworkReactions</a>(const reaction::ReactionSet &amp;reactions) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a68bd0e51d3e127e5f9fd74fdb8180fd9">setScreeningModel</a>(screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a1d99b55bf8e94bc2397715aa1f916733">update</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a91ea88e43c17f99ff0d95a8f54b09cbf">validateNetworkState</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html#af0ea99416c28933d364a872fc6aff556">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1Engine.html">gridfire::engine::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a17d63e853d6efca31064e9147c80d497">~EngineView</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html">gridfire::engine::EngineView&lt; DynamicEngine &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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diff --git a/docs/html/classgridfire_1_1engine_1_1NetworkPrimingEngineView.html b/docs/html/classgridfire_1_1engine_1_1NetworkPrimingEngineView.html
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+<title>GridFire: gridfire::engine::NetworkPrimingEngineView Class Reference</title>
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1engine_1_1NetworkPrimingEngineView-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::engine::NetworkPrimingEngineView Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Provides a view of a <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> filtered to reactions involving a specified priming species.  
+ <a href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#details">More...</a></p>
+
+<p><code>#include &lt;engine_priming.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::engine::NetworkPrimingEngineView:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1engine_1_1NetworkPrimingEngineView__inherit__graph.svg" width="408" height="300"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::engine::NetworkPrimingEngineView:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1engine_1_1NetworkPrimingEngineView__coll__graph.svg" width="100%" height="600"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:ad4eec8af1ab1f918fd4e92fac47adaf4" id="r_ad4eec8af1ab1f918fd4e92fac47adaf4"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#ad4eec8af1ab1f918fd4e92fac47adaf4">NetworkPrimingEngineView</a> (const std::string &amp;primingSymbol, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a> &amp;baseEngine)</td></tr>
+<tr class="memdesc:ad4eec8af1ab1f918fd4e92fac47adaf4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs the view by looking up the priming species by symbol.  <br /></td></tr>
+<tr class="separator:ad4eec8af1ab1f918fd4e92fac47adaf4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0d505b967dc3b50f6966a0110e53a6d7" id="r_a0d505b967dc3b50f6966a0110e53a6d7"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#a0d505b967dc3b50f6966a0110e53a6d7">NetworkPrimingEngineView</a> (const fourdst::atomic::Species &amp;primingSpecies, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a> &amp;baseEngine)</td></tr>
+<tr class="memdesc:a0d505b967dc3b50f6966a0110e53a6d7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs the view using an existing Species object.  <br /></td></tr>
+<tr class="separator:a0d505b967dc3b50f6966a0110e53a6d7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1engine_1_1DefinedEngineView"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1engine_1_1DefinedEngineView')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td></tr>
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+<tr class="memitem:a81732c1b2d08451849c1ddf833246892 inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView" id="r_a81732c1b2d08451849c1ddf833246892"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a81732c1b2d08451849c1ddf833246892">getNetworkReactions</a> () const override</td></tr>
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+<tr class="separator:aa053696a7885b8e42562b2d22ee32d84 inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2bc32a84c9f5372587fca92f2da77595 inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView" id="r_a2bc32a84c9f5372587fca92f2da77595"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html">PrimingReport</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a2bc32a84c9f5372587fca92f2da77595">primeEngine</a> (const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;netIn) override</td></tr>
+<tr class="memdesc:a2bc32a84c9f5372587fca92f2da77595 inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView"><td class="mdescLeft">&#160;</td><td class="mdescRight">Prime the engine view for calculations. This will delegate to the base engine.  <br /></td></tr>
+<tr class="separator:a2bc32a84c9f5372587fca92f2da77595 inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a25dc44af1a58561b665103b16abe9bbc inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView" id="r_a25dc44af1a58561b665103b16abe9bbc"><td class="memItemLeft" align="right" valign="top">fourdst::composition::Composition&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a25dc44af1a58561b665103b16abe9bbc">collectComposition</a> (const fourdst::composition::CompositionAbstract &amp;comp, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a25dc44af1a58561b665103b16abe9bbc inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView"><td class="mdescLeft">&#160;</td><td class="mdescRight">Collects a Composition object from the base engine.  <br /></td></tr>
+<tr class="separator:a25dc44af1a58561b665103b16abe9bbc inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a65af092785759559f4697c7e66bef2e3 inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView" id="r_a65af092785759559f4697c7e66bef2e3"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1engine.html#a83c9d755597668bba3cf00cd0ea10ee3">SpeciesStatus</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a65af092785759559f4697c7e66bef2e3">getSpeciesStatus</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a65af092785759559f4697c7e66bef2e3 inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the status of a species in the active network.  <br /></td></tr>
+<tr class="separator:a65af092785759559f4697c7e66bef2e3 inherit pub_methods_classgridfire_1_1engine_1_1DefinedEngineView"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1engine_1_1DynamicEngine"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1engine_1_1DynamicEngine')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></td></tr>
+<tr class="memitem:ac5a0def6b6af0bd93bf9057c25f048ff inherit pub_methods_classgridfire_1_1engine_1_1DynamicEngine" id="r_ac5a0def6b6af0bd93bf9057c25f048ff"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">BuildDepthType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ac5a0def6b6af0bd93bf9057c25f048ff">getDepth</a> () const</td></tr>
+<tr class="memdesc:ac5a0def6b6af0bd93bf9057c25f048ff inherit pub_methods_classgridfire_1_1engine_1_1DynamicEngine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the depth of the network.  <br /></td></tr>
+<tr class="separator:ac5a0def6b6af0bd93bf9057c25f048ff inherit pub_methods_classgridfire_1_1engine_1_1DynamicEngine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2444b9ed3bc61920ce23c546444269e4 inherit pub_methods_classgridfire_1_1engine_1_1DynamicEngine" id="r_a2444b9ed3bc61920ce23c546444269e4"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a2444b9ed3bc61920ce23c546444269e4">rebuild</a> (const fourdst::composition::CompositionAbstract &amp;comp, <a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">BuildDepthType</a> depth)</td></tr>
+<tr class="memdesc:a2444b9ed3bc61920ce23c546444269e4 inherit pub_methods_classgridfire_1_1engine_1_1DynamicEngine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Rebuild the network with a specified depth.  <br /></td></tr>
+<tr class="separator:a2444b9ed3bc61920ce23c546444269e4 inherit pub_methods_classgridfire_1_1engine_1_1DynamicEngine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1engine_1_1Engine"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1engine_1_1Engine')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1engine_1_1Engine.html">gridfire::engine::Engine</a></td></tr>
+<tr class="memitem:af0ea99416c28933d364a872fc6aff556 inherit pub_methods_classgridfire_1_1engine_1_1Engine" id="r_af0ea99416c28933d364a872fc6aff556"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1Engine.html#af0ea99416c28933d364a872fc6aff556">~Engine</a> ()=default</td></tr>
+<tr class="memdesc:af0ea99416c28933d364a872fc6aff556 inherit pub_methods_classgridfire_1_1engine_1_1Engine"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:af0ea99416c28933d364a872fc6aff556 inherit pub_methods_classgridfire_1_1engine_1_1Engine"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1engine_1_1EngineView"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1engine_1_1EngineView')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1engine_1_1EngineView.html">gridfire::engine::EngineView&lt; DynamicEngine &gt;</a></td></tr>
+<tr class="memitem:a17d63e853d6efca31064e9147c80d497 inherit pub_methods_classgridfire_1_1engine_1_1EngineView" id="r_a17d63e853d6efca31064e9147c80d497"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a17d63e853d6efca31064e9147c80d497">~EngineView</a> ()=default</td></tr>
+<tr class="memdesc:a17d63e853d6efca31064e9147c80d497 inherit pub_methods_classgridfire_1_1engine_1_1EngineView"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:a17d63e853d6efca31064e9147c80d497 inherit pub_methods_classgridfire_1_1engine_1_1EngineView"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:acaf9433246a58f2365c5bd8907cbacbb" id="r_acaf9433246a58f2365c5bd8907cbacbb"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::string &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#acaf9433246a58f2365c5bd8907cbacbb">constructPrimingReactionSet</a> (const fourdst::atomic::Species &amp;primingSpecies, const <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a> &amp;baseEngine) const</td></tr>
+<tr class="memdesc:acaf9433246a58f2365c5bd8907cbacbb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs the set of reaction names that involve the priming species.  <br /></td></tr>
+<tr class="separator:acaf9433246a58f2365c5bd8907cbacbb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:af5d4b8d6b11e83d57d6e08b12ce5882d" id="r_af5d4b8d6b11e83d57d6e08b12ce5882d"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#af5d4b8d6b11e83d57d6e08b12ce5882d">m_logger</a> = LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="separator:af5d4b8d6b11e83d57d6e08b12ce5882d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad78f293f31a7ff8120b85e26e5d6dcfd" id="r_ad78f293f31a7ff8120b85e26e5d6dcfd"><td class="memItemLeft" align="right" valign="top">fourdst::atomic::Species&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#ad78f293f31a7ff8120b85e26e5d6dcfd">m_primingSpecies</a></td></tr>
+<tr class="memdesc:ad78f293f31a7ff8120b85e26e5d6dcfd"><td class="mdescLeft">&#160;</td><td class="mdescRight">The priming species, if specified.  <br /></td></tr>
+<tr class="separator:ad78f293f31a7ff8120b85e26e5d6dcfd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pro_attribs_classgridfire_1_1engine_1_1DefinedEngineView"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classgridfire_1_1engine_1_1DefinedEngineView')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html">gridfire::engine::DefinedEngineView</a></td></tr>
+<tr class="memitem:a3156dfef68cd3636f8cf7a13b5388e75 inherit pro_attribs_classgridfire_1_1engine_1_1DefinedEngineView" id="r_a3156dfef68cd3636f8cf7a13b5388e75"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a3156dfef68cd3636f8cf7a13b5388e75">m_isStale</a> = true</td></tr>
+<tr class="separator:a3156dfef68cd3636f8cf7a13b5388e75 inherit pro_attribs_classgridfire_1_1engine_1_1DefinedEngineView"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1e46935f049537e675fb132564d6eacd inherit pro_attribs_classgridfire_1_1engine_1_1DefinedEngineView" id="r_a1e46935f049537e675fb132564d6eacd"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a1e46935f049537e675fb132564d6eacd">m_baseEngine</a></td></tr>
+<tr class="separator:a1e46935f049537e675fb132564d6eacd inherit pro_attribs_classgridfire_1_1engine_1_1DefinedEngineView"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Provides a view of a <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> filtered to reactions involving a specified priming species. </p>
+<p>This view constructs a subset of the network reactions from the base engine that contain the given priming species and delegates all engine operations to the underlying engine.</p>
+<p>See implementation in <a class="el" href="engine__priming_8cpp.html">engine_priming.cpp</a> for details on reaction set construction.</p>
+<dl class="section note"><dt>Note</dt><dd>Throws std::runtime_error if no priming reactions are found for the species. </dd></dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="ad4eec8af1ab1f918fd4e92fac47adaf4" name="ad4eec8af1ab1f918fd4e92fac47adaf4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad4eec8af1ab1f918fd4e92fac47adaf4">&#9670;&#160;</a></span>NetworkPrimingEngineView() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::engine::NetworkPrimingEngineView::NetworkPrimingEngineView </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>primingSymbol</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a> &amp;&#160;</td>
+          <td class="paramname"><em>baseEngine</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Constructs the view by looking up the priming species by symbol. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">primingSymbol</td><td>Symbol string of the species to prime. </td></tr>
+    <tr><td class="paramname">baseEngine</td><td>Reference to the base <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> to wrap. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section pre"><dt>Precondition</dt><dd>primingSymbol must correspond to a valid species in atomic::species registry. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The view will contain only reactions that involve the priming species. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::out_of_range</td><td>If primingSymbol is not found in the species registry. </td></tr>
+    <tr><td class="paramname">std::runtime_error</td><td>If no reactions contain the priming species. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a0d505b967dc3b50f6966a0110e53a6d7" name="a0d505b967dc3b50f6966a0110e53a6d7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0d505b967dc3b50f6966a0110e53a6d7">&#9670;&#160;</a></span>NetworkPrimingEngineView() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::engine::NetworkPrimingEngineView::NetworkPrimingEngineView </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>primingSpecies</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a> &amp;&#160;</td>
+          <td class="paramname"><em>baseEngine</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Constructs the view using an existing Species object. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">primingSpecies</td><td>The species object to prime. </td></tr>
+    <tr><td class="paramname">baseEngine</td><td>Reference to the base <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> to wrap. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section pre"><dt>Precondition</dt><dd>primingSpecies must be valid and present in the network of baseEngine. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The view will contain only reactions that involve the priming species. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If no reactions contain the priming species. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="acaf9433246a58f2365c5bd8907cbacbb" name="acaf9433246a58f2365c5bd8907cbacbb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acaf9433246a58f2365c5bd8907cbacbb">&#9670;&#160;</a></span>constructPrimingReactionSet()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; std::string &gt; gridfire::engine::NetworkPrimingEngineView::constructPrimingReactionSet </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>primingSpecies</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a> &amp;&#160;</td>
+          <td class="paramname"><em>baseEngine</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructs the set of reaction names that involve the priming species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">primingSpecies</td><td>Species for which to collect priming reactions. </td></tr>
+    <tr><td class="paramname">baseEngine</td><td>Base engine containing the full network of reactions. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section pre"><dt>Precondition</dt><dd>baseEngine.getNetworkReactions() returns a valid iterable set of reactions. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>Returns a vector of unique reaction name strings containing the priming species. </dd></dl>
+<dl class="section return"><dt>Returns</dt><dd>Vector of reaction name strings containing the priming species. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If no reactions involve the priming species. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="af5d4b8d6b11e83d57d6e08b12ce5882d" name="af5d4b8d6b11e83d57d6e08b12ce5882d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af5d4b8d6b11e83d57d6e08b12ce5882d">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::engine::NetworkPrimingEngineView::m_logger = LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ad78f293f31a7ff8120b85e26e5d6dcfd" name="ad78f293f31a7ff8120b85e26e5d6dcfd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad78f293f31a7ff8120b85e26e5d6dcfd">&#9670;&#160;</a></span>m_primingSpecies</h2>
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+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::atomic::Species gridfire::engine::NetworkPrimingEngineView::m_primingSpecies</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
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+
+<p>The priming species, if specified. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/engine/views/<a class="el" href="engine__priming_8h.html">engine_priming.h</a></li>
+<li>src/lib/engine/views/<a class="el" href="engine__priming_8cpp.html">engine_priming.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
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+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1engine.html">engine</a></li><li class="navelem"><a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html">NetworkPrimingEngineView</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/classgridfire_1_1engine_1_1NetworkPrimingEngineView.js b/docs/html/classgridfire_1_1engine_1_1NetworkPrimingEngineView.js
new file mode 100644
index 00000000..7bcf5f14
--- /dev/null
+++ b/docs/html/classgridfire_1_1engine_1_1NetworkPrimingEngineView.js
@@ -0,0 +1,8 @@
+var classgridfire_1_1engine_1_1NetworkPrimingEngineView =
+[
+    [ "NetworkPrimingEngineView", "classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#ad4eec8af1ab1f918fd4e92fac47adaf4", null ],
+    [ "NetworkPrimingEngineView", "classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#a0d505b967dc3b50f6966a0110e53a6d7", null ],
+    [ "constructPrimingReactionSet", "classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#acaf9433246a58f2365c5bd8907cbacbb", null ],
+    [ "m_logger", "classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#af5d4b8d6b11e83d57d6e08b12ce5882d", null ],
+    [ "m_primingSpecies", "classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#ad78f293f31a7ff8120b85e26e5d6dcfd", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1engine_1_1NetworkPrimingEngineView__coll__graph.map b/docs/html/classgridfire_1_1engine_1_1NetworkPrimingEngineView__coll__graph.map
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+<text text-anchor="start" x="811.5" y="-574.07" font-family="Helvetica,sans-Serif" font-size="10.00">std::unordered_set</text>
+<text text-anchor="middle" x="857" y="-563.07" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; size_t &gt;</text>
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+<!-- Node25&#45;&gt;Node24 -->
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+<title>Node25&#45;&gt;Node24</title>
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+<text text-anchor="middle" x="1184.5" y="-456.57" font-family="Helvetica,sans-Serif" font-size="10.00"> fourdst::atomic::Species &gt;</text>
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+<!-- Node28&#45;&gt;Node1 -->
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+<!-- Node28&#45;&gt;Node27 -->
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+<title>Node28&#45;&gt;Node27</title>
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+<text text-anchor="middle" x="1184.5" y="-181.57" font-family="Helvetica,sans-Serif" font-size="10.00"> size_t &gt;</text>
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+<!-- Node28&#45;&gt;Node30 -->
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+<title>Node28&#45;&gt;Node30</title>
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+<text text-anchor="start" x="1124" y="-133.57" font-family="Helvetica,sans-Serif" font-size="10.00">&lt; size_t, fourdst::atomic</text>
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+<!-- Node28&#45;&gt;Node31 -->
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+<title>Node28&#45;&gt;Node31</title>
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+<title>Node29&#45;&gt;Node6</title>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a>() const noexcept override</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <div class="headertitle"><div class="title">gridfire::exceptions::BadCollectionError Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
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+<p>Exception for invalid composition collection in the engine.  
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+<p><code>#include &lt;error_engine.h&gt;</code></p>
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+Additional Inherited Members</h2></td></tr>
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+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
+<tr class="separator:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a6986522d45e8d94da310d1b37373414c"><td class="memItemLeft" align="right" valign="top">const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a> () const noexcept override</td></tr>
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+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Exception for invalid composition collection in the engine. </p>
+<p>This exception is thrown when the engine encounters an invalid state while trying to collect the composition from the entire engine stack </p>
+</div><hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/exceptions/<a class="el" href="error__engine_8h.html">error_engine.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
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+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1exceptions.html">exceptions</a></li><li class="navelem"><a class="el" href="classgridfire_1_1exceptions_1_1BadCollectionError.html">BadCollectionError</a></li>
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+  <div class="summary">
+<a href="classgridfire_1_1exceptions_1_1BadRHSEngineError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::BadRHSEngineError Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
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+<p>Exception for errors in calculating the right-hand side (RHS).  
+ <a href="classgridfire_1_1exceptions_1_1BadRHSEngineError.html#details">More...</a></p>
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1exceptions_1_1GridFireError')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td></tr>
+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
+<tr class="separator:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a6986522d45e8d94da310d1b37373414c"><td class="memItemLeft" align="right" valign="top">const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a> () const noexcept override</td></tr>
+<tr class="separator:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Exception for errors in calculating the right-hand side (RHS). </p>
+<p>This exception is thrown when the engine encounters an error while calculating the right-hand side of the reaction network equations. </p>
+</div><hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/exceptions/<a class="el" href="error__engine_8h.html">error_engine.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
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+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1exceptions.html">exceptions</a></li><li class="navelem"><a class="el" href="classgridfire_1_1exceptions_1_1BadRHSEngineError.html">BadRHSEngineError</a></li>
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+<div class="header">
+  <div class="summary">
+<a href="classgridfire_1_1exceptions_1_1CVODESolverFailureError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::CVODESolverFailureError Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
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+<p>Exception for failures in the CVODE solver.  
+ <a href="classgridfire_1_1exceptions_1_1CVODESolverFailureError.html#details">More...</a></p>
+
+<p><code>#include &lt;error_solver.h&gt;</code></p>
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1exceptions_1_1GridFireError')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td></tr>
+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
+<tr class="separator:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a6986522d45e8d94da310d1b37373414c"><td class="memItemLeft" align="right" valign="top">const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a> () const noexcept override</td></tr>
+<tr class="separator:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Exception for failures in the CVODE solver. </p>
+<p>This exception is thrown when the CVODE solver from the SUNDIALS suite encounters a failure during its operation. </p>
+</div><hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/exceptions/<a class="el" href="error__solver_8h.html">error_solver.h</a></li>
+</ul>
+</div><!-- contents -->
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+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1exceptions.html">exceptions</a></li><li class="navelem"><a class="el" href="classgridfire_1_1exceptions_1_1CVODESolverFailureError.html">CVODESolverFailureError</a></li>
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diff --git a/docs/html/classgridfire_1_1exceptions_1_1DebugException-members.html b/docs/html/classgridfire_1_1exceptions_1_1DebugException-members.html
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+<meta name="generator" content="Doxygen 1.9.8"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
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+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
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+ </tbody>
+</table>
+</div>
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+<!-- Generated by Doxygen 1.9.8 -->
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::exceptions::DebugException Member List</div></div>
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+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1exceptions_1_1DebugException.html">gridfire::exceptions::DebugException</a>, including all inherited members.</p>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1DebugException.html#a4c9767a6ef00a5b185ee121f79775b0c">DebugException</a>(const std::string_view message, const std::source_location loc=std::source_location::current())</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1DebugException.html">gridfire::exceptions::DebugException</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1DebugException.html#a0eb41e70d1d06e45632e157507aec2c3">format_error</a>(std::string_view message, const std::source_location loc)</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1DebugException.html">gridfire::exceptions::DebugException</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a>(std::string msg)</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a7c554458220cedf87907df652fc81301">m_msg</a></td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a>() const noexcept override</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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+</div><!-- doc-content -->
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+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1exceptions_1_1DebugException.html b/docs/html/classgridfire_1_1exceptions_1_1DebugException.html
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+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-static-methods">Static Private Member Functions</a> &#124;
+<a href="classgridfire_1_1exceptions_1_1DebugException-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::DebugException Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
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+<p>Exception class for debug-only errors.  
+ <a href="classgridfire_1_1exceptions_1_1DebugException.html#details">More...</a></p>
+
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
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+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
+<tr class="separator:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
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+<h2 class="memtitle"><span class="permalink"><a href="#a0eb41e70d1d06e45632e157507aec2c3">&#9670;&#160;</a></span>format_error()</h2>
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diff --git a/docs/html/classgridfire_1_1exceptions_1_1EngineError-members.html b/docs/html/classgridfire_1_1exceptions_1_1EngineError-members.html
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <div class="headertitle"><div class="title">gridfire::exceptions::EngineError Member List</div></div>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a>() const noexcept override</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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+<div class="header">
+  <div class="summary">
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="classgridfire_1_1exceptions_1_1EngineError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::EngineError Class Reference</div></div>
+</div><!--header-->
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+<p>Base class for engine-related exceptions.  
+ <a href="classgridfire_1_1exceptions_1_1EngineError.html#details">More...</a></p>
+
+<p><code>#include &lt;error_engine.h&gt;</code></p>
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
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+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
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+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
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+<p>This class serves as the base for all exceptions specific to the reaction network engine in the GridFire library. It extends the <a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html" title="Base class for GridFire exceptions.">GridFireError</a> class and allows for custom error messages related to engine operations. </p>
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+<p>Exception for failures in partitioning the engine.  
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+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
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+<div class="textblock"><p>Exception for failures in partitioning the engine. </p>
+<p>This exception is thrown when the engine fails to partition the reaction network as required for certain calculations or optimizations. </p>
+</div><hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/exceptions/<a class="el" href="error__engine_8h.html">error_engine.h</a></li>
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+</ul>
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+</table>
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+  <div class="summary">
+<a href="classgridfire_1_1exceptions_1_1HashingError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::HashingError Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Exception class for hashing-related errors in GridFire.  
+ <a href="classgridfire_1_1exceptions_1_1HashingError.html#details">More...</a></p>
+
+<p><code>#include &lt;error_utils.h&gt;</code></p>
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::exceptions::HashingError:</div>
+<div class="dyncontent">
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1exceptions_1_1GridFireError')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td></tr>
+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
+<tr class="separator:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a6986522d45e8d94da310d1b37373414c"><td class="memItemLeft" align="right" valign="top">const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a> () const noexcept override</td></tr>
+<tr class="separator:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Exception class for hashing-related errors in GridFire. </p>
+<p>This class is used to represent errors that occur during hashing operations. </p>
+</div><hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/exceptions/<a class="el" href="error__utils_8h.html">error_utils.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1exceptions.html">exceptions</a></li><li class="navelem"><a class="el" href="classgridfire_1_1exceptions_1_1HashingError.html">HashingError</a></li>
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+<div class="header">
+  <div class="summary">
+<a href="classgridfire_1_1exceptions_1_1IllConditionedJacobianError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::IllConditionedJacobianError Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Exception thrown when the Jacobian matrix is ill-conditioned.  
+ <a href="classgridfire_1_1exceptions_1_1IllConditionedJacobianError.html#details">More...</a></p>
+
+<p><code>#include &lt;error_solver.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::exceptions::IllConditionedJacobianError:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1exceptions_1_1IllConditionedJacobianError__inherit__graph.svg" width="218" height="300"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::exceptions::IllConditionedJacobianError:</div>
+<div class="dyncontent">
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1exceptions_1_1GridFireError')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td></tr>
+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
+<tr class="separator:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a6986522d45e8d94da310d1b37373414c"><td class="memItemLeft" align="right" valign="top">const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a> () const noexcept override</td></tr>
+<tr class="separator:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Exception thrown when the Jacobian matrix is ill-conditioned. </p>
+<p>This exception is thrown when the solver detects that the Jacobian matrix is ill-conditioned, which may lead to inaccurate or unstable solutions. </p>
+</div><hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/exceptions/<a class="el" href="error__solver_8h.html">error_solver.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
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+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::exceptions::InvalidQSESolutionError Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1exceptions_1_1InvalidQSESolutionError.html">gridfire::exceptions::InvalidQSESolutionError</a>, including all inherited members.</p>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1EngineError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a>(std::string msg)</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1EngineError.html">gridfire::exceptions::EngineError</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a7c554458220cedf87907df652fc81301">m_msg</a></td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a>() const noexcept override</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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diff --git a/docs/html/classgridfire_1_1exceptions_1_1InvalidQSESolutionError.html b/docs/html/classgridfire_1_1exceptions_1_1InvalidQSESolutionError.html
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+<title>GridFire: gridfire::exceptions::InvalidQSESolutionError Class Reference</title>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
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+</table>
+</div>
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+
+<div class="header">
+  <div class="summary">
+<a href="classgridfire_1_1exceptions_1_1InvalidQSESolutionError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::InvalidQSESolutionError Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Exception for invalid QSE solution in the engine.  
+ <a href="classgridfire_1_1exceptions_1_1InvalidQSESolutionError.html#details">More...</a></p>
+
+<p><code>#include &lt;error_engine.h&gt;</code></p>
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+Collaboration diagram for gridfire::exceptions::InvalidQSESolutionError:</div>
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1exceptions_1_1GridFireError')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td></tr>
+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
+<tr class="separator:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a6986522d45e8d94da310d1b37373414c"><td class="memItemLeft" align="right" valign="top">const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a> () const noexcept override</td></tr>
+<tr class="separator:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Exception for invalid QSE solution in the engine. </p>
+<p>This exception is thrown when the engine computes an invalid solution while performing Quasi-Statistical Equilibrium (QSE) calculations. </p>
+</div><hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/exceptions/<a class="el" href="error__engine_8h.html">error_engine.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
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+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1exceptions.html">exceptions</a></li><li class="navelem"><a class="el" href="classgridfire_1_1exceptions_1_1InvalidQSESolutionError.html">InvalidQSESolutionError</a></li>
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+<div class="SRStatus" id="NoMatches">No Matches</div>
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+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::exceptions::JacobianError Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1exceptions_1_1JacobianError.html">gridfire::exceptions::JacobianError</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1EngineError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a>(std::string msg)</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1EngineError.html">gridfire::exceptions::EngineError</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a7c554458220cedf87907df652fc81301">m_msg</a></td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a>() const noexcept override</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+</html>
diff --git a/docs/html/classgridfire_1_1exceptions_1_1JacobianError.html b/docs/html/classgridfire_1_1exceptions_1_1JacobianError.html
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+<meta name="generator" content="Doxygen 1.9.8"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::exceptions::JacobianError Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="navtreedata.js"></script>
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+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.9.8 -->
+<script type="text/javascript">
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+<div id="MSearchSelectWindow"
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+<div id="MSearchResults">
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+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
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+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="classgridfire_1_1exceptions_1_1JacobianError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::JacobianError Class Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Base class for Jacobian-related exceptions.  
+ <a href="classgridfire_1_1exceptions_1_1JacobianError.html#details">More...</a></p>
+
+<p><code>#include &lt;error_engine.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::exceptions::JacobianError:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1exceptions_1_1JacobianError__inherit__graph.svg" width="100%" height="434"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::exceptions::JacobianError:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1exceptions_1_1JacobianError__coll__graph.svg" width="263" height="407"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1exceptions_1_1GridFireError')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td></tr>
+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
+<tr class="separator:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a6986522d45e8d94da310d1b37373414c"><td class="memItemLeft" align="right" valign="top">const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a> () const noexcept override</td></tr>
+<tr class="separator:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Base class for Jacobian-related exceptions. </p>
+<p>This class serves as the base for all exceptions specific to Jacobian matrix operations in the reaction network engine. </p>
+</div><hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/exceptions/<a class="el" href="error__engine_8h.html">error_engine.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
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+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1exceptions.html">exceptions</a></li><li class="navelem"><a class="el" href="classgridfire_1_1exceptions_1_1JacobianError.html">JacobianError</a></li>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a>() const noexcept override</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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diff --git a/docs/html/classgridfire_1_1exceptions_1_1KINSolSolverFailureError.html b/docs/html/classgridfire_1_1exceptions_1_1KINSolSolverFailureError.html
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+<a href="classgridfire_1_1exceptions_1_1KINSolSolverFailureError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::KINSolSolverFailureError Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
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+<p>Exception for failures in the KINSOL solver.  
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+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
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+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Exception for failures in the KINSOL solver. </p>
+<p>This exception is thrown when the KINSOL solver from the SUNDIALS suite encounters a failure during its operation. </p>
+</div><hr/>The documentation for this class was generated from the following file:<ul>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a>() const noexcept override</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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diff --git a/docs/html/classgridfire_1_1exceptions_1_1MissingBaseReactionError.html b/docs/html/classgridfire_1_1exceptions_1_1MissingBaseReactionError.html
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::exceptions::MissingBaseReactionError Class Reference</title>
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+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="header">
+  <div class="summary">
+<a href="classgridfire_1_1exceptions_1_1MissingBaseReactionError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::MissingBaseReactionError Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Exception thrown when a required reaction is missing from the underlying database (e.g., REACLIB).  
+ <a href="classgridfire_1_1exceptions_1_1MissingBaseReactionError.html#details">More...</a></p>
+
+<p><code>#include &lt;error_policy.h&gt;</code></p>
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+<div class="dyncontent">
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::exceptions::MissingBaseReactionError:</div>
+<div class="dyncontent">
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1exceptions_1_1GridFireError')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td></tr>
+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
+<tr class="separator:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a6986522d45e8d94da310d1b37373414c"><td class="memItemLeft" align="right" valign="top">const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a> () const noexcept override</td></tr>
+<tr class="separator:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Exception thrown when a required reaction is missing from the underlying database (e.g., REACLIB). </p>
+<p>This typically occurs during the construction of a <code>ReactionChainPolicy</code> if the reaction library used by GridFire does not contain a reaction specified by the policy. </p>
+</div><hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/exceptions/<a class="el" href="error__policy_8h.html">error_policy.h</a></li>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a>() const noexcept override</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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diff --git a/docs/html/classgridfire_1_1exceptions_1_1MissingKeyReactionError.html b/docs/html/classgridfire_1_1exceptions_1_1MissingKeyReactionError.html
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+<title>GridFire: gridfire::exceptions::MissingKeyReactionError Class Reference</title>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+</table>
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+<div class="header">
+  <div class="summary">
+<a href="classgridfire_1_1exceptions_1_1MissingKeyReactionError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::MissingKeyReactionError Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
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+<div class="contents">
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+<p>Exception thrown when a constructed network fails to include a key reaction required by the policy.  
+ <a href="classgridfire_1_1exceptions_1_1MissingKeyReactionError.html#details">More...</a></p>
+
+<p><code>#include &lt;error_policy.h&gt;</code></p>
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+<div class="dyncontent">
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::exceptions::MissingKeyReactionError:</div>
+<div class="dyncontent">
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
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+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Exception thrown when a constructed network fails to include a key reaction required by the policy. </p>
+<p>This error is typically thrown from the <code>construct()</code> method of a <code>NetworkPolicy</code> after the network has been built but fails the final verification step. </p>
+</div><hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/exceptions/<a class="el" href="error__policy_8h.html">error_policy.h</a></li>
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+</div><!-- contents -->
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::exceptions::MissingSeedSpeciesError Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1exceptions_1_1MissingSeedSpeciesError.html">gridfire::exceptions::MissingSeedSpeciesError</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1PolicyError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a>(std::string msg)</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1PolicyError.html">gridfire::exceptions::PolicyError</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a7c554458220cedf87907df652fc81301">m_msg</a></td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a>() const noexcept override</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+</html>
diff --git a/docs/html/classgridfire_1_1exceptions_1_1MissingSeedSpeciesError.html b/docs/html/classgridfire_1_1exceptions_1_1MissingSeedSpeciesError.html
new file mode 100644
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+<meta name="generator" content="Doxygen 1.9.8"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::exceptions::MissingSeedSpeciesError Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.9.8 -->
+<script type="text/javascript">
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+/* @license-end */
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+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
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+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
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+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="classgridfire_1_1exceptions_1_1MissingSeedSpeciesError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::MissingSeedSpeciesError Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Exception thrown when a required seed species is not found in the initial composition.  
+ <a href="classgridfire_1_1exceptions_1_1MissingSeedSpeciesError.html#details">More...</a></p>
+
+<p><code>#include &lt;error_policy.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::exceptions::MissingSeedSpeciesError:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1exceptions_1_1MissingSeedSpeciesError__inherit__graph.svg" width="204" height="300"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::exceptions::MissingSeedSpeciesError:</div>
+<div class="dyncontent">
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1exceptions_1_1GridFireError')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td></tr>
+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
+<tr class="separator:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a6986522d45e8d94da310d1b37373414c"><td class="memItemLeft" align="right" valign="top">const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a> () const noexcept override</td></tr>
+<tr class="separator:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Exception thrown when a required seed species is not found in the initial composition. </p>
+<p>This error occurs when a <code>NetworkPolicy</code> is initialized with a composition that lacks one or more of the essential species needed to construct the network. </p>
+</div><hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/exceptions/<a class="el" href="error__policy_8h.html">error_policy.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
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+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1exceptions.html">exceptions</a></li><li class="navelem"><a class="el" href="classgridfire_1_1exceptions_1_1MissingSeedSpeciesError.html">MissingSeedSpeciesError</a></li>
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+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="classgridfire_1_1exceptions_1_1NetworkResizedError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::NetworkResizedError Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Exception for errors during network resizing.  
+ <a href="classgridfire_1_1exceptions_1_1NetworkResizedError.html#details">More...</a></p>
+
+<p><code>#include &lt;error_engine.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::exceptions::NetworkResizedError:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1exceptions_1_1NetworkResizedError__inherit__graph.svg" width="178" height="300"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::exceptions::NetworkResizedError:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1exceptions_1_1NetworkResizedError__coll__graph.svg" width="268" height="407"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1exceptions_1_1GridFireError')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td></tr>
+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
+<tr class="separator:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a6986522d45e8d94da310d1b37373414c"><td class="memItemLeft" align="right" valign="top">const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a> () const noexcept override</td></tr>
+<tr class="separator:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Exception for errors during network resizing. </p>
+<p>This exception is thrown when the engine encounters an error while attempting to resize the reaction network, such as when adding or removing species or reactions. </p>
+</div><hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/exceptions/<a class="el" href="error__engine_8h.html">error_engine.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
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+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1exceptions.html">exceptions</a></li><li class="navelem"><a class="el" href="classgridfire_1_1exceptions_1_1NetworkResizedError.html">NetworkResizedError</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="classgridfire_1_1exceptions_1_1PolicyError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::PolicyError Class Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Base class for all exceptions related to network policy operations.  
+ <a href="classgridfire_1_1exceptions_1_1PolicyError.html#details">More...</a></p>
+
+<p><code>#include &lt;error_policy.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::exceptions::PolicyError:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1exceptions_1_1PolicyError__inherit__graph.svg" width="100%" height="434"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::exceptions::PolicyError:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1exceptions_1_1PolicyError__coll__graph.svg" width="263" height="318"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1PolicyError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
+<tr class="separator:a672d340ff9287f5511342a4e5f4fbb23"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1exceptions_1_1GridFireError')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td></tr>
+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
+<tr class="separator:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a6986522d45e8d94da310d1b37373414c"><td class="memItemLeft" align="right" valign="top">const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a> () const noexcept override</td></tr>
+<tr class="separator:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Base class for all exceptions related to network policy operations. </p>
+<p>This exception is the parent for more specific policy-related errors. Catching this type will catch any exception originating from the policy system. </p>
+</div><h2 class="groupheader">Member Function Documentation</h2>
+<a id="a672d340ff9287f5511342a4e5f4fbb23" name="a672d340ff9287f5511342a4e5f4fbb23"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a672d340ff9287f5511342a4e5f4fbb23">&#9670;&#160;</a></span>GridFireError()</h2>
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+          <td>(</td>
+          <td class="paramtype">std::string&#160;</td>
+          <td class="paramname"><em>msg</em></td><td>)</td>
+          <td></td>
+        </tr>
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+</div>
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+<hr/>The documentation for this class was generated from the following file:<ul>
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+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::exceptions::ReactionError Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html">gridfire::exceptions::ReactionError</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a>(std::string msg)</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html#a980c78dbdeac44fd3eec976221799647">m_message</a></td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html">gridfire::exceptions::ReactionError</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a7c554458220cedf87907df652fc81301">m_msg</a></td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html#ae3531af904d90838ac856cf72cb555f8">m_reactionID</a></td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html">gridfire::exceptions::ReactionError</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html#a51a26442fb905643a6d871ab733f0ab5">ReactionError</a>(const std::string &amp;msg, const std::string &amp;reactionId)</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html">gridfire::exceptions::ReactionError</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html#a7bc47cdb02c2f8a803306cb9bb75b1af">what</a>() const noexcept override</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html">gridfire::exceptions::ReactionError</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+ </tbody>
+</table>
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+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1exceptions_1_1ReactionError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::ReactionError Class Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Base class for all exceptions related to reaction operations.  
+ <a href="classgridfire_1_1exceptions_1_1ReactionError.html#details">More...</a></p>
+
+<p><code>#include &lt;error_reaction.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::exceptions::ReactionError:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1exceptions_1_1ReactionError__inherit__graph.svg" width="176" height="300"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::exceptions::ReactionError:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1exceptions_1_1ReactionError__coll__graph.svg" width="275" height="318"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a51a26442fb905643a6d871ab733f0ab5" id="r_a51a26442fb905643a6d871ab733f0ab5"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html#a51a26442fb905643a6d871ab733f0ab5">ReactionError</a> (const std::string &amp;msg, const std::string &amp;reactionId)</td></tr>
+<tr class="separator:a51a26442fb905643a6d871ab733f0ab5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7bc47cdb02c2f8a803306cb9bb75b1af" id="r_a7bc47cdb02c2f8a803306cb9bb75b1af"><td class="memItemLeft" align="right" valign="top">const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html#a7bc47cdb02c2f8a803306cb9bb75b1af">what</a> () const noexcept override</td></tr>
+<tr class="separator:a7bc47cdb02c2f8a803306cb9bb75b1af"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1exceptions_1_1GridFireError')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td></tr>
+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
+<tr class="separator:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a6986522d45e8d94da310d1b37373414c"><td class="memItemLeft" align="right" valign="top">const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a> () const noexcept override</td></tr>
+<tr class="separator:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a980c78dbdeac44fd3eec976221799647" id="r_a980c78dbdeac44fd3eec976221799647"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html#a980c78dbdeac44fd3eec976221799647">m_message</a></td></tr>
+<tr class="separator:a980c78dbdeac44fd3eec976221799647"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae3531af904d90838ac856cf72cb555f8" id="r_ae3531af904d90838ac856cf72cb555f8"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html#ae3531af904d90838ac856cf72cb555f8">m_reactionID</a></td></tr>
+<tr class="separator:ae3531af904d90838ac856cf72cb555f8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Base class for all exceptions related to reaction operations. </p>
+<p>This exception is the parent for more specific reaction-related errors. Catching this type will catch any exception originating from reaction handling. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a51a26442fb905643a6d871ab733f0ab5" name="a51a26442fb905643a6d871ab733f0ab5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a51a26442fb905643a6d871ab733f0ab5">&#9670;&#160;</a></span>ReactionError()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::exceptions::ReactionError::ReactionError </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>msg</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>reactionId</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a7bc47cdb02c2f8a803306cb9bb75b1af" name="a7bc47cdb02c2f8a803306cb9bb75b1af"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7bc47cdb02c2f8a803306cb9bb75b1af">&#9670;&#160;</a></span>what()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
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+          <td class="memname">const char * gridfire::exceptions::ReactionError::what </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">noexcept</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a980c78dbdeac44fd3eec976221799647" name="a980c78dbdeac44fd3eec976221799647"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a980c78dbdeac44fd3eec976221799647">&#9670;&#160;</a></span>m_message</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::exceptions::ReactionError::m_message</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae3531af904d90838ac856cf72cb555f8" name="ae3531af904d90838ac856cf72cb555f8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae3531af904d90838ac856cf72cb555f8">&#9670;&#160;</a></span>m_reactionID</h2>
+
+<div class="memitem">
+<div class="memproto">
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+  <tr>
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+          <td class="memname">std::string gridfire::exceptions::ReactionError::m_reactionID</td>
+        </tr>
+      </table>
+  </td>
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+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
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+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/exceptions/<a class="el" href="error__reaction_8h.html">error_reaction.h</a></li>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/classgridfire_1_1exceptions_1_1ReactionError.js b/docs/html/classgridfire_1_1exceptions_1_1ReactionError.js
new file mode 100644
index 00000000..27ef9de4
--- /dev/null
+++ b/docs/html/classgridfire_1_1exceptions_1_1ReactionError.js
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+var classgridfire_1_1exceptions_1_1ReactionError =
+[
+    [ "ReactionError", "classgridfire_1_1exceptions_1_1ReactionError.html#a51a26442fb905643a6d871ab733f0ab5", null ],
+    [ "what", "classgridfire_1_1exceptions_1_1ReactionError.html#a7bc47cdb02c2f8a803306cb9bb75b1af", null ],
+    [ "m_message", "classgridfire_1_1exceptions_1_1ReactionError.html#a980c78dbdeac44fd3eec976221799647", null ],
+    [ "m_reactionID", "classgridfire_1_1exceptions_1_1ReactionError.html#ae3531af904d90838ac856cf72cb555f8", null ]
+];
\ No newline at end of file
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+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1exceptions_1_1ReactionParsingError.html">gridfire::exceptions::ReactionParsingError</a>, including all inherited members.</p>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a>(std::string msg)</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html#a980c78dbdeac44fd3eec976221799647">m_message</a></td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html">gridfire::exceptions::ReactionError</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a7c554458220cedf87907df652fc81301">m_msg</a></td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html#ae3531af904d90838ac856cf72cb555f8">m_reactionID</a></td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html">gridfire::exceptions::ReactionError</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionParsingError.html#a51a26442fb905643a6d871ab733f0ab5">ReactionError</a>(const std::string &amp;msg, const std::string &amp;reactionId)</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionParsingError.html">gridfire::exceptions::ReactionParsingError</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html#a7bc47cdb02c2f8a803306cb9bb75b1af">what</a>() const noexcept override</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html">gridfire::exceptions::ReactionError</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
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+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/classgridfire_1_1exceptions_1_1ReactionParsingError.html b/docs/html/classgridfire_1_1exceptions_1_1ReactionParsingError.html
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+<title>GridFire: gridfire::exceptions::ReactionParsingError Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="SRStatus" id="NoMatches">No Matches</div>
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+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="classgridfire_1_1exceptions_1_1ReactionParsingError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::ReactionParsingError Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;error_reaction.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::exceptions::ReactionParsingError:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1exceptions_1_1ReactionParsingError__inherit__graph.svg" width="176" height="300"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::exceptions::ReactionParsingError:</div>
+<div class="dyncontent">
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
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+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
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+<tr class="inherit_header pub_methods_classgridfire_1_1exceptions_1_1ReactionError"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1exceptions_1_1ReactionError')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html">gridfire::exceptions::ReactionError</a></td></tr>
+<tr class="memitem:a51a26442fb905643a6d871ab733f0ab5 inherit pub_methods_classgridfire_1_1exceptions_1_1ReactionError" id="r_a51a26442fb905643a6d871ab733f0ab5"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html#a51a26442fb905643a6d871ab733f0ab5">ReactionError</a> (const std::string &amp;msg, const std::string &amp;reactionId)</td></tr>
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+<tr class="inherit_header pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1exceptions_1_1GridFireError')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td></tr>
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+<h2 class="groupheader">Member Function Documentation</h2>
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+<h2 class="memtitle"><span class="permalink"><a href="#a51a26442fb905643a6d871ab733f0ab5">&#9670;&#160;</a></span>ReactionError()</h2>
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+          <td class="memname">gridfire::exceptions::ReactionError::ReactionError </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>msg</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>reactionId</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
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+<hr/>The documentation for this class was generated from the following file:<ul>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1SolverError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a>(std::string msg)</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1SolverError.html">gridfire::exceptions::SolverError</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span><span class="mlabel">private</span></td></tr>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a>() const noexcept override</td><td class="entry"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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+
+<div class="header">
+  <div class="summary">
+<a href="classgridfire_1_1exceptions_1_1SUNDIALSError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::SUNDIALSError Class Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Base class for exceptions related to SUNDIALS solver operations.  
+ <a href="classgridfire_1_1exceptions_1_1SUNDIALSError.html#details">More...</a></p>
+
+<p><code>#include &lt;error_solver.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::exceptions::SUNDIALSError:</div>
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::exceptions::SUNDIALSError:</div>
+<div class="dyncontent">
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1exceptions_1_1GridFireError')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td></tr>
+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
+<tr class="separator:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a6986522d45e8d94da310d1b37373414c"><td class="memItemLeft" align="right" valign="top">const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a> () const noexcept override</td></tr>
+<tr class="separator:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Base class for exceptions related to SUNDIALS solver operations. </p>
+<p>This class serves as the base for all exceptions specific to SUNDIALS solver errors in the GridFire library. </p>
+</div><hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/exceptions/<a class="el" href="error__solver_8h.html">error_solver.h</a></li>
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+  <div class="summary">
+<a href="classgridfire_1_1exceptions_1_1SingularJacobianError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::SingularJacobianError Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Exception thrown when the Jacobian matrix is singular.  
+ <a href="classgridfire_1_1exceptions_1_1SingularJacobianError.html#details">More...</a></p>
+
+<p><code>#include &lt;error_solver.h&gt;</code></p>
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1exceptions_1_1GridFireError')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td></tr>
+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
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+<tr class="memitem:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a6986522d45e8d94da310d1b37373414c"><td class="memItemLeft" align="right" valign="top">const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a> () const noexcept override</td></tr>
+<tr class="separator:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Exception thrown when the Jacobian matrix is singular. </p>
+<p>This exception is thrown when the solver encounters a singular Jacobian matrix, which prevents it from proceeding with the solution of the system. </p>
+</div><hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/exceptions/<a class="el" href="error__solver_8h.html">error_solver.h</a></li>
+</ul>
+</div><!-- contents -->
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+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1exceptions.html">exceptions</a></li><li class="navelem"><a class="el" href="classgridfire_1_1exceptions_1_1SingularJacobianError.html">SingularJacobianError</a></li>
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+<div class="header">
+  <div class="summary">
+<a href="#pri-methods">Private Member Functions</a> &#124;
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+  <div class="headertitle"><div class="title">gridfire::exceptions::SolverError Class Reference</div></div>
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+<p>Base class for all exceptions related to solver operations.  
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+<p><code>#include &lt;error_solver.h&gt;</code></p>
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+<tr class="separator:a672d340ff9287f5511342a4e5f4fbb23"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1exceptions_1_1GridFireError')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td></tr>
+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
+<tr class="separator:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a6986522d45e8d94da310d1b37373414c"><td class="memItemLeft" align="right" valign="top">const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a> () const noexcept override</td></tr>
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+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Base class for all exceptions related to solver operations. </p>
+<p>This exception is the parent for more specific solver-related errors. Catching this type will catch any exception originating from the solver system. </p>
+</div><h2 class="groupheader">Member Function Documentation</h2>
+<a id="a672d340ff9287f5511342a4e5f4fbb23" name="a672d340ff9287f5511342a4e5f4fbb23"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a672d340ff9287f5511342a4e5f4fbb23">&#9670;&#160;</a></span>GridFireError()</h2>
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+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::exceptions::GridFireError::GridFireError </td>
+          <td>(</td>
+          <td class="paramtype">std::string&#160;</td>
+          <td class="paramname"><em>msg</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">explicit</span><span class="mlabel">private</span></span>  </td>
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+</div>
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+<li>src/include/gridfire/exceptions/<a class="el" href="error__solver_8h.html">error_solver.h</a></li>
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+  <div class="headertitle"><div class="title">gridfire::exceptions::StaleJacobianError Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
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+<p>Exception for stale Jacobian matrix access.  
+ <a href="classgridfire_1_1exceptions_1_1StaleJacobianError.html#details">More...</a></p>
+
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+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
+<tr class="separator:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a6986522d45e8d94da310d1b37373414c"><td class="memItemLeft" align="right" valign="top">const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a> () const noexcept override</td></tr>
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+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Exception for stale Jacobian matrix access. </p>
+<p>This exception is thrown when an attempt is made to access a Jacobian matrix that is stale and needs to be regenerated. </p>
+</div><hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/exceptions/<a class="el" href="error__engine_8h.html">error_engine.h</a></li>
+</ul>
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+<div class="header">
+  <div class="summary">
+<a href="classgridfire_1_1exceptions_1_1UnableToSetNetworkReactionsError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::UnableToSetNetworkReactionsError Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
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+
+<p>Exception for failures in setting network reactions.  
+ <a href="classgridfire_1_1exceptions_1_1UnableToSetNetworkReactionsError.html#details">More...</a></p>
+
+<p><code>#include &lt;error_engine.h&gt;</code></p>
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+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1exceptions_1_1GridFireError')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td></tr>
+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
+<tr class="separator:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a6986522d45e8d94da310d1b37373414c"><td class="memItemLeft" align="right" valign="top">const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a> () const noexcept override</td></tr>
+<tr class="separator:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Exception for failures in setting network reactions. </p>
+<p>This exception is thrown when the engine fails to properly set or initialize the reactions in the reaction network. </p>
+</div><hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/exceptions/<a class="el" href="error__engine_8h.html">error_engine.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1exceptions.html">exceptions</a></li><li class="navelem"><a class="el" href="classgridfire_1_1exceptions_1_1UnableToSetNetworkReactionsError.html">UnableToSetNetworkReactionsError</a></li>
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diff --git a/docs/html/classgridfire_1_1exceptions_1_1UninitializedJacobianError.html b/docs/html/classgridfire_1_1exceptions_1_1UninitializedJacobianError.html
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+<div class="header">
+  <div class="summary">
+<a href="classgridfire_1_1exceptions_1_1UninitializedJacobianError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::UninitializedJacobianError Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
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+<p>Exception for uninitialized Jacobian matrix access.  
+ <a href="classgridfire_1_1exceptions_1_1UninitializedJacobianError.html#details">More...</a></p>
+
+<p><code>#include &lt;error_engine.h&gt;</code></p>
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+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Exception for uninitialized Jacobian matrix access. </p>
+<p>This exception is thrown when an attempt is made to access a Jacobian matrix that has not been initialized. </p>
+</div><hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/exceptions/<a class="el" href="error__engine_8h.html">error_engine.h</a></li>
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+<a href="classgridfire_1_1exceptions_1_1UnknownJacobianError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::exceptions::UnknownJacobianError Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
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+<p>Exception for unknown Jacobian matrix access.  
+ <a href="classgridfire_1_1exceptions_1_1UnknownJacobianError.html#details">More...</a></p>
+
+<p><code>#include &lt;error_engine.h&gt;</code></p>
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+Inheritance diagram for gridfire::exceptions::UnknownJacobianError:</div>
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::exceptions::UnknownJacobianError:</div>
+<div class="dyncontent">
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1exceptions_1_1GridFireError"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1exceptions_1_1GridFireError')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">gridfire::exceptions::GridFireError</a></td></tr>
+<tr class="memitem:a672d340ff9287f5511342a4e5f4fbb23 inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a672d340ff9287f5511342a4e5f4fbb23"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a672d340ff9287f5511342a4e5f4fbb23">GridFireError</a> (std::string msg)</td></tr>
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+<tr class="memitem:a6986522d45e8d94da310d1b37373414c inherit pub_methods_classgridfire_1_1exceptions_1_1GridFireError" id="r_a6986522d45e8d94da310d1b37373414c"><td class="memItemLeft" align="right" valign="top">const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">what</a> () const noexcept override</td></tr>
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+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Exception for unknown Jacobian matrix access. </p>
+<p>This exception is thrown when an attempt is made to access a Jacobian matrix that is unknown or not recognized by the engine. </p>
+</div><hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/exceptions/<a class="el" href="error__engine_8h.html">error_engine.h</a></li>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html#af43ad8375abf1cedfdccc296b9958c2b">Config</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html">gridfire::io::MESANetworkFileParser</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html#a84aa6894a331ad57bdab1e1ab85d4055">LogManager</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html">gridfire::io::MESANetworkFileParser</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html#aea206c3a7600db8d657666fef88fa20d">m_config</a></td><td class="entry"><a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html">gridfire::io::MESANetworkFileParser</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html#ab7f82597abf17f16c401bcdf528bd099">m_filename</a></td><td class="entry"><a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html">gridfire::io::MESANetworkFileParser</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html#ab9c683289d48e58edf06bf59215b4937">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html">gridfire::io::MESANetworkFileParser</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html#ac5963d0da6780de753df996b490f8d2c">MESANetworkFileParser</a>(const std::string &amp;filename)</td><td class="entry"><a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html">gridfire::io::MESANetworkFileParser</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html#a568194277733b5c537901f8af32ee329">parse</a>(const std::string &amp;filename) const override</td><td class="entry"><a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html">gridfire::io::MESANetworkFileParser</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html#a9b4095d06fad5df3805c92ae97b3eab3">~NetworkFileParser</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html">gridfire::io::NetworkFileParser</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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diff --git a/docs/html/classgridfire_1_1io_1_1MESANetworkFileParser.html b/docs/html/classgridfire_1_1io_1_1MESANetworkFileParser.html
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-types">Private Types</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1io_1_1MESANetworkFileParser-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::io::MESANetworkFileParser Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>A parser for MESA-format network files.  
+ <a href="classgridfire_1_1io_1_1MESANetworkFileParser.html#details">More...</a></p>
+
+<p><code>#include &lt;network_file.h&gt;</code></p>
+<div class="dynheader">
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+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1io_1_1MESANetworkFileParser__inherit__graph.svg" width="200" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
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+Collaboration diagram for gridfire::io::MESANetworkFileParser:</div>
+<div class="dyncontent">
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
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+<tr class="memdesc:ac5963d0da6780de753df996b490f8d2c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html" title="A parser for MESA-format network files.">MESANetworkFileParser</a>.  <br /></td></tr>
+<tr class="separator:ac5963d0da6780de753df996b490f8d2c"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a568194277733b5c537901f8af32ee329"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parses a MESA-format network file.  <br /></td></tr>
+<tr class="separator:a568194277733b5c537901f8af32ee329"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1io_1_1NetworkFileParser"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1io_1_1NetworkFileParser')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html">gridfire::io::NetworkFileParser</a></td></tr>
+<tr class="memitem:a9b4095d06fad5df3805c92ae97b3eab3 inherit pub_methods_classgridfire_1_1io_1_1NetworkFileParser" id="r_a9b4095d06fad5df3805c92ae97b3eab3"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html#a9b4095d06fad5df3805c92ae97b3eab3">~NetworkFileParser</a> ()=default</td></tr>
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+</table><table class="memberdecls">
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+<tr class="separator:ab9c683289d48e58edf06bf59215b4937"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>A parser for MESA-format network files. </p>
+<p>This class is designed to parse reaction network files that follow the format used by the MESA stellar evolution code. </p>
+</div><h2 class="groupheader">Member Typedef Documentation</h2>
+<a id="af43ad8375abf1cedfdccc296b9958c2b" name="af43ad8375abf1cedfdccc296b9958c2b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af43ad8375abf1cedfdccc296b9958c2b">&#9670;&#160;</a></span>Config</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">using <a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html#af43ad8375abf1cedfdccc296b9958c2b">gridfire::io::MESANetworkFileParser::Config</a> =  fourdst::config::Config</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a84aa6894a331ad57bdab1e1ab85d4055" name="a84aa6894a331ad57bdab1e1ab85d4055"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a84aa6894a331ad57bdab1e1ab85d4055">&#9670;&#160;</a></span>LogManager</h2>
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+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">using <a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html#a84aa6894a331ad57bdab1e1ab85d4055">gridfire::io::MESANetworkFileParser::LogManager</a> =  fourdst::logging::LogManager</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="ac5963d0da6780de753df996b490f8d2c" name="ac5963d0da6780de753df996b490f8d2c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac5963d0da6780de753df996b490f8d2c">&#9670;&#160;</a></span>MESANetworkFileParser()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::io::MESANetworkFileParser::MESANetworkFileParser </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>filename</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructs a <a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html" title="A parser for MESA-format network files.">MESANetworkFileParser</a>. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">filename</td><td>The path to the MESA network file. This may be used to pre-configure the parser.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The parser is initialized with the context of the given file. </dd></dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a568194277733b5c537901f8af32ee329" name="a568194277733b5c537901f8af32ee329"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a568194277733b5c537901f8af32ee329">&#9670;&#160;</a></span>parse()</h2>
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+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>filename</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
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+
+<p>Parses a MESA-format network file. </p>
+<p>This method will read and interpret the structure of a MESA network file to extract the list of reactions.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">filename</td><td>The path to the MESA network file. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <code>ParsedNetworkData</code> struct containing the list of reaction names.</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the file cannot be opened or if it contains formatting errors. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html#a66e8e724c903d6ef4dd1c8103276bdbf">gridfire::io::NetworkFileParser</a>.</p>
+
+</div>
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+<h2 class="groupheader">Member Data Documentation</h2>
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+<h2 class="memtitle"><span class="permalink"><a href="#aea206c3a7600db8d657666fef88fa20d">&#9670;&#160;</a></span>m_config</h2>
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+          <td class="memname"><a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html#af43ad8375abf1cedfdccc296b9958c2b">Config</a>&amp; gridfire::io::MESANetworkFileParser::m_config = Config::getInstance()</td>
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+<a href="#pub-methods">Public Member Functions</a> &#124;
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+  <div class="headertitle"><div class="title">gridfire::io::NetworkFileParser Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div></div>
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+<p>An abstract base class for network file parsers.  
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+Inheritance diagram for gridfire::io::NetworkFileParser:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1io_1_1NetworkFileParser__inherit__graph.svg" width="432" height="166"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a9b4095d06fad5df3805c92ae97b3eab3" id="r_a9b4095d06fad5df3805c92ae97b3eab3"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html#a9b4095d06fad5df3805c92ae97b3eab3">~NetworkFileParser</a> ()=default</td></tr>
+<tr class="memdesc:a9b4095d06fad5df3805c92ae97b3eab3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for the base class.  <br /></td></tr>
+<tr class="separator:a9b4095d06fad5df3805c92ae97b3eab3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a66e8e724c903d6ef4dd1c8103276bdbf" id="r_a66e8e724c903d6ef4dd1c8103276bdbf"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352">ParsedNetworkData</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html#a66e8e724c903d6ef4dd1c8103276bdbf">parse</a> (const std::string &amp;filename) const =0</td></tr>
+<tr class="memdesc:a66e8e724c903d6ef4dd1c8103276bdbf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parses a network file and returns the parsed data.  <br /></td></tr>
+<tr class="separator:a66e8e724c903d6ef4dd1c8103276bdbf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>An abstract base class for network file parsers. </p>
+<p>This class defines the interface for parsing files that contain reaction network definitions. Derived classes must implement the <code>parse</code> method to handle specific file formats. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a9b4095d06fad5df3805c92ae97b3eab3" name="a9b4095d06fad5df3805c92ae97b3eab3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9b4095d06fad5df3805c92ae97b3eab3">&#9670;&#160;</a></span>~NetworkFileParser()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual gridfire::io::NetworkFileParser::~NetworkFileParser </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Virtual destructor for the base class. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a66e8e724c903d6ef4dd1c8103276bdbf" name="a66e8e724c903d6ef4dd1c8103276bdbf"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a66e8e724c903d6ef4dd1c8103276bdbf">&#9670;&#160;</a></span>parse()</h2>
+
+<div class="memitem">
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+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
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+          <td class="memname">virtual <a class="el" href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352">ParsedNetworkData</a> gridfire::io::NetworkFileParser::parse </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>filename</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Parses a network file and returns the parsed data. </p>
+<p>This is a pure virtual function that must be implemented by derived classes. It takes a filename as input and returns a <code>ParsedNetworkData</code> struct containing the information extracted from the file.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">filename</td><td>The path to the network file to parse. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <code>ParsedNetworkData</code> struct containing the parsed reaction data.</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the file cannot be opened or a parsing error occurs.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p><b>Usage</b> </p><div class="fragment"><div class="line">std::unique_ptr&lt;NetworkFileParser&gt; parser = std::make_unique&lt;SimpleReactionListFileParser&gt;();</div>
+<div class="line"><span class="keywordflow">try</span> {</div>
+<div class="line">    <a class="code hl_typedef" href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352">ParsedNetworkData</a> data = parser-&gt;parse(<span class="stringliteral">&quot;my_reactions.txt&quot;</span>);</div>
+<div class="line">    <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>&amp; reaction_name : data.reactionPENames) {</div>
+<div class="line">        <span class="comment">// ... process reaction name</span></div>
+<div class="line">    }</div>
+<div class="line">} <span class="keywordflow">catch</span> (<span class="keyword">const</span> std::runtime_error&amp; e) {</div>
+<div class="line">    <span class="comment">// ... handle error</span></div>
+<div class="line">}</div>
+<div class="ttc" id="anamespacegridfire_1_1io_html_abcbdcbd13cfa8c9fbe1b48e8ee2cc352"><div class="ttname"><a href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352">gridfire::io::ParsedNetworkData</a></div><div class="ttdeci">std::vector&lt; std::string &gt; ParsedNetworkData</div><div class="ttdef"><b>Definition</b> network_file.h:12</div></div>
+</div><!-- fragment --> 
+<p>Implemented in <a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#a4df01e3a93e1291d2cde0458545325f8">gridfire::io::SimpleReactionListFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html#a568194277733b5c537901f8af32ee329">gridfire::io::MESANetworkFileParser</a>, and <a class="el" href="classPyNetworkFileParser.html#afe09d1e5b07110e62cf4c6ec713cff54">PyNetworkFileParser</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/io/<a class="el" href="network__file_8h.html">network_file.h</a></li>
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <div class="headertitle"><div class="title">gridfire::io::SimpleReactionListFileParser Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html">gridfire::io::SimpleReactionListFileParser</a>, including all inherited members.</p>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#ad913155a5a2a36b29e4ce4ca8d71c036">Config</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html">gridfire::io::SimpleReactionListFileParser</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#a6f8f9a1f54cd2be5ec66c3181be892de">LogManager</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html">gridfire::io::SimpleReactionListFileParser</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#a4061e99bd77a3de0d6d9e317bfc74874">m_config</a></td><td class="entry"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html">gridfire::io::SimpleReactionListFileParser</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#acef7eafe3cbea159259f69c88d309b66">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html">gridfire::io::SimpleReactionListFileParser</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#a4df01e3a93e1291d2cde0458545325f8">parse</a>(const std::string &amp;filename) const override</td><td class="entry"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html">gridfire::io::SimpleReactionListFileParser</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#afc8ed91e8c98205c505e3d9f0cff1993">SimpleReactionListFileParser</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html">gridfire::io::SimpleReactionListFileParser</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html#a9b4095d06fad5df3805c92ae97b3eab3">~NetworkFileParser</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html">gridfire::io::NetworkFileParser</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-types">Private Types</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1io_1_1SimpleReactionListFileParser-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::io::SimpleReactionListFileParser Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>A parser for simple text files containing a list of reactions.  
+ <a href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#details">More...</a></p>
+
+<p><code>#include &lt;network_file.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::io::SimpleReactionListFileParser:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1io_1_1SimpleReactionListFileParser__inherit__graph.svg" width="210" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
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+Collaboration diagram for gridfire::io::SimpleReactionListFileParser:</div>
+<div class="dyncontent">
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:afc8ed91e8c98205c505e3d9f0cff1993" id="r_afc8ed91e8c98205c505e3d9f0cff1993"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#afc8ed91e8c98205c505e3d9f0cff1993">SimpleReactionListFileParser</a> ()</td></tr>
+<tr class="memdesc:afc8ed91e8c98205c505e3d9f0cff1993"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html" title="A parser for simple text files containing a list of reactions.">SimpleReactionListFileParser</a>.  <br /></td></tr>
+<tr class="separator:afc8ed91e8c98205c505e3d9f0cff1993"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a4df01e3a93e1291d2cde0458545325f8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Parses a simple reaction list file.  <br /></td></tr>
+<tr class="separator:a4df01e3a93e1291d2cde0458545325f8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1io_1_1NetworkFileParser"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1io_1_1NetworkFileParser')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html">gridfire::io::NetworkFileParser</a></td></tr>
+<tr class="memitem:a9b4095d06fad5df3805c92ae97b3eab3 inherit pub_methods_classgridfire_1_1io_1_1NetworkFileParser" id="r_a9b4095d06fad5df3805c92ae97b3eab3"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html#a9b4095d06fad5df3805c92ae97b3eab3">~NetworkFileParser</a> ()=default</td></tr>
+<tr class="memdesc:a9b4095d06fad5df3805c92ae97b3eab3 inherit pub_methods_classgridfire_1_1io_1_1NetworkFileParser"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for the base class.  <br /></td></tr>
+<tr class="separator:a9b4095d06fad5df3805c92ae97b3eab3 inherit pub_methods_classgridfire_1_1io_1_1NetworkFileParser"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-types" name="pri-types"></a>
+Private Types</h2></td></tr>
+<tr class="memitem:ad913155a5a2a36b29e4ce4ca8d71c036" id="r_ad913155a5a2a36b29e4ce4ca8d71c036"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#ad913155a5a2a36b29e4ce4ca8d71c036">Config</a> = fourdst::config::Config</td></tr>
+<tr class="separator:ad913155a5a2a36b29e4ce4ca8d71c036"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6f8f9a1f54cd2be5ec66c3181be892de" id="r_a6f8f9a1f54cd2be5ec66c3181be892de"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#a6f8f9a1f54cd2be5ec66c3181be892de">LogManager</a> = fourdst::logging::LogManager</td></tr>
+<tr class="separator:a6f8f9a1f54cd2be5ec66c3181be892de"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a4061e99bd77a3de0d6d9e317bfc74874" id="r_a4061e99bd77a3de0d6d9e317bfc74874"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#ad913155a5a2a36b29e4ce4ca8d71c036">Config</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#a4061e99bd77a3de0d6d9e317bfc74874">m_config</a> = Config::getInstance()</td></tr>
+<tr class="separator:a4061e99bd77a3de0d6d9e317bfc74874"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acef7eafe3cbea159259f69c88d309b66" id="r_acef7eafe3cbea159259f69c88d309b66"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#acef7eafe3cbea159259f69c88d309b66">m_logger</a> = LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="separator:acef7eafe3cbea159259f69c88d309b66"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>A parser for simple text files containing a list of reactions. </p>
+<p>This parser reads a file where each line contains a single reaction name. It supports comments (lines starting with '#') and ignores empty lines. </p>
+</div><h2 class="groupheader">Member Typedef Documentation</h2>
+<a id="ad913155a5a2a36b29e4ce4ca8d71c036" name="ad913155a5a2a36b29e4ce4ca8d71c036"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad913155a5a2a36b29e4ce4ca8d71c036">&#9670;&#160;</a></span>Config</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">using <a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#ad913155a5a2a36b29e4ce4ca8d71c036">gridfire::io::SimpleReactionListFileParser::Config</a> =  fourdst::config::Config</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a6f8f9a1f54cd2be5ec66c3181be892de" name="a6f8f9a1f54cd2be5ec66c3181be892de"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6f8f9a1f54cd2be5ec66c3181be892de">&#9670;&#160;</a></span>LogManager</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">using <a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#a6f8f9a1f54cd2be5ec66c3181be892de">gridfire::io::SimpleReactionListFileParser::LogManager</a> =  fourdst::logging::LogManager</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="afc8ed91e8c98205c505e3d9f0cff1993" name="afc8ed91e8c98205c505e3d9f0cff1993"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afc8ed91e8c98205c505e3d9f0cff1993">&#9670;&#160;</a></span>SimpleReactionListFileParser()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::io::SimpleReactionListFileParser::SimpleReactionListFileParser </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructs a <a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html" title="A parser for simple text files containing a list of reactions.">SimpleReactionListFileParser</a>. </p>
+<dl class="section post"><dt>Postcondition</dt><dd>The parser is initialized and ready to parse files. </dd></dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a4df01e3a93e1291d2cde0458545325f8" name="a4df01e3a93e1291d2cde0458545325f8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4df01e3a93e1291d2cde0458545325f8">&#9670;&#160;</a></span>parse()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352">ParsedNetworkData</a> gridfire::io::SimpleReactionListFileParser::parse </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>filename</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Parses a simple reaction list file. </p>
+<p>This method reads the specified file line by line. It trims whitespace from each line, ignores lines that are empty or start with a '#' comment character, and stores the remaining lines as reaction names.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">filename</td><td>The path to the simple reaction list file. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <code>ParsedNetworkData</code> struct containing the list of reaction names.</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the file cannot be opened for reading.</td></tr>
+  </table>
+  </dd>
+</dl>
+<p><b>Algorithm</b> </p><ol type="1">
+<li>Opens the specified file.</li>
+<li>Reads the file line by line.</li>
+<li>For each line, it removes any trailing comments (starting with '#').</li>
+<li>Trims leading and trailing whitespace.</li>
+<li>If the line is not empty, it is added to the list of reaction names.</li>
+<li>Returns the populated <code>ParsedNetworkData</code> struct.</li>
+</ol>
+<p><b>Usage</b> </p><div class="fragment"><div class="line"><a class="code hl_class" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html">SimpleReactionListFileParser</a> parser;</div>
+<div class="line"><a class="code hl_typedef" href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352">ParsedNetworkData</a> data = parser.<a class="code hl_function" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#a4df01e3a93e1291d2cde0458545325f8">parse</a>(<span class="stringliteral">&quot;reactions.txt&quot;</span>);</div>
+<div class="ttc" id="aclassgridfire_1_1io_1_1SimpleReactionListFileParser_html"><div class="ttname"><a href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html">gridfire::io::SimpleReactionListFileParser</a></div><div class="ttdoc">A parser for simple text files containing a list of reactions.</div><div class="ttdef"><b>Definition</b> network_file.h:68</div></div>
+<div class="ttc" id="aclassgridfire_1_1io_1_1SimpleReactionListFileParser_html_a4df01e3a93e1291d2cde0458545325f8"><div class="ttname"><a href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#a4df01e3a93e1291d2cde0458545325f8">gridfire::io::SimpleReactionListFileParser::parse</a></div><div class="ttdeci">ParsedNetworkData parse(const std::string &amp;filename) const override</div><div class="ttdoc">Parses a simple reaction list file.</div><div class="ttdef"><b>Definition</b> network_file.cpp:44</div></div>
+<div class="ttc" id="anamespacegridfire_1_1io_html_abcbdcbd13cfa8c9fbe1b48e8ee2cc352"><div class="ttname"><a href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352">gridfire::io::ParsedNetworkData</a></div><div class="ttdeci">std::vector&lt; std::string &gt; ParsedNetworkData</div><div class="ttdef"><b>Definition</b> network_file.h:12</div></div>
+</div><!-- fragment --> 
+<p>Implements <a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html#a66e8e724c903d6ef4dd1c8103276bdbf">gridfire::io::NetworkFileParser</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a4061e99bd77a3de0d6d9e317bfc74874" name="a4061e99bd77a3de0d6d9e317bfc74874"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4061e99bd77a3de0d6d9e317bfc74874">&#9670;&#160;</a></span>m_config</h2>
+
+<div class="memitem">
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+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
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+          <td class="memname"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#ad913155a5a2a36b29e4ce4ca8d71c036">Config</a>&amp; gridfire::io::SimpleReactionListFileParser::m_config = Config::getInstance()</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#acef7eafe3cbea159259f69c88d309b66">&#9670;&#160;</a></span>m_logger</h2>
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+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::io::SimpleReactionListFileParser::m_logger = LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/io/<a class="el" href="network__file_8h.html">network_file.h</a></li>
+<li>src/lib/io/<a class="el" href="network__file_8cpp.html">network_file.cpp</a></li>
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+</div><!-- doc-content -->
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+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1io.html">io</a></li><li class="navelem"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html">SimpleReactionListFileParser</a></li>
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+    [ "SimpleReactionListFileParser", "classgridfire_1_1io_1_1SimpleReactionListFileParser.html#afc8ed91e8c98205c505e3d9f0cff1993", null ],
+    [ "parse", "classgridfire_1_1io_1_1SimpleReactionListFileParser.html#a4df01e3a93e1291d2cde0458545325f8", null ],
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
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+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::partition::CompositePartitionFunction Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html">gridfire::partition::CompositePartitionFunction</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a7b000d55c7d1f489e54a57f7f4e3808a">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html">gridfire::partition::CompositePartitionFunction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#ad80743933712de627c6a69d06d42ceb5">CompositePartitionFunction</a>(const std::vector&lt; BasePartitionType &gt; &amp;partitionFunctions)</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html">gridfire::partition::CompositePartitionFunction</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#ac1bc5bedabef400fab6aceb477dbc6b9">CompositePartitionFunction</a>(const CompositePartitionFunction &amp;other)</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html">gridfire::partition::CompositePartitionFunction</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a8d6d278fcb5b8478b0e27535f877ee2b">evaluate</a>(int z, int a, double T9) const override</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html">gridfire::partition::CompositePartitionFunction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#ac8900afaa5edd24fcb8eaf19e7379183">evaluateDerivative</a>(int z, int a, double T9) const override</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html">gridfire::partition::CompositePartitionFunction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html">gridfire::partition::CompositePartitionFunction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a85aaac230e9de2fd50d4d453f6d5def8">m_partitionFunctions</a></td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html">gridfire::partition::CompositePartitionFunction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a9aea5eda63b9be4d3b8f65c13d317dcc">m_supportCache</a></td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html">gridfire::partition::CompositePartitionFunction</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a32f397abf9e9ace9f0c721e4e14eb60b">selectPartitionFunction</a>(BasePartitionType type) const</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html">gridfire::partition::CompositePartitionFunction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#ae8908a78f087ea516cdd5a4cdd449a9c">supports</a>(int z, int a) const override</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html">gridfire::partition::CompositePartitionFunction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a66560e21a4a7b08e8da135ce8279ed88">type</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html">gridfire::partition::CompositePartitionFunction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a197a0663dcfb4ab4be3b0e14b98391db">~PartitionFunction</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">gridfire::partition::PartitionFunction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/classgridfire_1_1partition_1_1CompositePartitionFunction.html b/docs/html/classgridfire_1_1partition_1_1CompositePartitionFunction.html
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::partition::CompositePartitionFunction Class Reference</title>
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+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
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+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.9.8 -->
+<script type="text/javascript">
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+});
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+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1partition_1_1CompositePartitionFunction-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::partition::CompositePartitionFunction Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Combines multiple <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html" title="Abstract interface for evaluating nuclear partition functions.">PartitionFunction</a> instances into a single composite strategy.  
+ <a href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#details">More...</a></p>
+
+<p><code>#include &lt;partition_composite.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::partition::CompositePartitionFunction:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1partition_1_1CompositePartitionFunction__inherit__graph.svg" width="220" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::partition::CompositePartitionFunction:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1partition_1_1CompositePartitionFunction__coll__graph.svg" width="100%" height="421"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:ad80743933712de627c6a69d06d42ceb5" id="r_ad80743933712de627c6a69d06d42ceb5"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#ad80743933712de627c6a69d06d42ceb5">CompositePartitionFunction</a> (const std::vector&lt; <a class="el" href="namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728c">BasePartitionType</a> &gt; &amp;partitionFunctions)</td></tr>
+<tr class="separator:ad80743933712de627c6a69d06d42ceb5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac1bc5bedabef400fab6aceb477dbc6b9" id="r_ac1bc5bedabef400fab6aceb477dbc6b9"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#ac1bc5bedabef400fab6aceb477dbc6b9">CompositePartitionFunction</a> (const <a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html">CompositePartitionFunction</a> &amp;other)</td></tr>
+<tr class="separator:ac1bc5bedabef400fab6aceb477dbc6b9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8d6d278fcb5b8478b0e27535f877ee2b" id="r_a8d6d278fcb5b8478b0e27535f877ee2b"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a8d6d278fcb5b8478b0e27535f877ee2b">evaluate</a> (int z, int a, double T9) const override</td></tr>
+<tr class="separator:a8d6d278fcb5b8478b0e27535f877ee2b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac8900afaa5edd24fcb8eaf19e7379183" id="r_ac8900afaa5edd24fcb8eaf19e7379183"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#ac8900afaa5edd24fcb8eaf19e7379183">evaluateDerivative</a> (int z, int a, double T9) const override</td></tr>
+<tr class="separator:ac8900afaa5edd24fcb8eaf19e7379183"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae8908a78f087ea516cdd5a4cdd449a9c" id="r_ae8908a78f087ea516cdd5a4cdd449a9c"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#ae8908a78f087ea516cdd5a4cdd449a9c">supports</a> (int z, int a) const override</td></tr>
+<tr class="separator:ae8908a78f087ea516cdd5a4cdd449a9c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a66560e21a4a7b08e8da135ce8279ed88" id="r_a66560e21a4a7b08e8da135ce8279ed88"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a66560e21a4a7b08e8da135ce8279ed88">type</a> () const override</td></tr>
+<tr class="separator:a66560e21a4a7b08e8da135ce8279ed88"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7b000d55c7d1f489e54a57f7f4e3808a" id="r_a7b000d55c7d1f489e54a57f7f4e3808a"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">PartitionFunction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a7b000d55c7d1f489e54a57f7f4e3808a">clone</a> () const override</td></tr>
+<tr class="separator:a7b000d55c7d1f489e54a57f7f4e3808a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1partition_1_1PartitionFunction"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1partition_1_1PartitionFunction')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">gridfire::partition::PartitionFunction</a></td></tr>
+<tr class="memitem:a197a0663dcfb4ab4be3b0e14b98391db inherit pub_methods_classgridfire_1_1partition_1_1PartitionFunction" id="r_a197a0663dcfb4ab4be3b0e14b98391db"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a197a0663dcfb4ab4be3b0e14b98391db">~PartitionFunction</a> ()=default</td></tr>
+<tr class="memdesc:a197a0663dcfb4ab4be3b0e14b98391db inherit pub_methods_classgridfire_1_1partition_1_1PartitionFunction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:a197a0663dcfb4ab4be3b0e14b98391db inherit pub_methods_classgridfire_1_1partition_1_1PartitionFunction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:a32f397abf9e9ace9f0c721e4e14eb60b" id="r_a32f397abf9e9ace9f0c721e4e14eb60b"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">PartitionFunction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a32f397abf9e9ace9f0c721e4e14eb60b">selectPartitionFunction</a> (<a class="el" href="namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728c">BasePartitionType</a> <a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a66560e21a4a7b08e8da135ce8279ed88">type</a>) const</td></tr>
+<tr class="separator:a32f397abf9e9ace9f0c721e4e14eb60b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:ae0fc1c6abdc86009ba0fc6c9f270ff8b" id="r_ae0fc1c6abdc86009ba0fc6c9f270ff8b"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#ae0fc1c6abdc86009ba0fc6c9f270ff8b">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="separator:ae0fc1c6abdc86009ba0fc6c9f270ff8b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a85aaac230e9de2fd50d4d453f6d5def8" id="r_a85aaac230e9de2fd50d4d453f6d5def8"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">PartitionFunction</a> &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a85aaac230e9de2fd50d4d453f6d5def8">m_partitionFunctions</a></td></tr>
+<tr class="memdesc:a85aaac230e9de2fd50d4d453f6d5def8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of partition functions to use in the composite partition function.  <br /></td></tr>
+<tr class="separator:a85aaac230e9de2fd50d4d453f6d5def8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9aea5eda63b9be4d3b8f65c13d317dcc" id="r_a9aea5eda63b9be4d3b8f65c13d317dcc"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; uint_fast32_t, const <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">PartitionFunction</a> &amp; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a9aea5eda63b9be4d3b8f65c13d317dcc">m_supportCache</a></td></tr>
+<tr class="memdesc:a9aea5eda63b9be4d3b8f65c13d317dcc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Cache mapping isotope keys to supporting partition functions for fast lookup.  <br /></td></tr>
+<tr class="separator:a9aea5eda63b9be4d3b8f65c13d317dcc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Combines multiple <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html" title="Abstract interface for evaluating nuclear partition functions.">PartitionFunction</a> instances into a single composite strategy. </p>
+<p>Maintains an ordered list of sub-functions and delegates evaluation and derivative calls to the first function that supports the requested isotope.</p>
+<p>See <a class="el" href="partition__composite_8cpp.html">partition_composite.cpp</a> for details on sub-function selection and error logging.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If no sub-function supports a given (z,a,T9) in evaluate or evaluateDerivative. </td></tr>
+  </table>
+  </dd>
+</dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="ad80743933712de627c6a69d06d42ceb5" name="ad80743933712de627c6a69d06d42ceb5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad80743933712de627c6a69d06d42ceb5">&#9670;&#160;</a></span>CompositePartitionFunction() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::partition::CompositePartitionFunction::CompositePartitionFunction </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; <a class="el" href="namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728c">BasePartitionType</a> &gt; &amp;&#160;</td>
+          <td class="paramname"><em>partitionFunctions</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<pre class="fragment">       @brief Construct a composite function from specified types.
+
+       Instantiates sub-functions according to the order of types provided.
+       @param partitionFunctions List of BasePartitionType identifiers for sub-functions.
+       @pre partitionFunctions must not be empty.
+       @post m_partitionFunctions contains instances matching each type.
+</pre><ul>
+<li><br  />
+ </li>
+</ul>
+
+</div>
+</div>
+<a id="ac1bc5bedabef400fab6aceb477dbc6b9" name="ac1bc5bedabef400fab6aceb477dbc6b9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac1bc5bedabef400fab6aceb477dbc6b9">&#9670;&#160;</a></span>CompositePartitionFunction() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::partition::CompositePartitionFunction::CompositePartitionFunction </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html">CompositePartitionFunction</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+<pre class="fragment">       @brief Copy constructor.
+
+       Creates deep clones of the sub-functions in another composite.
+       @param other Existing composite to copy from.
+       @post m_partitionFunctions contains clones of other's sub-functions.
+</pre><ul>
+<li><br  />
+ </li>
+</ul>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a7b000d55c7d1f489e54a57f7f4e3808a" name="a7b000d55c7d1f489e54a57f7f4e3808a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7b000d55c7d1f489e54a57f7f4e3808a">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">PartitionFunction</a> &gt; gridfire::partition::CompositePartitionFunction::clone </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<pre class="fragment">       @brief Clone this composite partition function.
+
+       @return Unique pointer to a deep copy of this object.
+</pre><ul>
+<li><br  />
+ </li>
+</ul>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a677a90f992fd56b8718e36655c33ce6d">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="a8d6d278fcb5b8478b0e27535f877ee2b" name="a8d6d278fcb5b8478b0e27535f877ee2b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8d6d278fcb5b8478b0e27535f877ee2b">&#9670;&#160;</a></span>evaluate()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::partition::CompositePartitionFunction::evaluate </td>
+          <td>(</td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>a</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<pre class="fragment">       @brief Evaluate the composite partition function.
+
+       Calls evaluate on the first sub-function supporting the isotope.
+       @param z Atomic number (&gt;=1).
+       @param a Mass number (&gt;=z).
+       @param T9 Temperature in 10^9 K.
+       @return Partition function value from supporting sub-function.
+       @throws std::runtime_error If no sub-function supports (z,a,T9).
+</pre><ul>
+<li><br  />
+ </li>
+</ul>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a08ee79b7d8723b4e00ee1fc9cdfbe817">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="ac8900afaa5edd24fcb8eaf19e7379183" name="ac8900afaa5edd24fcb8eaf19e7379183"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac8900afaa5edd24fcb8eaf19e7379183">&#9670;&#160;</a></span>evaluateDerivative()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::partition::CompositePartitionFunction::evaluateDerivative </td>
+          <td>(</td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>a</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<pre class="fragment">       @brief Evaluate temperature derivative of the composite function.
+
+       Delegates to the first supporting sub-function's derivative.
+       @param z Atomic number.
+       @param a Mass number.
+       @param T9 Temperature in 10^9 K.
+       @return d/dT9 of the partition function.
+       @throws std::runtime_error If no sub-function supports (z,a,T9).
+</pre><ul>
+<li><br  />
+ </li>
+</ul>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a14009bdaca47f3eddf2c6c023845db5a">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="a32f397abf9e9ace9f0c721e4e14eb60b" name="a32f397abf9e9ace9f0c721e4e14eb60b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a32f397abf9e9ace9f0c721e4e14eb60b">&#9670;&#160;</a></span>selectPartitionFunction()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">PartitionFunction</a> &gt; gridfire::partition::CompositePartitionFunction::selectPartitionFunction </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728c">BasePartitionType</a>&#160;</td>
+          <td class="paramname"><em>type</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<pre class="fragment">       @brief Instantiate a sub-function by its type.
+
+       @param type Enumeration value selecting the desired function implementation.
+       @return Unique pointer to a new PartitionFunction instance of the given type.
+       @throws std::runtime_error If the given type is not recognized.
+</pre><ul>
+<li><br  />
+ </li>
+</ul>
+
+</div>
+</div>
+<a id="ae8908a78f087ea516cdd5a4cdd449a9c" name="ae8908a78f087ea516cdd5a4cdd449a9c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae8908a78f087ea516cdd5a4cdd449a9c">&#9670;&#160;</a></span>supports()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::partition::CompositePartitionFunction::supports </td>
+          <td>(</td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>a</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<pre class="fragment">       @brief Check support across all sub-functions.
+
+       @param z Atomic number.
+       @param a Mass number.
+       @return true if any sub-function supports (z,a); false otherwise.
+</pre><ul>
+<li><br  />
+ </li>
+</ul>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a6df4191d10516477371a0384e1e55bf5">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="a66560e21a4a7b08e8da135ce8279ed88" name="a66560e21a4a7b08e8da135ce8279ed88"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a66560e21a4a7b08e8da135ce8279ed88">&#9670;&#160;</a></span>type()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::partition::CompositePartitionFunction::type </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<pre class="fragment">       @brief Get composite type identifier.
+
+       Concatenates the type() strings of all sub-functions.
+       @return A string like "CompositePartitionFunction(func1, func2, ...)".
+</pre><ul>
+<li><br  />
+ </li>
+</ul>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#ab0c67985a972707eac0ebc64417dfb97">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="ae0fc1c6abdc86009ba0fc6c9f270ff8b" name="ae0fc1c6abdc86009ba0fc6c9f270ff8b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae0fc1c6abdc86009ba0fc6c9f270ff8b">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::partition::CompositePartitionFunction::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
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+      <table class="memname">
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+<li>src/include/gridfire/partition/composite/<a class="el" href="partition__composite_8h.html">partition_composite.h</a></li>
+<li>src/lib/partition/composite/<a class="el" href="partition__composite_8cpp.html">partition_composite.cpp</a></li>
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+    [ "supports", "classgridfire_1_1partition_1_1CompositePartitionFunction.html#ae8908a78f087ea516cdd5a4cdd449a9c", null ],
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+  <div class="headertitle"><div class="title">gridfire::partition::GroundStatePartitionFunction Member List</div></div>
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+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html">gridfire::partition::GroundStatePartitionFunction</a>, including all inherited members.</p>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#ade2b0f92a3d9b74968166793466a11e4">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html">gridfire::partition::GroundStatePartitionFunction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#af16da0015489307eb64639efbafbbdd5">evaluate</a>(const int z, const int a, const double T9) const override</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html">gridfire::partition::GroundStatePartitionFunction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#a0eff10c7b134d9d4081ad72bbc785c5b">evaluateDerivative</a>(const int z, const int a, const double T9) const override</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html">gridfire::partition::GroundStatePartitionFunction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#a8afa2aee993eb3ed8d01c887d39b57eb">GroundStatePartitionFunction</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html">gridfire::partition::GroundStatePartitionFunction</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#af7f710edff96b1623c517ddab137c245">m_ground_state_spin</a></td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html">gridfire::partition::GroundStatePartitionFunction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#aff8f82f918380795e98c30a00fcd939b">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html">gridfire::partition::GroundStatePartitionFunction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#a0e75ec9b97529783e07953aaf7d70f68">make_key</a>(int z, int a)</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html">gridfire::partition::GroundStatePartitionFunction</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#a49b18aae58eb6250aaa23d43d55f02bd">supports</a>(const int z, const int a) const override</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html">gridfire::partition::GroundStatePartitionFunction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#af8d0146fc2afedf3785ae9ec932d3250">type</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html">gridfire::partition::GroundStatePartitionFunction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a197a0663dcfb4ab4be3b0e14b98391db">~PartitionFunction</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">gridfire::partition::PartitionFunction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-static-methods">Static Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1partition_1_1GroundStatePartitionFunction-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::partition::GroundStatePartitionFunction Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Partition function implementation for nuclear ground states.  
+ <a href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#details">More...</a></p>
+
+<p><code>#include &lt;partition_ground.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::partition::GroundStatePartitionFunction:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1partition_1_1GroundStatePartitionFunction__inherit__graph.svg" width="231" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::partition::GroundStatePartitionFunction:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1partition_1_1GroundStatePartitionFunction__coll__graph.svg" width="355" height="154"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a8afa2aee993eb3ed8d01c887d39b57eb" id="r_a8afa2aee993eb3ed8d01c887d39b57eb"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#a8afa2aee993eb3ed8d01c887d39b57eb">GroundStatePartitionFunction</a> ()</td></tr>
+<tr class="separator:a8afa2aee993eb3ed8d01c887d39b57eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af16da0015489307eb64639efbafbbdd5" id="r_af16da0015489307eb64639efbafbbdd5"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#af16da0015489307eb64639efbafbbdd5">evaluate</a> (const int z, const int a, const double T9) const override</td></tr>
+<tr class="separator:af16da0015489307eb64639efbafbbdd5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0eff10c7b134d9d4081ad72bbc785c5b" id="r_a0eff10c7b134d9d4081ad72bbc785c5b"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#a0eff10c7b134d9d4081ad72bbc785c5b">evaluateDerivative</a> (const int z, const int a, const double T9) const override</td></tr>
+<tr class="separator:a0eff10c7b134d9d4081ad72bbc785c5b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a49b18aae58eb6250aaa23d43d55f02bd" id="r_a49b18aae58eb6250aaa23d43d55f02bd"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#a49b18aae58eb6250aaa23d43d55f02bd">supports</a> (const int z, const int a) const override</td></tr>
+<tr class="separator:a49b18aae58eb6250aaa23d43d55f02bd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af8d0146fc2afedf3785ae9ec932d3250" id="r_af8d0146fc2afedf3785ae9ec932d3250"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#af8d0146fc2afedf3785ae9ec932d3250">type</a> () const override</td></tr>
+<tr class="separator:af8d0146fc2afedf3785ae9ec932d3250"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ade2b0f92a3d9b74968166793466a11e4" id="r_ade2b0f92a3d9b74968166793466a11e4"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">PartitionFunction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#ade2b0f92a3d9b74968166793466a11e4">clone</a> () const override</td></tr>
+<tr class="separator:ade2b0f92a3d9b74968166793466a11e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1partition_1_1PartitionFunction"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1partition_1_1PartitionFunction')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">gridfire::partition::PartitionFunction</a></td></tr>
+<tr class="memitem:a197a0663dcfb4ab4be3b0e14b98391db inherit pub_methods_classgridfire_1_1partition_1_1PartitionFunction" id="r_a197a0663dcfb4ab4be3b0e14b98391db"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a197a0663dcfb4ab4be3b0e14b98391db">~PartitionFunction</a> ()=default</td></tr>
+<tr class="memdesc:a197a0663dcfb4ab4be3b0e14b98391db inherit pub_methods_classgridfire_1_1partition_1_1PartitionFunction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:a197a0663dcfb4ab4be3b0e14b98391db inherit pub_methods_classgridfire_1_1partition_1_1PartitionFunction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-static-methods" name="pri-static-methods"></a>
+Static Private Member Functions</h2></td></tr>
+<tr class="memitem:a0e75ec9b97529783e07953aaf7d70f68" id="r_a0e75ec9b97529783e07953aaf7d70f68"><td class="memItemLeft" align="right" valign="top">static constexpr int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#a0e75ec9b97529783e07953aaf7d70f68">make_key</a> (int z, int a)</td></tr>
+<tr class="separator:a0e75ec9b97529783e07953aaf7d70f68"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:aff8f82f918380795e98c30a00fcd939b" id="r_aff8f82f918380795e98c30a00fcd939b"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#aff8f82f918380795e98c30a00fcd939b">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="separator:aff8f82f918380795e98c30a00fcd939b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af7f710edff96b1623c517ddab137c245" id="r_af7f710edff96b1623c517ddab137c245"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; int, double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#af7f710edff96b1623c517ddab137c245">m_ground_state_spin</a></td></tr>
+<tr class="separator:af7f710edff96b1623c517ddab137c245"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Partition function implementation for nuclear ground states. </p>
+<p>Computes the partition function as (2J + 1) based on the ground state spin J of each isotope. The temperature derivative is always zero. Ground state spins are loaded from the fourdst::atomic::species registry at construction. </p><dl class="section see"><dt>See also</dt><dd><a class="el" href="partition__ground_8cpp.html">partition_ground.cpp</a> for implementation details. </dd></dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a8afa2aee993eb3ed8d01c887d39b57eb" name="a8afa2aee993eb3ed8d01c887d39b57eb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8afa2aee993eb3ed8d01c887d39b57eb">&#9670;&#160;</a></span>GroundStatePartitionFunction()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::partition::GroundStatePartitionFunction::GroundStatePartitionFunction </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+<pre class="fragment">       @brief Construct and populate the ground state spin map.
+</pre><ul>
+<li>* Loads spins for all isotopes from the atomic species registry into m_ground_state_spin. <dl class="section pre"><dt>Precondition</dt><dd>atomic::species registry is initialized and non-empty. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>m_ground_state_spin contains entries for each isotope.</dd></dl>
+</li>
+<li><br  />
+ </li>
+</ul>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ade2b0f92a3d9b74968166793466a11e4" name="ade2b0f92a3d9b74968166793466a11e4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ade2b0f92a3d9b74968166793466a11e4">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">PartitionFunction</a> &gt; gridfire::partition::GroundStatePartitionFunction::clone </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<pre class="fragment">       @brief Create a deep copy of this partition function.
+       @return Unique_ptr to a new GroundStatePartitionFunction cloned from this object.
+       @post Caller owns the returned instance.
+</pre><ul>
+<li><br  />
+ </li>
+</ul>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a677a90f992fd56b8718e36655c33ce6d">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="af16da0015489307eb64639efbafbbdd5" name="af16da0015489307eb64639efbafbbdd5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af16da0015489307eb64639efbafbbdd5">&#9670;&#160;</a></span>evaluate()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::partition::GroundStatePartitionFunction::evaluate </td>
+          <td>(</td>
+          <td class="paramtype">const int&#160;</td>
+          <td class="paramname"><em>z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const int&#160;</td>
+          <td class="paramname"><em>a</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const double&#160;</td>
+          <td class="paramname"><em>T9</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<pre class="fragment">       @brief Evaluate the ground state partition function.
+</pre><ul>
+<li>* <dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">z</td><td>Proton number (atomic number) of the isotope; must be &gt;= 1. </td></tr>
+    <tr><td class="paramname">a</td><td>Mass number of the isotope; must be &gt;= z. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K; unused for ground state. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section pre"><dt>Precondition</dt><dd>supports(z,a) returns true. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>No side effects. </dd></dl>
+<dl class="section return"><dt>Returns</dt><dd>Dimensionless partition function value = 2*spin + 1. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::out_of_range</td><td>If the isotope key is not found in m_ground_state_spin.</td></tr>
+  </table>
+  </dd>
+</dl>
+</li>
+<li><br  />
+ </li>
+</ul>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a08ee79b7d8723b4e00ee1fc9cdfbe817">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="a0eff10c7b134d9d4081ad72bbc785c5b" name="a0eff10c7b134d9d4081ad72bbc785c5b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0eff10c7b134d9d4081ad72bbc785c5b">&#9670;&#160;</a></span>evaluateDerivative()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::partition::GroundStatePartitionFunction::evaluateDerivative </td>
+          <td>(</td>
+          <td class="paramtype">const int&#160;</td>
+          <td class="paramname"><em>z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const int&#160;</td>
+          <td class="paramname"><em>a</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const double&#160;</td>
+          <td class="paramname"><em>T9</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<pre class="fragment">       @brief Evaluate the temperature derivative of the ground state partition function.
+</pre><ul>
+<li>* Always returns zero as ground state has no temperature dependence. <dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">z</td><td>Proton number of the isotope; must be supported. </td></tr>
+    <tr><td class="paramname">a</td><td>Mass number of the isotope; must be supported. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K; unused. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section pre"><dt>Precondition</dt><dd>supports(z,a) returns true. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>No side effects. </dd></dl>
+<dl class="section return"><dt>Returns</dt><dd>Zero. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::out_of_range</td><td>If the isotope key is not found.</td></tr>
+  </table>
+  </dd>
+</dl>
+</li>
+<li><br  />
+ </li>
+</ul>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a14009bdaca47f3eddf2c6c023845db5a">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="a0e75ec9b97529783e07953aaf7d70f68" name="a0e75ec9b97529783e07953aaf7d70f68"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0e75ec9b97529783e07953aaf7d70f68">&#9670;&#160;</a></span>make_key()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">constexpr int gridfire::partition::GroundStatePartitionFunction::make_key </td>
+          <td>(</td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>a</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">constexpr</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<pre class="fragment">       @brief Generate a unique lookup key for an isotope.
+</pre><ul>
+<li>* Combines atomic number z and mass number an into a single integer. <dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">z</td><td>Proton number of the isotope. </td></tr>
+    <tr><td class="paramname">a</td><td>Mass number of the isotope; should be &lt; 1000 to avoid collisions. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section pre"><dt>Precondition</dt><dd>a &lt; 1000. </dd></dl>
+<dl class="section return"><dt>Returns</dt><dd>Integer key = z * 1000 + a.</dd></dl>
+</li>
+<li><br  />
+ </li>
+</ul>
+
+</div>
+</div>
+<a id="a49b18aae58eb6250aaa23d43d55f02bd" name="a49b18aae58eb6250aaa23d43d55f02bd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a49b18aae58eb6250aaa23d43d55f02bd">&#9670;&#160;</a></span>supports()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::partition::GroundStatePartitionFunction::supports </td>
+          <td>(</td>
+          <td class="paramtype">const int&#160;</td>
+          <td class="paramname"><em>z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const int&#160;</td>
+          <td class="paramname"><em>a</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<pre class="fragment">       @brief Check if ground state data exists for the given isotope.
+</pre><ul>
+<li>* <dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">z</td><td>Proton number of the isotope. </td></tr>
+    <tr><td class="paramname">a</td><td>Mass number of the isotope. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if m_ground_state_spin contains the key; false otherwise. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>No side effects.</dd></dl>
+</li>
+<li><br  />
+ </li>
+</ul>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a6df4191d10516477371a0384e1e55bf5">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="af8d0146fc2afedf3785ae9ec932d3250" name="af8d0146fc2afedf3785ae9ec932d3250"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af8d0146fc2afedf3785ae9ec932d3250">&#9670;&#160;</a></span>type()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::partition::GroundStatePartitionFunction::type </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<pre class="fragment">       @brief Get the type identifier of this partition function.
+       @return The string literal "GroundState".
+       @post No side effects.
+</pre><ul>
+<li><br  />
+ </li>
+</ul>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#ab0c67985a972707eac0ebc64417dfb97">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="af7f710edff96b1623c517ddab137c245" name="af7f710edff96b1623c517ddab137c245"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af7f710edff96b1623c517ddab137c245">&#9670;&#160;</a></span>m_ground_state_spin</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;int, double&gt; gridfire::partition::GroundStatePartitionFunction::m_ground_state_spin</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aff8f82f918380795e98c30a00fcd939b" name="aff8f82f918380795e98c30a00fcd939b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aff8f82f918380795e98c30a00fcd939b">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::partition::GroundStatePartitionFunction::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/partition/<a class="el" href="partition__ground_8h.html">partition_ground.h</a></li>
+<li>src/lib/partition/<a class="el" href="partition__ground_8cpp.html">partition_ground.cpp</a></li>
+</ul>
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+</div><!-- doc-content -->
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+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1partition.html">partition</a></li><li class="navelem"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html">GroundStatePartitionFunction</a></li>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a677a90f992fd56b8718e36655c33ce6d">clone</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">gridfire::partition::PartitionFunction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a08ee79b7d8723b4e00ee1fc9cdfbe817">evaluate</a>(int z, int a, double T9) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">gridfire::partition::PartitionFunction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
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+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a6df4191d10516477371a0384e1e55bf5">supports</a>(int z, int a) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">gridfire::partition::PartitionFunction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#ab0c67985a972707eac0ebc64417dfb97">type</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">gridfire::partition::PartitionFunction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a197a0663dcfb4ab4be3b0e14b98391db">~PartitionFunction</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">gridfire::partition::PartitionFunction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1partition_1_1PartitionFunction-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::partition::PartitionFunction Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div></div>
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+
+<p>Abstract interface for evaluating nuclear partition functions.  
+ <a href="classgridfire_1_1partition_1_1PartitionFunction.html#details">More...</a></p>
+
+<p><code>#include &lt;partition_abstract.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::partition::PartitionFunction:</div>
+<div class="dyncontent">
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
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+Public Member Functions</h2></td></tr>
+<tr class="memitem:a197a0663dcfb4ab4be3b0e14b98391db" id="r_a197a0663dcfb4ab4be3b0e14b98391db"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a197a0663dcfb4ab4be3b0e14b98391db">~PartitionFunction</a> ()=default</td></tr>
+<tr class="memdesc:a197a0663dcfb4ab4be3b0e14b98391db"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:a197a0663dcfb4ab4be3b0e14b98391db"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a08ee79b7d8723b4e00ee1fc9cdfbe817" id="r_a08ee79b7d8723b4e00ee1fc9cdfbe817"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a08ee79b7d8723b4e00ee1fc9cdfbe817">evaluate</a> (int z, int a, double T9) const =0</td></tr>
+<tr class="memdesc:a08ee79b7d8723b4e00ee1fc9cdfbe817"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the partition function for a given isotope.  <br /></td></tr>
+<tr class="separator:a08ee79b7d8723b4e00ee1fc9cdfbe817"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a14009bdaca47f3eddf2c6c023845db5a" id="r_a14009bdaca47f3eddf2c6c023845db5a"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a14009bdaca47f3eddf2c6c023845db5a">evaluateDerivative</a> (int z, int a, double T9) const =0</td></tr>
+<tr class="memdesc:a14009bdaca47f3eddf2c6c023845db5a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the temperature derivative of the partition function.  <br /></td></tr>
+<tr class="separator:a14009bdaca47f3eddf2c6c023845db5a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6df4191d10516477371a0384e1e55bf5" id="r_a6df4191d10516477371a0384e1e55bf5"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a6df4191d10516477371a0384e1e55bf5">supports</a> (int z, int a) const =0</td></tr>
+<tr class="memdesc:a6df4191d10516477371a0384e1e55bf5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if this partition function supports an isotope.  <br /></td></tr>
+<tr class="separator:a6df4191d10516477371a0384e1e55bf5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab0c67985a972707eac0ebc64417dfb97" id="r_ab0c67985a972707eac0ebc64417dfb97"><td class="memItemLeft" align="right" valign="top">virtual std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#ab0c67985a972707eac0ebc64417dfb97">type</a> () const =0</td></tr>
+<tr class="memdesc:ab0c67985a972707eac0ebc64417dfb97"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the human-readable type of this partition function.  <br /></td></tr>
+<tr class="separator:ab0c67985a972707eac0ebc64417dfb97"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a677a90f992fd56b8718e36655c33ce6d" id="r_a677a90f992fd56b8718e36655c33ce6d"><td class="memItemLeft" align="right" valign="top">virtual std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">PartitionFunction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a677a90f992fd56b8718e36655c33ce6d">clone</a> () const =0</td></tr>
+<tr class="memdesc:a677a90f992fd56b8718e36655c33ce6d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Create a deep copy of this <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html" title="Abstract interface for evaluating nuclear partition functions.">PartitionFunction</a>.  <br /></td></tr>
+<tr class="separator:a677a90f992fd56b8718e36655c33ce6d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Abstract interface for evaluating nuclear partition functions. </p>
+<p>Provides methods to compute the partition function and its temperature derivative for a given isotope, to query if the function supports that isotope, and to clone the function object. Concrete implementations must provide temperature- dependent statistical models. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a197a0663dcfb4ab4be3b0e14b98391db" name="a197a0663dcfb4ab4be3b0e14b98391db"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a197a0663dcfb4ab4be3b0e14b98391db">&#9670;&#160;</a></span>~PartitionFunction()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual gridfire::partition::PartitionFunction::~PartitionFunction </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Virtual destructor. </p>
+<p>Ensures proper cleanup in derived classes. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a677a90f992fd56b8718e36655c33ce6d" name="a677a90f992fd56b8718e36655c33ce6d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a677a90f992fd56b8718e36655c33ce6d">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">PartitionFunction</a> &gt; gridfire::partition::PartitionFunction::clone </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Create a deep copy of this <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html" title="Abstract interface for evaluating nuclear partition functions.">PartitionFunction</a>. </p>
+<dl class="section return"><dt>Returns</dt><dd>Unique pointer to a new <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html" title="Abstract interface for evaluating nuclear partition functions.">PartitionFunction</a> instance with identical state. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The caller owns the returned object and must manage its lifetime. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a7b000d55c7d1f489e54a57f7f4e3808a">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#ade2b0f92a3d9b74968166793466a11e4">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#ad229cac0a84df5ebbcaf0550f83debf6">gridfire::partition::RauscherThielemannPartitionFunction</a>, and <a class="el" href="classPyPartitionFunction.html#af918b357e38fb82499ad53584557c43d">PyPartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="a08ee79b7d8723b4e00ee1fc9cdfbe817" name="a08ee79b7d8723b4e00ee1fc9cdfbe817"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a08ee79b7d8723b4e00ee1fc9cdfbe817">&#9670;&#160;</a></span>evaluate()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual double gridfire::partition::PartitionFunction::evaluate </td>
+          <td>(</td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>a</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate the partition function for a given isotope. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">z</td><td>Proton number (atomic number) of the isotope; must be &gt;= 1. </td></tr>
+    <tr><td class="paramname">a</td><td>Mass number of the isotope; must be &gt;= z. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K; must be &gt; 0. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Partition function value (dimensionless) at the specified temperature. </dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>Derived implementation supports (z, a) and T9 &gt; 0. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>No side effects; pure function. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#af16da0015489307eb64639efbafbbdd5">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a8d6d278fcb5b8478b0e27535f877ee2b">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#aebe49d06b50a18ea4484ff15cb301681">gridfire::partition::RauscherThielemannPartitionFunction</a>, and <a class="el" href="classPyPartitionFunction.html#a83aca0bc261734b7d3df8269f730c69b">PyPartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="a14009bdaca47f3eddf2c6c023845db5a" name="a14009bdaca47f3eddf2c6c023845db5a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a14009bdaca47f3eddf2c6c023845db5a">&#9670;&#160;</a></span>evaluateDerivative()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual double gridfire::partition::PartitionFunction::evaluateDerivative </td>
+          <td>(</td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>a</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate the temperature derivative of the partition function. </p>
+<p>Computes d/dT (partition function) at the given parameters.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">z</td><td>Proton number (atomic number) of the isotope; must be &gt;= 1. </td></tr>
+    <tr><td class="paramname">a</td><td>Mass number of the isotope; must be &gt;= z. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K; must be &gt; 0. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Temperature derivative of the partition function. </dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>Derived implementation supports (z, a) and T9 &gt; 0. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>No side effects; pure function. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#a0eff10c7b134d9d4081ad72bbc785c5b">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#ac8900afaa5edd24fcb8eaf19e7379183">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#aaa1e11579b44a88c5f18943cc303c4b4">gridfire::partition::RauscherThielemannPartitionFunction</a>, and <a class="el" href="classPyPartitionFunction.html#a260df9689bf698970ebf5104977a3dcf">PyPartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="a6df4191d10516477371a0384e1e55bf5" name="a6df4191d10516477371a0384e1e55bf5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6df4191d10516477371a0384e1e55bf5">&#9670;&#160;</a></span>supports()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual bool gridfire::partition::PartitionFunction::supports </td>
+          <td>(</td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>a</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Check if this partition function supports an isotope. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">z</td><td>Proton number of the isotope. </td></tr>
+    <tr><td class="paramname">a</td><td>Mass number of the isotope. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if evaluate and evaluateDerivative can be called for this isotope; false otherwise. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>No side effects. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#a49b18aae58eb6250aaa23d43d55f02bd">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#ae8908a78f087ea516cdd5a4cdd449a9c">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a588a11c654751765b04d6425c99041f5">gridfire::partition::RauscherThielemannPartitionFunction</a>, and <a class="el" href="classPyPartitionFunction.html#a0f288a01a3ed7fb92fff5d9fd7d56aa8">PyPartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="ab0c67985a972707eac0ebc64417dfb97" name="ab0c67985a972707eac0ebc64417dfb97"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab0c67985a972707eac0ebc64417dfb97">&#9670;&#160;</a></span>type()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::string gridfire::partition::PartitionFunction::type </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get the human-readable type of this partition function. </p>
+<dl class="section return"><dt>Returns</dt><dd>String identifier for the partition function implementation. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>No side effects. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a66560e21a4a7b08e8da135ce8279ed88">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#af8d0146fc2afedf3785ae9ec932d3250">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a3aa478acf12e09b6dd268f744071b2a0">gridfire::partition::RauscherThielemannPartitionFunction</a>, and <a class="el" href="classPyPartitionFunction.html#a07f4d0ff83822dd2800897161d2a3717">PyPartitionFunction</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/partition/<a class="el" href="partition__abstract_8h.html">partition_abstract.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1partition.html">partition</a></li><li class="navelem"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">PartitionFunction</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
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new file mode 100644
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+var classgridfire_1_1partition_1_1PartitionFunction =
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+    [ "clone", "classgridfire_1_1partition_1_1PartitionFunction.html#a677a90f992fd56b8718e36655c33ce6d", null ],
+    [ "evaluate", "classgridfire_1_1partition_1_1PartitionFunction.html#a08ee79b7d8723b4e00ee1fc9cdfbe817", null ],
+    [ "evaluateDerivative", "classgridfire_1_1partition_1_1PartitionFunction.html#a14009bdaca47f3eddf2c6c023845db5a", null ],
+    [ "supports", "classgridfire_1_1partition_1_1PartitionFunction.html#a6df4191d10516477371a0384e1e55bf5", null ],
+    [ "type", "classgridfire_1_1partition_1_1PartitionFunction.html#ab0c67985a972707eac0ebc64417dfb97", null ]
+];
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+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html">gridfire::partition::RauscherThielemannPartitionFunction</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a7002ebbef966f89b2426f5ea0df33329ad8c6323fcc54dfc5319fbd935ae4f75d">BACK</a> enum value</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html">gridfire::partition::RauscherThielemannPartitionFunction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a7002ebbef966f89b2426f5ea0df33329">Bounds</a> enum name</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html">gridfire::partition::RauscherThielemannPartitionFunction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#ad229cac0a84df5ebbcaf0550f83debf6">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html">gridfire::partition::RauscherThielemannPartitionFunction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#aebe49d06b50a18ea4484ff15cb301681">evaluate</a>(int z, int a, double T9) const override</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html">gridfire::partition::RauscherThielemannPartitionFunction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#aaa1e11579b44a88c5f18943cc303c4b4">evaluateDerivative</a>(int z, int a, double T9) const override</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html">gridfire::partition::RauscherThielemannPartitionFunction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a12058e121981294f447e69a467fd84cd">find</a>(int z, int a, double T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html">gridfire::partition::RauscherThielemannPartitionFunction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a7002ebbef966f89b2426f5ea0df33329aa692ae3131928d57ddcd2408d6b44d71">FRONT</a> enum value</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html">gridfire::partition::RauscherThielemannPartitionFunction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a3baed110ab1b12e22071dc2d92c55db9">get_interpolation_points</a>(const size_t upper_index, const size_t lower_index, const std::array&lt; double, 24 &gt; &amp;normalized_g_values)</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html">gridfire::partition::RauscherThielemannPartitionFunction</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a57384ffb1c81cf982614d90e23b173b6">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html">gridfire::partition::RauscherThielemannPartitionFunction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a50ce19df4c12e22bbcb61422248a4038">m_partitionData</a></td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html">gridfire::partition::RauscherThielemannPartitionFunction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#ac58b95c8530f69f063c8ed8293487aec">make_key</a>(int z, int a)</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html">gridfire::partition::RauscherThielemannPartitionFunction</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a7002ebbef966f89b2426f5ea0df33329abb276a700ba6a5b912fa0bf0a668d735">MIDDLE</a> enum value</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html">gridfire::partition::RauscherThielemannPartitionFunction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#ae67464baee3b12cdc0470be74524866c">RauscherThielemannPartitionFunction</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html">gridfire::partition::RauscherThielemannPartitionFunction</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a588a11c654751765b04d6425c99041f5">supports</a>(int z, int a) const override</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html">gridfire::partition::RauscherThielemannPartitionFunction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a3aa478acf12e09b6dd268f744071b2a0">type</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html">gridfire::partition::RauscherThielemannPartitionFunction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a197a0663dcfb4ab4be3b0e14b98391db">~PartitionFunction</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">gridfire::partition::PartitionFunction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-types">Private Types</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#pri-static-methods">Static Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::partition::RauscherThielemannPartitionFunction Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Partition function using Rauscher-Thielemann tabulated normalized G-values.  
+ <a href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#details">More...</a></p>
+
+<p><code>#include &lt;partition_rauscher_thielemann.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::partition::RauscherThielemannPartitionFunction:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction__inherit__graph.svg" width="232" height="154"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::partition::RauscherThielemannPartitionFunction:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction__coll__graph.svg" width="100%" height="408"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1IdentifiedIsotope.html">IdentifiedIsotope</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1InterpolationPoints.html">InterpolationPoints</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1IsotopeData.html">IsotopeData</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:ae67464baee3b12cdc0470be74524866c" id="r_ae67464baee3b12cdc0470be74524866c"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#ae67464baee3b12cdc0470be74524866c">RauscherThielemannPartitionFunction</a> ()</td></tr>
+<tr class="memdesc:ae67464baee3b12cdc0470be74524866c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct and populate partition data.  <br /></td></tr>
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+<tr class="memdesc:aebe49d06b50a18ea4484ff15cb301681"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate partition function for isotope at temperature.  <br /></td></tr>
+<tr class="separator:aebe49d06b50a18ea4484ff15cb301681"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aaa1e11579b44a88c5f18943cc303c4b4" id="r_aaa1e11579b44a88c5f18943cc303c4b4"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#aaa1e11579b44a88c5f18943cc303c4b4">evaluateDerivative</a> (int z, int a, double T9) const override</td></tr>
+<tr class="memdesc:aaa1e11579b44a88c5f18943cc303c4b4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate temperature derivative of partition function.  <br /></td></tr>
+<tr class="separator:aaa1e11579b44a88c5f18943cc303c4b4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a588a11c654751765b04d6425c99041f5" id="r_a588a11c654751765b04d6425c99041f5"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a588a11c654751765b04d6425c99041f5">supports</a> (int z, int a) const override</td></tr>
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+<tr class="separator:a588a11c654751765b04d6425c99041f5"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a3aa478acf12e09b6dd268f744071b2a0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get type identifier for this partition function.  <br /></td></tr>
+<tr class="separator:a3aa478acf12e09b6dd268f744071b2a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:ad229cac0a84df5ebbcaf0550f83debf6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Clone this partition function instance.  <br /></td></tr>
+<tr class="separator:ad229cac0a84df5ebbcaf0550f83debf6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1partition_1_1PartitionFunction"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1partition_1_1PartitionFunction')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">gridfire::partition::PartitionFunction</a></td></tr>
+<tr class="memitem:a197a0663dcfb4ab4be3b0e14b98391db inherit pub_methods_classgridfire_1_1partition_1_1PartitionFunction" id="r_a197a0663dcfb4ab4be3b0e14b98391db"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a197a0663dcfb4ab4be3b0e14b98391db">~PartitionFunction</a> ()=default</td></tr>
+<tr class="memdesc:a197a0663dcfb4ab4be3b0e14b98391db inherit pub_methods_classgridfire_1_1partition_1_1PartitionFunction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:a197a0663dcfb4ab4be3b0e14b98391db inherit pub_methods_classgridfire_1_1partition_1_1PartitionFunction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-types" name="pri-types"></a>
+Private Types</h2></td></tr>
+<tr class="memitem:a7002ebbef966f89b2426f5ea0df33329" id="r_a7002ebbef966f89b2426f5ea0df33329"><td class="memItemLeft" align="right" valign="top">enum &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a7002ebbef966f89b2426f5ea0df33329">Bounds</a> { <a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a7002ebbef966f89b2426f5ea0df33329aa692ae3131928d57ddcd2408d6b44d71">FRONT</a>
+, <a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a7002ebbef966f89b2426f5ea0df33329ad8c6323fcc54dfc5319fbd935ae4f75d">BACK</a>
+, <a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a7002ebbef966f89b2426f5ea0df33329abb276a700ba6a5b912fa0bf0a668d735">MIDDLE</a>
+ }</td></tr>
+<tr class="memdesc:a7002ebbef966f89b2426f5ea0df33329"><td class="mdescLeft">&#160;</td><td class="mdescRight">Indicator for temperature grid bound position.  <a href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a7002ebbef966f89b2426f5ea0df33329">More...</a><br /></td></tr>
+<tr class="separator:a7002ebbef966f89b2426f5ea0df33329"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:a12058e121981294f447e69a467fd84cd" id="r_a12058e121981294f447e69a467fd84cd"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1IdentifiedIsotope.html">IdentifiedIsotope</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a12058e121981294f447e69a467fd84cd">find</a> (int z, int a, double T9) const</td></tr>
+<tr class="memdesc:a12058e121981294f447e69a467fd84cd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Identify isotope entry and grid indices for given T9.  <br /></td></tr>
+<tr class="separator:a12058e121981294f447e69a467fd84cd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-static-methods" name="pri-static-methods"></a>
+Static Private Member Functions</h2></td></tr>
+<tr class="memitem:a3baed110ab1b12e22071dc2d92c55db9" id="r_a3baed110ab1b12e22071dc2d92c55db9"><td class="memItemLeft" align="right" valign="top">static <a class="el" href="structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1InterpolationPoints.html">InterpolationPoints</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a3baed110ab1b12e22071dc2d92c55db9">get_interpolation_points</a> (const size_t upper_index, const size_t lower_index, const std::array&lt; double, 24 &gt; &amp;normalized_g_values)</td></tr>
+<tr class="memdesc:a3baed110ab1b12e22071dc2d92c55db9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get interpolation points from normalized G array.  <br /></td></tr>
+<tr class="separator:a3baed110ab1b12e22071dc2d92c55db9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac58b95c8530f69f063c8ed8293487aec" id="r_ac58b95c8530f69f063c8ed8293487aec"><td class="memItemLeft" align="right" valign="top">static constexpr int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#ac58b95c8530f69f063c8ed8293487aec">make_key</a> (int z, int a)</td></tr>
+<tr class="memdesc:ac58b95c8530f69f063c8ed8293487aec"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate integer key for isotope (z,a).  <br /></td></tr>
+<tr class="separator:ac58b95c8530f69f063c8ed8293487aec"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a57384ffb1c81cf982614d90e23b173b6" id="r_a57384ffb1c81cf982614d90e23b173b6"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a57384ffb1c81cf982614d90e23b173b6">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="separator:a57384ffb1c81cf982614d90e23b173b6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a50ce19df4c12e22bbcb61422248a4038" id="r_a50ce19df4c12e22bbcb61422248a4038"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; int, <a class="el" href="structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1IsotopeData.html">IsotopeData</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a50ce19df4c12e22bbcb61422248a4038">m_partitionData</a></td></tr>
+<tr class="memdesc:a50ce19df4c12e22bbcb61422248a4038"><td class="mdescLeft">&#160;</td><td class="mdescRight">Map of isotope key to data.  <br /></td></tr>
+<tr class="separator:a50ce19df4c12e22bbcb61422248a4038"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Partition function using Rauscher-Thielemann tabulated normalized G-values. </p>
+<p>Loads isotope partition data from embedded records and computes values by selecting boundary data or interpolating between grid points on a fixed T9 grid. Implementation in <a class="el" href="partition__rauscher__thielemann_8cpp.html">partition_rauscher_thielemann.cpp</a>.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::out_of_range</td><td>If requested isotope data is missing. </td></tr>
+  </table>
+  </dd>
+</dl>
+</div><h2 class="groupheader">Member Enumeration Documentation</h2>
+<a id="a7002ebbef966f89b2426f5ea0df33329" name="a7002ebbef966f89b2426f5ea0df33329"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7002ebbef966f89b2426f5ea0df33329">&#9670;&#160;</a></span>Bounds</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">enum <a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a7002ebbef966f89b2426f5ea0df33329">gridfire::partition::RauscherThielemannPartitionFunction::Bounds</a></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Indicator for temperature grid bound position. </p>
+<table class="fieldtable">
+<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><a id="a7002ebbef966f89b2426f5ea0df33329aa692ae3131928d57ddcd2408d6b44d71" name="a7002ebbef966f89b2426f5ea0df33329aa692ae3131928d57ddcd2408d6b44d71"></a>FRONT&#160;</td><td class="fielddoc"><p>Below first grid point. </p>
+</td></tr>
+<tr><td class="fieldname"><a id="a7002ebbef966f89b2426f5ea0df33329ad8c6323fcc54dfc5319fbd935ae4f75d" name="a7002ebbef966f89b2426f5ea0df33329ad8c6323fcc54dfc5319fbd935ae4f75d"></a>BACK&#160;</td><td class="fielddoc"><p>Above last grid point. </p>
+</td></tr>
+<tr><td class="fieldname"><a id="a7002ebbef966f89b2426f5ea0df33329abb276a700ba6a5b912fa0bf0a668d735" name="a7002ebbef966f89b2426f5ea0df33329abb276a700ba6a5b912fa0bf0a668d735"></a>MIDDLE&#160;</td><td class="fielddoc"><p>Between grid points. </p>
+</td></tr>
+</table>
+
+</div>
+</div>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="ae67464baee3b12cdc0470be74524866c" name="ae67464baee3b12cdc0470be74524866c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae67464baee3b12cdc0470be74524866c">&#9670;&#160;</a></span>RauscherThielemannPartitionFunction()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::partition::RauscherThielemannPartitionFunction::RauscherThielemannPartitionFunction </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Construct and populate partition data. </p>
+<p>Reads embedded RT partition data records and fills m_partitionData. </p><dl class="section pre"><dt>Precondition</dt><dd>Embedded data arrays are available and non-empty. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>m_partitionData contains entries for all isotopes in data. </dd></dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ad229cac0a84df5ebbcaf0550f83debf6" name="ad229cac0a84df5ebbcaf0550f83debf6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad229cac0a84df5ebbcaf0550f83debf6">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">PartitionFunction</a> &gt; gridfire::partition::RauscherThielemannPartitionFunction::clone </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Clone this partition function instance. </p>
+<dl class="section return"><dt>Returns</dt><dd>Unique pointer to a copy of this object. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>Caller owns the returned object. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a677a90f992fd56b8718e36655c33ce6d">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="aebe49d06b50a18ea4484ff15cb301681" name="aebe49d06b50a18ea4484ff15cb301681"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aebe49d06b50a18ea4484ff15cb301681">&#9670;&#160;</a></span>evaluate()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::partition::RauscherThielemannPartitionFunction::evaluate </td>
+          <td>(</td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>a</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate partition function for isotope at temperature. </p>
+<p>Retrieves boundary or interpolated normalized G-value and scales by (2J+1). </p><dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">z</td><td>Atomic number of the isotope (&gt;=1). </td></tr>
+    <tr><td class="paramname">a</td><td>Mass number of the isotope (&gt;=z). </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in units of 10^9 K. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Dimensionless partition function. </dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>supports(z,a) returns true. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>No side effects. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::out_of_range</td><td>If isotope key not found in m_partitionData. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a08ee79b7d8723b4e00ee1fc9cdfbe817">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="aaa1e11579b44a88c5f18943cc303c4b4" name="aaa1e11579b44a88c5f18943cc303c4b4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaa1e11579b44a88c5f18943cc303c4b4">&#9670;&#160;</a></span>evaluateDerivative()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::partition::RauscherThielemannPartitionFunction::evaluateDerivative </td>
+          <td>(</td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>a</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate temperature derivative of partition function. </p>
+<p>Zero at grid extremes; otherwise derivative of linear interpolation. </p><dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">z</td><td>Atomic number (&gt;=1). </td></tr>
+    <tr><td class="paramname">a</td><td>Mass number (&gt;=z). </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in 10^9 K. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>d(PartitionFunction)/dT9. </dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>supports(z,a) returns true. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>No side effects. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::out_of_range</td><td>If isotope data is missing. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a14009bdaca47f3eddf2c6c023845db5a">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="a12058e121981294f447e69a467fd84cd" name="a12058e121981294f447e69a467fd84cd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a12058e121981294f447e69a467fd84cd">&#9670;&#160;</a></span>find()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1IdentifiedIsotope.html">RauscherThielemannPartitionFunction::IdentifiedIsotope</a> gridfire::partition::RauscherThielemannPartitionFunction::find </td>
+          <td>(</td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>a</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Identify isotope entry and grid indices for given T9. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">z</td><td>Atomic number of isotope. </td></tr>
+    <tr><td class="paramname">a</td><td>Mass number of isotope. </td></tr>
+    <tr><td class="paramname">T9</td><td>Temperature in 10^9 K. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1IdentifiedIsotope.html">IdentifiedIsotope</a> with data reference and indices. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::out_of_range</td><td>If isotope not found in m_partitionData. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a3baed110ab1b12e22071dc2d92c55db9" name="a3baed110ab1b12e22071dc2d92c55db9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3baed110ab1b12e22071dc2d92c55db9">&#9670;&#160;</a></span>get_interpolation_points()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1InterpolationPoints.html">RauscherThielemannPartitionFunction::InterpolationPoints</a> gridfire::partition::RauscherThielemannPartitionFunction::get_interpolation_points </td>
+          <td>(</td>
+          <td class="paramtype">const size_t&#160;</td>
+          <td class="paramname"><em>upper_index</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const size_t&#160;</td>
+          <td class="paramname"><em>lower_index</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::array&lt; double, 24 &gt; &amp;&#160;</td>
+          <td class="paramname"><em>normalized_g_values</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get interpolation points from normalized G array. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">upper_index</td><td>Index of upper grid point. </td></tr>
+    <tr><td class="paramname">lower_index</td><td>Index of lower grid point. </td></tr>
+    <tr><td class="paramname">normalized_g_values</td><td>Array of normalized G values. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1InterpolationPoints.html">InterpolationPoints</a> containing bounds and G values. </dd></dl>
+
+</div>
+</div>
+<a id="ac58b95c8530f69f063c8ed8293487aec" name="ac58b95c8530f69f063c8ed8293487aec"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac58b95c8530f69f063c8ed8293487aec">&#9670;&#160;</a></span>make_key()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">constexpr int gridfire::partition::RauscherThielemannPartitionFunction::make_key </td>
+          <td>(</td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>a</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">constexpr</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generate integer key for isotope (z,a). </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">z</td><td>Atomic number. </td></tr>
+    <tr><td class="paramname">a</td><td>Mass number (&lt;1000). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Key computed as z*1000 + a. </dd></dl>
+
+</div>
+</div>
+<a id="a588a11c654751765b04d6425c99041f5" name="a588a11c654751765b04d6425c99041f5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a588a11c654751765b04d6425c99041f5">&#9670;&#160;</a></span>supports()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::partition::RauscherThielemannPartitionFunction::supports </td>
+          <td>(</td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>a</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Check if partition data exists for given isotope. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">z</td><td>Atomic number. </td></tr>
+    <tr><td class="paramname">a</td><td>Mass number. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if data available; false otherwise. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>No side effects. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a6df4191d10516477371a0384e1e55bf5">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<a id="a3aa478acf12e09b6dd268f744071b2a0" name="a3aa478acf12e09b6dd268f744071b2a0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3aa478acf12e09b6dd268f744071b2a0">&#9670;&#160;</a></span>type()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::partition::RauscherThielemannPartitionFunction::type </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get type identifier for this partition function. </p>
+<dl class="section return"><dt>Returns</dt><dd>Literal string "RauscherThielemann". </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>No side effects. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#ab0c67985a972707eac0ebc64417dfb97">gridfire::partition::PartitionFunction</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a57384ffb1c81cf982614d90e23b173b6" name="a57384ffb1c81cf982614d90e23b173b6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a57384ffb1c81cf982614d90e23b173b6">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::partition::RauscherThielemannPartitionFunction::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a50ce19df4c12e22bbcb61422248a4038" name="a50ce19df4c12e22bbcb61422248a4038"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a50ce19df4c12e22bbcb61422248a4038">&#9670;&#160;</a></span>m_partitionData</h2>
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+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;int, <a class="el" href="structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1IsotopeData.html">IsotopeData</a>&gt; gridfire::partition::RauscherThielemannPartitionFunction::m_partitionData</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Map of isotope key to data. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/partition/<a class="el" href="partition__rauscher__thielemann_8h.html">partition_rauscher_thielemann.h</a></li>
+<li>src/lib/partition/<a class="el" href="partition__rauscher__thielemann_8cpp.html">partition_rauscher_thielemann.cpp</a></li>
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+    [ "RauscherThielemannPartitionFunction", "classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#ae67464baee3b12cdc0470be74524866c", null ],
+    [ "clone", "classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#ad229cac0a84df5ebbcaf0550f83debf6", null ],
+    [ "evaluate", "classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#aebe49d06b50a18ea4484ff15cb301681", null ],
+    [ "evaluateDerivative", "classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#aaa1e11579b44a88c5f18943cc303c4b4", null ],
+    [ "find", "classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a12058e121981294f447e69a467fd84cd", null ],
+    [ "get_interpolation_points", "classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a3baed110ab1b12e22071dc2d92c55db9", null ],
+    [ "make_key", "classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#ac58b95c8530f69f063c8ed8293487aec", null ],
+    [ "supports", "classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a588a11c654751765b04d6425c99041f5", null ],
+    [ "type", "classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a3aa478acf12e09b6dd268f744071b2a0", null ],
+    [ "m_logger", "classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a57384ffb1c81cf982614d90e23b173b6", null ],
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+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1policy_1_1CNOChainPolicy.html">gridfire::policy::CNOChainPolicy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a2317c6351bb1fc07ff0a27cd358b4f73">begin</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a6b340b7bdb8cf9e32f004074b1901815">begin</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab3bbbf21164211a01c5398a0ee281bb2">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOChainPolicy.html#a5a526c6239c3a321c81484061a7a53e4">CNOChainPolicy</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOChainPolicy.html">gridfire::policy::CNOChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a792cf0af8e5c365d0332cd585968dae1">contains</a>(const std::string &amp;id) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a864a00097e80db7b0f3838d696aa9f5d">contains</a>(const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aaa71cb8b9c72af7047c4ae54b8c33915">end</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a8f2f648e161d1935c27729bcd6054187">end</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aeec13e231994234c1ae2b12a0dd7220b">get_chain_policies</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ae689a0dfeb36f85ddc6db5a8dc4f630a">get_reactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ae5ac6534ec96cfcdefcad2f9694efd36">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a8ef92bf3b66d77f8141bb6010e909e99">m_chain_policies</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#adaf3fa4b8cd0fde5994f54494701c32d">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab0e3ba293b5e52d595dfa02db4fcbee7">MultiReactionChainPolicy</a>(std::vector&lt; std::unique_ptr&lt; ReactionChainPolicy &gt; &gt; &amp;&amp;chain_policies)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOChainPolicy.html#a66511726b37f0e114cba2dd15db42440">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOChainPolicy.html">gridfire::policy::CNOChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aa36844fe4417617175d31124e541da50">operator!=</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#abc3ed7c255b3e6c06e292aee8ef7f46d">operator==</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a84fcdc2adab96284d850f8dd43315278">size</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1policy_1_1CNOChainPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::CNOChainPolicy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>CNO Chain Policy.  
+ <a href="classgridfire_1_1policy_1_1CNOChainPolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;chains.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::CNOChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1CNOChainPolicy__inherit__graph.svg" width="223" height="227"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::policy::CNOChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1CNOChainPolicy__coll__graph.svg" width="100%" height="570"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a5a526c6239c3a321c81484061a7a53e4" id="r_a5a526c6239c3a321c81484061a7a53e4"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1CNOChainPolicy.html#a5a526c6239c3a321c81484061a7a53e4">CNOChainPolicy</a> ()</td></tr>
+<tr class="separator:a5a526c6239c3a321c81484061a7a53e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a66511726b37f0e114cba2dd15db42440" id="r_a66511726b37f0e114cba2dd15db42440"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1CNOChainPolicy.html#a66511726b37f0e114cba2dd15db42440">name</a> () const override</td></tr>
+<tr class="separator:a66511726b37f0e114cba2dd15db42440"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td></tr>
+<tr class="memitem:ab0e3ba293b5e52d595dfa02db4fcbee7 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy" id="r_ab0e3ba293b5e52d595dfa02db4fcbee7"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab0e3ba293b5e52d595dfa02db4fcbee7">MultiReactionChainPolicy</a> (std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; &gt; &amp;&amp;chain_policies)</td></tr>
+<tr class="memdesc:ab0e3ba293b5e52d595dfa02db4fcbee7 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a> from a vector of <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances.  <br /></td></tr>
+<tr class="separator:ab0e3ba293b5e52d595dfa02db4fcbee7 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aeec13e231994234c1ae2b12a0dd7220b inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy" id="r_aeec13e231994234c1ae2b12a0dd7220b"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aeec13e231994234c1ae2b12a0dd7220b">get_chain_policies</a> () const</td></tr>
+<tr class="memdesc:aeec13e231994234c1ae2b12a0dd7220b inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the vector of child <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances.  <br /></td></tr>
+<tr class="separator:aeec13e231994234c1ae2b12a0dd7220b inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae689a0dfeb36f85ddc6db5a8dc4f630a inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy" id="r_ae689a0dfeb36f85ddc6db5a8dc4f630a"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ae689a0dfeb36f85ddc6db5a8dc4f630a">get_reactions</a> () const override</td></tr>
+<tr class="memdesc:ae689a0dfeb36f85ddc6db5a8dc4f630a inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the combined ReactionSet of all child chain policies.  <br /></td></tr>
+<tr class="separator:ae689a0dfeb36f85ddc6db5a8dc4f630a inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a792cf0af8e5c365d0332cd585968dae1 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy" id="r_a792cf0af8e5c365d0332cd585968dae1"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a792cf0af8e5c365d0332cd585968dae1">contains</a> (const std::string &amp;id) const override</td></tr>
+<tr class="memdesc:a792cf0af8e5c365d0332cd585968dae1 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a> contains a reaction by ID.  <br /></td></tr>
+<tr class="separator:a792cf0af8e5c365d0332cd585968dae1 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a864a00097e80db7b0f3838d696aa9f5d inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy" id="r_a864a00097e80db7b0f3838d696aa9f5d"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a864a00097e80db7b0f3838d696aa9f5d">contains</a> (const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;reaction) const override</td></tr>
+<tr class="memdesc:a864a00097e80db7b0f3838d696aa9f5d inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a> contains a specific reaction.  <br /></td></tr>
+<tr class="separator:a864a00097e80db7b0f3838d696aa9f5d inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab3bbbf21164211a01c5398a0ee281bb2 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy" id="r_ab3bbbf21164211a01c5398a0ee281bb2"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab3bbbf21164211a01c5398a0ee281bb2">clone</a> () const override</td></tr>
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+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>CNO Chain Policy. </p>
+<p>This class implements the overall CNO cycle of nuclear reactions, combining the CNO I, II, III, and IV chains. Enforcing this chain in the policy will ensure that all the CNO reactions are included in the network.</p>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="classgridfire_1_1policy_1_1CNOIChainPolicy.html" title="CNO I Chain Policy.">CNOIChainPolicy</a> </dd>
+<dd>
+<a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html" title="CNO II Chain Policy.">CNOIIChainPolicy</a> </dd>
+<dd>
+<a class="el" href="classgridfire_1_1policy_1_1CNOIIIChainPolicy.html" title="CNO III Chain Policy.">CNOIIIChainPolicy</a> </dd>
+<dd>
+<a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html" title="CNO IV Chain Policy.">CNOIVChainPolicy</a> </dd></dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
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+<h2 class="memtitle"><span class="permalink"><a href="#a5a526c6239c3a321c81484061a7a53e4">&#9670;&#160;</a></span>CNOChainPolicy()</h2>
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+          <td class="memname">gridfire::policy::CNOChainPolicy::CNOChainPolicy </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a66511726b37f0e114cba2dd15db42440" name="a66511726b37f0e114cba2dd15db42440"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a66511726b37f0e114cba2dd15db42440">&#9670;&#160;</a></span>name()</h2>
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+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::policy::CNOChainPolicy::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
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+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a41758d921a2d7e83f446aa4fec00d598">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/policy/<a class="el" href="chains_8h.html">chains.h</a></li>
+<li>src/lib/policy/<a class="el" href="chains_8cpp.html">chains.cpp</a></li>
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diff --git a/docs/html/classgridfire_1_1policy_1_1CNOIChainPolicy-members.html b/docs/html/classgridfire_1_1policy_1_1CNOIChainPolicy-members.html
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+<script type="text/javascript" src="search/search.js"></script>
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+<div id="titlearea">
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::policy::CNOIChainPolicy Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1policy_1_1CNOIChainPolicy.html">gridfire::policy::CNOIChainPolicy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIChainPolicy.html#a83042f4626ec22810314fa5181d3392a">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIChainPolicy.html">gridfire::policy::CNOIChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIChainPolicy.html#a7b428233b7cd85bac48c0b4906f990ce">CNOIChainPolicy</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIChainPolicy.html">gridfire::policy::CNOIChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8869287d36b3ff143e7f84799ef35dd9">contains</a>(const std::string &amp;id) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8984d58dee6865d4bd98aedf31bb445e">contains</a>(const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ae93a5a2d753ddd32f2a4a5a750ef44b4">get_reactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a0b2c469f8e17ccba0f45632b19395731">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a2e10b0f832b1addbaa90c14363732c7a">is_active</a>(double T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a69882ddefb0f27b13433616411a1484a">m_reactionIDs</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ad9cd9e4826f60e066feda2ffc5d37338">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a22d731c0a0bf804f7c8b0e22cf13b688">m_tempRange</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIChainPolicy.html#ad3d4721e3046d792c0aa8e5c6c99aa2d">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIChainPolicy.html">gridfire::policy::CNOIChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950">operator!=</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">operator==</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a07f5a057d382874ec641b3494338dc65">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ab7f64e19d0ce405aba55b518ed301b92">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a4886c44a082151ebf7b75594dbc6856b">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9, std::optional&lt; double &gt; maxT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a74b59b1cb02703834373fb7a3d09614e">~TemperatureDependentChainPolicy</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/classgridfire_1_1policy_1_1CNOIChainPolicy.html b/docs/html/classgridfire_1_1policy_1_1CNOIChainPolicy.html
new file mode 100644
index 00000000..3cf2416a
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1policy_1_1CNOIChainPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::CNOIChainPolicy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>CNO I Chain Policy.  
+ <a href="classgridfire_1_1policy_1_1CNOIChainPolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;chains.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::CNOIChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1CNOIChainPolicy__inherit__graph.svg" width="215" height="227"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::policy::CNOIChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1CNOIChainPolicy__coll__graph.svg" width="100%" height="524"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a7b428233b7cd85bac48c0b4906f990ce" id="r_a7b428233b7cd85bac48c0b4906f990ce"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1CNOIChainPolicy.html#a7b428233b7cd85bac48c0b4906f990ce">CNOIChainPolicy</a> ()</td></tr>
+<tr class="separator:a7b428233b7cd85bac48c0b4906f990ce"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a83042f4626ec22810314fa5181d3392a" id="r_a83042f4626ec22810314fa5181d3392a"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1CNOIChainPolicy.html#a83042f4626ec22810314fa5181d3392a">clone</a> () const override</td></tr>
+<tr class="separator:a83042f4626ec22810314fa5181d3392a"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:ad3d4721e3046d792c0aa8e5c6c99aa2d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td></tr>
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+<tr class="memitem:add9c0230ad7c3e6e2cb182bdb4849c52 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_add9c0230ad7c3e6e2cb182bdb4849c52"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">operator==</a> (const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;other) const override</td></tr>
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+<tr class="memitem:a264dc45c3410ab3ec49a340633aa5950 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a264dc45c3410ab3ec49a340633aa5950"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950">operator!=</a> (const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;other) const override</td></tr>
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+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td></tr>
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+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>CNO I Chain Policy. </p>
+<p>This class implements the CNO I cycle of nuclear reactions. This chain's minimum temperature is set to T9=0.001 (or 1e6K). This chain includes reactions:</p><ul>
+<li>c12(p,g)n13</li>
+<li>n13(,e+)c13</li>
+<li>c13(p,g)n14</li>
+<li>n14(p,g)o15</li>
+<li>o15(,e+)n15</li>
+<li>n15(p,a)c12 </li>
+</ul>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
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+<h2 class="memtitle"><span class="permalink"><a href="#a7b428233b7cd85bac48c0b4906f990ce">&#9670;&#160;</a></span>CNOIChainPolicy()</h2>
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+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::policy::CNOIChainPolicy::CNOIChainPolicy </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a83042f4626ec22810314fa5181d3392a" name="a83042f4626ec22810314fa5181d3392a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a83042f4626ec22810314fa5181d3392a">&#9670;&#160;</a></span>clone()</h2>
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+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; gridfire::policy::CNOIChainPolicy::clone </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
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+<h2 class="memtitle"><span class="permalink"><a href="#ad3d4721e3046d792c0aa8e5c6c99aa2d">&#9670;&#160;</a></span>name()</h2>
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+          <td class="memname">std::string gridfire::policy::CNOIChainPolicy::name </td>
+          <td>(</td>
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+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<!-- Generated by Doxygen 1.9.8 -->
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+  <div class="headertitle"><div class="title">gridfire::policy::CNOIIChainPolicy Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html">gridfire::policy::CNOIIChainPolicy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html#ab3aa5daaf2d9274770f981d8f67ae20b">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html">gridfire::policy::CNOIIChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html#aebcb36cb5cfbde4cf0e5b785c4b8cbd8">CNOIIChainPolicy</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html">gridfire::policy::CNOIIChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8869287d36b3ff143e7f84799ef35dd9">contains</a>(const std::string &amp;id) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8984d58dee6865d4bd98aedf31bb445e">contains</a>(const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ae93a5a2d753ddd32f2a4a5a750ef44b4">get_reactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a0b2c469f8e17ccba0f45632b19395731">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a2e10b0f832b1addbaa90c14363732c7a">is_active</a>(double T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a69882ddefb0f27b13433616411a1484a">m_reactionIDs</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ad9cd9e4826f60e066feda2ffc5d37338">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a22d731c0a0bf804f7c8b0e22cf13b688">m_tempRange</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html#a6bf1057d28cb37db4f9ffde9cb3815ed">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html">gridfire::policy::CNOIIChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950">operator!=</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">operator==</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a07f5a057d382874ec641b3494338dc65">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ab7f64e19d0ce405aba55b518ed301b92">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a4886c44a082151ebf7b75594dbc6856b">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9, std::optional&lt; double &gt; maxT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a74b59b1cb02703834373fb7a3d09614e">~TemperatureDependentChainPolicy</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
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+<!-- end header part -->
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1policy_1_1CNOIIChainPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::CNOIIChainPolicy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>CNO II Chain Policy.  
+ <a href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;chains.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::CNOIIChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1CNOIIChainPolicy__inherit__graph.svg" width="215" height="227"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::policy::CNOIIChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1CNOIIChainPolicy__coll__graph.svg" width="100%" height="524"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:aebcb36cb5cfbde4cf0e5b785c4b8cbd8" id="r_aebcb36cb5cfbde4cf0e5b785c4b8cbd8"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html#aebcb36cb5cfbde4cf0e5b785c4b8cbd8">CNOIIChainPolicy</a> ()</td></tr>
+<tr class="separator:aebcb36cb5cfbde4cf0e5b785c4b8cbd8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab3aa5daaf2d9274770f981d8f67ae20b" id="r_ab3aa5daaf2d9274770f981d8f67ae20b"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html#ab3aa5daaf2d9274770f981d8f67ae20b">clone</a> () const override</td></tr>
+<tr class="separator:ab3aa5daaf2d9274770f981d8f67ae20b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6bf1057d28cb37db4f9ffde9cb3815ed" id="r_a6bf1057d28cb37db4f9ffde9cb3815ed"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html#a6bf1057d28cb37db4f9ffde9cb3815ed">name</a> () const override</td></tr>
+<tr class="separator:a6bf1057d28cb37db4f9ffde9cb3815ed"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td></tr>
+<tr class="memitem:a07f5a057d382874ec641b3494338dc65 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a07f5a057d382874ec641b3494338dc65"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a07f5a057d382874ec641b3494338dc65">TemperatureDependentChainPolicy</a> (const std::vector&lt; std::string &gt; &amp;reactionIDs)</td></tr>
+<tr class="memdesc:a07f5a057d382874ec641b3494338dc65 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a new Temperature Dependent Chain Policy object.  <br /></td></tr>
+<tr class="separator:a07f5a057d382874ec641b3494338dc65 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab7f64e19d0ce405aba55b518ed301b92 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_ab7f64e19d0ce405aba55b518ed301b92"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ab7f64e19d0ce405aba55b518ed301b92">TemperatureDependentChainPolicy</a> (const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9)</td></tr>
+<tr class="memdesc:ab7f64e19d0ce405aba55b518ed301b92 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a new Temperature Dependent Chain Policy object.  <br /></td></tr>
+<tr class="separator:ab7f64e19d0ce405aba55b518ed301b92 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4886c44a082151ebf7b75594dbc6856b inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a4886c44a082151ebf7b75594dbc6856b"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a4886c44a082151ebf7b75594dbc6856b">TemperatureDependentChainPolicy</a> (const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9, std::optional&lt; double &gt; maxT9)</td></tr>
+<tr class="memdesc:a4886c44a082151ebf7b75594dbc6856b inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a new Temperature Dependent Chain Policy object.  <br /></td></tr>
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+Additional Inherited Members</h2></td></tr>
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+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>CNO II Chain Policy. </p>
+<p>This class implements the CNO II cycle of nuclear reactions. This chain's minimum temperature is set to T9=0.001 (or 1e6K). This chain includes reactions:</p><ul>
+<li>n15(p,g)o16</li>
+<li>o16(p,g)f17</li>
+<li>f17(p,g)ne18</li>
+<li>ne18(,e+)f18</li>
+<li>f18(p,a)o15</li>
+<li>o15(,e+)n15 </li>
+</ul>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="aebcb36cb5cfbde4cf0e5b785c4b8cbd8" name="aebcb36cb5cfbde4cf0e5b785c4b8cbd8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aebcb36cb5cfbde4cf0e5b785c4b8cbd8">&#9670;&#160;</a></span>CNOIIChainPolicy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::policy::CNOIIChainPolicy::CNOIIChainPolicy </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ab3aa5daaf2d9274770f981d8f67ae20b" name="ab3aa5daaf2d9274770f981d8f67ae20b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab3aa5daaf2d9274770f981d8f67ae20b">&#9670;&#160;</a></span>clone()</h2>
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+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; gridfire::policy::CNOIIChainPolicy::clone </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac24ff49b7715ad3eefea4bed1bf23686">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a6bf1057d28cb37db4f9ffde9cb3815ed" name="a6bf1057d28cb37db4f9ffde9cb3815ed"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6bf1057d28cb37db4f9ffde9cb3815ed">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::policy::CNOIIChainPolicy::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
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+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a41758d921a2d7e83f446aa4fec00d598">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/policy/<a class="el" href="chains_8h.html">chains.h</a></li>
+<li>src/lib/policy/<a class="el" href="chains_8cpp.html">chains.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
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+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1policy.html">policy</a></li><li class="navelem"><a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html">CNOIIChainPolicy</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
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diff --git a/docs/html/classgridfire_1_1policy_1_1CNOIIIChainPolicy-members.html b/docs/html/classgridfire_1_1policy_1_1CNOIIIChainPolicy-members.html
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <div class="headertitle"><div class="title">gridfire::policy::CNOIIIChainPolicy Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1policy_1_1CNOIIIChainPolicy.html">gridfire::policy::CNOIIIChainPolicy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIIIChainPolicy.html#a9c0e056615742b3d77f47b3eb676ff28">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIIIChainPolicy.html">gridfire::policy::CNOIIIChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIIIChainPolicy.html#af5ba73b9349e97fd1e2876ce9e9fac0b">CNOIIIChainPolicy</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIIIChainPolicy.html">gridfire::policy::CNOIIIChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8869287d36b3ff143e7f84799ef35dd9">contains</a>(const std::string &amp;id) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8984d58dee6865d4bd98aedf31bb445e">contains</a>(const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ae93a5a2d753ddd32f2a4a5a750ef44b4">get_reactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a0b2c469f8e17ccba0f45632b19395731">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a2e10b0f832b1addbaa90c14363732c7a">is_active</a>(double T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a69882ddefb0f27b13433616411a1484a">m_reactionIDs</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ad9cd9e4826f60e066feda2ffc5d37338">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a22d731c0a0bf804f7c8b0e22cf13b688">m_tempRange</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIIIChainPolicy.html#a96abfb16ec2b692c070da139444435e3">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIIIChainPolicy.html">gridfire::policy::CNOIIIChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950">operator!=</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">operator==</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a07f5a057d382874ec641b3494338dc65">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ab7f64e19d0ce405aba55b518ed301b92">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a4886c44a082151ebf7b75594dbc6856b">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9, std::optional&lt; double &gt; maxT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a74b59b1cb02703834373fb7a3d09614e">~TemperatureDependentChainPolicy</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1policy_1_1CNOIIIChainPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::CNOIIIChainPolicy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>CNO III Chain Policy.  
+ <a href="classgridfire_1_1policy_1_1CNOIIIChainPolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;chains.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::CNOIIIChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1CNOIIIChainPolicy__inherit__graph.svg" width="215" height="227"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::policy::CNOIIIChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1CNOIIIChainPolicy__coll__graph.svg" width="100%" height="524"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
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+<tr class="separator:af5ba73b9349e97fd1e2876ce9e9fac0b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a96abfb16ec2b692c070da139444435e3"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memitem:aa3e6c1e4844fe788aeb08d272070ae13 inherit pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy" id="r_aa3e6c1e4844fe788aeb08d272070ae13"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a> ()=default</td></tr>
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+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td></tr>
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+<tr class="memdesc:a22d731c0a0bf804f7c8b0e22cf13b688 inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Active temperature range for the reaction chain.  <br /></td></tr>
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+<tr class="memdesc:ad9cd9e4826f60e066feda2ffc5d37338 inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of reactions that comprise the chain.  <br /></td></tr>
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+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>CNO III Chain Policy. </p>
+<p>This class implements the CNO III cycle of nuclear reactions. This chain's minimum temperature is set to T9=0.001 (or 1e6K). This chain includes reactions:</p><ul>
+<li>o17(p,g)f18</li>
+<li>f18(,e+)o18</li>
+<li>o18(p,a)n15</li>
+<li>n15(p,g)o16</li>
+<li>o16(p,g)f17</li>
+<li>f17(,e+)o17 </li>
+</ul>
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+<h2 class="memtitle"><span class="permalink"><a href="#af5ba73b9349e97fd1e2876ce9e9fac0b">&#9670;&#160;</a></span>CNOIIIChainPolicy()</h2>
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+<div class="memitem">
+<div class="memproto">
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+          <td class="memname">gridfire::policy::CNOIIIChainPolicy::CNOIIIChainPolicy </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
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+</div><div class="memdoc">
+
+</div>
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+<h2 class="groupheader">Member Function Documentation</h2>
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+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
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+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
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+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.9.8 -->
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+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
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+  <div class="headertitle"><div class="title">gridfire::policy::CNOIVChainPolicy Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html">gridfire::policy::CNOIVChainPolicy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html#a35bef8035035eb85bb188ede6045556c">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html">gridfire::policy::CNOIVChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html#a3a73e280dca833ff6517bef9b9193aa1">CNOIVChainPolicy</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html">gridfire::policy::CNOIVChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8869287d36b3ff143e7f84799ef35dd9">contains</a>(const std::string &amp;id) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8984d58dee6865d4bd98aedf31bb445e">contains</a>(const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ae93a5a2d753ddd32f2a4a5a750ef44b4">get_reactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a0b2c469f8e17ccba0f45632b19395731">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a2e10b0f832b1addbaa90c14363732c7a">is_active</a>(double T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a69882ddefb0f27b13433616411a1484a">m_reactionIDs</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ad9cd9e4826f60e066feda2ffc5d37338">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a22d731c0a0bf804f7c8b0e22cf13b688">m_tempRange</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html#a101a884a8ead5d961fd5d43a0dbffde8">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html">gridfire::policy::CNOIVChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950">operator!=</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">operator==</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a07f5a057d382874ec641b3494338dc65">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ab7f64e19d0ce405aba55b518ed301b92">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a4886c44a082151ebf7b75594dbc6856b">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9, std::optional&lt; double &gt; maxT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a74b59b1cb02703834373fb7a3d09614e">~TemperatureDependentChainPolicy</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
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diff --git a/docs/html/classgridfire_1_1policy_1_1CNOIVChainPolicy.html b/docs/html/classgridfire_1_1policy_1_1CNOIVChainPolicy.html
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@@ -0,0 +1,273 @@
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+<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
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+<meta name="generator" content="Doxygen 1.9.8"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::policy::CNOIVChainPolicy Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
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+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.9.8 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1policy_1_1CNOIVChainPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::CNOIVChainPolicy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>CNO IV Chain Policy.  
+ <a href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;chains.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::CNOIVChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1CNOIVChainPolicy__inherit__graph.svg" width="215" height="227"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::policy::CNOIVChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1CNOIVChainPolicy__coll__graph.svg" width="100%" height="524"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a3a73e280dca833ff6517bef9b9193aa1" id="r_a3a73e280dca833ff6517bef9b9193aa1"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html#a3a73e280dca833ff6517bef9b9193aa1">CNOIVChainPolicy</a> ()</td></tr>
+<tr class="separator:a3a73e280dca833ff6517bef9b9193aa1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a35bef8035035eb85bb188ede6045556c" id="r_a35bef8035035eb85bb188ede6045556c"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html#a35bef8035035eb85bb188ede6045556c">clone</a> () const override</td></tr>
+<tr class="separator:a35bef8035035eb85bb188ede6045556c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a101a884a8ead5d961fd5d43a0dbffde8" id="r_a101a884a8ead5d961fd5d43a0dbffde8"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html#a101a884a8ead5d961fd5d43a0dbffde8">name</a> () const override</td></tr>
+<tr class="separator:a101a884a8ead5d961fd5d43a0dbffde8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td></tr>
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+<tr class="memdesc:a8984d58dee6865d4bd98aedf31bb445e inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if a reaction is part of the chain.  <br /></td></tr>
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+<tr class="memitem:add9c0230ad7c3e6e2cb182bdb4849c52 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_add9c0230ad7c3e6e2cb182bdb4849c52"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">operator==</a> (const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;other) const override</td></tr>
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+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td></tr>
+<tr class="memitem:aa3e6c1e4844fe788aeb08d272070ae13 inherit pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy" id="r_aa3e6c1e4844fe788aeb08d272070ae13"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a> ()=default</td></tr>
+<tr class="separator:aa3e6c1e4844fe788aeb08d272070ae13 inherit pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td></tr>
+<tr class="memitem:a22d731c0a0bf804f7c8b0e22cf13b688 inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a22d731c0a0bf804f7c8b0e22cf13b688"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1policy_1_1TemperatureDependentChainPolicy_1_1ActiveTempRange.html">ActiveTempRange</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a22d731c0a0bf804f7c8b0e22cf13b688">m_tempRange</a></td></tr>
+<tr class="memdesc:a22d731c0a0bf804f7c8b0e22cf13b688 inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Active temperature range for the reaction chain.  <br /></td></tr>
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+<tr class="memitem:a69882ddefb0f27b13433616411a1484a inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a69882ddefb0f27b13433616411a1484a"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::string &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a69882ddefb0f27b13433616411a1484a">m_reactionIDs</a></td></tr>
+<tr class="memdesc:a69882ddefb0f27b13433616411a1484a inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Vector of reaction IDs that comprise the chain.  <br /></td></tr>
+<tr class="separator:a69882ddefb0f27b13433616411a1484a inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad9cd9e4826f60e066feda2ffc5d37338 inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_ad9cd9e4826f60e066feda2ffc5d37338"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ad9cd9e4826f60e066feda2ffc5d37338">m_reactions</a></td></tr>
+<tr class="memdesc:ad9cd9e4826f60e066feda2ffc5d37338 inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of reactions that comprise the chain.  <br /></td></tr>
+<tr class="separator:ad9cd9e4826f60e066feda2ffc5d37338 inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>CNO IV Chain Policy. </p>
+<p>This class implements the CNO IV cycle of nuclear reactions. This chain's minimum temperature is set to T9=0.001 (or 1e6K). This chain includes reactions:</p><ul>
+<li>o18(p,g)f19</li>
+<li>f19(p,a)o16</li>
+<li>o16(p,g)f17</li>
+<li>f17(,e+)o17</li>
+<li>o17(p,g)f18</li>
+<li>f18(,e+)o18 </li>
+</ul>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a3a73e280dca833ff6517bef9b9193aa1" name="a3a73e280dca833ff6517bef9b9193aa1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3a73e280dca833ff6517bef9b9193aa1">&#9670;&#160;</a></span>CNOIVChainPolicy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::policy::CNOIVChainPolicy::CNOIVChainPolicy </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a35bef8035035eb85bb188ede6045556c" name="a35bef8035035eb85bb188ede6045556c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a35bef8035035eb85bb188ede6045556c">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
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+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; gridfire::policy::CNOIVChainPolicy::clone </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac24ff49b7715ad3eefea4bed1bf23686">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a101a884a8ead5d961fd5d43a0dbffde8" name="a101a884a8ead5d961fd5d43a0dbffde8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a101a884a8ead5d961fd5d43a0dbffde8">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::policy::CNOIVChainPolicy::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a41758d921a2d7e83f446aa4fec00d598">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/policy/<a class="el" href="chains_8h.html">chains.h</a></li>
+<li>src/lib/policy/<a class="el" href="chains_8cpp.html">chains.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1policy.html">policy</a></li><li class="navelem"><a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html">CNOIVChainPolicy</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
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+[
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+    [ "clone", "classgridfire_1_1policy_1_1CNOIVChainPolicy.html#a35bef8035035eb85bb188ede6045556c", null ],
+    [ "name", "classgridfire_1_1policy_1_1CNOIVChainPolicy.html#a101a884a8ead5d961fd5d43a0dbffde8", null ]
+];
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diff --git a/docs/html/classgridfire_1_1policy_1_1HotCNOChainPolicy-members.html b/docs/html/classgridfire_1_1policy_1_1HotCNOChainPolicy-members.html
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+  <div class="headertitle"><div class="title">gridfire::policy::HotCNOChainPolicy Member List</div></div>
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+<div class="contents">
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+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1policy_1_1HotCNOChainPolicy.html">gridfire::policy::HotCNOChainPolicy</a>, including all inherited members.</p>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a2317c6351bb1fc07ff0a27cd358b4f73">begin</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a6b340b7bdb8cf9e32f004074b1901815">begin</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab3bbbf21164211a01c5398a0ee281bb2">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a792cf0af8e5c365d0332cd585968dae1">contains</a>(const std::string &amp;id) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a864a00097e80db7b0f3838d696aa9f5d">contains</a>(const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aaa71cb8b9c72af7047c4ae54b8c33915">end</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a8f2f648e161d1935c27729bcd6054187">end</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aeec13e231994234c1ae2b12a0dd7220b">get_chain_policies</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ae689a0dfeb36f85ddc6db5a8dc4f630a">get_reactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ae5ac6534ec96cfcdefcad2f9694efd36">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOChainPolicy.html#ad46d00a57325130798948616acf4c920">HotCNOChainPolicy</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOChainPolicy.html">gridfire::policy::HotCNOChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a8ef92bf3b66d77f8141bb6010e909e99">m_chain_policies</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#adaf3fa4b8cd0fde5994f54494701c32d">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab0e3ba293b5e52d595dfa02db4fcbee7">MultiReactionChainPolicy</a>(std::vector&lt; std::unique_ptr&lt; ReactionChainPolicy &gt; &gt; &amp;&amp;chain_policies)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOChainPolicy.html#a95e2f3c1a32b3f2dd5d5601c2a81f42f">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOChainPolicy.html">gridfire::policy::HotCNOChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aa36844fe4417617175d31124e541da50">operator!=</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#abc3ed7c255b3e6c06e292aee8ef7f46d">operator==</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a84fcdc2adab96284d850f8dd43315278">size</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
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+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1policy_1_1HotCNOChainPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::HotCNOChainPolicy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Hot CNO Chain Policy.  
+ <a href="classgridfire_1_1policy_1_1HotCNOChainPolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;chains.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::HotCNOChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1HotCNOChainPolicy__inherit__graph.svg" width="223" height="227"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::policy::HotCNOChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1HotCNOChainPolicy__coll__graph.svg" width="100%" height="570"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:ad46d00a57325130798948616acf4c920" id="r_ad46d00a57325130798948616acf4c920"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1HotCNOChainPolicy.html#ad46d00a57325130798948616acf4c920">HotCNOChainPolicy</a> ()</td></tr>
+<tr class="separator:ad46d00a57325130798948616acf4c920"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a95e2f3c1a32b3f2dd5d5601c2a81f42f" id="r_a95e2f3c1a32b3f2dd5d5601c2a81f42f"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1HotCNOChainPolicy.html#a95e2f3c1a32b3f2dd5d5601c2a81f42f">name</a> () const override</td></tr>
+<tr class="separator:a95e2f3c1a32b3f2dd5d5601c2a81f42f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td></tr>
+<tr class="memitem:ab0e3ba293b5e52d595dfa02db4fcbee7 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy" id="r_ab0e3ba293b5e52d595dfa02db4fcbee7"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab0e3ba293b5e52d595dfa02db4fcbee7">MultiReactionChainPolicy</a> (std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; &gt; &amp;&amp;chain_policies)</td></tr>
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+<tr class="separator:ab0e3ba293b5e52d595dfa02db4fcbee7 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aeec13e231994234c1ae2b12a0dd7220b inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy" id="r_aeec13e231994234c1ae2b12a0dd7220b"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aeec13e231994234c1ae2b12a0dd7220b">get_chain_policies</a> () const</td></tr>
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+<tr class="separator:aeec13e231994234c1ae2b12a0dd7220b inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a792cf0af8e5c365d0332cd585968dae1 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a864a00097e80db7b0f3838d696aa9f5d inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a> contains a specific reaction.  <br /></td></tr>
+<tr class="separator:a864a00097e80db7b0f3838d696aa9f5d inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab3bbbf21164211a01c5398a0ee281bb2 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy" id="r_ab3bbbf21164211a01c5398a0ee281bb2"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab3bbbf21164211a01c5398a0ee281bb2">clone</a> () const override</td></tr>
+<tr class="memdesc:ab3bbbf21164211a01c5398a0ee281bb2 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Creates a deep copy of the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a>.  <br /></td></tr>
+<tr class="separator:ab3bbbf21164211a01c5398a0ee281bb2 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac21f837d0d452d32588451f48d5482e6 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy" id="r_ac21f837d0d452d32588451f48d5482e6"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ac21f837d0d452d32588451f48d5482e6">name</a> () const override</td></tr>
+<tr class="memdesc:ac21f837d0d452d32588451f48d5482e6 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the name of the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a>.  <br /></td></tr>
+<tr class="separator:ac21f837d0d452d32588451f48d5482e6 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae5ac6534ec96cfcdefcad2f9694efd36 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy" id="r_ae5ac6534ec96cfcdefcad2f9694efd36"><td class="memItemLeft" align="right" valign="top">uint64_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ae5ac6534ec96cfcdefcad2f9694efd36">hash</a> (uint64_t seed) const override</td></tr>
+<tr class="memdesc:ae5ac6534ec96cfcdefcad2f9694efd36 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes a hash value for the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a>.  <br /></td></tr>
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+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Hot CNO Chain Policy. </p>
+<p>This class implements the overall Hot CNO cycle of nuclear reactions, combining the Hot CNO I, II, and III chains. Enforcing this chain in the policy will ensure that all the Hot CNO reactions are included in the network.</p>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html" title="Hot CNO I Chain Policy.">HotCNOIChainPolicy</a> </dd>
+<dd>
+<a class="el" href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html" title="Hot CNO II Chain Policy.">HotCNOIIChainPolicy</a> </dd>
+<dd>
+<a class="el" href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html" title="Hot CNO III Chain Policy.">HotCNOIIIChainPolicy</a> </dd></dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
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+<h2 class="memtitle"><span class="permalink"><a href="#ad46d00a57325130798948616acf4c920">&#9670;&#160;</a></span>HotCNOChainPolicy()</h2>
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+ <tbody>
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::policy::HotCNOIChainPolicy Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html">gridfire::policy::HotCNOIChainPolicy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html#ae70a448fdeee35e159784fd6a506dce7">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html">gridfire::policy::HotCNOIChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8869287d36b3ff143e7f84799ef35dd9">contains</a>(const std::string &amp;id) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8984d58dee6865d4bd98aedf31bb445e">contains</a>(const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ae93a5a2d753ddd32f2a4a5a750ef44b4">get_reactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a0b2c469f8e17ccba0f45632b19395731">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html#a1816056fac2742369cc475bad4533dd6">HotCNOIChainPolicy</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html">gridfire::policy::HotCNOIChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a2e10b0f832b1addbaa90c14363732c7a">is_active</a>(double T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a69882ddefb0f27b13433616411a1484a">m_reactionIDs</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ad9cd9e4826f60e066feda2ffc5d37338">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a22d731c0a0bf804f7c8b0e22cf13b688">m_tempRange</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html#a13b2857d96e42f162888dcc294a27b9b">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html">gridfire::policy::HotCNOIChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950">operator!=</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">operator==</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a07f5a057d382874ec641b3494338dc65">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ab7f64e19d0ce405aba55b518ed301b92">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a4886c44a082151ebf7b75594dbc6856b">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9, std::optional&lt; double &gt; maxT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a74b59b1cb02703834373fb7a3d09614e">~TemperatureDependentChainPolicy</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/classgridfire_1_1policy_1_1HotCNOIChainPolicy.html b/docs/html/classgridfire_1_1policy_1_1HotCNOIChainPolicy.html
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+<div id="titlearea">
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1policy_1_1HotCNOIChainPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::HotCNOIChainPolicy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Hot CNO I Chain Policy.  
+ <a href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;chains.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::HotCNOIChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1HotCNOIChainPolicy__inherit__graph.svg" width="226" height="227"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::policy::HotCNOIChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1HotCNOIChainPolicy__coll__graph.svg" width="100%" height="524"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a1816056fac2742369cc475bad4533dd6" id="r_a1816056fac2742369cc475bad4533dd6"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html#a1816056fac2742369cc475bad4533dd6">HotCNOIChainPolicy</a> ()</td></tr>
+<tr class="separator:a1816056fac2742369cc475bad4533dd6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae70a448fdeee35e159784fd6a506dce7" id="r_ae70a448fdeee35e159784fd6a506dce7"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html#ae70a448fdeee35e159784fd6a506dce7">clone</a> () const override</td></tr>
+<tr class="separator:ae70a448fdeee35e159784fd6a506dce7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a13b2857d96e42f162888dcc294a27b9b" id="r_a13b2857d96e42f162888dcc294a27b9b"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html#a13b2857d96e42f162888dcc294a27b9b">name</a> () const override</td></tr>
+<tr class="separator:a13b2857d96e42f162888dcc294a27b9b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td></tr>
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+<tr class="memdesc:a07f5a057d382874ec641b3494338dc65 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a new Temperature Dependent Chain Policy object.  <br /></td></tr>
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+<tr class="memitem:a8869287d36b3ff143e7f84799ef35dd9 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a8869287d36b3ff143e7f84799ef35dd9"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8869287d36b3ff143e7f84799ef35dd9">contains</a> (const std::string &amp;id) const override</td></tr>
+<tr class="memdesc:a8869287d36b3ff143e7f84799ef35dd9 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if a reaction or reaction ID is part of the chain.  <br /></td></tr>
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+<tr class="memitem:add9c0230ad7c3e6e2cb182bdb4849c52 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_add9c0230ad7c3e6e2cb182bdb4849c52"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">operator==</a> (const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;other) const override</td></tr>
+<tr class="memdesc:add9c0230ad7c3e6e2cb182bdb4849c52 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Equality operator.  <br /></td></tr>
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+<tr class="memitem:a264dc45c3410ab3ec49a340633aa5950 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a264dc45c3410ab3ec49a340633aa5950"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950">operator!=</a> (const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;other) const override</td></tr>
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+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td></tr>
+<tr class="memitem:aa3e6c1e4844fe788aeb08d272070ae13 inherit pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy" id="r_aa3e6c1e4844fe788aeb08d272070ae13"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a> ()=default</td></tr>
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+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td></tr>
+<tr class="memitem:a22d731c0a0bf804f7c8b0e22cf13b688 inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a22d731c0a0bf804f7c8b0e22cf13b688"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1policy_1_1TemperatureDependentChainPolicy_1_1ActiveTempRange.html">ActiveTempRange</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a22d731c0a0bf804f7c8b0e22cf13b688">m_tempRange</a></td></tr>
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+<tr class="separator:a69882ddefb0f27b13433616411a1484a inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:ad9cd9e4826f60e066feda2ffc5d37338 inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of reactions that comprise the chain.  <br /></td></tr>
+<tr class="separator:ad9cd9e4826f60e066feda2ffc5d37338 inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Hot CNO I Chain Policy. </p>
+<p>This class implements the Hot CNO I cycle of nuclear reactions. This chain's minimum temperature is set to T9=0.1 (or 1e8K). This chain includes reactions:</p><ul>
+<li>c12(p,g)n13</li>
+<li>n13(p,g)o14</li>
+<li>o14(,e+)n14</li>
+<li>n14(p,g)o15</li>
+<li>o15(,e+)n15</li>
+<li>n15(p,a)c12 </li>
+</ul>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a1816056fac2742369cc475bad4533dd6" name="a1816056fac2742369cc475bad4533dd6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1816056fac2742369cc475bad4533dd6">&#9670;&#160;</a></span>HotCNOIChainPolicy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::policy::HotCNOIChainPolicy::HotCNOIChainPolicy </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ae70a448fdeee35e159784fd6a506dce7" name="ae70a448fdeee35e159784fd6a506dce7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae70a448fdeee35e159784fd6a506dce7">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; gridfire::policy::HotCNOIChainPolicy::clone </td>
+          <td>(</td>
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+          <td> const</td>
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+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac24ff49b7715ad3eefea4bed1bf23686">gridfire::policy::ReactionChainPolicy</a>.</p>
+
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+  <div class="headertitle"><div class="title">gridfire::policy::HotCNOIIChainPolicy Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html">gridfire::policy::HotCNOIIChainPolicy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html#afeb9b237b70963715adc64ad68e11675">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html">gridfire::policy::HotCNOIIChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8869287d36b3ff143e7f84799ef35dd9">contains</a>(const std::string &amp;id) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8984d58dee6865d4bd98aedf31bb445e">contains</a>(const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ae93a5a2d753ddd32f2a4a5a750ef44b4">get_reactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a0b2c469f8e17ccba0f45632b19395731">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html#abc78c12c490661bfa984791748b3e770">HotCNOIIChainPolicy</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html">gridfire::policy::HotCNOIIChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a2e10b0f832b1addbaa90c14363732c7a">is_active</a>(double T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a69882ddefb0f27b13433616411a1484a">m_reactionIDs</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ad9cd9e4826f60e066feda2ffc5d37338">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a22d731c0a0bf804f7c8b0e22cf13b688">m_tempRange</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html#a262a18dafbc68db925beefb14c43668f">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html">gridfire::policy::HotCNOIIChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950">operator!=</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">operator==</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a07f5a057d382874ec641b3494338dc65">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ab7f64e19d0ce405aba55b518ed301b92">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a4886c44a082151ebf7b75594dbc6856b">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9, std::optional&lt; double &gt; maxT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a74b59b1cb02703834373fb7a3d09614e">~TemperatureDependentChainPolicy</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
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diff --git a/docs/html/classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html b/docs/html/classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::HotCNOIIChainPolicy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Hot CNO II Chain Policy.  
+ <a href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;chains.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::HotCNOIIChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1HotCNOIIChainPolicy__inherit__graph.svg" width="230" height="227"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::policy::HotCNOIIChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1HotCNOIIChainPolicy__coll__graph.svg" width="100%" height="524"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:abc78c12c490661bfa984791748b3e770" id="r_abc78c12c490661bfa984791748b3e770"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html#abc78c12c490661bfa984791748b3e770">HotCNOIIChainPolicy</a> ()</td></tr>
+<tr class="separator:abc78c12c490661bfa984791748b3e770"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afeb9b237b70963715adc64ad68e11675" id="r_afeb9b237b70963715adc64ad68e11675"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html#afeb9b237b70963715adc64ad68e11675">clone</a> () const override</td></tr>
+<tr class="separator:afeb9b237b70963715adc64ad68e11675"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a262a18dafbc68db925beefb14c43668f" id="r_a262a18dafbc68db925beefb14c43668f"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html#a262a18dafbc68db925beefb14c43668f">name</a> () const override</td></tr>
+<tr class="separator:a262a18dafbc68db925beefb14c43668f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td></tr>
+<tr class="memitem:a07f5a057d382874ec641b3494338dc65 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a07f5a057d382874ec641b3494338dc65"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a07f5a057d382874ec641b3494338dc65">TemperatureDependentChainPolicy</a> (const std::vector&lt; std::string &gt; &amp;reactionIDs)</td></tr>
+<tr class="memdesc:a07f5a057d382874ec641b3494338dc65 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a new Temperature Dependent Chain Policy object.  <br /></td></tr>
+<tr class="separator:a07f5a057d382874ec641b3494338dc65 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab7f64e19d0ce405aba55b518ed301b92 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_ab7f64e19d0ce405aba55b518ed301b92"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ab7f64e19d0ce405aba55b518ed301b92">TemperatureDependentChainPolicy</a> (const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9)</td></tr>
+<tr class="memdesc:ab7f64e19d0ce405aba55b518ed301b92 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a new Temperature Dependent Chain Policy object.  <br /></td></tr>
+<tr class="separator:ab7f64e19d0ce405aba55b518ed301b92 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4886c44a082151ebf7b75594dbc6856b inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a4886c44a082151ebf7b75594dbc6856b"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a4886c44a082151ebf7b75594dbc6856b">TemperatureDependentChainPolicy</a> (const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9, std::optional&lt; double &gt; maxT9)</td></tr>
+<tr class="memdesc:a4886c44a082151ebf7b75594dbc6856b inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a new Temperature Dependent Chain Policy object.  <br /></td></tr>
+<tr class="separator:a4886c44a082151ebf7b75594dbc6856b inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a74b59b1cb02703834373fb7a3d09614e inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a74b59b1cb02703834373fb7a3d09614e"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a74b59b1cb02703834373fb7a3d09614e">~TemperatureDependentChainPolicy</a> () override=default</td></tr>
+<tr class="memdesc:a74b59b1cb02703834373fb7a3d09614e inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:a74b59b1cb02703834373fb7a3d09614e inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae93a5a2d753ddd32f2a4a5a750ef44b4 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_ae93a5a2d753ddd32f2a4a5a750ef44b4"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ae93a5a2d753ddd32f2a4a5a750ef44b4">get_reactions</a> () const override</td></tr>
+<tr class="memdesc:ae93a5a2d753ddd32f2a4a5a750ef44b4 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the reactions that comprise the chain.  <br /></td></tr>
+<tr class="separator:ae93a5a2d753ddd32f2a4a5a750ef44b4 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Hot CNO II Chain Policy. </p>
+<p>This class implements the Hot CNO II cycle of nuclear reactions. This chain's minimum temperature is set to T9=0.1 (or 1e8K). This chain includes reactions:</p><ul>
+<li>n15(p,g)o16</li>
+<li>o16(p,g)f17</li>
+<li>f17(p,g)ne18</li>
+<li>ne18(,e+)f18</li>
+<li>f18(p,a)o15</li>
+<li>o15(,e+)n15 </li>
+</ul>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="abc78c12c490661bfa984791748b3e770" name="abc78c12c490661bfa984791748b3e770"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abc78c12c490661bfa984791748b3e770">&#9670;&#160;</a></span>HotCNOIIChainPolicy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::policy::HotCNOIIChainPolicy::HotCNOIIChainPolicy </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="afeb9b237b70963715adc64ad68e11675" name="afeb9b237b70963715adc64ad68e11675"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afeb9b237b70963715adc64ad68e11675">&#9670;&#160;</a></span>clone()</h2>
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+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
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+  </tr>
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+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac24ff49b7715ad3eefea4bed1bf23686">gridfire::policy::ReactionChainPolicy</a>.</p>
+
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+<h2 class="memtitle"><span class="permalink"><a href="#a262a18dafbc68db925beefb14c43668f">&#9670;&#160;</a></span>name()</h2>
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+          <td class="memname">std::string gridfire::policy::HotCNOIIChainPolicy::name </td>
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+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/policy/<a class="el" href="chains_8h.html">chains.h</a></li>
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diff --git a/docs/html/classgridfire_1_1policy_1_1HotCNOIIIChainPolicy-members.html b/docs/html/classgridfire_1_1policy_1_1HotCNOIIIChainPolicy-members.html
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::policy::HotCNOIIIChainPolicy Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html">gridfire::policy::HotCNOIIIChainPolicy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html#a5d86341bb4370647762c889519793d41">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html">gridfire::policy::HotCNOIIIChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8869287d36b3ff143e7f84799ef35dd9">contains</a>(const std::string &amp;id) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8984d58dee6865d4bd98aedf31bb445e">contains</a>(const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ae93a5a2d753ddd32f2a4a5a750ef44b4">get_reactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a0b2c469f8e17ccba0f45632b19395731">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html#aacf63705a61338cc56c081e3f0f66e89">HotCNOIIIChainPolicy</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html">gridfire::policy::HotCNOIIIChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a2e10b0f832b1addbaa90c14363732c7a">is_active</a>(double T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a69882ddefb0f27b13433616411a1484a">m_reactionIDs</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ad9cd9e4826f60e066feda2ffc5d37338">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a22d731c0a0bf804f7c8b0e22cf13b688">m_tempRange</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html#a59168da23f2d6b4d8667f5118153b514">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html">gridfire::policy::HotCNOIIIChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950">operator!=</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">operator==</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a07f5a057d382874ec641b3494338dc65">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ab7f64e19d0ce405aba55b518ed301b92">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a4886c44a082151ebf7b75594dbc6856b">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9, std::optional&lt; double &gt; maxT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a74b59b1cb02703834373fb7a3d09614e">~TemperatureDependentChainPolicy</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
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diff --git a/docs/html/classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html b/docs/html/classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::HotCNOIIIChainPolicy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Hot CNO III Chain Policy.  
+ <a href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;chains.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::HotCNOIIIChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy__inherit__graph.svg" width="234" height="227"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::policy::HotCNOIIIChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy__coll__graph.svg" width="100%" height="524"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:aacf63705a61338cc56c081e3f0f66e89" id="r_aacf63705a61338cc56c081e3f0f66e89"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html#aacf63705a61338cc56c081e3f0f66e89">HotCNOIIIChainPolicy</a> ()</td></tr>
+<tr class="separator:aacf63705a61338cc56c081e3f0f66e89"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5d86341bb4370647762c889519793d41" id="r_a5d86341bb4370647762c889519793d41"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html#a5d86341bb4370647762c889519793d41">clone</a> () const override</td></tr>
+<tr class="separator:a5d86341bb4370647762c889519793d41"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a59168da23f2d6b4d8667f5118153b514"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td></tr>
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+<tr class="memitem:add9c0230ad7c3e6e2cb182bdb4849c52 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_add9c0230ad7c3e6e2cb182bdb4849c52"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">operator==</a> (const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;other) const override</td></tr>
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+<tr class="memitem:a264dc45c3410ab3ec49a340633aa5950 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a264dc45c3410ab3ec49a340633aa5950"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950">operator!=</a> (const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;other) const override</td></tr>
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+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td></tr>
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+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Hot CNO III Chain Policy. </p>
+<p>This class implements the Hot CNO III cycle of nuclear reactions. This chain's minimum temperature is set to T9=0.1 (or 1e8K). This chain includes reactions:</p><ul>
+<li>f18(p,g)ne19</li>
+<li>ne19(,e+)f19</li>
+<li>f19(p,a)o16</li>
+<li>o16(p,g)f17</li>
+<li>f17(p,g)ne18</li>
+<li>ne18(,e+)f18 </li>
+</ul>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
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+<h2 class="memtitle"><span class="permalink"><a href="#aacf63705a61338cc56c081e3f0f66e89">&#9670;&#160;</a></span>HotCNOIIIChainPolicy()</h2>
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+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::policy::HotCNOIIIChainPolicy::HotCNOIIIChainPolicy </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a5d86341bb4370647762c889519793d41" name="a5d86341bb4370647762c889519793d41"></a>
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+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; gridfire::policy::HotCNOIIIChainPolicy::clone </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
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+          <td class="memname">std::string gridfire::policy::HotCNOIIIChainPolicy::name </td>
+          <td>(</td>
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+
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+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::policy::MainSequencePolicy Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a5f38cd1549544854e60c2c7a847c0ea7">build_partition_function</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#af5101829bcb344aa29ea65983732333d">check_status</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#aa9b4e39dacada73756bfd78885da60bd">construct</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a43724347608826a613f6c65385050186">get_engine_stack</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a70c617ea5b13a1cdc62fbfe21963098c">get_engine_types_stack</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a8dbef0e799968af4103e184b6e30c221">get_partition_function</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#adcefccb171b339350a9b4a61d89adbbc">get_seed_reactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a041b0a99120efdc6abae312c568a9e15">get_seed_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a1ecfb6ea2e18e8cf55228f80ee5c50ed">get_status</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a9b55ccd1a059ede5127b07a18274f6e9">m_initializing_composition</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a0416e55a72362487212a92b3d18dfb14">m_network_stack</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a57a7bbb55eb6f96396d87811f34cc0a4">m_partition_function</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a145fe245a253e8ecd4da9726b9379b3c">m_reaction_policy</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a67cda11c3ef95f5ac2ff384965c5a500">m_seed_species</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a023a7cbb9971a787713abaf344848211">m_status</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#acd3224e5781f3d19a8ff300b7fd9a21c">MainSequencePolicy</a>(const fourdst::composition::Composition &amp;composition)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a0fcac0f9d41917f888788a772daaaebc">MainSequencePolicy</a>(std::vector&lt; fourdst::atomic::Species &gt; seed_species, const std::vector&lt; double &gt; &amp;mass_fractions)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a6520ddfead2ba2700e2b1329774b4ff6">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a0d32c22a2d3794c328e8dd24d2cda2be">~NetworkPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html">gridfire::policy::NetworkPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#pri-static-methods">Static Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1policy_1_1MainSequencePolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::MainSequencePolicy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>A <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html" title="Abstract interface for policies that construct DynamicEngine networks from a seed composition.">NetworkPolicy</a> for building reaction networks suitable for low-mass main-sequence stars.  
+ <a href="classgridfire_1_1policy_1_1MainSequencePolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;stellar_policy.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::MainSequencePolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1MainSequencePolicy__inherit__graph.svg" width="228" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::policy::MainSequencePolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1MainSequencePolicy__coll__graph.svg" width="100%" height="580"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:acd3224e5781f3d19a8ff300b7fd9a21c" id="r_acd3224e5781f3d19a8ff300b7fd9a21c"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#acd3224e5781f3d19a8ff300b7fd9a21c">MainSequencePolicy</a> (const fourdst::composition::Composition &amp;composition)</td></tr>
+<tr class="memdesc:acd3224e5781f3d19a8ff300b7fd9a21c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs the policy from an existing composition object.  <br /></td></tr>
+<tr class="separator:acd3224e5781f3d19a8ff300b7fd9a21c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0fcac0f9d41917f888788a772daaaebc" id="r_a0fcac0f9d41917f888788a772daaaebc"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a0fcac0f9d41917f888788a772daaaebc">MainSequencePolicy</a> (std::vector&lt; fourdst::atomic::Species &gt; seed_species, const std::vector&lt; double &gt; &amp;mass_fractions)</td></tr>
+<tr class="memdesc:a0fcac0f9d41917f888788a772daaaebc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs the policy from a list of species and their mass fractions.  <br /></td></tr>
+<tr class="separator:a0fcac0f9d41917f888788a772daaaebc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6520ddfead2ba2700e2b1329774b4ff6" id="r_a6520ddfead2ba2700e2b1329774b4ff6"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a6520ddfead2ba2700e2b1329774b4ff6">name</a> () const override</td></tr>
+<tr class="memdesc:a6520ddfead2ba2700e2b1329774b4ff6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the name of the policy.  <br /></td></tr>
+<tr class="separator:a6520ddfead2ba2700e2b1329774b4ff6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a041b0a99120efdc6abae312c568a9e15" id="r_a041b0a99120efdc6abae312c568a9e15"><td class="memItemLeft" align="right" valign="top">const std::set&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a041b0a99120efdc6abae312c568a9e15">get_seed_species</a> () const override</td></tr>
+<tr class="memdesc:a041b0a99120efdc6abae312c568a9e15"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the set of seed species required by this policy.  <br /></td></tr>
+<tr class="separator:a041b0a99120efdc6abae312c568a9e15"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adcefccb171b339350a9b4a61d89adbbc" id="r_adcefccb171b339350a9b4a61d89adbbc"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#adcefccb171b339350a9b4a61d89adbbc">get_seed_reactions</a> () const override</td></tr>
+<tr class="memdesc:adcefccb171b339350a9b4a61d89adbbc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the set of seed reactions required by this policy (from the PP and CNO chains).  <br /></td></tr>
+<tr class="separator:adcefccb171b339350a9b4a61d89adbbc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa9b4e39dacada73756bfd78885da60bd" id="r_aa9b4e39dacada73756bfd78885da60bd"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#aa9b4e39dacada73756bfd78885da60bd">construct</a> () override</td></tr>
+<tr class="memdesc:aa9b4e39dacada73756bfd78885da60bd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs and returns the complete, multi-layered dynamic engine.  <br /></td></tr>
+<tr class="separator:aa9b4e39dacada73756bfd78885da60bd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1ecfb6ea2e18e8cf55228f80ee5c50ed" id="r_a1ecfb6ea2e18e8cf55228f80ee5c50ed"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109">NetworkPolicyStatus</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a1ecfb6ea2e18e8cf55228f80ee5c50ed">get_status</a> () const override</td></tr>
+<tr class="memdesc:a1ecfb6ea2e18e8cf55228f80ee5c50ed"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the current status of the policy.  <br /></td></tr>
+<tr class="separator:a1ecfb6ea2e18e8cf55228f80ee5c50ed"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a43724347608826a613f6c65385050186" id="r_a43724347608826a613f6c65385050186"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a> &gt; &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a43724347608826a613f6c65385050186">get_engine_stack</a> () const override</td></tr>
+<tr class="separator:a43724347608826a613f6c65385050186"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a70c617ea5b13a1cdc62fbfe21963098c" id="r_a70c617ea5b13a1cdc62fbfe21963098c"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="namespacegridfire_1_1engine.html#a5387db1ec0b039955487fbc4c0034854">engine::EngineTypes</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a70c617ea5b13a1cdc62fbfe21963098c">get_engine_types_stack</a> () const override</td></tr>
+<tr class="separator:a70c617ea5b13a1cdc62fbfe21963098c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8dbef0e799968af4103e184b6e30c221" id="r_a8dbef0e799968af4103e184b6e30c221"><td class="memItemLeft" align="right" valign="top">const std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">partition::PartitionFunction</a> &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a8dbef0e799968af4103e184b6e30c221">get_partition_function</a> () const override</td></tr>
+<tr class="separator:a8dbef0e799968af4103e184b6e30c221"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1NetworkPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1NetworkPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html">gridfire::policy::NetworkPolicy</a></td></tr>
+<tr class="memitem:a0d32c22a2d3794c328e8dd24d2cda2be inherit pub_methods_classgridfire_1_1policy_1_1NetworkPolicy" id="r_a0d32c22a2d3794c328e8dd24d2cda2be"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a0d32c22a2d3794c328e8dd24d2cda2be">~NetworkPolicy</a> ()=default</td></tr>
+<tr class="separator:a0d32c22a2d3794c328e8dd24d2cda2be inherit pub_methods_classgridfire_1_1policy_1_1NetworkPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:af5101829bcb344aa29ea65983732333d" id="r_af5101829bcb344aa29ea65983732333d"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109">NetworkPolicyStatus</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#af5101829bcb344aa29ea65983732333d">check_status</a> () const</td></tr>
+<tr class="separator:af5101829bcb344aa29ea65983732333d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-static-methods" name="pri-static-methods"></a>
+Static Private Member Functions</h2></td></tr>
+<tr class="memitem:a5f38cd1549544854e60c2c7a847c0ea7" id="r_a5f38cd1549544854e60c2c7a847c0ea7"><td class="memItemLeft" align="right" valign="top">static std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">partition::PartitionFunction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a5f38cd1549544854e60c2c7a847c0ea7">build_partition_function</a> ()</td></tr>
+<tr class="separator:a5f38cd1549544854e60c2c7a847c0ea7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a67cda11c3ef95f5ac2ff384965c5a500" id="r_a67cda11c3ef95f5ac2ff384965c5a500"><td class="memItemLeft" align="right" valign="top">std::set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a67cda11c3ef95f5ac2ff384965c5a500">m_seed_species</a></td></tr>
+<tr class="memdesc:a67cda11c3ef95f5ac2ff384965c5a500"><td class="mdescLeft">&#160;</td><td class="mdescRight">The set of seed species required by this policy. These are H-1, He-3, He-4, C-12, N-14, O-16, Ne-20, Mg-24.  <br /></td></tr>
+<tr class="separator:a67cda11c3ef95f5ac2ff384965c5a500"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a145fe245a253e8ecd4da9726b9379b3c" id="r_a145fe245a253e8ecd4da9726b9379b3c"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a145fe245a253e8ecd4da9726b9379b3c">m_reaction_policy</a> = std::make_unique&lt;<a class="el" href="classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html">MainSequenceReactionChainPolicy</a>&gt;()</td></tr>
+<tr class="memdesc:a145fe245a253e8ecd4da9726b9379b3c"><td class="mdescLeft">&#160;</td><td class="mdescRight">The composed reaction chain policy (PP-chain + CNO-cycle).  <br /></td></tr>
+<tr class="separator:a145fe245a253e8ecd4da9726b9379b3c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9b55ccd1a059ede5127b07a18274f6e9" id="r_a9b55ccd1a059ede5127b07a18274f6e9"><td class="memItemLeft" align="right" valign="top">fourdst::composition::Composition&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a9b55ccd1a059ede5127b07a18274f6e9">m_initializing_composition</a></td></tr>
+<tr class="memdesc:a9b55ccd1a059ede5127b07a18274f6e9"><td class="mdescLeft">&#160;</td><td class="mdescRight">The initial composition used to build the network.  <br /></td></tr>
+<tr class="separator:a9b55ccd1a059ede5127b07a18274f6e9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a57a7bbb55eb6f96396d87811f34cc0a4" id="r_a57a7bbb55eb6f96396d87811f34cc0a4"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">partition::PartitionFunction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a57a7bbb55eb6f96396d87811f34cc0a4">m_partition_function</a></td></tr>
+<tr class="memdesc:a57a7bbb55eb6f96396d87811f34cc0a4"><td class="mdescLeft">&#160;</td><td class="mdescRight">The partition function used in network construction.  <br /></td></tr>
+<tr class="separator:a57a7bbb55eb6f96396d87811f34cc0a4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0416e55a72362487212a92b3d18dfb14" id="r_a0416e55a72362487212a92b3d18dfb14"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a> &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a0416e55a72362487212a92b3d18dfb14">m_network_stack</a></td></tr>
+<tr class="memdesc:a0416e55a72362487212a92b3d18dfb14"><td class="mdescLeft">&#160;</td><td class="mdescRight">The stack of dynamic engines constructed by the policy.  <br /></td></tr>
+<tr class="separator:a0416e55a72362487212a92b3d18dfb14"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a023a7cbb9971a787713abaf344848211" id="r_a023a7cbb9971a787713abaf344848211"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109">NetworkPolicyStatus</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a023a7cbb9971a787713abaf344848211">m_status</a> = <a class="el" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109add652546039b18970b8dcf2cff824268">NetworkPolicyStatus::UNINITIALIZED</a></td></tr>
+<tr class="memdesc:a023a7cbb9971a787713abaf344848211"><td class="mdescLeft">&#160;</td><td class="mdescRight">The current status of the policy.  <br /></td></tr>
+<tr class="separator:a023a7cbb9971a787713abaf344848211"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>A <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html" title="Abstract interface for policies that construct DynamicEngine networks from a seed composition.">NetworkPolicy</a> for building reaction networks suitable for low-mass main-sequence stars. </p>
+<p>This policy ensures that a constructed network contains all necessary species and reactions for modeling the core hydrogen burning phase in low-mass stars, primarily the PP-chain and the CNO-cycle.</p>
+<p>The <code><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#aa9b4e39dacada73756bfd78885da60bd" title="Constructs and returns the complete, multi-layered dynamic engine.">construct()</a></code> method builds a stack of engine views (<code>GraphEngine</code> -&gt; <code>MultiscalePartitioningEngineView</code> -&gt; <code>AdaptiveEngineView</code>) to provide a dynamically adjusting, performance-optimized reaction network.</p>
+<p>This policy requires the following seed species:</p><ul>
+<li>H-1</li>
+<li>He-3</li>
+<li>He-4</li>
+<li>C-12</li>
+<li>N-14</li>
+<li>O-16</li>
+<li>Ne-20</li>
+<li>Mg-24</li>
+</ul>
+<p>This policy composes the <code><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html" title="Proton-Proton Chain Policy.">ProtonProtonChainPolicy</a></code> and <code><a class="el" href="classgridfire_1_1policy_1_1CNOChainPolicy.html" title="CNO Chain Policy.">CNOChainPolicy</a></code> to define the required reactions. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="acd3224e5781f3d19a8ff300b7fd9a21c" name="acd3224e5781f3d19a8ff300b7fd9a21c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acd3224e5781f3d19a8ff300b7fd9a21c">&#9670;&#160;</a></span>MainSequencePolicy() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::policy::MainSequencePolicy::MainSequencePolicy </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>composition</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructs the policy from an existing composition object. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">composition</td><td>The initial composition, which must contain all seed species required by the policy.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname"><a class="el" href="classgridfire_1_1exceptions_1_1MissingSeedSpeciesError.html" title="Exception thrown when a required seed species is not found in the initial composition.">exceptions::MissingSeedSpeciesError</a></td><td>if the provided <code>composition</code> is missing a required species.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line">fourdst::composition::Composition comp;</div>
+<div class="line"><span class="comment">// ... populate composition ...</span></div>
+<div class="line">LowMassMainSequencePolicy policy(comp);</div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<a id="a0fcac0f9d41917f888788a772daaaebc" name="a0fcac0f9d41917f888788a772daaaebc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0fcac0f9d41917f888788a772daaaebc">&#9670;&#160;</a></span>MainSequencePolicy() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::policy::MainSequencePolicy::MainSequencePolicy </td>
+          <td>(</td>
+          <td class="paramtype">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td>
+          <td class="paramname"><em>seed_species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>mass_fractions</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructs the policy from a list of species and their mass fractions. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">seed_species</td><td>A vector of atomic species. </td></tr>
+    <tr><td class="paramname">mass_fractions</td><td>A vector of corresponding mass fractions.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname"><a class="el" href="classgridfire_1_1exceptions_1_1MissingSeedSpeciesError.html" title="Exception thrown when a required seed species is not found in the initial composition.">exceptions::MissingSeedSpeciesError</a></td><td>if the provided species list is missing a required seed species. </td></tr>
+    <tr><td class="paramname">fourdst::composition::exceptions::CompositionNotFinalizedError</td><td>if the internal composition fails to finalize.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keyword">using namespace </span>fourdst::atomic;</div>
+<div class="line">std::vector&lt;Species&gt; species = {H_1, He_4, C_12, O_16};</div>
+<div class="line">std::vector&lt;double&gt; mass_fractions = {0.7, 0.28, 0.01, 0.01};</div>
+<div class="line">LowMassMainSequencePolicy policy(species, mass_fractions);</div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a5f38cd1549544854e60c2c7a847c0ea7" name="a5f38cd1549544854e60c2c7a847c0ea7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5f38cd1549544854e60c2c7a847c0ea7">&#9670;&#160;</a></span>build_partition_function()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">partition::PartitionFunction</a> &gt; gridfire::policy::MainSequencePolicy::build_partition_function </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">static</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="af5101829bcb344aa29ea65983732333d" name="af5101829bcb344aa29ea65983732333d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af5101829bcb344aa29ea65983732333d">&#9670;&#160;</a></span>check_status()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109">NetworkPolicyStatus</a> gridfire::policy::MainSequencePolicy::check_status </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aa9b4e39dacada73756bfd78885da60bd" name="aa9b4e39dacada73756bfd78885da60bd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa9b4e39dacada73756bfd78885da60bd">&#9670;&#160;</a></span>construct()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a> &amp; gridfire::policy::MainSequencePolicy::construct </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructs and returns the complete, multi-layered dynamic engine. </p>
+<p>This method builds the full network engine stack:</p><ul>
+<li>A base <code>GraphEngine</code> is created with the initial composition. This is constructed three layers deep which is sufficient to capture all required reactions. Further a composite ground state and Rauscher Thielemann partition function is used.</li>
+<li>A <code>MultiscalePartitioningEngineView</code> is layered on top for performance optimization. This will put some species into equilibrium groups based on their reaction timescales.</li>
+<li>An <code>AdaptiveEngineView</code> is added as the final layer to dynamically cull reaction pathways based on molar reaction flows.</li>
+</ul>
+<p>After construction, it verifies that the resulting network meets the policy's requirements.</p>
+<dl class="section return"><dt>Returns</dt><dd>DynamicEngine&amp; A reference to the top-level <code>AdaptiveEngineView</code>.</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname"><a class="el" href="classgridfire_1_1exceptions_1_1MissingKeyReactionError.html" title="Exception thrown when a constructed network fails to include a key reaction required by the policy.">exceptions::MissingKeyReactionError</a></td><td>if the final network is missing a required reaction. </td></tr>
+    <tr><td class="paramname"><a class="el" href="classgridfire_1_1exceptions_1_1MissingSeedSpeciesError.html" title="Exception thrown when a required seed species is not found in the initial composition.">exceptions::MissingSeedSpeciesError</a></td><td>if the final network is missing a required species. </td></tr>
+    <tr><td class="paramname"><a class="el" href="classgridfire_1_1exceptions_1_1PolicyError.html" title="Base class for all exceptions related to network policy operations.">exceptions::PolicyError</a></td><td>on other verification failures.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line">LowMassMainSequencePolicy enginePolicy(composition);</div>
+<div class="line">DynamicEngine&amp; engine = enginePolicy.construct();</div>
+<div class="line"><a class="code hl_class" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">solver::CVODESolverStrategy</a> solver(engine);</div>
+<div class="line"><span class="comment">// ... run solver ...</span></div>
+<div class="ttc" id="aclassgridfire_1_1solver_1_1CVODESolverStrategy_html"><div class="ttname"><a href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></div><div class="ttdoc">Stiff ODE integrator backed by SUNDIALS CVODE (BDF) for network + energy.</div><div class="ttdef"><b>Definition</b> CVODE_solver_strategy.h:81</div></div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a13cd74c967592392b01d8fe9a5b34d88">gridfire::policy::NetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a43724347608826a613f6c65385050186" name="a43724347608826a613f6c65385050186"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a43724347608826a613f6c65385050186">&#9670;&#160;</a></span>get_engine_stack()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a> &gt; &gt; &amp; gridfire::policy::MainSequencePolicy::get_engine_stack </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a92891fe37b8684fe9f1c5958674de2d5">gridfire::policy::NetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a70c617ea5b13a1cdc62fbfe21963098c" name="a70c617ea5b13a1cdc62fbfe21963098c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a70c617ea5b13a1cdc62fbfe21963098c">&#9670;&#160;</a></span>get_engine_types_stack()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; <a class="el" href="namespacegridfire_1_1engine.html#a5387db1ec0b039955487fbc4c0034854">engine::EngineTypes</a> &gt; gridfire::policy::MainSequencePolicy::get_engine_types_stack </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#aac63625678d287d0ca36c98f51e86dd2">gridfire::policy::NetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a8dbef0e799968af4103e184b6e30c221" name="a8dbef0e799968af4103e184b6e30c221"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8dbef0e799968af4103e184b6e30c221">&#9670;&#160;</a></span>get_partition_function()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">partition::PartitionFunction</a> &gt; &amp; gridfire::policy::MainSequencePolicy::get_partition_function </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a1c395eb83b0bcf728db230e7772aabcf">gridfire::policy::NetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="adcefccb171b339350a9b4a61d89adbbc" name="adcefccb171b339350a9b4a61d89adbbc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adcefccb171b339350a9b4a61d89adbbc">&#9670;&#160;</a></span>get_seed_reactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp; gridfire::policy::MainSequencePolicy::get_seed_reactions </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Returns the set of seed reactions required by this policy (from the PP and CNO chains). </p>
+<dl class="section return"><dt>Returns</dt><dd>const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a>&amp; </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#aa33fcee020f5acd8e14aadaf3758ad2f">gridfire::policy::NetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a041b0a99120efdc6abae312c568a9e15" name="a041b0a99120efdc6abae312c568a9e15"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a041b0a99120efdc6abae312c568a9e15">&#9670;&#160;</a></span>get_seed_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::set&lt; fourdst::atomic::Species &gt; &amp; gridfire::policy::MainSequencePolicy::get_seed_species </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Returns the set of seed species required by this policy. </p>
+<dl class="section return"><dt>Returns</dt><dd>const std::set&lt;fourdst::atomic::Species&gt;&amp; </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#afb599d76b423f7a39b322c967302b49b">gridfire::policy::NetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a1ecfb6ea2e18e8cf55228f80ee5c50ed" name="a1ecfb6ea2e18e8cf55228f80ee5c50ed"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1ecfb6ea2e18e8cf55228f80ee5c50ed">&#9670;&#160;</a></span>get_status()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109">NetworkPolicyStatus</a> gridfire::policy::MainSequencePolicy::get_status </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the current status of the policy. </p>
+<dl class="section return"><dt>Returns</dt><dd>NetworkPolicyStatus The construction and verification status. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a3d0f2aee8ead71da4d421fb659fb30f7">gridfire::policy::NetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a6520ddfead2ba2700e2b1329774b4ff6" name="a6520ddfead2ba2700e2b1329774b4ff6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6520ddfead2ba2700e2b1329774b4ff6">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::policy::MainSequencePolicy::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Returns the name of the policy. </p>
+<dl class="section return"><dt>Returns</dt><dd>"MainSequencePolicy" </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#aa59c1baf7077a5d35d45ff753b32a565">gridfire::policy::NetworkPolicy</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a9b55ccd1a059ede5127b07a18274f6e9" name="a9b55ccd1a059ede5127b07a18274f6e9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9b55ccd1a059ede5127b07a18274f6e9">&#9670;&#160;</a></span>m_initializing_composition</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::composition::Composition gridfire::policy::MainSequencePolicy::m_initializing_composition</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>The initial composition used to build the network. </p>
+
+</div>
+</div>
+<a id="a0416e55a72362487212a92b3d18dfb14" name="a0416e55a72362487212a92b3d18dfb14"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0416e55a72362487212a92b3d18dfb14">&#9670;&#160;</a></span>m_network_stack</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;std::unique_ptr&lt;<a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a>&gt; &gt; gridfire::policy::MainSequencePolicy::m_network_stack</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>The stack of dynamic engines constructed by the policy. </p>
+
+</div>
+</div>
+<a id="a57a7bbb55eb6f96396d87811f34cc0a4" name="a57a7bbb55eb6f96396d87811f34cc0a4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a57a7bbb55eb6f96396d87811f34cc0a4">&#9670;&#160;</a></span>m_partition_function</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt;<a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">partition::PartitionFunction</a>&gt; gridfire::policy::MainSequencePolicy::m_partition_function</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>The partition function used in network construction. </p>
+
+</div>
+</div>
+<a id="a145fe245a253e8ecd4da9726b9379b3c" name="a145fe245a253e8ecd4da9726b9379b3c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a145fe245a253e8ecd4da9726b9379b3c">&#9670;&#160;</a></span>m_reaction_policy</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt;<a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a>&gt; gridfire::policy::MainSequencePolicy::m_reaction_policy = std::make_unique&lt;<a class="el" href="classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html">MainSequenceReactionChainPolicy</a>&gt;()</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>The composed reaction chain policy (PP-chain + CNO-cycle). </p>
+
+</div>
+</div>
+<a id="a67cda11c3ef95f5ac2ff384965c5a500" name="a67cda11c3ef95f5ac2ff384965c5a500"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a67cda11c3ef95f5ac2ff384965c5a500">&#9670;&#160;</a></span>m_seed_species</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::set&lt;fourdst::atomic::Species&gt; gridfire::policy::MainSequencePolicy::m_seed_species</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>The set of seed species required by this policy. These are H-1, He-3, He-4, C-12, N-14, O-16, Ne-20, Mg-24. </p>
+
+</div>
+</div>
+<a id="a023a7cbb9971a787713abaf344848211" name="a023a7cbb9971a787713abaf344848211"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a023a7cbb9971a787713abaf344848211">&#9670;&#160;</a></span>m_status</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109">NetworkPolicyStatus</a> gridfire::policy::MainSequencePolicy::m_status = <a class="el" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109add652546039b18970b8dcf2cff824268">NetworkPolicyStatus::UNINITIALIZED</a></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>The current status of the policy. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/policy/<a class="el" href="stellar__policy_8h.html">stellar_policy.h</a></li>
+<li>src/lib/policy/<a class="el" href="stellar__policy_8cpp.html">stellar_policy.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1policy.html">policy</a></li><li class="navelem"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">MainSequencePolicy</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1policy_1_1MainSequencePolicy.js b/docs/html/classgridfire_1_1policy_1_1MainSequencePolicy.js
new file mode 100644
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+++ b/docs/html/classgridfire_1_1policy_1_1MainSequencePolicy.js
@@ -0,0 +1,21 @@
+var classgridfire_1_1policy_1_1MainSequencePolicy =
+[
+    [ "MainSequencePolicy", "classgridfire_1_1policy_1_1MainSequencePolicy.html#acd3224e5781f3d19a8ff300b7fd9a21c", null ],
+    [ "MainSequencePolicy", "classgridfire_1_1policy_1_1MainSequencePolicy.html#a0fcac0f9d41917f888788a772daaaebc", null ],
+    [ "build_partition_function", "classgridfire_1_1policy_1_1MainSequencePolicy.html#a5f38cd1549544854e60c2c7a847c0ea7", null ],
+    [ "check_status", "classgridfire_1_1policy_1_1MainSequencePolicy.html#af5101829bcb344aa29ea65983732333d", null ],
+    [ "construct", "classgridfire_1_1policy_1_1MainSequencePolicy.html#aa9b4e39dacada73756bfd78885da60bd", null ],
+    [ "get_engine_stack", "classgridfire_1_1policy_1_1MainSequencePolicy.html#a43724347608826a613f6c65385050186", null ],
+    [ "get_engine_types_stack", "classgridfire_1_1policy_1_1MainSequencePolicy.html#a70c617ea5b13a1cdc62fbfe21963098c", null ],
+    [ "get_partition_function", "classgridfire_1_1policy_1_1MainSequencePolicy.html#a8dbef0e799968af4103e184b6e30c221", null ],
+    [ "get_seed_reactions", "classgridfire_1_1policy_1_1MainSequencePolicy.html#adcefccb171b339350a9b4a61d89adbbc", null ],
+    [ "get_seed_species", "classgridfire_1_1policy_1_1MainSequencePolicy.html#a041b0a99120efdc6abae312c568a9e15", null ],
+    [ "get_status", "classgridfire_1_1policy_1_1MainSequencePolicy.html#a1ecfb6ea2e18e8cf55228f80ee5c50ed", null ],
+    [ "name", "classgridfire_1_1policy_1_1MainSequencePolicy.html#a6520ddfead2ba2700e2b1329774b4ff6", null ],
+    [ "m_initializing_composition", "classgridfire_1_1policy_1_1MainSequencePolicy.html#a9b55ccd1a059ede5127b07a18274f6e9", null ],
+    [ "m_network_stack", "classgridfire_1_1policy_1_1MainSequencePolicy.html#a0416e55a72362487212a92b3d18dfb14", null ],
+    [ "m_partition_function", "classgridfire_1_1policy_1_1MainSequencePolicy.html#a57a7bbb55eb6f96396d87811f34cc0a4", null ],
+    [ "m_reaction_policy", "classgridfire_1_1policy_1_1MainSequencePolicy.html#a145fe245a253e8ecd4da9726b9379b3c", null ],
+    [ "m_seed_species", "classgridfire_1_1policy_1_1MainSequencePolicy.html#a67cda11c3ef95f5ac2ff384965c5a500", null ],
+    [ "m_status", "classgridfire_1_1policy_1_1MainSequencePolicy.html#a023a7cbb9971a787713abaf344848211", null ]
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+  <div class="headertitle"><div class="title">gridfire::policy::MainSequenceReactionChainPolicy Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html">gridfire::policy::MainSequenceReactionChainPolicy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a2317c6351bb1fc07ff0a27cd358b4f73">begin</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a6b340b7bdb8cf9e32f004074b1901815">begin</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab3bbbf21164211a01c5398a0ee281bb2">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a792cf0af8e5c365d0332cd585968dae1">contains</a>(const std::string &amp;id) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a864a00097e80db7b0f3838d696aa9f5d">contains</a>(const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aaa71cb8b9c72af7047c4ae54b8c33915">end</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a8f2f648e161d1935c27729bcd6054187">end</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aeec13e231994234c1ae2b12a0dd7220b">get_chain_policies</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ae689a0dfeb36f85ddc6db5a8dc4f630a">get_reactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ae5ac6534ec96cfcdefcad2f9694efd36">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a8ef92bf3b66d77f8141bb6010e909e99">m_chain_policies</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#adaf3fa4b8cd0fde5994f54494701c32d">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html#ae5835bde640ea7af5752a09c2be1c6cf">MainSequenceReactionChainPolicy</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html">gridfire::policy::MainSequenceReactionChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab0e3ba293b5e52d595dfa02db4fcbee7">MultiReactionChainPolicy</a>(std::vector&lt; std::unique_ptr&lt; ReactionChainPolicy &gt; &gt; &amp;&amp;chain_policies)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html#a7411e9a885d7ebb79590d8e1c5834881">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html">gridfire::policy::MainSequenceReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aa36844fe4417617175d31124e541da50">operator!=</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#abc3ed7c255b3e6c06e292aee8ef7f46d">operator==</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a84fcdc2adab96284d850f8dd43315278">size</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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diff --git a/docs/html/classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html b/docs/html/classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::MainSequenceReactionChainPolicy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Main Sequence Reaction Chain Policy.  
+ <a href="classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;chains.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::MainSequenceReactionChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy__inherit__graph.svg" width="228" height="227"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::policy::MainSequenceReactionChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy__coll__graph.svg" width="100%" height="570"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:ae5835bde640ea7af5752a09c2be1c6cf" id="r_ae5835bde640ea7af5752a09c2be1c6cf"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html#ae5835bde640ea7af5752a09c2be1c6cf">MainSequenceReactionChainPolicy</a> ()</td></tr>
+<tr class="separator:ae5835bde640ea7af5752a09c2be1c6cf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7411e9a885d7ebb79590d8e1c5834881" id="r_a7411e9a885d7ebb79590d8e1c5834881"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html#a7411e9a885d7ebb79590d8e1c5834881">name</a> () const override</td></tr>
+<tr class="separator:a7411e9a885d7ebb79590d8e1c5834881"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td></tr>
+<tr class="memitem:ab0e3ba293b5e52d595dfa02db4fcbee7 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy" id="r_ab0e3ba293b5e52d595dfa02db4fcbee7"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab0e3ba293b5e52d595dfa02db4fcbee7">MultiReactionChainPolicy</a> (std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; &gt; &amp;&amp;chain_policies)</td></tr>
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+<tr class="memitem:aeec13e231994234c1ae2b12a0dd7220b inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy" id="r_aeec13e231994234c1ae2b12a0dd7220b"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aeec13e231994234c1ae2b12a0dd7220b">get_chain_policies</a> () const</td></tr>
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+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Main Sequence Reaction Chain Policy. </p>
+<p>This class implements the main sequence reaction chains, combining the Proton-Proton chain and the CNO cycle. Enforcing this chain in the policy will ensure that all the primary reactions for main sequence stars are included in the network.</p>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html" title="Proton-Proton Chain Policy.">ProtonProtonChainPolicy</a> </dd>
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+<a class="el" href="classgridfire_1_1policy_1_1CNOChainPolicy.html" title="CNO Chain Policy.">CNOChainPolicy</a> </dd></dl>
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+  <div class="headertitle"><div class="title">gridfire::policy::MultiReactionChainPolicy Member List</div></div>
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+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a2317c6351bb1fc07ff0a27cd358b4f73">begin</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a6b340b7bdb8cf9e32f004074b1901815">begin</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab3bbbf21164211a01c5398a0ee281bb2">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a792cf0af8e5c365d0332cd585968dae1">contains</a>(const std::string &amp;id) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a864a00097e80db7b0f3838d696aa9f5d">contains</a>(const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aaa71cb8b9c72af7047c4ae54b8c33915">end</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a8f2f648e161d1935c27729bcd6054187">end</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aeec13e231994234c1ae2b12a0dd7220b">get_chain_policies</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ae689a0dfeb36f85ddc6db5a8dc4f630a">get_reactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ae5ac6534ec96cfcdefcad2f9694efd36">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a8ef92bf3b66d77f8141bb6010e909e99">m_chain_policies</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#adaf3fa4b8cd0fde5994f54494701c32d">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab0e3ba293b5e52d595dfa02db4fcbee7">MultiReactionChainPolicy</a>(std::vector&lt; std::unique_ptr&lt; ReactionChainPolicy &gt; &gt; &amp;&amp;chain_policies)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ac21f837d0d452d32588451f48d5482e6">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aa36844fe4417617175d31124e541da50">operator!=</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#abc3ed7c255b3e6c06e292aee8ef7f46d">operator==</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a84fcdc2adab96284d850f8dd43315278">size</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pro-attribs">Protected Attributes</a> &#124;
+<a href="classgridfire_1_1policy_1_1MultiReactionChainPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::MultiReactionChainPolicy Class Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>A <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> composed of multiple child <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances.  
+ <a href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;policy_logical.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::MultiReactionChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1MultiReactionChainPolicy__inherit__graph.svg" width="100%" height="482"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::policy::MultiReactionChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1MultiReactionChainPolicy__coll__graph.svg" width="100%" height="570"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:ab0e3ba293b5e52d595dfa02db4fcbee7" id="r_ab0e3ba293b5e52d595dfa02db4fcbee7"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab0e3ba293b5e52d595dfa02db4fcbee7">MultiReactionChainPolicy</a> (std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; &gt; &amp;&amp;chain_policies)</td></tr>
+<tr class="memdesc:ab0e3ba293b5e52d595dfa02db4fcbee7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a> from a vector of <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances.  <br /></td></tr>
+<tr class="separator:ab0e3ba293b5e52d595dfa02db4fcbee7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aeec13e231994234c1ae2b12a0dd7220b" id="r_aeec13e231994234c1ae2b12a0dd7220b"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aeec13e231994234c1ae2b12a0dd7220b">get_chain_policies</a> () const</td></tr>
+<tr class="memdesc:aeec13e231994234c1ae2b12a0dd7220b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the vector of child <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances.  <br /></td></tr>
+<tr class="separator:aeec13e231994234c1ae2b12a0dd7220b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae689a0dfeb36f85ddc6db5a8dc4f630a" id="r_ae689a0dfeb36f85ddc6db5a8dc4f630a"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ae689a0dfeb36f85ddc6db5a8dc4f630a">get_reactions</a> () const override</td></tr>
+<tr class="memdesc:ae689a0dfeb36f85ddc6db5a8dc4f630a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the combined ReactionSet of all child chain policies.  <br /></td></tr>
+<tr class="separator:ae689a0dfeb36f85ddc6db5a8dc4f630a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a792cf0af8e5c365d0332cd585968dae1" id="r_a792cf0af8e5c365d0332cd585968dae1"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a792cf0af8e5c365d0332cd585968dae1">contains</a> (const std::string &amp;id) const override</td></tr>
+<tr class="memdesc:a792cf0af8e5c365d0332cd585968dae1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a> contains a reaction by ID.  <br /></td></tr>
+<tr class="separator:a792cf0af8e5c365d0332cd585968dae1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a864a00097e80db7b0f3838d696aa9f5d" id="r_a864a00097e80db7b0f3838d696aa9f5d"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a864a00097e80db7b0f3838d696aa9f5d">contains</a> (const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;reaction) const override</td></tr>
+<tr class="memdesc:a864a00097e80db7b0f3838d696aa9f5d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a> contains a specific reaction.  <br /></td></tr>
+<tr class="separator:a864a00097e80db7b0f3838d696aa9f5d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:ab3bbbf21164211a01c5398a0ee281bb2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Creates a deep copy of the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a>.  <br /></td></tr>
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+<tr class="memdesc:ae5ac6534ec96cfcdefcad2f9694efd36"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes a hash value for the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a>.  <br /></td></tr>
+<tr class="separator:ae5ac6534ec96cfcdefcad2f9694efd36"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:abc3ed7c255b3e6c06e292aee8ef7f46d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Equality comparison operator.  <br /></td></tr>
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+<tr class="memdesc:aa36844fe4417617175d31124e541da50"><td class="mdescLeft">&#160;</td><td class="mdescRight">Inequality comparison operator.  <br /></td></tr>
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+<tr class="memdesc:a84fcdc2adab96284d850f8dd43315278"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the number of child <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances.  <br /></td></tr>
+<tr class="separator:a84fcdc2adab96284d850f8dd43315278"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a2317c6351bb1fc07ff0a27cd358b4f73"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns iterator to the beginning of the child <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances.  <br /></td></tr>
+<tr class="separator:a2317c6351bb1fc07ff0a27cd358b4f73"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a6b340b7bdb8cf9e32f004074b1901815"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns const iterator to the beginning of the child <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances.  <br /></td></tr>
+<tr class="separator:a6b340b7bdb8cf9e32f004074b1901815"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:aaa71cb8b9c72af7047c4ae54b8c33915"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns iterator to the end of the child <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances.  <br /></td></tr>
+<tr class="separator:aaa71cb8b9c72af7047c4ae54b8c33915"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a8f2f648e161d1935c27729bcd6054187"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns const iterator to the end of the child <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances.  <br /></td></tr>
+<tr class="separator:a8f2f648e161d1935c27729bcd6054187"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td></tr>
+<tr class="memitem:aa3e6c1e4844fe788aeb08d272070ae13 inherit pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy" id="r_aa3e6c1e4844fe788aeb08d272070ae13"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a> ()=default</td></tr>
+<tr class="separator:aa3e6c1e4844fe788aeb08d272070ae13 inherit pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pro-attribs" name="pro-attribs"></a>
+Protected Attributes</h2></td></tr>
+<tr class="memitem:a8ef92bf3b66d77f8141bb6010e909e99" id="r_a8ef92bf3b66d77f8141bb6010e909e99"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a8ef92bf3b66d77f8141bb6010e909e99">m_chain_policies</a> {}</td></tr>
+<tr class="memdesc:a8ef92bf3b66d77f8141bb6010e909e99"><td class="mdescLeft">&#160;</td><td class="mdescRight">Child chain policies.  <br /></td></tr>
+<tr class="separator:a8ef92bf3b66d77f8141bb6010e909e99"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adaf3fa4b8cd0fde5994f54494701c32d" id="r_adaf3fa4b8cd0fde5994f54494701c32d"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#adaf3fa4b8cd0fde5994f54494701c32d">m_reactions</a></td></tr>
+<tr class="memdesc:adaf3fa4b8cd0fde5994f54494701c32d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Combined reactions from all child policies.  <br /></td></tr>
+<tr class="separator:adaf3fa4b8cd0fde5994f54494701c32d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>A <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> composed of multiple child <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances. </p>
+<p>Useful for policies that represent a union of several reaction chains (for example the <code>LowMassMainSequenceReactionChainPolicy</code> composes the proton-proton and CNO chains).</p>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line">LowMassMainSequenceReactionChainPolicy multi;</div>
+<div class="line"><span class="keyword">const</span> <span class="keyword">auto</span> &amp;chains = multi.get_chain_policies();</div>
+<div class="line"><span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span> &amp;ch : chains) { std::cout &lt;&lt; ch-&gt;get_reactions().size() &lt;&lt; <span class="stringliteral">&quot; reactions\n&quot;</span>; }</div>
+</div><!-- fragment --> </dd></dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="ab0e3ba293b5e52d595dfa02db4fcbee7" name="ab0e3ba293b5e52d595dfa02db4fcbee7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab0e3ba293b5e52d595dfa02db4fcbee7">&#9670;&#160;</a></span>MultiReactionChainPolicy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::policy::MultiReactionChainPolicy::MultiReactionChainPolicy </td>
+          <td>(</td>
+          <td class="paramtype">std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; &gt; &amp;&amp;&#160;</td>
+          <td class="paramname"><em>chain_policies</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructs a <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a> from a vector of <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances. </p>
+<p>The provided chain policies are moved into the new <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a> instance.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">chain_policies</td><td>vector of unique_ptr to <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line">std::vector&lt;std::unique_ptr&lt;ReactionChainPolicy&gt;&gt; chains;</div>
+<div class="line">chains.push_back(std::make_unique&lt;ProtonProtonChainPolicy&gt;());</div>
+<div class="line">chains.push_back(std::make_unique&lt;CNOChainPolicy&gt;());</div>
+<div class="line"><a class="code hl_class" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">MultiReactionChainPolicy</a> multi(std::move(chains));</div>
+<div class="ttc" id="aclassgridfire_1_1policy_1_1MultiReactionChainPolicy_html"><div class="ttname"><a href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></div><div class="ttdoc">A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.</div><div class="ttdef"><b>Definition</b> policy_logical.h:23</div></div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a2317c6351bb1fc07ff0a27cd358b4f73" name="a2317c6351bb1fc07ff0a27cd358b4f73"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2317c6351bb1fc07ff0a27cd358b4f73">&#9670;&#160;</a></span>begin() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::policy::MultiReactionChainPolicy::begin </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Returns iterator to the beginning of the child <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances. </p>
+<dl class="section return"><dt>Returns</dt><dd>iterator to the beginning.</dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keywordflow">for</span> (<span class="keyword">auto</span> it = multi.begin(); it != multi.end(); ++it) {</div>
+<div class="line">    std::cout &lt;&lt; (*it)-&gt;name() &lt;&lt; std::endl;</div>
+<div class="line">}</div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<a id="a6b340b7bdb8cf9e32f004074b1901815" name="a6b340b7bdb8cf9e32f004074b1901815"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6b340b7bdb8cf9e32f004074b1901815">&#9670;&#160;</a></span>begin() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::policy::MultiReactionChainPolicy::begin </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Returns const iterator to the beginning of the child <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances. </p>
+<dl class="section return"><dt>Returns</dt><dd>const iterator to the beginning.</dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keywordflow">for</span> (<span class="keyword">auto</span> it = multi.begin(); it != multi.end(); ++it) {</div>
+<div class="line">    std::cout &lt;&lt; (*it)-&gt;name() &lt;&lt; std::endl;</div>
+<div class="line">}</div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<a id="ab3bbbf21164211a01c5398a0ee281bb2" name="ab3bbbf21164211a01c5398a0ee281bb2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab3bbbf21164211a01c5398a0ee281bb2">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; gridfire::policy::MultiReactionChainPolicy::clone </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Creates a deep copy of the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a>. </p>
+<dl class="section return"><dt>Returns</dt><dd>std::unique_ptr&lt;ReactionChainPolicy&gt; unique pointer to the cloned instance.</dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line">std::unique_ptr&lt;ReactionChainPolicy&gt; <a class="code hl_function" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab3bbbf21164211a01c5398a0ee281bb2">clone</a> = multi.clone();</div>
+<div class="ttc" id="aclassgridfire_1_1policy_1_1MultiReactionChainPolicy_html_ab3bbbf21164211a01c5398a0ee281bb2"><div class="ttname"><a href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab3bbbf21164211a01c5398a0ee281bb2">gridfire::policy::MultiReactionChainPolicy::clone</a></div><div class="ttdeci">std::unique_ptr&lt; ReactionChainPolicy &gt; clone() const override</div><div class="ttdoc">Creates a deep copy of the MultiReactionChainPolicy.</div><div class="ttdef"><b>Definition</b> policy_logical.cpp:32</div></div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac24ff49b7715ad3eefea4bed1bf23686">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a864a00097e80db7b0f3838d696aa9f5d" name="a864a00097e80db7b0f3838d696aa9f5d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a864a00097e80db7b0f3838d696aa9f5d">&#9670;&#160;</a></span>contains() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::policy::MultiReactionChainPolicy::contains </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Checks if the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a> contains a specific reaction. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>the Reaction to check for. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if the reaction is present in the combined ReactionSet, false otherwise.</dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><a class="code hl_class" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> r = ...; <span class="comment">// obtain a Reaction instance</span></div>
+<div class="line"><span class="keywordtype">bool</span> has_reaction = multi.contains(r);</div>
+<div class="ttc" id="aclassgridfire_1_1reaction_1_1Reaction_html"><div class="ttname"><a href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></div><div class="ttdoc">Represents a single nuclear reaction from a specific data source.</div><div class="ttdef"><b>Definition</b> reaction.h:98</div></div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a68239737ada169238251f1994680fc7e">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a792cf0af8e5c365d0332cd585968dae1" name="a792cf0af8e5c365d0332cd585968dae1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a792cf0af8e5c365d0332cd585968dae1">&#9670;&#160;</a></span>contains() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::policy::MultiReactionChainPolicy::contains </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>id</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Checks if the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a> contains a reaction by ID. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">id</td><td>the reaction ID to check for. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if the reaction ID is present in the combined ReactionSet, false otherwise.</dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keywordtype">bool</span> has_pp = multi.contains(<span class="stringliteral">&quot;p(p,e+)d&quot;</span>);</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a0c9a42646920ac02c8d1e63dfe6f9461">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="aaa71cb8b9c72af7047c4ae54b8c33915" name="aaa71cb8b9c72af7047c4ae54b8c33915"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaa71cb8b9c72af7047c4ae54b8c33915">&#9670;&#160;</a></span>end() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::policy::MultiReactionChainPolicy::end </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Returns iterator to the end of the child <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances. </p>
+<dl class="section return"><dt>Returns</dt><dd>iterator to the end.</dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keywordflow">for</span> (<span class="keyword">auto</span> it = multi.begin(); it != multi.end(); ++it) {</div>
+<div class="line">    std::cout &lt;&lt; (*it)-&gt;name() &lt;&lt; std::endl;</div>
+<div class="line">}</div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<a id="a8f2f648e161d1935c27729bcd6054187" name="a8f2f648e161d1935c27729bcd6054187"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8f2f648e161d1935c27729bcd6054187">&#9670;&#160;</a></span>end() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::policy::MultiReactionChainPolicy::end </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Returns const iterator to the end of the child <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances. </p>
+<dl class="section return"><dt>Returns</dt><dd>const iterator to the end.</dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keywordflow">for</span> (<span class="keyword">auto</span> it = multi.begin(); it != multi.end(); ++it) {</div>
+<div class="line">    std::cout &lt;&lt; (*it)-&gt;name() &lt;&lt; std::endl;</div>
+<div class="line">}</div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<a id="aeec13e231994234c1ae2b12a0dd7220b" name="aeec13e231994234c1ae2b12a0dd7220b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aeec13e231994234c1ae2b12a0dd7220b">&#9670;&#160;</a></span>get_chain_policies()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; &gt; &amp; gridfire::policy::MultiReactionChainPolicy::get_chain_policies </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Returns the vector of child <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances. </p>
+<dl class="section return"><dt>Returns</dt><dd>const std::vector&lt;std::unique_ptr&lt;ReactionChainPolicy&gt;&gt;&amp; reference to the child chain policies.</dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keyword">const</span> <span class="keyword">auto</span> &amp;chains = multi.get_chain_policies();</div>
+<div class="line"><span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span> &amp;ch : chains) { std::cout &lt;&lt; ch-&gt;get_reactions().size() &lt;&lt; <span class="stringliteral">&quot; reactions\n&quot;</span>; }</div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<a id="ae689a0dfeb36f85ddc6db5a8dc4f630a" name="ae689a0dfeb36f85ddc6db5a8dc4f630a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae689a0dfeb36f85ddc6db5a8dc4f630a">&#9670;&#160;</a></span>get_reactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp; gridfire::policy::MultiReactionChainPolicy::get_reactions </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Returns the combined ReactionSet of all child chain policies. </p>
+<dl class="section return"><dt>Returns</dt><dd>const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a>&amp; reference to the combined reactions.</dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keyword">const</span> <span class="keyword">auto</span> &amp;reactions = multi.get_reactions();</div>
+<div class="line">std::cout &lt;&lt; <span class="stringliteral">&quot;Multi chain contains &quot;</span> &lt;&lt; reactions.size() &lt;&lt; <span class="stringliteral">&quot; reactions\n&quot;</span>;</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ad8bccf78e7fc99d08387aec5015e8849">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="ae5ac6534ec96cfcdefcad2f9694efd36" name="ae5ac6534ec96cfcdefcad2f9694efd36"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae5ac6534ec96cfcdefcad2f9694efd36">&#9670;&#160;</a></span>hash()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">uint64_t gridfire::policy::MultiReactionChainPolicy::hash </td>
+          <td>(</td>
+          <td class="paramtype">uint64_t&#160;</td>
+          <td class="paramname"><em>seed</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Computes a hash value for the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a>. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">seed</td><td>the seed value for the hash computation. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>uint64_t the computed hash value.</dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line">uint64_t h = multi.hash(0);</div>
+<div class="line">std::cout &lt;&lt; <span class="stringliteral">&quot;Policy hash: &quot;</span> &lt;&lt; h &lt;&lt; std::endl;</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a5d1b5640d654f49399145f912e77c19b">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="ac21f837d0d452d32588451f48d5482e6" name="ac21f837d0d452d32588451f48d5482e6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac21f837d0d452d32588451f48d5482e6">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::policy::MultiReactionChainPolicy::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Returns the name of the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a>. </p>
+<dl class="section return"><dt>Returns</dt><dd>std::string the name of the policy.</dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line">std::string n = multi.name();</div>
+<div class="line">std::cout &lt;&lt; <span class="stringliteral">&quot;Using policy: &quot;</span> &lt;&lt; n &lt;&lt; std::endl;</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a41758d921a2d7e83f446aa4fec00d598">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+<p>Reimplemented in <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html#a2e818c9a269bc859b01985fea8423ac0">gridfire::policy::ProtonProtonChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="aa36844fe4417617175d31124e541da50" name="aa36844fe4417617175d31124e541da50"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa36844fe4417617175d31124e541da50">&#9670;&#160;</a></span>operator!=()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::policy::MultiReactionChainPolicy::operator!= </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Inequality comparison operator. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>the other <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> to compare against. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if the policies are not equal, false otherwise.</dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keywordtype">bool</span> not_equal = (multi1 != multi2);</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac19e354a8bcd28f60783b70d8a761030">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="abc3ed7c255b3e6c06e292aee8ef7f46d" name="abc3ed7c255b3e6c06e292aee8ef7f46d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abc3ed7c255b3e6c06e292aee8ef7f46d">&#9670;&#160;</a></span>operator==()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::policy::MultiReactionChainPolicy::operator== </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Equality comparison operator. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>the other <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> to compare against. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if the policies are equal, false otherwise.</dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keywordtype">bool</span> equal = (multi1 == multi2);</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a30420a3881779c822ab06c0405ea7b28">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a84fcdc2adab96284d850f8dd43315278" name="a84fcdc2adab96284d850f8dd43315278"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a84fcdc2adab96284d850f8dd43315278">&#9670;&#160;</a></span>size()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::policy::MultiReactionChainPolicy::size </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Returns the number of child <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances. </p>
+<dl class="section return"><dt>Returns</dt><dd>size_t the number of child chain policies.</dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keywordtype">size_t</span> n = multi.size();</div>
+<div class="line">std::cout &lt;&lt; <span class="stringliteral">&quot;Multi chain has &quot;</span> &lt;&lt; n &lt;&lt; <span class="stringliteral">&quot; child policies\n&quot;</span>;</div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a8ef92bf3b66d77f8141bb6010e909e99" name="a8ef92bf3b66d77f8141bb6010e909e99"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8ef92bf3b66d77f8141bb6010e909e99">&#9670;&#160;</a></span>m_chain_policies</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;std::unique_ptr&lt;<a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a>&gt; &gt; gridfire::policy::MultiReactionChainPolicy::m_chain_policies {}</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Child chain policies. </p>
+
+</div>
+</div>
+<a id="adaf3fa4b8cd0fde5994f54494701c32d" name="adaf3fa4b8cd0fde5994f54494701c32d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adaf3fa4b8cd0fde5994f54494701c32d">&#9670;&#160;</a></span>m_reactions</h2>
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+<p>Combined reactions from all child policies. </p>
+
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+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/policy/<a class="el" href="policy__logical_8h.html">policy_logical.h</a></li>
+<li>src/lib/policy/<a class="el" href="policy__logical_8cpp.html">policy_logical.cpp</a></li>
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
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+<!-- Generated by Doxygen 1.9.8 -->
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::policy::NetworkPolicy Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html">gridfire::policy::NetworkPolicy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a13cd74c967592392b01d8fe9a5b34d88">construct</a>()=0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html">gridfire::policy::NetworkPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a92891fe37b8684fe9f1c5958674de2d5">get_engine_stack</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html">gridfire::policy::NetworkPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#aac63625678d287d0ca36c98f51e86dd2">get_engine_types_stack</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html">gridfire::policy::NetworkPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a1c395eb83b0bcf728db230e7772aabcf">get_partition_function</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html">gridfire::policy::NetworkPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#aa33fcee020f5acd8e14aadaf3758ad2f">get_seed_reactions</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html">gridfire::policy::NetworkPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#afb599d76b423f7a39b322c967302b49b">get_seed_species</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html">gridfire::policy::NetworkPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a3d0f2aee8ead71da4d421fb659fb30f7">get_status</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html">gridfire::policy::NetworkPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#aa59c1baf7077a5d35d45ff753b32a565">name</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html">gridfire::policy::NetworkPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a0d32c22a2d3794c328e8dd24d2cda2be">~NetworkPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html">gridfire::policy::NetworkPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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diff --git a/docs/html/classgridfire_1_1policy_1_1NetworkPolicy.html b/docs/html/classgridfire_1_1policy_1_1NetworkPolicy.html
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+<title>GridFire: gridfire::policy::NetworkPolicy Class Reference</title>
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+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
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+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
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+ </tbody>
+</table>
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+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
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+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1policy_1_1NetworkPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::NetworkPolicy Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Abstract interface for policies that construct DynamicEngine networks from a seed composition.  
+ <a href="classgridfire_1_1policy_1_1NetworkPolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;policy_abstract.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::NetworkPolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1NetworkPolicy__inherit__graph.svg" width="384" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a0d32c22a2d3794c328e8dd24d2cda2be" id="r_a0d32c22a2d3794c328e8dd24d2cda2be"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a0d32c22a2d3794c328e8dd24d2cda2be">~NetworkPolicy</a> ()=default</td></tr>
+<tr class="separator:a0d32c22a2d3794c328e8dd24d2cda2be"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa59c1baf7077a5d35d45ff753b32a565" id="r_aa59c1baf7077a5d35d45ff753b32a565"><td class="memItemLeft" align="right" valign="top">virtual std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#aa59c1baf7077a5d35d45ff753b32a565">name</a> () const =0</td></tr>
+<tr class="memdesc:aa59c1baf7077a5d35d45ff753b32a565"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable name for the policy.  <br /></td></tr>
+<tr class="separator:aa59c1baf7077a5d35d45ff753b32a565"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afb599d76b423f7a39b322c967302b49b" id="r_afb599d76b423f7a39b322c967302b49b"><td class="memItemLeft" align="right" valign="top">virtual const std::set&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#afb599d76b423f7a39b322c967302b49b">get_seed_species</a> () const =0</td></tr>
+<tr class="memdesc:afb599d76b423f7a39b322c967302b49b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the seed species the policy requires to initialize the network.  <br /></td></tr>
+<tr class="separator:afb599d76b423f7a39b322c967302b49b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa33fcee020f5acd8e14aadaf3758ad2f" id="r_aa33fcee020f5acd8e14aadaf3758ad2f"><td class="memItemLeft" align="right" valign="top">virtual const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#aa33fcee020f5acd8e14aadaf3758ad2f">get_seed_reactions</a> () const =0</td></tr>
+<tr class="memdesc:aa33fcee020f5acd8e14aadaf3758ad2f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the set of seed reactions the policy requires.  <br /></td></tr>
+<tr class="separator:aa33fcee020f5acd8e14aadaf3758ad2f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a13cd74c967592392b01d8fe9a5b34d88" id="r_a13cd74c967592392b01d8fe9a5b34d88"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a13cd74c967592392b01d8fe9a5b34d88">construct</a> ()=0</td></tr>
+<tr class="memdesc:a13cd74c967592392b01d8fe9a5b34d88"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct and return a DynamicEngine instance (or engine view stack) satisfying the policy.  <br /></td></tr>
+<tr class="separator:a13cd74c967592392b01d8fe9a5b34d88"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3d0f2aee8ead71da4d421fb659fb30f7" id="r_a3d0f2aee8ead71da4d421fb659fb30f7"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109">NetworkPolicyStatus</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a3d0f2aee8ead71da4d421fb659fb30f7">get_status</a> () const =0</td></tr>
+<tr class="memdesc:a3d0f2aee8ead71da4d421fb659fb30f7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the current verification/construction status of the policy.  <br /></td></tr>
+<tr class="separator:a3d0f2aee8ead71da4d421fb659fb30f7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a92891fe37b8684fe9f1c5958674de2d5" id="r_a92891fe37b8684fe9f1c5958674de2d5"><td class="memItemLeft" align="right" valign="top">virtual const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a> &gt; &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a92891fe37b8684fe9f1c5958674de2d5">get_engine_stack</a> () const =0</td></tr>
+<tr class="separator:a92891fe37b8684fe9f1c5958674de2d5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aac63625678d287d0ca36c98f51e86dd2" id="r_aac63625678d287d0ca36c98f51e86dd2"><td class="memItemLeft" align="right" valign="top">virtual std::vector&lt; <a class="el" href="namespacegridfire_1_1engine.html#a5387db1ec0b039955487fbc4c0034854">engine::EngineTypes</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#aac63625678d287d0ca36c98f51e86dd2">get_engine_types_stack</a> () const =0</td></tr>
+<tr class="separator:aac63625678d287d0ca36c98f51e86dd2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1c395eb83b0bcf728db230e7772aabcf" id="r_a1c395eb83b0bcf728db230e7772aabcf"><td class="memItemLeft" align="right" valign="top">virtual const std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">partition::PartitionFunction</a> &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a1c395eb83b0bcf728db230e7772aabcf">get_partition_function</a> () const =0</td></tr>
+<tr class="separator:a1c395eb83b0bcf728db230e7772aabcf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Abstract interface for policies that construct DynamicEngine networks from a seed composition. </p>
+<p>A <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html" title="Abstract interface for policies that construct DynamicEngine networks from a seed composition.">NetworkPolicy</a> provides three main pieces of information:</p><ul>
+<li>A name identifying the policy.</li>
+<li>A set of seed species and seed reactions required to initialize the network.</li>
+<li>A constructor method that returns a fully constructed DynamicEngine (or view stack) built to satisfy the policy.</li>
+</ul>
+<p>Concrete implementations include <code><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html" title="A NetworkPolicy for building reaction networks suitable for low-mass main-sequence stars.">MainSequencePolicy</a></code> (see <code><a class="el" href="stellar__policy_8h.html" title="High-level concrete NetworkPolicy for specific stellar environments.">stellar_policy.h</a></code>) and may throw policy-specific exceptions during construction (for example when required reactions or species are missing).</p>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="comment">// Example usage (see tests/graphnet_sandbox/main.cpp for a complete example):</span></div>
+<div class="line"><span class="comment">// fourdst::composition::Composition comp = prepared composition</span></div>
+<div class="line"><span class="comment">// gridfire::policy::LowMassMainSequencePolicy policy(comp);</span></div>
+<div class="line"><span class="comment">// // construct() returns a reference to a DynamicEngine (could be a view stack)</span></div>
+<div class="line"><span class="comment">// DynamicEngine &amp;engine = policy.construct();</span></div>
+<div class="line"><span class="comment">// // engine can now be passed to a solver (e.g. CVODESolverStrategy)</span></div>
+</div><!-- fragment --> </dd></dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a0d32c22a2d3794c328e8dd24d2cda2be" name="a0d32c22a2d3794c328e8dd24d2cda2be"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0d32c22a2d3794c328e8dd24d2cda2be">&#9670;&#160;</a></span>~NetworkPolicy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual gridfire::policy::NetworkPolicy::~NetworkPolicy </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a13cd74c967592392b01d8fe9a5b34d88" name="a13cd74c967592392b01d8fe9a5b34d88"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a13cd74c967592392b01d8fe9a5b34d88">&#9670;&#160;</a></span>construct()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a> &amp; gridfire::policy::NetworkPolicy::construct </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct and return a DynamicEngine instance (or engine view stack) satisfying the policy. </p>
+<p>Implementations typically build one or more engine layers (GraphEngine, MultiscalePartitioningEngineView, AdaptiveEngineView, etc.) and return a reference to the top-most DynamicEngine. The storage lifetime of the returned reference is implementation-defined (usually owned by the policy instance).</p>
+<dl class="section return"><dt>Returns</dt><dd>DynamicEngine&amp; reference to a running/constructed engine ready for solver consumption.</dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname"><a class="el" href="classgridfire_1_1exceptions_1_1MissingKeyReactionError.html" title="Exception thrown when a constructed network fails to include a key reaction required by the policy.">gridfire::exceptions::MissingKeyReactionError</a></td><td>if required reactions are not present in the constructed network (see <code><a class="el" href="error__policy_8h.html" title="Defines custom exception types related to network policy construction and verification.">gridfire/exceptions/error_policy.h</a></code>). </td></tr>
+    <tr><td class="paramname"><a class="el" href="classgridfire_1_1exceptions_1_1MissingSeedSpeciesError.html" title="Exception thrown when a required seed species is not found in the initial composition.">gridfire::exceptions::MissingSeedSpeciesError</a></td><td>if required seed species are missing from the initializing composition. </td></tr>
+    <tr><td class="paramname"><a class="el" href="classgridfire_1_1exceptions_1_1PolicyError.html" title="Base class for all exceptions related to network policy operations.">gridfire::exceptions::PolicyError</a></td><td>for other construction/verification failures.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line">DynamicEngine &amp;engine = policy.construct();</div>
+<div class="line"><a class="code hl_class" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">solver::CVODESolverStrategy</a> solver(engine);</div>
+<div class="line"><a class="code hl_struct" href="structgridfire_1_1NetOut.html">NetOut</a> out = solver.evaluate(netIn, <span class="keyword">true</span>);</div>
+<div class="ttc" id="aclassgridfire_1_1solver_1_1CVODESolverStrategy_html"><div class="ttname"><a href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></div><div class="ttdoc">Stiff ODE integrator backed by SUNDIALS CVODE (BDF) for network + energy.</div><div class="ttdef"><b>Definition</b> CVODE_solver_strategy.h:81</div></div>
+<div class="ttc" id="astructgridfire_1_1NetOut_html"><div class="ttname"><a href="structgridfire_1_1NetOut.html">gridfire::NetOut</a></div><div class="ttdef"><b>Definition</b> types.h:37</div></div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#aa9b4e39dacada73756bfd78885da60bd">gridfire::policy::MainSequencePolicy</a>, and <a class="el" href="classPyNetworkPolicy.html#a6871d8aae79db9b784d40b05225b3445">PyNetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a92891fe37b8684fe9f1c5958674de2d5" name="a92891fe37b8684fe9f1c5958674de2d5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a92891fe37b8684fe9f1c5958674de2d5">&#9670;&#160;</a></span>get_engine_stack()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a> &gt; &gt; &amp; gridfire::policy::NetworkPolicy::get_engine_stack </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a43724347608826a613f6c65385050186">gridfire::policy::MainSequencePolicy</a>, and <a class="el" href="classPyNetworkPolicy.html#ac640b306cf921c0793a296bd41e8d405">PyNetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="aac63625678d287d0ca36c98f51e86dd2" name="aac63625678d287d0ca36c98f51e86dd2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aac63625678d287d0ca36c98f51e86dd2">&#9670;&#160;</a></span>get_engine_types_stack()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::vector&lt; <a class="el" href="namespacegridfire_1_1engine.html#a5387db1ec0b039955487fbc4c0034854">engine::EngineTypes</a> &gt; gridfire::policy::NetworkPolicy::get_engine_types_stack </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a70c617ea5b13a1cdc62fbfe21963098c">gridfire::policy::MainSequencePolicy</a>, and <a class="el" href="classPyNetworkPolicy.html#a62eed803e30afebbbc074a3bf334524b">PyNetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a1c395eb83b0bcf728db230e7772aabcf" name="a1c395eb83b0bcf728db230e7772aabcf"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1c395eb83b0bcf728db230e7772aabcf">&#9670;&#160;</a></span>get_partition_function()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual const std::unique_ptr&lt; <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html">partition::PartitionFunction</a> &gt; &amp; gridfire::policy::NetworkPolicy::get_partition_function </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a8dbef0e799968af4103e184b6e30c221">gridfire::policy::MainSequencePolicy</a>, and <a class="el" href="classPyNetworkPolicy.html#a86d85c133b7dba16f93e3a084201b931">PyNetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="aa33fcee020f5acd8e14aadaf3758ad2f" name="aa33fcee020f5acd8e14aadaf3758ad2f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa33fcee020f5acd8e14aadaf3758ad2f">&#9670;&#160;</a></span>get_seed_reactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp; gridfire::policy::NetworkPolicy::get_seed_reactions </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Returns the set of seed reactions the policy requires. </p>
+<p>The ReactionSet describes reactions that must be present in the constructed network for the policy to be considered satisfied. Concrete policies often implement their reaction requirements by composing one or more <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances (see <code><a class="el" href="chains_8h.html" title="Concrete implementations of ReactionChainPolicy for key stellar reaction chains.">chains.h</a></code>).</p>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;reactions = policy.get_seed_reactions();</div>
+<div class="line"><span class="comment">// inspect reaction IDs or count</span></div>
+<div class="line">std::cout &lt;&lt; <span class="stringliteral">&quot;Policy requires &quot;</span> &lt;&lt; reactions.<a class="code hl_function" href="classgridfire_1_1reaction_1_1ReactionSet.html#af14cf34d7367cb6a6be5191724c2d4cf">size</a>() &lt;&lt; <span class="stringliteral">&quot; reactions&quot;</span> &lt;&lt; std::endl;</div>
+<div class="ttc" id="aclassgridfire_1_1reaction_1_1ReactionSet_html"><div class="ttname"><a href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></div><div class="ttdef"><b>Definition</b> reaction.h:842</div></div>
+<div class="ttc" id="aclassgridfire_1_1reaction_1_1ReactionSet_html_af14cf34d7367cb6a6be5191724c2d4cf"><div class="ttname"><a href="classgridfire_1_1reaction_1_1ReactionSet.html#af14cf34d7367cb6a6be5191724c2d4cf">gridfire::reaction::ReactionSet::size</a></div><div class="ttdeci">size_t size() const</div><div class="ttdoc">Gets the number of reactions in the set.</div><div class="ttdef"><b>Definition</b> reaction.h:903</div></div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#adcefccb171b339350a9b4a61d89adbbc">gridfire::policy::MainSequencePolicy</a>, and <a class="el" href="classPyNetworkPolicy.html#af0b892e995f58375144bd5559cf2b4c9">PyNetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="afb599d76b423f7a39b322c967302b49b" name="afb599d76b423f7a39b322c967302b49b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afb599d76b423f7a39b322c967302b49b">&#9670;&#160;</a></span>get_seed_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual const std::set&lt; fourdst::atomic::Species &gt; &amp; gridfire::policy::NetworkPolicy::get_seed_species </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Returns the seed species the policy requires to initialize the network. </p>
+<p>The returned set contains atomic species identifiers (fourdst::atomic::Species) which the policy expects to be present in the initial composition used to build the network.</p>
+<p>Implementations should return a copy or an immutable reference to their internal set of required seed species.</p>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keyword">const</span> <span class="keyword">auto</span> seeds = policy.get_seed_species();</div>
+<div class="line"><span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span> &amp;s : seeds) { std::cout &lt;&lt; s.name() &lt;&lt; std::endl; }</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a041b0a99120efdc6abae312c568a9e15">gridfire::policy::MainSequencePolicy</a>, and <a class="el" href="classPyNetworkPolicy.html#a1d685fd5eb346871af5b8ed677dfcf36">PyNetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a3d0f2aee8ead71da4d421fb659fb30f7" name="a3d0f2aee8ead71da4d421fb659fb30f7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3d0f2aee8ead71da4d421fb659fb30f7">&#9670;&#160;</a></span>get_status()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109">NetworkPolicyStatus</a> gridfire::policy::NetworkPolicy::get_status </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Returns the current verification/construction status of the policy. </p>
+<p>The status reports whether the policy has been initialized and whether the constructed network satisfies the policy's key requirements.</p>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><a class="code hl_enumeration" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109">NetworkPolicyStatus</a> s = policy.getStatus();</div>
+<div class="line"><span class="keywordflow">if</span> (s != <a class="code hl_enumvalue" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109aff6473ea13033c0680a084b372f5755e">NetworkPolicyStatus::INITIALIZED_VERIFIED</a>) { <span class="comment">// handle error }</span></div>
+<div class="ttc" id="anamespacegridfire_1_1policy_html_a0f52cd334fb84998d9c68430a41f6109"><div class="ttname"><a href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109">gridfire::policy::NetworkPolicyStatus</a></div><div class="ttdeci">NetworkPolicyStatus</div><div class="ttdoc">Lifecycle/verification status for a NetworkPolicy instance.</div><div class="ttdef"><b>Definition</b> policy_abstract.h:38</div></div>
+<div class="ttc" id="anamespacegridfire_1_1policy_html_a0f52cd334fb84998d9c68430a41f6109aff6473ea13033c0680a084b372f5755e"><div class="ttname"><a href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109aff6473ea13033c0680a084b372f5755e">gridfire::policy::NetworkPolicyStatus::INITIALIZED_VERIFIED</a></div><div class="ttdeci">@ INITIALIZED_VERIFIED</div></div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a1ecfb6ea2e18e8cf55228f80ee5c50ed">gridfire::policy::MainSequencePolicy</a>, and <a class="el" href="classPyNetworkPolicy.html#a8506a1f9c22d47c266abe1519ffb9bc0">PyNetworkPolicy</a>.</p>
+
+</div>
+</div>
+<a id="aa59c1baf7077a5d35d45ff753b32a565" name="aa59c1baf7077a5d35d45ff753b32a565"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa59c1baf7077a5d35d45ff753b32a565">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::string gridfire::policy::NetworkPolicy::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Human-readable name for the policy. </p>
+<dl class="section return"><dt>Returns</dt><dd>a std::string identifying the policy implementation (e.g. "MainSequencePolicy").</dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line">std::string n = policy.name();</div>
+<div class="line">std::cout &lt;&lt; <span class="stringliteral">&quot;Using policy: &quot;</span> &lt;&lt; n &lt;&lt; std::endl;</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a6520ddfead2ba2700e2b1329774b4ff6">gridfire::policy::MainSequencePolicy</a>, and <a class="el" href="classPyNetworkPolicy.html#ac2c1ef3897e6491d5ab03e7342075245">PyNetworkPolicy</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/policy/<a class="el" href="policy__abstract_8h.html">policy_abstract.h</a></li>
+</ul>
+</div><!-- contents -->
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+[
+    [ "~NetworkPolicy", "classgridfire_1_1policy_1_1NetworkPolicy.html#a0d32c22a2d3794c328e8dd24d2cda2be", null ],
+    [ "construct", "classgridfire_1_1policy_1_1NetworkPolicy.html#a13cd74c967592392b01d8fe9a5b34d88", null ],
+    [ "get_engine_stack", "classgridfire_1_1policy_1_1NetworkPolicy.html#a92891fe37b8684fe9f1c5958674de2d5", null ],
+    [ "get_engine_types_stack", "classgridfire_1_1policy_1_1NetworkPolicy.html#aac63625678d287d0ca36c98f51e86dd2", null ],
+    [ "get_partition_function", "classgridfire_1_1policy_1_1NetworkPolicy.html#a1c395eb83b0bcf728db230e7772aabcf", null ],
+    [ "get_seed_reactions", "classgridfire_1_1policy_1_1NetworkPolicy.html#aa33fcee020f5acd8e14aadaf3758ad2f", null ],
+    [ "get_seed_species", "classgridfire_1_1policy_1_1NetworkPolicy.html#afb599d76b423f7a39b322c967302b49b", null ],
+    [ "get_status", "classgridfire_1_1policy_1_1NetworkPolicy.html#a3d0f2aee8ead71da4d421fb659fb30f7", null ],
+    [ "name", "classgridfire_1_1policy_1_1NetworkPolicy.html#aa59c1baf7077a5d35d45ff753b32a565", null ]
+];
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a2317c6351bb1fc07ff0a27cd358b4f73">begin</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a6b340b7bdb8cf9e32f004074b1901815">begin</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab3bbbf21164211a01c5398a0ee281bb2">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a792cf0af8e5c365d0332cd585968dae1">contains</a>(const std::string &amp;id) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a864a00097e80db7b0f3838d696aa9f5d">contains</a>(const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aaa71cb8b9c72af7047c4ae54b8c33915">end</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a8f2f648e161d1935c27729bcd6054187">end</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aeec13e231994234c1ae2b12a0dd7220b">get_chain_policies</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ae689a0dfeb36f85ddc6db5a8dc4f630a">get_reactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ae5ac6534ec96cfcdefcad2f9694efd36">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html#a43d461d976f9cff765db92c05765d0a3">m_chain_policies</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html">gridfire::policy::ProtonProtonChainPolicy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#adaf3fa4b8cd0fde5994f54494701c32d">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab0e3ba293b5e52d595dfa02db4fcbee7">MultiReactionChainPolicy</a>(std::vector&lt; std::unique_ptr&lt; ReactionChainPolicy &gt; &gt; &amp;&amp;chain_policies)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html#a2e818c9a269bc859b01985fea8423ac0">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html">gridfire::policy::ProtonProtonChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aa36844fe4417617175d31124e541da50">operator!=</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#abc3ed7c255b3e6c06e292aee8ef7f46d">operator==</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html#a0700dc96acfae24b242e5556a1bcbf26">ProtonProtonChainPolicy</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html">gridfire::policy::ProtonProtonChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a84fcdc2adab96284d850f8dd43315278">size</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::ProtonProtonChainPolicy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
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+<div class="contents">
+
+<p>Proton-Proton Chain Policy.  
+ <a href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;chains.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::ProtonProtonChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1ProtonProtonChainPolicy__inherit__graph.svg" width="223" height="227"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::policy::ProtonProtonChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1ProtonProtonChainPolicy__coll__graph.svg" width="100%" height="591"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a0700dc96acfae24b242e5556a1bcbf26" id="r_a0700dc96acfae24b242e5556a1bcbf26"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html#a0700dc96acfae24b242e5556a1bcbf26">ProtonProtonChainPolicy</a> ()</td></tr>
+<tr class="separator:a0700dc96acfae24b242e5556a1bcbf26"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2e818c9a269bc859b01985fea8423ac0" id="r_a2e818c9a269bc859b01985fea8423ac0"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html#a2e818c9a269bc859b01985fea8423ac0">name</a> () const override</td></tr>
+<tr class="memdesc:a2e818c9a269bc859b01985fea8423ac0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the name of the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a>.  <br /></td></tr>
+<tr class="separator:a2e818c9a269bc859b01985fea8423ac0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td></tr>
+<tr class="memitem:ab0e3ba293b5e52d595dfa02db4fcbee7 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy" id="r_ab0e3ba293b5e52d595dfa02db4fcbee7"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab0e3ba293b5e52d595dfa02db4fcbee7">MultiReactionChainPolicy</a> (std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; &gt; &amp;&amp;chain_policies)</td></tr>
+<tr class="memdesc:ab0e3ba293b5e52d595dfa02db4fcbee7 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a> from a vector of <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances.  <br /></td></tr>
+<tr class="separator:ab0e3ba293b5e52d595dfa02db4fcbee7 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aeec13e231994234c1ae2b12a0dd7220b inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy" id="r_aeec13e231994234c1ae2b12a0dd7220b"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aeec13e231994234c1ae2b12a0dd7220b">get_chain_policies</a> () const</td></tr>
+<tr class="memdesc:aeec13e231994234c1ae2b12a0dd7220b inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the vector of child <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances.  <br /></td></tr>
+<tr class="separator:aeec13e231994234c1ae2b12a0dd7220b inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae689a0dfeb36f85ddc6db5a8dc4f630a inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy" id="r_ae689a0dfeb36f85ddc6db5a8dc4f630a"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ae689a0dfeb36f85ddc6db5a8dc4f630a">get_reactions</a> () const override</td></tr>
+<tr class="memdesc:ae689a0dfeb36f85ddc6db5a8dc4f630a inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the combined ReactionSet of all child chain policies.  <br /></td></tr>
+<tr class="separator:ae689a0dfeb36f85ddc6db5a8dc4f630a inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a792cf0af8e5c365d0332cd585968dae1 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy" id="r_a792cf0af8e5c365d0332cd585968dae1"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a792cf0af8e5c365d0332cd585968dae1">contains</a> (const std::string &amp;id) const override</td></tr>
+<tr class="memdesc:a792cf0af8e5c365d0332cd585968dae1 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a> contains a reaction by ID.  <br /></td></tr>
+<tr class="separator:a792cf0af8e5c365d0332cd585968dae1 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a864a00097e80db7b0f3838d696aa9f5d inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy" id="r_a864a00097e80db7b0f3838d696aa9f5d"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a864a00097e80db7b0f3838d696aa9f5d">contains</a> (const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;reaction) const override</td></tr>
+<tr class="memdesc:a864a00097e80db7b0f3838d696aa9f5d inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a> contains a specific reaction.  <br /></td></tr>
+<tr class="separator:a864a00097e80db7b0f3838d696aa9f5d inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab3bbbf21164211a01c5398a0ee281bb2 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy" id="r_ab3bbbf21164211a01c5398a0ee281bb2"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab3bbbf21164211a01c5398a0ee281bb2">clone</a> () const override</td></tr>
+<tr class="memdesc:ab3bbbf21164211a01c5398a0ee281bb2 inherit pub_methods_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Creates a deep copy of the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a>.  <br /></td></tr>
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
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+</table><table class="memberdecls">
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+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pro_attribs_classgridfire_1_1policy_1_1MultiReactionChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classgridfire_1_1policy_1_1MultiReactionChainPolicy')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">gridfire::policy::MultiReactionChainPolicy</a></td></tr>
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+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Proton-Proton Chain Policy. </p>
+<p>This class implements the overall Proton-Proton chain of nuclear reactions, combining the Proton-Proton I, II, and III chains. Enforcing this chain in the policy will ensure that all the Proton-Proton reactions are included in the network.</p>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html" title="Proton-Proton I Chain Policy.">ProtonProtonIChainPolicy</a> </dd>
+<dd>
+<a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html" title="Proton-Proton II Chain Policy.">ProtonProtonIIChainPolicy</a> </dd>
+<dd>
+<a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html" title="Proton-Proton III Chain Policy.">ProtonProtonIIIChainPolicy</a> </dd></dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a0700dc96acfae24b242e5556a1bcbf26" name="a0700dc96acfae24b242e5556a1bcbf26"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0700dc96acfae24b242e5556a1bcbf26">&#9670;&#160;</a></span>ProtonProtonChainPolicy()</h2>
+
+<div class="memitem">
+<div class="memproto">
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+        <tr>
+          <td class="memname">gridfire::policy::ProtonProtonChainPolicy::ProtonProtonChainPolicy </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
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+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a2e818c9a269bc859b01985fea8423ac0" name="a2e818c9a269bc859b01985fea8423ac0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2e818c9a269bc859b01985fea8423ac0">&#9670;&#160;</a></span>name()</h2>
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+      <table class="memname">
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+          <td class="memname">std::string gridfire::policy::ProtonProtonChainPolicy::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
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+<p>Returns the name of the <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html" title="A ReactionChainPolicy composed of multiple child ReactionChainPolicy instances.">MultiReactionChainPolicy</a>. </p>
+<dl class="section return"><dt>Returns</dt><dd>std::string the name of the policy.</dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line">std::string n = multi.name();</div>
+<div class="line">std::cout &lt;&lt; <span class="stringliteral">&quot;Using policy: &quot;</span> &lt;&lt; n &lt;&lt; std::endl;</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Reimplemented from <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ac21f837d0d452d32588451f48d5482e6">gridfire::policy::MultiReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a43d461d976f9cff765db92c05765d0a3" name="a43d461d976f9cff765db92c05765d0a3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a43d461d976f9cff765db92c05765d0a3">&#9670;&#160;</a></span>m_chain_policies</h2>
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+        </tr>
+      </table>
+  </td>
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+<li>src/lib/policy/<a class="el" href="chains_8cpp.html">chains.cpp</a></li>
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+  <div class="headertitle"><div class="title">gridfire::policy::ProtonProtonIChainPolicy Member List</div></div>
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+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html">gridfire::policy::ProtonProtonIChainPolicy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html#affd234a60ba31decca25b3367c7ede5e">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html">gridfire::policy::ProtonProtonIChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8869287d36b3ff143e7f84799ef35dd9">contains</a>(const std::string &amp;id) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8984d58dee6865d4bd98aedf31bb445e">contains</a>(const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ae93a5a2d753ddd32f2a4a5a750ef44b4">get_reactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a0b2c469f8e17ccba0f45632b19395731">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a2e10b0f832b1addbaa90c14363732c7a">is_active</a>(double T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a69882ddefb0f27b13433616411a1484a">m_reactionIDs</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ad9cd9e4826f60e066feda2ffc5d37338">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a22d731c0a0bf804f7c8b0e22cf13b688">m_tempRange</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html#ab9542fd71e87159216cdd51501b6d1d3">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html">gridfire::policy::ProtonProtonIChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950">operator!=</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">operator==</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html#a2721f00e9edefeb3d4bfc02a37777a47">ProtonProtonIChainPolicy</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html">gridfire::policy::ProtonProtonIChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a07f5a057d382874ec641b3494338dc65">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ab7f64e19d0ce405aba55b518ed301b92">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a4886c44a082151ebf7b75594dbc6856b">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9, std::optional&lt; double &gt; maxT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a74b59b1cb02703834373fb7a3d09614e">~TemperatureDependentChainPolicy</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::ProtonProtonIChainPolicy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Proton-Proton I Chain Policy.  
+ <a href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;chains.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::ProtonProtonIChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy__inherit__graph.svg" width="215" height="227"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::policy::ProtonProtonIChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy__coll__graph.svg" width="100%" height="524"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a2721f00e9edefeb3d4bfc02a37777a47" id="r_a2721f00e9edefeb3d4bfc02a37777a47"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html#a2721f00e9edefeb3d4bfc02a37777a47">ProtonProtonIChainPolicy</a> ()</td></tr>
+<tr class="separator:a2721f00e9edefeb3d4bfc02a37777a47"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:affd234a60ba31decca25b3367c7ede5e" id="r_affd234a60ba31decca25b3367c7ede5e"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html#affd234a60ba31decca25b3367c7ede5e">clone</a> () const override</td></tr>
+<tr class="separator:affd234a60ba31decca25b3367c7ede5e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab9542fd71e87159216cdd51501b6d1d3" id="r_ab9542fd71e87159216cdd51501b6d1d3"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html#ab9542fd71e87159216cdd51501b6d1d3">name</a> () const override</td></tr>
+<tr class="separator:ab9542fd71e87159216cdd51501b6d1d3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td></tr>
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+<tr class="separator:ae93a5a2d753ddd32f2a4a5a750ef44b4 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a8869287d36b3ff143e7f84799ef35dd9 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if a reaction or reaction ID is part of the chain.  <br /></td></tr>
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+<tr class="memitem:add9c0230ad7c3e6e2cb182bdb4849c52 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_add9c0230ad7c3e6e2cb182bdb4849c52"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">operator==</a> (const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;other) const override</td></tr>
+<tr class="memdesc:add9c0230ad7c3e6e2cb182bdb4849c52 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Equality operator.  <br /></td></tr>
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+<tr class="memitem:a264dc45c3410ab3ec49a340633aa5950 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a264dc45c3410ab3ec49a340633aa5950"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950">operator!=</a> (const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;other) const override</td></tr>
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+<tr class="memitem:a2e10b0f832b1addbaa90c14363732c7a inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a2e10b0f832b1addbaa90c14363732c7a"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a2e10b0f832b1addbaa90c14363732c7a">is_active</a> (double T9) const</td></tr>
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+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Proton-Proton I Chain Policy. </p>
+<p>This class implements the Proton-Proton I chain of nuclear reactions. This chain's minimum temperature is set to T9=0.001 (or 1e6K). This chain includes reactions:</p><ul>
+<li>p(p,e+)d</li>
+<li>d(p,g)he3</li>
+<li>he3(he3,2p)he4 </li>
+</ul>
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+          <td class="memname">gridfire::policy::ProtonProtonIChainPolicy::ProtonProtonIChainPolicy </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+<p>Specific Implementations * </p>
+
+</div>
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+<h2 class="groupheader">Member Function Documentation</h2>
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+          <td>(</td>
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+<h2 class="memtitle"><span class="permalink"><a href="#ab9542fd71e87159216cdd51501b6d1d3">&#9670;&#160;</a></span>name()</h2>
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+<hr/>The documentation for this class was generated from the following files:<ul>
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+<table cellspacing="0" cellpadding="0">
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
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+<!-- Generated by Doxygen 1.9.8 -->
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+  <div class="headertitle"><div class="title">gridfire::policy::ProtonProtonIIChainPolicy Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html">gridfire::policy::ProtonProtonIIChainPolicy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html#ad70b081f8623fad207050c0f81f6a457">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html">gridfire::policy::ProtonProtonIIChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8869287d36b3ff143e7f84799ef35dd9">contains</a>(const std::string &amp;id) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8984d58dee6865d4bd98aedf31bb445e">contains</a>(const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ae93a5a2d753ddd32f2a4a5a750ef44b4">get_reactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a0b2c469f8e17ccba0f45632b19395731">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a2e10b0f832b1addbaa90c14363732c7a">is_active</a>(double T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a69882ddefb0f27b13433616411a1484a">m_reactionIDs</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ad9cd9e4826f60e066feda2ffc5d37338">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a22d731c0a0bf804f7c8b0e22cf13b688">m_tempRange</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html#a2782c6abea3596cf566a246239b96f80">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html">gridfire::policy::ProtonProtonIIChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950">operator!=</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">operator==</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html#a1b8c1ebf376a8ddcafb89d6cda5d5989">ProtonProtonIIChainPolicy</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html">gridfire::policy::ProtonProtonIIChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a07f5a057d382874ec641b3494338dc65">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ab7f64e19d0ce405aba55b518ed301b92">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a4886c44a082151ebf7b75594dbc6856b">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9, std::optional&lt; double &gt; maxT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a74b59b1cb02703834373fb7a3d09614e">~TemperatureDependentChainPolicy</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
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diff --git a/docs/html/classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html b/docs/html/classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html
new file mode 100644
index 00000000..1442242f
--- /dev/null
+++ b/docs/html/classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html
@@ -0,0 +1,272 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+<meta name="generator" content="Doxygen 1.9.8"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::policy::ProtonProtonIIChainPolicy Class Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
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+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.9.8 -->
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+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
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+<div id="SRIndex">
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+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::ProtonProtonIIChainPolicy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Proton-Proton II Chain Policy.  
+ <a href="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;chains.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::ProtonProtonIIChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy__inherit__graph.svg" width="215" height="227"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::policy::ProtonProtonIIChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy__coll__graph.svg" width="100%" height="524"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
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+<tr class="memitem:add9c0230ad7c3e6e2cb182bdb4849c52 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_add9c0230ad7c3e6e2cb182bdb4849c52"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">operator==</a> (const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;other) const override</td></tr>
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+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td></tr>
+<tr class="memitem:aa3e6c1e4844fe788aeb08d272070ae13 inherit pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy" id="r_aa3e6c1e4844fe788aeb08d272070ae13"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a> ()=default</td></tr>
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+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td></tr>
+<tr class="memitem:a22d731c0a0bf804f7c8b0e22cf13b688 inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a22d731c0a0bf804f7c8b0e22cf13b688"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1policy_1_1TemperatureDependentChainPolicy_1_1ActiveTempRange.html">ActiveTempRange</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a22d731c0a0bf804f7c8b0e22cf13b688">m_tempRange</a></td></tr>
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+<tr class="memitem:a69882ddefb0f27b13433616411a1484a inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a69882ddefb0f27b13433616411a1484a"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::string &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a69882ddefb0f27b13433616411a1484a">m_reactionIDs</a></td></tr>
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+<tr class="separator:a69882ddefb0f27b13433616411a1484a inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad9cd9e4826f60e066feda2ffc5d37338 inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_ad9cd9e4826f60e066feda2ffc5d37338"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ad9cd9e4826f60e066feda2ffc5d37338">m_reactions</a></td></tr>
+<tr class="memdesc:ad9cd9e4826f60e066feda2ffc5d37338 inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of reactions that comprise the chain.  <br /></td></tr>
+<tr class="separator:ad9cd9e4826f60e066feda2ffc5d37338 inherit pro_attribs_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Proton-Proton II Chain Policy. </p>
+<p>This class implements the Proton-Proton II chain of nuclear reactions. This chain's minimum temperature is set to T9=0.001 (or 1e6K). This chain includes reactions:</p><ul>
+<li>p(p,e+)d</li>
+<li>d(p,g)he3</li>
+<li>he4(he3,g)be7</li>
+<li>be7(e-,)li7</li>
+<li>li7(p,a)he4 </li>
+</ul>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a1b8c1ebf376a8ddcafb89d6cda5d5989" name="a1b8c1ebf376a8ddcafb89d6cda5d5989"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1b8c1ebf376a8ddcafb89d6cda5d5989">&#9670;&#160;</a></span>ProtonProtonIIChainPolicy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::policy::ProtonProtonIIChainPolicy::ProtonProtonIIChainPolicy </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ad70b081f8623fad207050c0f81f6a457" name="ad70b081f8623fad207050c0f81f6a457"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad70b081f8623fad207050c0f81f6a457">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; gridfire::policy::ProtonProtonIIChainPolicy::clone </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac24ff49b7715ad3eefea4bed1bf23686">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a2782c6abea3596cf566a246239b96f80" name="a2782c6abea3596cf566a246239b96f80"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2782c6abea3596cf566a246239b96f80">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::policy::ProtonProtonIIChainPolicy::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a41758d921a2d7e83f446aa4fec00d598">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/policy/<a class="el" href="chains_8h.html">chains.h</a></li>
+<li>src/lib/policy/<a class="el" href="chains_8cpp.html">chains.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
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+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html">gridfire::policy::ProtonProtonIIIChainPolicy</a>, including all inherited members.</p>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html#ac84ab054fc0f600f783ea3282d6fd4f6">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html">gridfire::policy::ProtonProtonIIIChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8869287d36b3ff143e7f84799ef35dd9">contains</a>(const std::string &amp;id) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8984d58dee6865d4bd98aedf31bb445e">contains</a>(const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ae93a5a2d753ddd32f2a4a5a750ef44b4">get_reactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a0b2c469f8e17ccba0f45632b19395731">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a2e10b0f832b1addbaa90c14363732c7a">is_active</a>(double T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a69882ddefb0f27b13433616411a1484a">m_reactionIDs</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ad9cd9e4826f60e066feda2ffc5d37338">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a22d731c0a0bf804f7c8b0e22cf13b688">m_tempRange</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html#a06d103e970b19c9a40cbae8d52ef0d0c">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html">gridfire::policy::ProtonProtonIIIChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950">operator!=</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">operator==</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html#a80008d679d5084e6990da37b8e5784ac">ProtonProtonIIIChainPolicy</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html">gridfire::policy::ProtonProtonIIIChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a07f5a057d382874ec641b3494338dc65">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ab7f64e19d0ce405aba55b518ed301b92">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a4886c44a082151ebf7b75594dbc6856b">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9, std::optional&lt; double &gt; maxT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a74b59b1cb02703834373fb7a3d09614e">~TemperatureDependentChainPolicy</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
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+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::ProtonProtonIIIChainPolicy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Proton-Proton III Chain Policy.  
+ <a href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;chains.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::ProtonProtonIIIChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy__inherit__graph.svg" width="215" height="227"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::policy::ProtonProtonIIIChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy__coll__graph.svg" width="100%" height="524"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a80008d679d5084e6990da37b8e5784ac" id="r_a80008d679d5084e6990da37b8e5784ac"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html#a80008d679d5084e6990da37b8e5784ac">ProtonProtonIIIChainPolicy</a> ()</td></tr>
+<tr class="separator:a80008d679d5084e6990da37b8e5784ac"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac84ab054fc0f600f783ea3282d6fd4f6" id="r_ac84ab054fc0f600f783ea3282d6fd4f6"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html#ac84ab054fc0f600f783ea3282d6fd4f6">clone</a> () const override</td></tr>
+<tr class="separator:ac84ab054fc0f600f783ea3282d6fd4f6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a06d103e970b19c9a40cbae8d52ef0d0c" id="r_a06d103e970b19c9a40cbae8d52ef0d0c"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html#a06d103e970b19c9a40cbae8d52ef0d0c">name</a> () const override</td></tr>
+<tr class="separator:a06d103e970b19c9a40cbae8d52ef0d0c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td></tr>
+<tr class="memitem:a07f5a057d382874ec641b3494338dc65 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a07f5a057d382874ec641b3494338dc65"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a07f5a057d382874ec641b3494338dc65">TemperatureDependentChainPolicy</a> (const std::vector&lt; std::string &gt; &amp;reactionIDs)</td></tr>
+<tr class="memdesc:a07f5a057d382874ec641b3494338dc65 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a new Temperature Dependent Chain Policy object.  <br /></td></tr>
+<tr class="separator:a07f5a057d382874ec641b3494338dc65 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab7f64e19d0ce405aba55b518ed301b92 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_ab7f64e19d0ce405aba55b518ed301b92"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ab7f64e19d0ce405aba55b518ed301b92">TemperatureDependentChainPolicy</a> (const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9)</td></tr>
+<tr class="memdesc:ab7f64e19d0ce405aba55b518ed301b92 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a new Temperature Dependent Chain Policy object.  <br /></td></tr>
+<tr class="separator:ab7f64e19d0ce405aba55b518ed301b92 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4886c44a082151ebf7b75594dbc6856b inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a4886c44a082151ebf7b75594dbc6856b"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a4886c44a082151ebf7b75594dbc6856b">TemperatureDependentChainPolicy</a> (const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9, std::optional&lt; double &gt; maxT9)</td></tr>
+<tr class="memdesc:a4886c44a082151ebf7b75594dbc6856b inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a new Temperature Dependent Chain Policy object.  <br /></td></tr>
+<tr class="separator:a4886c44a082151ebf7b75594dbc6856b inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a74b59b1cb02703834373fb7a3d09614e inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a74b59b1cb02703834373fb7a3d09614e"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a74b59b1cb02703834373fb7a3d09614e">~TemperatureDependentChainPolicy</a> () override=default</td></tr>
+<tr class="memdesc:a74b59b1cb02703834373fb7a3d09614e inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:a74b59b1cb02703834373fb7a3d09614e inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae93a5a2d753ddd32f2a4a5a750ef44b4 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_ae93a5a2d753ddd32f2a4a5a750ef44b4"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ae93a5a2d753ddd32f2a4a5a750ef44b4">get_reactions</a> () const override</td></tr>
+<tr class="memdesc:ae93a5a2d753ddd32f2a4a5a750ef44b4 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the reactions that comprise the chain.  <br /></td></tr>
+<tr class="separator:ae93a5a2d753ddd32f2a4a5a750ef44b4 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8869287d36b3ff143e7f84799ef35dd9 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a8869287d36b3ff143e7f84799ef35dd9"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8869287d36b3ff143e7f84799ef35dd9">contains</a> (const std::string &amp;id) const override</td></tr>
+<tr class="memdesc:a8869287d36b3ff143e7f84799ef35dd9 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if a reaction or reaction ID is part of the chain.  <br /></td></tr>
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+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Proton-Proton III Chain Policy. </p>
+<p>This class implements the Proton-Proton III chain of nuclear reactions. This chain's minimum temperature is set to T9=0.001 (or 1e6K). This chain includes reactions:</p><ul>
+<li>p(p,e+)d</li>
+<li>d(p,g)he3</li>
+<li>he4(he3,g)be7</li>
+<li>be7(p,g)b8</li>
+<li>b8(,e+ a)he4 </li>
+</ul>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a80008d679d5084e6990da37b8e5784ac" name="a80008d679d5084e6990da37b8e5784ac"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a80008d679d5084e6990da37b8e5784ac">&#9670;&#160;</a></span>ProtonProtonIIIChainPolicy()</h2>
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+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
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+          <td class="memname">gridfire::policy::ProtonProtonIIIChainPolicy::ProtonProtonIIIChainPolicy </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ac84ab054fc0f600f783ea3282d6fd4f6" name="ac84ab054fc0f600f783ea3282d6fd4f6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac84ab054fc0f600f783ea3282d6fd4f6">&#9670;&#160;</a></span>clone()</h2>
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+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; gridfire::policy::ProtonProtonIIIChainPolicy::clone </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
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+      </table>
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+  </tr>
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+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac24ff49b7715ad3eefea4bed1bf23686">gridfire::policy::ReactionChainPolicy</a>.</p>
+
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+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#a06d103e970b19c9a40cbae8d52ef0d0c">&#9670;&#160;</a></span>name()</h2>
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+          <td class="memname">std::string gridfire::policy::ProtonProtonIIIChainPolicy::name </td>
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+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/policy/<a class="el" href="chains_8h.html">chains.h</a></li>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::policy::ReactionChainPolicy Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a>, including all inherited members.</p>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac24ff49b7715ad3eefea4bed1bf23686">clone</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a0c9a42646920ac02c8d1e63dfe6f9461">contains</a>(const std::string &amp;id) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a68239737ada169238251f1994680fc7e">contains</a>(const reaction::Reaction &amp;reaction) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ad8bccf78e7fc99d08387aec5015e8849">get_reactions</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a5d1b5640d654f49399145f912e77c19b">hash</a>(uint64_t seed) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a41758d921a2d7e83f446aa4fec00d598">name</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac19e354a8bcd28f60783b70d8a761030">operator!=</a>(const ReactionChainPolicy &amp;other) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a264e0d1d13c7d4d5f05bdda5d5ada5c0">operator&lt;&lt;</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a30420a3881779c822ab06c0405ea7b28">operator==</a>(const ReactionChainPolicy &amp;other) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/classgridfire_1_1policy_1_1ReactionChainPolicy.html b/docs/html/classgridfire_1_1policy_1_1ReactionChainPolicy.html
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+<title>GridFire: gridfire::policy::ReactionChainPolicy Class Reference</title>
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="SRStatus" id="NoMatches">No Matches</div>
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+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="classgridfire_1_1policy_1_1ReactionChainPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::ReactionChainPolicy Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Abstract interface encapsulating a set of reactions representing a single chain or pathway.  
+ <a href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;policy_abstract.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::ReactionChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1ReactionChainPolicy__inherit__graph.svg" width="100%" height="600"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:aa3e6c1e4844fe788aeb08d272070ae13" id="r_aa3e6c1e4844fe788aeb08d272070ae13"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a> ()=default</td></tr>
+<tr class="separator:aa3e6c1e4844fe788aeb08d272070ae13"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad8bccf78e7fc99d08387aec5015e8849" id="r_ad8bccf78e7fc99d08387aec5015e8849"><td class="memItemLeft" align="right" valign="top">virtual const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ad8bccf78e7fc99d08387aec5015e8849">get_reactions</a> () const =0</td></tr>
+<tr class="memdesc:ad8bccf78e7fc99d08387aec5015e8849"><td class="mdescLeft">&#160;</td><td class="mdescRight">Returns the ReactionSet describing this chain.  <br /></td></tr>
+<tr class="separator:ad8bccf78e7fc99d08387aec5015e8849"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0c9a42646920ac02c8d1e63dfe6f9461" id="r_a0c9a42646920ac02c8d1e63dfe6f9461"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a0c9a42646920ac02c8d1e63dfe6f9461">contains</a> (const std::string &amp;id) const =0</td></tr>
+<tr class="separator:a0c9a42646920ac02c8d1e63dfe6f9461"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a68239737ada169238251f1994680fc7e" id="r_a68239737ada169238251f1994680fc7e"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a68239737ada169238251f1994680fc7e">contains</a> (const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;reaction) const =0</td></tr>
+<tr class="separator:a68239737ada169238251f1994680fc7e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac24ff49b7715ad3eefea4bed1bf23686" id="r_ac24ff49b7715ad3eefea4bed1bf23686"><td class="memItemLeft" align="right" valign="top">virtual std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac24ff49b7715ad3eefea4bed1bf23686">clone</a> () const =0</td></tr>
+<tr class="separator:ac24ff49b7715ad3eefea4bed1bf23686"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a41758d921a2d7e83f446aa4fec00d598" id="r_a41758d921a2d7e83f446aa4fec00d598"><td class="memItemLeft" align="right" valign="top">virtual std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a41758d921a2d7e83f446aa4fec00d598">name</a> () const =0</td></tr>
+<tr class="separator:a41758d921a2d7e83f446aa4fec00d598"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5d1b5640d654f49399145f912e77c19b" id="r_a5d1b5640d654f49399145f912e77c19b"><td class="memItemLeft" align="right" valign="top">virtual uint64_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a5d1b5640d654f49399145f912e77c19b">hash</a> (uint64_t seed) const =0</td></tr>
+<tr class="separator:a5d1b5640d654f49399145f912e77c19b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a30420a3881779c822ab06c0405ea7b28" id="r_a30420a3881779c822ab06c0405ea7b28"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a30420a3881779c822ab06c0405ea7b28">operator==</a> (const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;other) const =0</td></tr>
+<tr class="separator:a30420a3881779c822ab06c0405ea7b28"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac19e354a8bcd28f60783b70d8a761030" id="r_ac19e354a8bcd28f60783b70d8a761030"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac19e354a8bcd28f60783b70d8a761030">operator!=</a> (const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;other) const =0</td></tr>
+<tr class="separator:ac19e354a8bcd28f60783b70d8a761030"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="friends" name="friends"></a>
+Friends</h2></td></tr>
+<tr class="memitem:a264e0d1d13c7d4d5f05bdda5d5ada5c0" id="r_a264e0d1d13c7d4d5f05bdda5d5ada5c0"><td class="memItemLeft" align="right" valign="top">std::ostream &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a264e0d1d13c7d4d5f05bdda5d5ada5c0">operator&lt;&lt;</a> (std::ostream &amp;os, const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;rcp)</td></tr>
+<tr class="separator:a264e0d1d13c7d4d5f05bdda5d5ada5c0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Abstract interface encapsulating a set of reactions representing a single chain or pathway. </p>
+<p><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> implementations (see <code><a class="el" href="chains_8h.html" title="Concrete implementations of ReactionChainPolicy for key stellar reaction chains.">chains.h</a></code>) supply a ReactionSet describing the reactions that comprise a nuclear reaction chain (for example the proton-proton chain, CNO cycle, etc.).</p>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><a class="code hl_class" href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html">ProtonProtonChainPolicy</a> pp;</div>
+<div class="line"><span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a>&amp; reactions = pp.<a class="code hl_function" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ae689a0dfeb36f85ddc6db5a8dc4f630a">get_reactions</a>();</div>
+<div class="ttc" id="aclassgridfire_1_1policy_1_1MultiReactionChainPolicy_html_ae689a0dfeb36f85ddc6db5a8dc4f630a"><div class="ttname"><a href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ae689a0dfeb36f85ddc6db5a8dc4f630a">gridfire::policy::MultiReactionChainPolicy::get_reactions</a></div><div class="ttdeci">const reaction::ReactionSet &amp; get_reactions() const override</div><div class="ttdoc">Returns the combined ReactionSet of all child chain policies.</div><div class="ttdef"><b>Definition</b> policy_logical.cpp:20</div></div>
+<div class="ttc" id="aclassgridfire_1_1policy_1_1ProtonProtonChainPolicy_html"><div class="ttname"><a href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html">gridfire::policy::ProtonProtonChainPolicy</a></div><div class="ttdoc">Proton-Proton Chain Policy.</div><div class="ttdef"><b>Definition</b> chains.h:197</div></div>
+<div class="ttc" id="aclassgridfire_1_1reaction_1_1ReactionSet_html"><div class="ttname"><a href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></div><div class="ttdef"><b>Definition</b> reaction.h:842</div></div>
+</div><!-- fragment --></dd></dl>
+<dl class="section note"><dt>Note</dt><dd>Concrete implementations may throw exceptions on construction if the underlying reaction database (e.g. REACLIB) does not include requested reactions. See <code><a class="el" href="chains_8h.html" title="Concrete implementations of ReactionChainPolicy for key stellar reaction chains.">chains.h</a></code> for details. </dd></dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="aa3e6c1e4844fe788aeb08d272070ae13" name="aa3e6c1e4844fe788aeb08d272070ae13"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa3e6c1e4844fe788aeb08d272070ae13">&#9670;&#160;</a></span>~ReactionChainPolicy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual gridfire::policy::ReactionChainPolicy::~ReactionChainPolicy </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ac24ff49b7715ad3eefea4bed1bf23686" name="ac24ff49b7715ad3eefea4bed1bf23686"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac24ff49b7715ad3eefea4bed1bf23686">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt; gridfire::policy::ReactionChainPolicy::clone </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html#affd234a60ba31decca25b3367c7ede5e">gridfire::policy::ProtonProtonIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html#ad70b081f8623fad207050c0f81f6a457">gridfire::policy::ProtonProtonIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html#ac84ab054fc0f600f783ea3282d6fd4f6">gridfire::policy::ProtonProtonIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIChainPolicy.html#a83042f4626ec22810314fa5181d3392a">gridfire::policy::CNOIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html#ab3aa5daaf2d9274770f981d8f67ae20b">gridfire::policy::CNOIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIIIChainPolicy.html#a9c0e056615742b3d77f47b3eb676ff28">gridfire::policy::CNOIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html#a35bef8035035eb85bb188ede6045556c">gridfire::policy::CNOIVChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html#ae70a448fdeee35e159784fd6a506dce7">gridfire::policy::HotCNOIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html#afeb9b237b70963715adc64ad68e11675">gridfire::policy::HotCNOIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html#a5d86341bb4370647762c889519793d41">gridfire::policy::HotCNOIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html#a447ff0d2de9df09400e63f0fc087efa3">gridfire::policy::TripleAlphaChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab3bbbf21164211a01c5398a0ee281bb2">gridfire::policy::MultiReactionChainPolicy</a>, and <a class="el" href="classPyReactionChainPolicy.html#a0b44991bd6a5edebb861e78a26f783cd">PyReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a68239737ada169238251f1994680fc7e" name="a68239737ada169238251f1994680fc7e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a68239737ada169238251f1994680fc7e">&#9670;&#160;</a></span>contains() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual bool gridfire::policy::ReactionChainPolicy::contains </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classPyReactionChainPolicy.html#ab30925d8253ecdabb73ea2b116e9c7da">PyReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8984d58dee6865d4bd98aedf31bb445e">gridfire::policy::TemperatureDependentChainPolicy</a>, and <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a864a00097e80db7b0f3838d696aa9f5d">gridfire::policy::MultiReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a0c9a42646920ac02c8d1e63dfe6f9461" name="a0c9a42646920ac02c8d1e63dfe6f9461"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0c9a42646920ac02c8d1e63dfe6f9461">&#9670;&#160;</a></span>contains() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual bool gridfire::policy::ReactionChainPolicy::contains </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>id</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8869287d36b3ff143e7f84799ef35dd9">gridfire::policy::TemperatureDependentChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a792cf0af8e5c365d0332cd585968dae1">gridfire::policy::MultiReactionChainPolicy</a>, and <a class="el" href="classPyReactionChainPolicy.html#a16f289efd1d92eead3a3ca6fcfceba4d">PyReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="ad8bccf78e7fc99d08387aec5015e8849" name="ad8bccf78e7fc99d08387aec5015e8849"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad8bccf78e7fc99d08387aec5015e8849">&#9670;&#160;</a></span>get_reactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp; gridfire::policy::ReactionChainPolicy::get_reactions </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Returns the ReactionSet describing this chain. </p>
+<dl class="section return"><dt>Returns</dt><dd>const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a>&amp; reference to the chain's reactions.</dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;set = chainPolicy.get_reactions();</div>
+<div class="line">std::cout &lt;&lt; <span class="stringliteral">&quot;Chain contains &quot;</span> &lt;&lt; set.<a class="code hl_function" href="classgridfire_1_1reaction_1_1ReactionSet.html#af14cf34d7367cb6a6be5191724c2d4cf">size</a>() &lt;&lt; <span class="stringliteral">&quot; reactions\n&quot;</span>;</div>
+<div class="ttc" id="aclassgridfire_1_1reaction_1_1ReactionSet_html_af14cf34d7367cb6a6be5191724c2d4cf"><div class="ttname"><a href="classgridfire_1_1reaction_1_1ReactionSet.html#af14cf34d7367cb6a6be5191724c2d4cf">gridfire::reaction::ReactionSet::size</a></div><div class="ttdeci">size_t size() const</div><div class="ttdoc">Gets the number of reactions in the set.</div><div class="ttdef"><b>Definition</b> reaction.h:903</div></div>
+</div><!-- fragment --></dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname"><a class="el" href="classgridfire_1_1exceptions_1_1MissingBaseReactionError.html" title="Exception thrown when a required reaction is missing from the underlying database (e....">gridfire::exceptions::MissingBaseReactionError</a></td><td>may be thrown by concrete implementations at construction time if the required reactions cannot be found in the base reaction set. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ae93a5a2d753ddd32f2a4a5a750ef44b4">gridfire::policy::TemperatureDependentChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ae689a0dfeb36f85ddc6db5a8dc4f630a">gridfire::policy::MultiReactionChainPolicy</a>, and <a class="el" href="classPyReactionChainPolicy.html#a5fd4ff9137e1d76decf7318066d45969">PyReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a5d1b5640d654f49399145f912e77c19b" name="a5d1b5640d654f49399145f912e77c19b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5d1b5640d654f49399145f912e77c19b">&#9670;&#160;</a></span>hash()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual uint64_t gridfire::policy::ReactionChainPolicy::hash </td>
+          <td>(</td>
+          <td class="paramtype">uint64_t&#160;</td>
+          <td class="paramname"><em>seed</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a0b2c469f8e17ccba0f45632b19395731">gridfire::policy::TemperatureDependentChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ae5ac6534ec96cfcdefcad2f9694efd36">gridfire::policy::MultiReactionChainPolicy</a>, and <a class="el" href="classPyReactionChainPolicy.html#a42d2f71522e7f13624c2598597f14809">PyReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a41758d921a2d7e83f446aa4fec00d598" name="a41758d921a2d7e83f446aa4fec00d598"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a41758d921a2d7e83f446aa4fec00d598">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::string gridfire::policy::ReactionChainPolicy::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html#ab9542fd71e87159216cdd51501b6d1d3">gridfire::policy::ProtonProtonIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html#a2782c6abea3596cf566a246239b96f80">gridfire::policy::ProtonProtonIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html#a06d103e970b19c9a40cbae8d52ef0d0c">gridfire::policy::ProtonProtonIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html#a2e818c9a269bc859b01985fea8423ac0">gridfire::policy::ProtonProtonChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIChainPolicy.html#ad3d4721e3046d792c0aa8e5c6c99aa2d">gridfire::policy::CNOIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html#a6bf1057d28cb37db4f9ffde9cb3815ed">gridfire::policy::CNOIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIIIChainPolicy.html#a96abfb16ec2b692c070da139444435e3">gridfire::policy::CNOIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html#a101a884a8ead5d961fd5d43a0dbffde8">gridfire::policy::CNOIVChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOChainPolicy.html#a66511726b37f0e114cba2dd15db42440">gridfire::policy::CNOChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html#a13b2857d96e42f162888dcc294a27b9b">gridfire::policy::HotCNOIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html#a262a18dafbc68db925beefb14c43668f">gridfire::policy::HotCNOIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html#a59168da23f2d6b4d8667f5118153b514">gridfire::policy::HotCNOIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1HotCNOChainPolicy.html#a95e2f3c1a32b3f2dd5d5601c2a81f42f">gridfire::policy::HotCNOChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html#a2d6543b9fa7f96b8b21d7e7545f9a22d">gridfire::policy::TripleAlphaChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html#a7411e9a885d7ebb79590d8e1c5834881">gridfire::policy::MainSequenceReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ac21f837d0d452d32588451f48d5482e6">gridfire::policy::MultiReactionChainPolicy</a>, and <a class="el" href="classPyReactionChainPolicy.html#af148bf87fea9ebe61de745913a2fd504">PyReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="ac19e354a8bcd28f60783b70d8a761030" name="ac19e354a8bcd28f60783b70d8a761030"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac19e354a8bcd28f60783b70d8a761030">&#9670;&#160;</a></span>operator!=()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual bool gridfire::policy::ReactionChainPolicy::operator!= </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950">gridfire::policy::TemperatureDependentChainPolicy</a>, and <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aa36844fe4417617175d31124e541da50">gridfire::policy::MultiReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a30420a3881779c822ab06c0405ea7b28" name="a30420a3881779c822ab06c0405ea7b28"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a30420a3881779c822ab06c0405ea7b28">&#9670;&#160;</a></span>operator==()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual bool gridfire::policy::ReactionChainPolicy::operator== </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">gridfire::policy::TemperatureDependentChainPolicy</a>, and <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#abc3ed7c255b3e6c06e292aee8ef7f46d">gridfire::policy::MultiReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Friends And Related Symbol Documentation</h2>
+<a id="a264e0d1d13c7d4d5f05bdda5d5ada5c0" name="a264e0d1d13c7d4d5f05bdda5d5ada5c0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a264e0d1d13c7d4d5f05bdda5d5ada5c0">&#9670;&#160;</a></span>operator&lt;&lt;</h2>
+
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+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::ostream &amp; operator&lt;&lt; </td>
+          <td>(</td>
+          <td class="paramtype">std::ostream &amp;&#160;</td>
+          <td class="paramname"><em>os</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;&#160;</td>
+          <td class="paramname"><em>rcp</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">friend</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/policy/<a class="el" href="policy__abstract_8h.html">policy_abstract.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
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+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1policy.html">policy</a></li><li class="navelem"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
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+    [ "operator!=", "classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac19e354a8bcd28f60783b70d8a761030", null ],
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+<!-- Node1&#45;&gt;Node2 -->
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+<title>Node1&#45;&gt;Node2</title>
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+<text text-anchor="start" x="178" y="-594" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::policy::MultiReaction</text>
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+<text text-anchor="start" x="181" y="-282" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::policy::Temperature</text>
+<text text-anchor="middle" x="249.5" y="-271" font-family="Helvetica,sans-Serif" font-size="10.00">DependentChainPolicy</text>
+</a>
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+<text text-anchor="middle" x="448.5" y="-679" font-family="Helvetica,sans-Serif" font-size="10.00">Policy</text>
+</a>
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+<title>Node5</title>
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+<text text-anchor="start" x="377.5" y="-642" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::policy::HotCNOChain</text>
+<text text-anchor="middle" x="448.5" y="-631" font-family="Helvetica,sans-Serif" font-size="10.00">Policy</text>
+</a>
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+<text text-anchor="start" x="375" y="-594" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::policy::MainSequence</text>
+<text text-anchor="middle" x="448.5" y="-583" font-family="Helvetica,sans-Serif" font-size="10.00">ReactionChainPolicy</text>
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+<text text-anchor="start" x="395" y="-546" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::policy::Proton</text>
+<text text-anchor="middle" x="448.5" y="-535" font-family="Helvetica,sans-Serif" font-size="10.00">ProtonChainPolicy</text>
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+<text text-anchor="start" x="384.5" y="-498" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::policy::CNOIChain</text>
+<text text-anchor="middle" x="448.5" y="-487" font-family="Helvetica,sans-Serif" font-size="10.00">Policy</text>
+</a>
+</g>
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+<!-- Node10 -->
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+<!-- Node8&#45;&gt;Node10 -->
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+<!-- Node11 -->
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+<title>Node11</title>
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+<!-- Node8&#45;&gt;Node11 -->
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+<!-- Node12 -->
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+<!-- Node8&#45;&gt;Node12 -->
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+<title>Node8&#45;&gt;Node12</title>
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+<text text-anchor="middle" x="448.5" y="-199" font-family="Helvetica,sans-Serif" font-size="10.00">Policy</text>
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+<text text-anchor="start" x="395" y="-162" font-family="Helvetica,sans-Serif" font-size="10.00">gridfire::policy::Proton</text>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div id="MSearchSelectWindow"
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+  <div class="headertitle"><div class="title">gridfire::policy::TemperatureDependentChainPolicy Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac24ff49b7715ad3eefea4bed1bf23686">clone</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8869287d36b3ff143e7f84799ef35dd9">contains</a>(const std::string &amp;id) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8984d58dee6865d4bd98aedf31bb445e">contains</a>(const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ae93a5a2d753ddd32f2a4a5a750ef44b4">get_reactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a0b2c469f8e17ccba0f45632b19395731">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a2e10b0f832b1addbaa90c14363732c7a">is_active</a>(double T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a69882ddefb0f27b13433616411a1484a">m_reactionIDs</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ad9cd9e4826f60e066feda2ffc5d37338">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a22d731c0a0bf804f7c8b0e22cf13b688">m_tempRange</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a41758d921a2d7e83f446aa4fec00d598">name</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950">operator!=</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">operator==</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a07f5a057d382874ec641b3494338dc65">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ab7f64e19d0ce405aba55b518ed301b92">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a4886c44a082151ebf7b75594dbc6856b">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9, std::optional&lt; double &gt; maxT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a74b59b1cb02703834373fb7a3d09614e">~TemperatureDependentChainPolicy</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html b/docs/html/classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html
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index 00000000..f9ba5d11
--- /dev/null
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+<title>GridFire: gridfire::policy::TemperatureDependentChainPolicy Class Reference</title>
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
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+<div id="MSearchSelectWindow"
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+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pro-attribs">Protected Attributes</a> &#124;
+<a href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::TemperatureDependentChainPolicy Class Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Base class for reaction chain policies that are active only within specific temperature ranges.  
+ <a href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;chains.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::TemperatureDependentChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy__inherit__graph.svg" width="100%" height="600"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::policy::TemperatureDependentChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy__coll__graph.svg" width="100%" height="524"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1policy_1_1TemperatureDependentChainPolicy_1_1ActiveTempRange.html">ActiveTempRange</a></td></tr>
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+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a07f5a057d382874ec641b3494338dc65" id="r_a07f5a057d382874ec641b3494338dc65"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a07f5a057d382874ec641b3494338dc65">TemperatureDependentChainPolicy</a> (const std::vector&lt; std::string &gt; &amp;reactionIDs)</td></tr>
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+<tr class="memdesc:a4886c44a082151ebf7b75594dbc6856b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a new Temperature Dependent Chain Policy object.  <br /></td></tr>
+<tr class="separator:a4886c44a082151ebf7b75594dbc6856b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a74b59b1cb02703834373fb7a3d09614e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:a74b59b1cb02703834373fb7a3d09614e"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:ae93a5a2d753ddd32f2a4a5a750ef44b4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the reactions that comprise the chain.  <br /></td></tr>
+<tr class="separator:ae93a5a2d753ddd32f2a4a5a750ef44b4"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a8869287d36b3ff143e7f84799ef35dd9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if a reaction or reaction ID is part of the chain.  <br /></td></tr>
+<tr class="separator:a8869287d36b3ff143e7f84799ef35dd9"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a8984d58dee6865d4bd98aedf31bb445e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if a reaction is part of the chain.  <br /></td></tr>
+<tr class="separator:a8984d58dee6865d4bd98aedf31bb445e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0b2c469f8e17ccba0f45632b19395731" id="r_a0b2c469f8e17ccba0f45632b19395731"><td class="memItemLeft" align="right" valign="top">uint64_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a0b2c469f8e17ccba0f45632b19395731">hash</a> (uint64_t seed) const override</td></tr>
+<tr class="memdesc:a0b2c469f8e17ccba0f45632b19395731"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate the hash for the reaction chain policy.  <br /></td></tr>
+<tr class="separator:a0b2c469f8e17ccba0f45632b19395731"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:add9c0230ad7c3e6e2cb182bdb4849c52" id="r_add9c0230ad7c3e6e2cb182bdb4849c52"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">operator==</a> (const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;other) const override</td></tr>
+<tr class="memdesc:add9c0230ad7c3e6e2cb182bdb4849c52"><td class="mdescLeft">&#160;</td><td class="mdescRight">Equality operator.  <br /></td></tr>
+<tr class="separator:add9c0230ad7c3e6e2cb182bdb4849c52"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a264dc45c3410ab3ec49a340633aa5950" id="r_a264dc45c3410ab3ec49a340633aa5950"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950">operator!=</a> (const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;other) const override</td></tr>
+<tr class="memdesc:a264dc45c3410ab3ec49a340633aa5950"><td class="mdescLeft">&#160;</td><td class="mdescRight">Inequality operator.  <br /></td></tr>
+<tr class="separator:a264dc45c3410ab3ec49a340633aa5950"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2e10b0f832b1addbaa90c14363732c7a" id="r_a2e10b0f832b1addbaa90c14363732c7a"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a2e10b0f832b1addbaa90c14363732c7a">is_active</a> (double T9) const</td></tr>
+<tr class="memdesc:a2e10b0f832b1addbaa90c14363732c7a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if the reaction chain is active at a given temperature.  <br /></td></tr>
+<tr class="separator:a2e10b0f832b1addbaa90c14363732c7a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td></tr>
+<tr class="memitem:aa3e6c1e4844fe788aeb08d272070ae13 inherit pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy" id="r_aa3e6c1e4844fe788aeb08d272070ae13"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a> ()=default</td></tr>
+<tr class="separator:aa3e6c1e4844fe788aeb08d272070ae13 inherit pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac24ff49b7715ad3eefea4bed1bf23686 inherit pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy" id="r_ac24ff49b7715ad3eefea4bed1bf23686"><td class="memItemLeft" align="right" valign="top">virtual std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac24ff49b7715ad3eefea4bed1bf23686">clone</a> () const =0</td></tr>
+<tr class="separator:ac24ff49b7715ad3eefea4bed1bf23686 inherit pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a41758d921a2d7e83f446aa4fec00d598 inherit pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy" id="r_a41758d921a2d7e83f446aa4fec00d598"><td class="memItemLeft" align="right" valign="top">virtual std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a41758d921a2d7e83f446aa4fec00d598">name</a> () const =0</td></tr>
+<tr class="separator:a41758d921a2d7e83f446aa4fec00d598 inherit pub_methods_classgridfire_1_1policy_1_1ReactionChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pro-attribs" name="pro-attribs"></a>
+Protected Attributes</h2></td></tr>
+<tr class="memitem:a22d731c0a0bf804f7c8b0e22cf13b688" id="r_a22d731c0a0bf804f7c8b0e22cf13b688"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1policy_1_1TemperatureDependentChainPolicy_1_1ActiveTempRange.html">ActiveTempRange</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a22d731c0a0bf804f7c8b0e22cf13b688">m_tempRange</a></td></tr>
+<tr class="memdesc:a22d731c0a0bf804f7c8b0e22cf13b688"><td class="mdescLeft">&#160;</td><td class="mdescRight">Active temperature range for the reaction chain.  <br /></td></tr>
+<tr class="separator:a22d731c0a0bf804f7c8b0e22cf13b688"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a69882ddefb0f27b13433616411a1484a" id="r_a69882ddefb0f27b13433616411a1484a"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::string &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a69882ddefb0f27b13433616411a1484a">m_reactionIDs</a></td></tr>
+<tr class="memdesc:a69882ddefb0f27b13433616411a1484a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Vector of reaction IDs that comprise the chain.  <br /></td></tr>
+<tr class="separator:a69882ddefb0f27b13433616411a1484a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad9cd9e4826f60e066feda2ffc5d37338" id="r_ad9cd9e4826f60e066feda2ffc5d37338"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ad9cd9e4826f60e066feda2ffc5d37338">m_reactions</a></td></tr>
+<tr class="memdesc:ad9cd9e4826f60e066feda2ffc5d37338"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of reactions that comprise the chain.  <br /></td></tr>
+<tr class="separator:ad9cd9e4826f60e066feda2ffc5d37338"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Base class for reaction chain policies that are active only within specific temperature ranges. </p>
+<p>Such chains may only operate effectively within certain temperature regimes, reflecting the physical conditions required for the reactions to proceed. This class allows defining such temperature-dependent behavior. This is one of the locations where domain specific knowledge is allowed within GridFire. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a07f5a057d382874ec641b3494338dc65" name="a07f5a057d382874ec641b3494338dc65"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a07f5a057d382874ec641b3494338dc65">&#9670;&#160;</a></span>TemperatureDependentChainPolicy() <span class="overload">[1/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::policy::TemperatureDependentChainPolicy::TemperatureDependentChainPolicy </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; std::string &gt; &amp;&#160;</td>
+          <td class="paramname"><em>reactionIDs</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct a new Temperature Dependent Chain Policy object. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactionIDs</td><td>Vector of reaction IDs that comprise the chain</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section note"><dt>Note</dt><dd>The chain is considered active at all temperatures if no min/max T9 are provided. </dd></dl>
+
+</div>
+</div>
+<a id="ab7f64e19d0ce405aba55b518ed301b92" name="ab7f64e19d0ce405aba55b518ed301b92"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab7f64e19d0ce405aba55b518ed301b92">&#9670;&#160;</a></span>TemperatureDependentChainPolicy() <span class="overload">[2/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::policy::TemperatureDependentChainPolicy::TemperatureDependentChainPolicy </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; std::string &gt; &amp;&#160;</td>
+          <td class="paramname"><em>reactionIDs</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">std::optional&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>minT9</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct a new Temperature Dependent Chain Policy object. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactionIDs</td><td>Vector of reaction IDs that comprise the chain </td></tr>
+    <tr><td class="paramname">minT9</td><td>Minimum temperature (in T9) for which the chain is active</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section note"><dt>Note</dt><dd>The chain is considered active at all temperatures above minT9. </dd></dl>
+
+</div>
+</div>
+<a id="a4886c44a082151ebf7b75594dbc6856b" name="a4886c44a082151ebf7b75594dbc6856b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4886c44a082151ebf7b75594dbc6856b">&#9670;&#160;</a></span>TemperatureDependentChainPolicy() <span class="overload">[3/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::policy::TemperatureDependentChainPolicy::TemperatureDependentChainPolicy </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; std::string &gt; &amp;&#160;</td>
+          <td class="paramname"><em>reactionIDs</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">std::optional&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>minT9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">std::optional&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>maxT9</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct a new Temperature Dependent Chain Policy object. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactionIDs</td><td>Vector of reaction IDs that comprise the chain </td></tr>
+    <tr><td class="paramname">minT9</td><td>Minimum temperature (in T9) for which the chain is active </td></tr>
+    <tr><td class="paramname">maxT9</td><td>Maximum temperature (in T9) for which the chain is active </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a74b59b1cb02703834373fb7a3d09614e" name="a74b59b1cb02703834373fb7a3d09614e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a74b59b1cb02703834373fb7a3d09614e">&#9670;&#160;</a></span>~TemperatureDependentChainPolicy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::policy::TemperatureDependentChainPolicy::~TemperatureDependentChainPolicy </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Virtual destructor. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a8984d58dee6865d4bd98aedf31bb445e" name="a8984d58dee6865d4bd98aedf31bb445e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8984d58dee6865d4bd98aedf31bb445e">&#9670;&#160;</a></span>contains() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::policy::TemperatureDependentChainPolicy::contains </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Check if a reaction is part of the chain. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The reaction to check </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the reaction is part of the chain, false otherwise </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a68239737ada169238251f1994680fc7e">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a8869287d36b3ff143e7f84799ef35dd9" name="a8869287d36b3ff143e7f84799ef35dd9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8869287d36b3ff143e7f84799ef35dd9">&#9670;&#160;</a></span>contains() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::policy::TemperatureDependentChainPolicy::contains </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>id</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Check if a reaction or reaction ID is part of the chain. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">id</td><td>The reaction ID to check </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the reaction ID is part of the chain, false otherwise </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a0c9a42646920ac02c8d1e63dfe6f9461">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="ae93a5a2d753ddd32f2a4a5a750ef44b4" name="ae93a5a2d753ddd32f2a4a5a750ef44b4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae93a5a2d753ddd32f2a4a5a750ef44b4">&#9670;&#160;</a></span>get_reactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp; gridfire::policy::TemperatureDependentChainPolicy::get_reactions </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Get the reactions that comprise the chain. </p>
+<dl class="section return"><dt>Returns</dt><dd>The set of reactions comprising the chain </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ad8bccf78e7fc99d08387aec5015e8849">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a0b2c469f8e17ccba0f45632b19395731" name="a0b2c469f8e17ccba0f45632b19395731"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0b2c469f8e17ccba0f45632b19395731">&#9670;&#160;</a></span>hash()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">uint64_t gridfire::policy::TemperatureDependentChainPolicy::hash </td>
+          <td>(</td>
+          <td class="paramtype">uint64_t&#160;</td>
+          <td class="paramname"><em>seed</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Generate the hash for the reaction chain policy. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">seed</td><td>Seed value for the hash </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Unique hash representing the reaction chain policy. XXHash64 is used internally for speed and collision resistance. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a5d1b5640d654f49399145f912e77c19b">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="a2e10b0f832b1addbaa90c14363732c7a" name="a2e10b0f832b1addbaa90c14363732c7a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2e10b0f832b1addbaa90c14363732c7a">&#9670;&#160;</a></span>is_active()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::policy::TemperatureDependentChainPolicy::is_active </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Check if the reaction chain is active at a given temperature. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in billions of Kelvin (T9) </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the chain is active at the given temperature, false otherwise </dd></dl>
+
+</div>
+</div>
+<a id="a264dc45c3410ab3ec49a340633aa5950" name="a264dc45c3410ab3ec49a340633aa5950"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a264dc45c3410ab3ec49a340633aa5950">&#9670;&#160;</a></span>operator!=()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::policy::TemperatureDependentChainPolicy::operator!= </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Inequality operator. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>The other <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> to compare against </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the two policies are not equal, false otherwise </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac19e354a8bcd28f60783b70d8a761030">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<a id="add9c0230ad7c3e6e2cb182bdb4849c52" name="add9c0230ad7c3e6e2cb182bdb4849c52"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#add9c0230ad7c3e6e2cb182bdb4849c52">&#9670;&#160;</a></span>operator==()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::policy::TemperatureDependentChainPolicy::operator== </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Equality operator. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>The other <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> to compare against </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the two policies are equal, false otherwise </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a30420a3881779c822ab06c0405ea7b28">gridfire::policy::ReactionChainPolicy</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a69882ddefb0f27b13433616411a1484a" name="a69882ddefb0f27b13433616411a1484a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a69882ddefb0f27b13433616411a1484a">&#9670;&#160;</a></span>m_reactionIDs</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;std::string&gt; gridfire::policy::TemperatureDependentChainPolicy::m_reactionIDs</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Vector of reaction IDs that comprise the chain. </p>
+
+</div>
+</div>
+<a id="ad9cd9e4826f60e066feda2ffc5d37338" name="ad9cd9e4826f60e066feda2ffc5d37338"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad9cd9e4826f60e066feda2ffc5d37338">&#9670;&#160;</a></span>m_reactions</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> gridfire::policy::TemperatureDependentChainPolicy::m_reactions</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Set of reactions that comprise the chain. </p>
+
+</div>
+</div>
+<a id="a22d731c0a0bf804f7c8b0e22cf13b688" name="a22d731c0a0bf804f7c8b0e22cf13b688"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a22d731c0a0bf804f7c8b0e22cf13b688">&#9670;&#160;</a></span>m_tempRange</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1policy_1_1TemperatureDependentChainPolicy_1_1ActiveTempRange.html">ActiveTempRange</a> gridfire::policy::TemperatureDependentChainPolicy::m_tempRange</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Active temperature range for the reaction chain. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/policy/<a class="el" href="chains_8h.html">chains.h</a></li>
+<li>src/lib/policy/<a class="el" href="chains_8cpp.html">chains.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1policy.html">policy</a></li><li class="navelem"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">TemperatureDependentChainPolicy</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
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+var classgridfire_1_1policy_1_1TemperatureDependentChainPolicy =
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+    [ "TemperatureDependentChainPolicy", "classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a4886c44a082151ebf7b75594dbc6856b", null ],
+    [ "~TemperatureDependentChainPolicy", "classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a74b59b1cb02703834373fb7a3d09614e", null ],
+    [ "contains", "classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8984d58dee6865d4bd98aedf31bb445e", null ],
+    [ "contains", "classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8869287d36b3ff143e7f84799ef35dd9", null ],
+    [ "get_reactions", "classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ae93a5a2d753ddd32f2a4a5a750ef44b4", null ],
+    [ "hash", "classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a0b2c469f8e17ccba0f45632b19395731", null ],
+    [ "is_active", "classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a2e10b0f832b1addbaa90c14363732c7a", null ],
+    [ "operator!=", "classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950", null ],
+    [ "operator==", "classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52", null ],
+    [ "m_reactionIDs", "classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a69882ddefb0f27b13433616411a1484a", null ],
+    [ "m_reactions", "classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ad9cd9e4826f60e066feda2ffc5d37338", null ],
+    [ "m_tempRange", "classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a22d731c0a0bf804f7c8b0e22cf13b688", null ]
+];
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+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html">gridfire::policy::TripleAlphaChainPolicy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html#a447ff0d2de9df09400e63f0fc087efa3">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html">gridfire::policy::TripleAlphaChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8869287d36b3ff143e7f84799ef35dd9">contains</a>(const std::string &amp;id) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8984d58dee6865d4bd98aedf31bb445e">contains</a>(const reaction::Reaction &amp;reaction) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ae93a5a2d753ddd32f2a4a5a750ef44b4">get_reactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a0b2c469f8e17ccba0f45632b19395731">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a2e10b0f832b1addbaa90c14363732c7a">is_active</a>(double T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a69882ddefb0f27b13433616411a1484a">m_reactionIDs</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ad9cd9e4826f60e066feda2ffc5d37338">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a22d731c0a0bf804f7c8b0e22cf13b688">m_tempRange</a></td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html#a2d6543b9fa7f96b8b21d7e7545f9a22d">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html">gridfire::policy::TripleAlphaChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950">operator!=</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">operator==</a>(const ReactionChainPolicy &amp;other) const override</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a07f5a057d382874ec641b3494338dc65">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ab7f64e19d0ce405aba55b518ed301b92">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a4886c44a082151ebf7b75594dbc6856b">TemperatureDependentChainPolicy</a>(const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9, std::optional&lt; double &gt; maxT9)</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html#a857760f885820ad7cb0cee2d8512d36d">TripleAlphaChainPolicy</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html">gridfire::policy::TripleAlphaChainPolicy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">~ReactionChainPolicy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">gridfire::policy::ReactionChainPolicy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a74b59b1cb02703834373fb7a3d09614e">~TemperatureDependentChainPolicy</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td><td class="entry"></td></tr>
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+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::TripleAlphaChainPolicy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Triple-Alpha Chain Policy.  
+ <a href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html#details">More...</a></p>
+
+<p><code>#include &lt;chains.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::policy::TripleAlphaChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1TripleAlphaChainPolicy__inherit__graph.svg" width="215" height="227"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::policy::TripleAlphaChainPolicy:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1policy_1_1TripleAlphaChainPolicy__coll__graph.svg" width="100%" height="524"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a857760f885820ad7cb0cee2d8512d36d" id="r_a857760f885820ad7cb0cee2d8512d36d"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html#a857760f885820ad7cb0cee2d8512d36d">TripleAlphaChainPolicy</a> ()</td></tr>
+<tr class="separator:a857760f885820ad7cb0cee2d8512d36d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a447ff0d2de9df09400e63f0fc087efa3" id="r_a447ff0d2de9df09400e63f0fc087efa3"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html#a447ff0d2de9df09400e63f0fc087efa3">clone</a> () const override</td></tr>
+<tr class="separator:a447ff0d2de9df09400e63f0fc087efa3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2d6543b9fa7f96b8b21d7e7545f9a22d" id="r_a2d6543b9fa7f96b8b21d7e7545f9a22d"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html#a2d6543b9fa7f96b8b21d7e7545f9a22d">name</a> () const override</td></tr>
+<tr class="separator:a2d6543b9fa7f96b8b21d7e7545f9a22d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">gridfire::policy::TemperatureDependentChainPolicy</a></td></tr>
+<tr class="memitem:a07f5a057d382874ec641b3494338dc65 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a07f5a057d382874ec641b3494338dc65"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a07f5a057d382874ec641b3494338dc65">TemperatureDependentChainPolicy</a> (const std::vector&lt; std::string &gt; &amp;reactionIDs)</td></tr>
+<tr class="memdesc:a07f5a057d382874ec641b3494338dc65 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a new Temperature Dependent Chain Policy object.  <br /></td></tr>
+<tr class="separator:a07f5a057d382874ec641b3494338dc65 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab7f64e19d0ce405aba55b518ed301b92 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_ab7f64e19d0ce405aba55b518ed301b92"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ab7f64e19d0ce405aba55b518ed301b92">TemperatureDependentChainPolicy</a> (const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9)</td></tr>
+<tr class="memdesc:ab7f64e19d0ce405aba55b518ed301b92 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a new Temperature Dependent Chain Policy object.  <br /></td></tr>
+<tr class="separator:ab7f64e19d0ce405aba55b518ed301b92 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4886c44a082151ebf7b75594dbc6856b inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a4886c44a082151ebf7b75594dbc6856b"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a4886c44a082151ebf7b75594dbc6856b">TemperatureDependentChainPolicy</a> (const std::vector&lt; std::string &gt; &amp;reactionIDs, std::optional&lt; double &gt; minT9, std::optional&lt; double &gt; maxT9)</td></tr>
+<tr class="memdesc:a4886c44a082151ebf7b75594dbc6856b inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a new Temperature Dependent Chain Policy object.  <br /></td></tr>
+<tr class="separator:a4886c44a082151ebf7b75594dbc6856b inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a74b59b1cb02703834373fb7a3d09614e inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a74b59b1cb02703834373fb7a3d09614e"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a74b59b1cb02703834373fb7a3d09614e">~TemperatureDependentChainPolicy</a> () override=default</td></tr>
+<tr class="memdesc:a74b59b1cb02703834373fb7a3d09614e inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:a74b59b1cb02703834373fb7a3d09614e inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae93a5a2d753ddd32f2a4a5a750ef44b4 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_ae93a5a2d753ddd32f2a4a5a750ef44b4"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#ae93a5a2d753ddd32f2a4a5a750ef44b4">get_reactions</a> () const override</td></tr>
+<tr class="memdesc:ae93a5a2d753ddd32f2a4a5a750ef44b4 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get the reactions that comprise the chain.  <br /></td></tr>
+<tr class="separator:ae93a5a2d753ddd32f2a4a5a750ef44b4 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8869287d36b3ff143e7f84799ef35dd9 inherit pub_methods_classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" id="r_a8869287d36b3ff143e7f84799ef35dd9"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8869287d36b3ff143e7f84799ef35dd9">contains</a> (const std::string &amp;id) const override</td></tr>
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+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Triple-Alpha Chain Policy. </p>
+<p>This class implements the Triple-Alpha process of nuclear reactions. This chain's minimum temperature is set to T9=0.01 (or 1e7K). This chain includes reactions:</p><ul>
+<li>he4(he4,a)be8</li>
+<li>be8(he4,g)c12 </li>
+</ul>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
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+<h2 class="memtitle"><span class="permalink"><a href="#a857760f885820ad7cb0cee2d8512d36d">&#9670;&#160;</a></span>TripleAlphaChainPolicy()</h2>
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+<div class="memitem">
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+          <td class="memname">gridfire::policy::TripleAlphaChainPolicy::TripleAlphaChainPolicy </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a447ff0d2de9df09400e63f0fc087efa3" name="a447ff0d2de9df09400e63f0fc087efa3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a447ff0d2de9df09400e63f0fc087efa3">&#9670;&#160;</a></span>clone()</h2>
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+          <td>(</td>
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+<h2 class="memtitle"><span class="permalink"><a href="#a2d6543b9fa7f96b8b21d7e7545f9a22d">&#9670;&#160;</a></span>name()</h2>
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+
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+<hr/>The documentation for this class was generated from the following files:<ul>
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+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakRateInterpolator Member List</div></div>
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+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">gridfire::rates::weak::WeakRateInterpolator</a>, including all inherited members.</p>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#a976f84b6f6e33b5f3dd733a771afd7ba">available_isotopes</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">gridfire::rates::weak::WeakRateInterpolator</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#ac04ae382defc51645c632db6ad3830d7">get_rate_derivatives</a>(uint16_t A, uint8_t Z, double t9, double log_rhoYe) const</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">gridfire::rates::weak::WeakRateInterpolator</a></td><td class="entry"></td></tr>
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+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#a2962864d8a6f8760a4228729838b6edb">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">gridfire::rates::weak::WeakRateInterpolator</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#a7a01f956eccd3a0a90dd08984ca3f009">m_rate_table</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">gridfire::rates::weak::WeakRateInterpolator</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#afd3e0e1c5edaf12609b5fc81c379e3e5">RowDataTable</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">gridfire::rates::weak::WeakRateInterpolator</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#a1efafe82d25d36b93a60a6fccbd5ca3d">WeakRateInterpolator</a>(const RowDataTable &amp;raw_data)</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">gridfire::rates::weak::WeakRateInterpolator</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
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diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html
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+</div>
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+
+<div class="header">
+  <div class="summary">
+<a href="#pub-types">Public Types</a> &#124;
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakRateInterpolator Class Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>3D table interpolator for tabulated weak reaction data by isotope.  
+ <a href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#details">More...</a></p>
+
+<p><code>#include &lt;weak_interpolator.h&gt;</code></p>
+<div class="dynheader">
+Collaboration diagram for gridfire::rates::weak::WeakRateInterpolator:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator__coll__graph.svg" width="448" height="491"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-types" name="pub-types"></a>
+Public Types</h2></td></tr>
+<tr class="memitem:afd3e0e1c5edaf12609b5fc81c379e3e5" id="r_afd3e0e1c5edaf12609b5fc81c379e3e5"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#afd3e0e1c5edaf12609b5fc81c379e3e5">RowDataTable</a> = std::array&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html">RateDataRow</a>, 77400 &gt;</td></tr>
+<tr class="memdesc:afd3e0e1c5edaf12609b5fc81c379e3e5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Raw weak-rate table type expected by the constructor.  <br /></td></tr>
+<tr class="separator:afd3e0e1c5edaf12609b5fc81c379e3e5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a1efafe82d25d36b93a60a6fccbd5ca3d" id="r_a1efafe82d25d36b93a60a6fccbd5ca3d"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#a1efafe82d25d36b93a60a6fccbd5ca3d">WeakRateInterpolator</a> (const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#afd3e0e1c5edaf12609b5fc81c379e3e5">RowDataTable</a> &amp;raw_data)</td></tr>
+<tr class="memdesc:a1efafe82d25d36b93a60a6fccbd5ca3d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct the interpolator from raw weak-rate rows.  <br /></td></tr>
+<tr class="separator:a1efafe82d25d36b93a60a6fccbd5ca3d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a976f84b6f6e33b5f3dd733a771afd7ba" id="r_a976f84b6f6e33b5f3dd733a771afd7ba"><td class="memItemLeft" align="right" valign="top">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#a976f84b6f6e33b5f3dd733a771afd7ba">available_isotopes</a> () const</td></tr>
+<tr class="memdesc:a976f84b6f6e33b5f3dd733a771afd7ba"><td class="mdescLeft">&#160;</td><td class="mdescRight">List isotopes for which tables are available.  <br /></td></tr>
+<tr class="separator:a976f84b6f6e33b5f3dd733a771afd7ba"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a730c8e7fe5218c5ce077531bc7924d79" id="r_a730c8e7fe5218c5ce077531bc7924d79"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html">WeakRatePayload</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1InterpolationError.html">InterpolationError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#a730c8e7fe5218c5ce077531bc7924d79">get_rates</a> (uint16_t A, uint8_t Z, double t9, double log_rhoYe) const</td></tr>
+<tr class="memdesc:a730c8e7fe5218c5ce077531bc7924d79"><td class="mdescLeft">&#160;</td><td class="mdescRight">Trilinear interpolation of weak-rate payload at a state.  <br /></td></tr>
+<tr class="separator:a730c8e7fe5218c5ce077531bc7924d79"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac04ae382defc51645c632db6ad3830d7" id="r_ac04ae382defc51645c632db6ad3830d7"><td class="memItemLeft" align="right" valign="top">std::expected&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives.html">WeakRateDerivatives</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1InterpolationError.html">InterpolationError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#ac04ae382defc51645c632db6ad3830d7">get_rate_derivatives</a> (uint16_t A, uint8_t Z, double t9, double log_rhoYe) const</td></tr>
+<tr class="memdesc:ac04ae382defc51645c632db6ad3830d7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Finite-difference partial derivatives of the log10() fields.  <br /></td></tr>
+<tr class="separator:ac04ae382defc51645c632db6ad3830d7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a2962864d8a6f8760a4228729838b6edb" id="r_a2962864d8a6f8760a4228729838b6edb"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#a2962864d8a6f8760a4228729838b6edb">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="separator:a2962864d8a6f8760a4228729838b6edb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7a01f956eccd3a0a90dd08984ca3f009" id="r_a7a01f956eccd3a0a90dd08984ca3f009"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; uint32_t, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html">IsotopeGrid</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#a7a01f956eccd3a0a90dd08984ca3f009">m_rate_table</a></td></tr>
+<tr class="memdesc:a7a01f956eccd3a0a90dd08984ca3f009"><td class="mdescLeft">&#160;</td><td class="mdescRight">Per-isotope grids over (T9, log10(rho*Ye), mu_e) with payloads at lattice nodes.  <br /></td></tr>
+<tr class="separator:a7a01f956eccd3a0a90dd08984ca3f009"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>3D table interpolator for tabulated weak reaction data by isotope. </p>
+<p>Builds per-isotope 3D grids over (T9, log10(rho*Ye), mu_e) and provides:</p><ul>
+<li>Trilinear interpolation of the tabulated log10(rate) and neutrino-loss fields into a <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html" title="Interpolated weak-rate payload at a single state.">WeakRatePayload</a> via <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#a730c8e7fe5218c5ce077531bc7924d79" title="Trilinear interpolation of weak-rate payload at a state.">get_rates()</a>.</li>
+<li>Finite-difference estimates of partial derivatives via <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#ac04ae382defc51645c632db6ad3830d7" title="Finite-difference partial derivatives of the log10() fields.">get_rate_derivatives()</a>.</li>
+</ul>
+<p>Implementation summary (constructor): rows are grouped by (A,Z), then each group's unique axis values are collected and sorted to form the three axes; the 3D payload array is populated at each lattice point with the 6 log10() fields from the raw table. </p>
+</div><h2 class="groupheader">Member Typedef Documentation</h2>
+<a id="afd3e0e1c5edaf12609b5fc81c379e3e5" name="afd3e0e1c5edaf12609b5fc81c379e3e5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afd3e0e1c5edaf12609b5fc81c379e3e5">&#9670;&#160;</a></span>RowDataTable</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">using <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#afd3e0e1c5edaf12609b5fc81c379e3e5">gridfire::rates::weak::WeakRateInterpolator::RowDataTable</a> =  std::array&lt;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html">RateDataRow</a>, 77400&gt;</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Raw weak-rate table type expected by the constructor. </p>
+<p>The size must match the number of rows compiled into the weak-rate library. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a1efafe82d25d36b93a60a6fccbd5ca3d" name="a1efafe82d25d36b93a60a6fccbd5ca3d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1efafe82d25d36b93a60a6fccbd5ca3d">&#9670;&#160;</a></span>WeakRateInterpolator()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::rates::weak::WeakRateInterpolator::WeakRateInterpolator </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#afd3e0e1c5edaf12609b5fc81c379e3e5">RowDataTable</a> &amp;&#160;</td>
+          <td class="paramname"><em>raw_data</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct the interpolator from raw weak-rate rows. </p>
+<p>Groups rows by isotope (A,Z), extracts unique sorted axes for T9, log10(rho*Ye), and mu_e, and fills an internal regular grid with the log10(rate) and neutrino-loss payloads at each node. No interpolation occurs at construction time. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a976f84b6f6e33b5f3dd733a771afd7ba" name="a976f84b6f6e33b5f3dd733a771afd7ba"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a976f84b6f6e33b5f3dd733a771afd7ba">&#9670;&#160;</a></span>available_isotopes()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; fourdst::atomic::Species &gt; gridfire::rates::weak::WeakRateInterpolator::available_isotopes </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>List isotopes for which tables are available. </p>
+<dl class="section return"><dt>Returns</dt><dd>Vector of available Species (A,Z) derived from internal tables. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If any packed (A,Z) cannot be converted to Species. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><a class="code hl_class" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">WeakRateInterpolator</a> interp(rows);</div>
+<div class="line"><span class="keyword">auto</span> isotopes = interp.available_isotopes();</div>
+<div class="ttc" id="aclassgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator_html"><div class="ttname"><a href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">gridfire::rates::weak::WeakRateInterpolator</a></div><div class="ttdoc">3D table interpolator for tabulated weak reaction data by isotope.</div><div class="ttdef"><b>Definition</b> weak_interpolator.h:29</div></div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<a id="ac04ae382defc51645c632db6ad3830d7" name="ac04ae382defc51645c632db6ad3830d7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac04ae382defc51645c632db6ad3830d7">&#9670;&#160;</a></span>get_rate_derivatives()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives.html">WeakRateDerivatives</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1InterpolationError.html">InterpolationError</a> &gt; gridfire::rates::weak::WeakRateInterpolator::get_rate_derivatives </td>
+          <td>(</td>
+          <td class="paramtype">uint16_t&#160;</td>
+          <td class="paramname"><em>A</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">uint8_t&#160;</td>
+          <td class="paramname"><em>Z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>t9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>log_rhoYe</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Finite-difference partial derivatives of the log10() fields. </p>
+<p>Uses central differences with small fixed (1e-6) perturbations in each variable (T9, log10(rho*Ye), mu_e) and returns arrays of d(log10(field))/d(var) for all fields. If any perturbed state falls outside the table, returns a BOUNDS_ERROR with per-axis bounds; if the isotope is unknown, returns UNKNOWN_SPECIES_ERROR.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">A</td><td>Mass number of the isotope. </td></tr>
+    <tr><td class="paramname">Z</td><td>Proton number of the isotope. </td></tr>
+    <tr><td class="paramname">t9</td><td>Temperature in GK (10^9 K). </td></tr>
+    <tr><td class="paramname">log_rhoYe</td><td>Log10 of rho*Ye (cgs density times electron fraction). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>expected&lt;WeakRateDerivatives, InterpolationError&gt;: derivative payload on success; otherwise an <a class="el" href="structgridfire_1_1rates_1_1weak_1_1InterpolationError.html" title="Interpolation error with optional per-axis bounds details.">InterpolationError</a> as described above. </dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keywordflow">if</span> (<span class="keyword">auto</span> d = interp.get_rate_derivatives(52, 26, 3.0, 6.0, 2.0); d) {</div>
+<div class="line">  <span class="comment">// use d-&gt;d_log_beta_minus[0..2], etc.</span></div>
+<div class="line">}</div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<a id="a730c8e7fe5218c5ce077531bc7924d79" name="a730c8e7fe5218c5ce077531bc7924d79"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a730c8e7fe5218c5ce077531bc7924d79">&#9670;&#160;</a></span>get_rates()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html">WeakRatePayload</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1InterpolationError.html">InterpolationError</a> &gt; gridfire::rates::weak::WeakRateInterpolator::get_rates </td>
+          <td>(</td>
+          <td class="paramtype">uint16_t&#160;</td>
+          <td class="paramname"><em>A</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">uint8_t&#160;</td>
+          <td class="paramname"><em>Z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>t9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>log_rhoYe</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Trilinear interpolation of weak-rate payload at a state. </p>
+<p>Interpolates the 6 log10() fields (rates and neutrino losses) at the given state for the requested isotope. If the isotope is unknown or the state lies outside the tabulated ranges, returns an error via std::expected with detailed bounds info.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">A</td><td>Mass number of the isotope. </td></tr>
+    <tr><td class="paramname">Z</td><td>Proton number of the isotope. </td></tr>
+    <tr><td class="paramname">t9</td><td>Temperature in GK (10^9 K). </td></tr>
+    <tr><td class="paramname">log_rhoYe</td><td>Log10 of rho*Ye (cgs density times electron fraction). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>expected&lt;WeakRatePayload, InterpolationError&gt;: payload on success; InterpolationError::UNKNOWN_SPECIES_ERROR if (A,Z) not present; or InterpolationError::BOUNDS_ERROR if any coordinate is outside the table (with per-axis bounds included). </dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keywordflow">if</span> (<span class="keyword">auto</span> res = interp.get_rates(52, 26, 3.0, 6.0, 2.0); res) {</div>
+<div class="line">  <span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html">WeakRatePayload</a>&amp; p = *res;</div>
+<div class="line">} <span class="keywordflow">else</span> {</div>
+<div class="line">  <span class="comment">// inspect res.error().type and optional bounds info</span></div>
+<div class="line">}</div>
+<div class="ttc" id="astructgridfire_1_1rates_1_1weak_1_1WeakRatePayload_html"><div class="ttname"><a href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html">gridfire::rates::weak::WeakRatePayload</a></div><div class="ttdoc">Interpolated weak-rate payload at a single state.</div><div class="ttdef"><b>Definition</b> weak_types.h:86</div></div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a2962864d8a6f8760a4228729838b6edb" name="a2962864d8a6f8760a4228729838b6edb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2962864d8a6f8760a4228729838b6edb">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::rates::weak::WeakRateInterpolator::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a7a01f956eccd3a0a90dd08984ca3f009" name="a7a01f956eccd3a0a90dd08984ca3f009"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7a01f956eccd3a0a90dd08984ca3f009">&#9670;&#160;</a></span>m_rate_table</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;uint32_t, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html">IsotopeGrid</a>&gt; gridfire::rates::weak::WeakRateInterpolator::m_rate_table</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Per-isotope grids over (T9, log10(rho*Ye), mu_e) with payloads at lattice nodes. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak__interpolator_8h.html">weak_interpolator.h</a></li>
+<li>src/lib/reaction/weak/<a class="el" href="weak__interpolator_8cpp.html">weak_interpolator.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
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diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1WeakReaction-members.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1WeakReaction-members.html
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakReaction Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a6e567323ca019eadcbb9dbb814ebeb0b">all_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a091d6d4aa59f788c97f9b5481f46f1b5">calculate_energy_generation_rate</a>(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#af515e3587a1050c4bc59657696be5f9b">calculate_energy_generation_rate</a>(const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#ac2d5366d4b5766413db34558dbce3cb3">calculate_log_rate_partial_deriv_wrt_T9</a>(double T9, double rho, double Ye, double mue, const fourdst::composition::Composition &amp;composition) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a05df0657efed55eb4262c7834d81400a">calculate_rate</a>(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a90ca346e2321516656b83d863416671e">calculate_rate</a>(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aa28f151d4ce14e0d6fcbecb07d03cd28">calculate_rate</a>(T T9, T rho, T Ye, T mue, const std::vector&lt; T &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#ac10e1451d20876f6eab199e127f213c7">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a745b161968f37873b5d40fe6bf9d2118">contains</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a957b5bfe70e536290ef677a7c5b6643f">contains_product</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a98095e6536d9a6434c5955f4c169d505">contains_reactant</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aeba08ed8204fc4999dc0324076d67d2a">countProductOccurrences</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#acfc3740ed0aa72986b2c1bc2666974d6">countReactantOccurrences</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a7f0d21c80fbbf94ead613e678d44b835">get_log_neutrino_loss_from_payload</a>(const WeakRatePayload &amp;payload) const</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a14555633289fc3822e927afca7401e49">get_log_rate_from_payload</a>(const WeakRatePayload &amp;payload) const</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a768eed406cc08057ed09e5daf5494650">getRateCoefficients</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aefc75b3149bee2da878177279ad375da">getWeakRateInterpolator</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#ad2ba6b584cb2df7c15633fca81ce6af1">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#ad01a15d95878c9edbf57cd9045c4413b">id</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a90b62d922d91832859516450cf8e3876">is_reverse</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a4f2bf61b35566e439ac8a48da265d215">m_atomic</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a2f0ee4c0d52db0f58781f90dd39dc0f7">m_constants</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a79877bd387bd891e602adff3f99cb4c5">m_id</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#adf203cbae7d7afcd274020b5210b426b">m_interpolator</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aee395d13ed3a515d5c1d69bedffca5de">m_product</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a2567545c89eb847a15909b02fa0f383e">m_product_a</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#ab1be1d3010ff539b8a911506734fd9cf">m_product_z</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a71ca233a081c7aed54ace061ea362231">m_products</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aeaceef054714e2a9667986406107ba3a">m_reactant</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a37dfb1d460e78e81a6def62e7217e6f8">m_reactant_a</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a3d1b52076e102d07acb7200a7ee99165">m_reactant_z</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a46c36a6e517fb00a2ac3cbb0f546a341">m_reactants</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a92c3590161c63c6ed4e7650d2b7beee3">m_type</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a1210917ca1727ea474bb606cf8279edb">num_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a5c60feacb0ac48b35323d9f688315316">product_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aed0ea28ed3ba96a9f86aa9db947ec01c">products</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#afedb724bf9f1c8fc91d853f2bedb10cb">qValue</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aae06ff559026e3ce242a42cdd888c5a0">reactant_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a1362d46630f30203027093e35883d1b1">reactants</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a8bf7dc26d9f1375625df99bceba08a44">stoichiometry</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a1f4acfdb39bb861aaee9f3f28cfc406e">stoichiometry</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aade329265a26bdc005c0793ba7a36ab2">type</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a222c0662bf5323037c9fdddfb929d4f7">WeakReaction</a>(const fourdst::atomic::Species &amp;species, WeakReactionType type, const WeakRateInterpolator &amp;interpolator)</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">gridfire::rates::weak::WeakReaction</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab1860df84843be70f97469761e11ab6a">~Reaction</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1rates_1_1weak_1_1WeakReaction-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakReaction Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Concrete Reaction representing a single weak process (beta±, e−/e+ capture).  
+ <a href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#details">More...</a></p>
+
+<p><code>#include &lt;weak.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::rates::weak::WeakReaction:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1rates_1_1weak_1_1WeakReaction__inherit__graph.svg" width="163" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::rates::weak::WeakReaction:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1rates_1_1weak_1_1WeakReaction__coll__graph.svg" width="100%" height="600"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html">AtomicWeakRate</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">CppAD atomic that wraps weak-rate interpolation for AD evaluation.  <a href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html">constants</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a222c0662bf5323037c9fdddfb929d4f7" id="r_a222c0662bf5323037c9fdddfb929d4f7"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a222c0662bf5323037c9fdddfb929d4f7">WeakReaction</a> (const fourdst::atomic::Species &amp;species, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a> <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aade329265a26bdc005c0793ba7a36ab2">type</a>, const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">WeakRateInterpolator</a> &amp;interpolator)</td></tr>
+<tr class="memdesc:a222c0662bf5323037c9fdddfb929d4f7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html" title="Concrete Reaction representing a single weak process (beta±, e−/e+ capture).">WeakReaction</a> for a specific weak channel and parent species.  <br /></td></tr>
+<tr class="separator:a222c0662bf5323037c9fdddfb929d4f7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a05df0657efed55eb4262c7834d81400a" id="r_a05df0657efed55eb4262c7834d81400a"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a05df0657efed55eb4262c7834d81400a">calculate_rate</a> (double <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755">T9</a>, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td></tr>
+<tr class="memdesc:a05df0657efed55eb4262c7834d81400a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Scalar weak reaction rate λ(T9, rho, Ye, μe) in 1/s.  <br /></td></tr>
+<tr class="separator:a05df0657efed55eb4262c7834d81400a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a90ca346e2321516656b83d863416671e" id="r_a90ca346e2321516656b83d863416671e"><td class="memItemLeft" align="right" valign="top">CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a90ca346e2321516656b83d863416671e">calculate_rate</a> (CppAD::AD&lt; double &gt; <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755">T9</a>, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td></tr>
+<tr class="memdesc:a90ca346e2321516656b83d863416671e"><td class="mdescLeft">&#160;</td><td class="mdescRight">AD-enabled weak reaction rate λ(T9, rho, Ye, μe) in 1/s.  <br /></td></tr>
+<tr class="separator:a90ca346e2321516656b83d863416671e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad01a15d95878c9edbf57cd9045c4413b" id="r_ad01a15d95878c9edbf57cd9045c4413b"><td class="memItemLeft" align="right" valign="top">std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#ad01a15d95878c9edbf57cd9045c4413b">id</a> () const override</td></tr>
+<tr class="memdesc:ad01a15d95878c9edbf57cd9045c4413b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Unique identifier string for the weak channel.  <br /></td></tr>
+<tr class="separator:ad01a15d95878c9edbf57cd9045c4413b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1362d46630f30203027093e35883d1b1" id="r_a1362d46630f30203027093e35883d1b1"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a1362d46630f30203027093e35883d1b1">reactants</a> () const override</td></tr>
+<tr class="memdesc:a1362d46630f30203027093e35883d1b1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reactants list (parent nuclide only).  <br /></td></tr>
+<tr class="separator:a1362d46630f30203027093e35883d1b1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aed0ea28ed3ba96a9f86aa9db947ec01c" id="r_aed0ea28ed3ba96a9f86aa9db947ec01c"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aed0ea28ed3ba96a9f86aa9db947ec01c">products</a> () const override</td></tr>
+<tr class="memdesc:aed0ea28ed3ba96a9f86aa9db947ec01c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Products list (daughter nuclide only).  <br /></td></tr>
+<tr class="separator:aed0ea28ed3ba96a9f86aa9db947ec01c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a745b161968f37873b5d40fe6bf9d2118" id="r_a745b161968f37873b5d40fe6bf9d2118"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a745b161968f37873b5d40fe6bf9d2118">contains</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a745b161968f37873b5d40fe6bf9d2118"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if a species participates in this weak reaction.  <br /></td></tr>
+<tr class="separator:a745b161968f37873b5d40fe6bf9d2118"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a98095e6536d9a6434c5955f4c169d505" id="r_a98095e6536d9a6434c5955f4c169d505"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a98095e6536d9a6434c5955f4c169d505">contains_reactant</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a98095e6536d9a6434c5955f4c169d505"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if a species is the reactant (parent).  <br /></td></tr>
+<tr class="separator:a98095e6536d9a6434c5955f4c169d505"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a957b5bfe70e536290ef677a7c5b6643f" id="r_a957b5bfe70e536290ef677a7c5b6643f"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a957b5bfe70e536290ef677a7c5b6643f">contains_product</a> (const fourdst::atomic::Species &amp;species) const override</td></tr>
+<tr class="memdesc:a957b5bfe70e536290ef677a7c5b6643f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if a species is the product (daughter).  <br /></td></tr>
+<tr class="separator:a957b5bfe70e536290ef677a7c5b6643f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6e567323ca019eadcbb9dbb814ebeb0b" id="r_a6e567323ca019eadcbb9dbb814ebeb0b"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a6e567323ca019eadcbb9dbb814ebeb0b">all_species</a> () const override</td></tr>
+<tr class="memdesc:a6e567323ca019eadcbb9dbb814ebeb0b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of both parent and daughter species.  <br /></td></tr>
+<tr class="separator:a6e567323ca019eadcbb9dbb814ebeb0b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aae06ff559026e3ce242a42cdd888c5a0" id="r_aae06ff559026e3ce242a42cdd888c5a0"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aae06ff559026e3ce242a42cdd888c5a0">reactant_species</a> () const override</td></tr>
+<tr class="memdesc:aae06ff559026e3ce242a42cdd888c5a0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Singleton set containing only the parent species.  <br /></td></tr>
+<tr class="separator:aae06ff559026e3ce242a42cdd888c5a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5c60feacb0ac48b35323d9f688315316" id="r_a5c60feacb0ac48b35323d9f688315316"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a5c60feacb0ac48b35323d9f688315316">product_species</a> () const override</td></tr>
+<tr class="memdesc:a5c60feacb0ac48b35323d9f688315316"><td class="mdescLeft">&#160;</td><td class="mdescRight">Singleton set containing only the daughter species.  <br /></td></tr>
+<tr class="separator:a5c60feacb0ac48b35323d9f688315316"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a1210917ca1727ea474bb606cf8279edb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of unique species involved (always 2 for weak reactions).  <br /></td></tr>
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
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+<tr class="memitem:a79877bd387bd891e602adff3f99cb4c5" id="r_a79877bd387bd891e602adff3f99cb4c5"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a79877bd387bd891e602adff3f99cb4c5">m_id</a></td></tr>
+<tr class="separator:a79877bd387bd891e602adff3f99cb4c5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a92c3590161c63c6ed4e7650d2b7beee3" id="r_a92c3590161c63c6ed4e7650d2b7beee3"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a92c3590161c63c6ed4e7650d2b7beee3">m_type</a></td></tr>
+<tr class="separator:a92c3590161c63c6ed4e7650d2b7beee3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adf203cbae7d7afcd274020b5210b426b" id="r_adf203cbae7d7afcd274020b5210b426b"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">WeakRateInterpolator</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#adf203cbae7d7afcd274020b5210b426b">m_interpolator</a></td></tr>
+<tr class="separator:adf203cbae7d7afcd274020b5210b426b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4f2bf61b35566e439ac8a48da265d215" id="r_a4f2bf61b35566e439ac8a48da265d215"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html">AtomicWeakRate</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a4f2bf61b35566e439ac8a48da265d215">m_atomic</a></td></tr>
+<tr class="separator:a4f2bf61b35566e439ac8a48da265d215"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Concrete Reaction representing a single weak process (beta±, e−/e+ capture). </p>
+<p>Wraps interpolation logic for tabulated weak rates and provides both scalar and AD interfaces for rate and energy generation. The reactants/products are the parent/daughter nuclei of the weak process.</p>
+<p>the product nucleus is resolved from (A,Z) and channel via simple charge-changing rules (β−: Z+1; β+: Z−1; e− capture: Z−1; e+ capture: Z+1). The reaction ID is formatted like "Parent(channel)Product" with ν/ν̄ decorations, and an internal CppAD atomic (<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html" title="CppAD atomic that wraps weak-rate interpolation for AD evaluation.">AtomicWeakRate</a>) is prepared for AD energy calculations. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a222c0662bf5323037c9fdddfb929d4f7" name="a222c0662bf5323037c9fdddfb929d4f7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a222c0662bf5323037c9fdddfb929d4f7">&#9670;&#160;</a></span>WeakReaction()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::rates::weak::WeakReaction::WeakReaction </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a>&#160;</td>
+          <td class="paramname"><em>type</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">WeakRateInterpolator</a> &amp;&#160;</td>
+          <td class="paramname"><em>interpolator</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct a <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html" title="Concrete Reaction representing a single weak process (beta±, e−/e+ capture).">WeakReaction</a> for a specific weak channel and parent species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>Parent nuclide undergoing the weak process. </td></tr>
+    <tr><td class="paramname">type</td><td>The weak reaction channel (beta−, beta+, e− capture, e+ capture). </td></tr>
+    <tr><td class="paramname">interpolator</td><td>Reference to a <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html" title="3D table interpolator for tabulated weak reaction data by isotope.">WeakRateInterpolator</a> providing tabulated data. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section pre"><dt>Precondition</dt><dd>The product nuclide must be resolvable for the given (species, type). </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>Object is ready to compute rates using the provided interpolator. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the product species cannot be resolved for the channel (product resolution uses the charge-changing rules described above). </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a6e567323ca019eadcbb9dbb814ebeb0b" name="a6e567323ca019eadcbb9dbb814ebeb0b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6e567323ca019eadcbb9dbb814ebeb0b">&#9670;&#160;</a></span>all_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_set&lt; fourdst::atomic::Species &gt; gridfire::rates::weak::WeakReaction::all_species </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Set of both parent and daughter species. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#aa13cd9097229fcc99128d9286b8f17e6">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="af515e3587a1050c4bc59657696be5f9b" name="af515e3587a1050c4bc59657696be5f9b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af515e3587a1050c4bc59657696be5f9b">&#9670;&#160;</a></span>calculate_energy_generation_rate() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">CppAD::AD&lt; double &gt; gridfire::rates::weak::WeakReaction::calculate_energy_generation_rate </td>
+          <td>(</td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>index_to_species_map</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>AD-enabled net energy generation rate (MeV/s). </p>
+<p>Uses an internal CppAD atomic to compute two outputs at once: the rate λ and the neutrino loss ν_loss at (T9, log10(rho*Ye), μe). Returns λ · (Q − ν_loss). The atomic throws on interpolation failure.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If the atomic rate evaluation fails to interpolate. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Reimplemented from <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a4282f85c34d6db1994c07e7a40f66d80">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a091d6d4aa59f788c97f9b5481f46f1b5" name="a091d6d4aa59f788c97f9b5481f46f1b5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a091d6d4aa59f788c97f9b5481f46f1b5">&#9670;&#160;</a></span>calculate_energy_generation_rate() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::calculate_energy_generation_rate </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>index_to_species_map</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Net energy generation rate (MeV/s) for this weak reaction. </p>
+<p>Interpolates once to obtain both the log10(rate) and the appropriate log10(neutrino-loss) for the channel, converts to linear values, computes E_deposited = Q − ν_loss, and returns λ · E_deposited. Throws on interpolation failure.</p>
+<p>Channel mapping for neutrino-loss column:</p><ul>
+<li>β− decay and e+ capture: use log_antineutrino_loss_bd</li>
+<li>β+ decay and e− capture: use log_neutrino_loss_ec</li>
+</ul>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g cm^-3. </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction. </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential (MeV). </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector (unused for weak channels). </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Index-to-species map (unused for weak channels). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Energy generation rate in MeV/s. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>On interpolation failure. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keywordtype">double</span> eps = rxn.calculate_energy_generation_rate(3.0, 1e7, 0.5, 2.0, {}, {});</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Reimplemented from <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ae66b446c98add7e00a1d960f4e7c60dd">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="ac2d5366d4b5766413db34558dbce3cb3" name="ac2d5366d4b5766413db34558dbce3cb3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac2d5366d4b5766413db34558dbce3cb3">&#9670;&#160;</a></span>calculate_log_rate_partial_deriv_wrt_T9()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::calculate_log_rate_partial_deriv_wrt_T9 </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>composition</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logarithmic temperature sensitivity of the rate at the given state. </p>
+<p>Implementation status: requests derivative tables from the interpolator and throws on failure; otherwise the function is not yet implemented and does not return a value. Avoid calling until implemented.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density in g cm^-3. </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction. </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential (MeV). </td></tr>
+    <tr><td class="paramname">composition</td><td>Composition context (not used by weak channels presently). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>d ln λ / d ln T9. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>On interpolation failure. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#aa2b615e764bb005e526ca9327319c735">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a90ca346e2321516656b83d863416671e" name="a90ca346e2321516656b83d863416671e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a90ca346e2321516656b83d863416671e">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[1/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">CppAD::AD&lt; double &gt; gridfire::rates::weak::WeakReaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>index_to_species_map</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>AD-enabled weak reaction rate λ(T9, rho, Ye, μe) in 1/s. </p>
+<p>Current implementation returns 0.0. AD support is provided for the energy-generation overload below using an internal CppAD atomic that evaluates both the rate and neutrino loss consistently. A future implementation may mirror that atomic here and return the AD rate.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK (AD type). </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density (g cm^-3, AD type). </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction (AD type). </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential (MeV, AD type). </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector (unused for weak channels). </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Index-to-species map (unused for weak channels). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Reaction rate (1/s) as CppAD::AD&lt;double&gt; (currently 0.0). </dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keyword">using </span>AD = CppAD::AD&lt;double&gt;;</div>
+<div class="line">AD lambda_ad = rxn.calculate_rate(AD(3.0), AD(1e7), AD(0.5), AD(2.0), {}, {});</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#af8303d67df61fc9e31ce054f0e8a3e14">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a05df0657efed55eb4262c7834d81400a" name="a05df0657efed55eb4262c7834d81400a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a05df0657efed55eb4262c7834d81400a">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[2/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>index_to_species_map</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Scalar weak reaction rate λ(T9, rho, Ye, μe) in 1/s. </p>
+<p>Performs a single interpolation of the weak-rate tables at (T9, log10(rho*Ye), μe). If the selected log10(rate) is ≤ sentinel (-60), returns 0; otherwise returns 10^{log10(rate)}. On interpolation failure, throws with a message including (A,Z) and the state point.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK (1e9 K). </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density (g cm^-3). </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction. </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential (MeV). </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector (unused for weak channels). </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Index-to-species map (unused for weak channels). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Reaction rate (1/s). </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>On interpolation failure. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keywordtype">double</span> lambda = rxn.calculate_rate(2.0, 1e8, 0.4, 1.5, {}, {});</div>
+</div><!-- fragment --> </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a83c121480533593adfd68c4a67a649f1">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="aa28f151d4ce14e0d6fcbecb07d03cd28" name="aa28f151d4ce14e0d6fcbecb07d03cd28"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa28f151d4ce14e0d6fcbecb07d03cd28">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[3/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;IsArithmeticOrAD T&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">T gridfire::rates::weak::WeakReaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">T&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; T &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>index_to_species_map</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Internal unified implementation for scalar/AD rate evaluation. </p>
+<dl class="tparams"><dt>Template Parameters</dt><dd>
+  <table class="tparams">
+    <tr><td class="paramname">T</td><td>double or CppAD::AD&lt;double&gt;. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9,rho,Ye,mue</td><td>Thermodynamic state. </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector (unused for weak channels). </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Index-to-species map (unused for weak channels). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Reaction rate (1/s) as T. For double, performs table interpolation and returns 0 when the tabulated log10(rate) ≤ sentinel; for AD, calls the atomic and returns the first output. </dd></dl>
+<dl class="section pre"><dt>Precondition</dt><dd>T9 &gt; 0, rho &gt; 0, 0 &lt; Ye &lt;= 1. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>No persistent state is modified. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If interpolation fails (double path) or the atomic fails (AD path). </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="ac10e1451d20876f6eab199e127f213c7" name="ac10e1451d20876f6eab199e127f213c7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac10e1451d20876f6eab199e127f213c7">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &gt; gridfire::rates::weak::WeakReaction::clone </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Polymorphic deep copy. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab95ce7fb022a9432bdc77f14679221ee">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a745b161968f37873b5d40fe6bf9d2118" name="a745b161968f37873b5d40fe6bf9d2118"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a745b161968f37873b5d40fe6bf9d2118">&#9670;&#160;</a></span>contains()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::rates::weak::WeakReaction::contains </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Check if a species participates in this weak reaction. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a768db057d358240d4825c21869af0792">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a957b5bfe70e536290ef677a7c5b6643f" name="a957b5bfe70e536290ef677a7c5b6643f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a957b5bfe70e536290ef677a7c5b6643f">&#9670;&#160;</a></span>contains_product()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::rates::weak::WeakReaction::contains_product </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Check if a species is the product (daughter). </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a2708d2e8f42159df6605a5948b13c4c5">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a98095e6536d9a6434c5955f4c169d505" name="a98095e6536d9a6434c5955f4c169d505"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a98095e6536d9a6434c5955f4c169d505">&#9670;&#160;</a></span>contains_reactant()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::rates::weak::WeakReaction::contains_reactant </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Check if a species is the reactant (parent). </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab28bf4f9417ecabcc8350bae449fedd5">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="aeba08ed8204fc4999dc0324076d67d2a" name="aeba08ed8204fc4999dc0324076d67d2a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aeba08ed8204fc4999dc0324076d67d2a">&#9670;&#160;</a></span>countProductOccurrences()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::rates::weak::WeakReaction::countProductOccurrences </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a62fc82b29bacc10cfbceaa1571b14525">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="acfc3740ed0aa72986b2c1bc2666974d6" name="acfc3740ed0aa72986b2c1bc2666974d6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acfc3740ed0aa72986b2c1bc2666974d6">&#9670;&#160;</a></span>countReactantOccurrences()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::rates::weak::WeakReaction::countReactantOccurrences </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a036773e4dc917facbf2308dbbe853633">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a7f0d21c80fbbf94ead613e678d44b835" name="a7f0d21c80fbbf94ead613e678d44b835"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7f0d21c80fbbf94ead613e678d44b835">&#9670;&#160;</a></span>get_log_neutrino_loss_from_payload()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::get_log_neutrino_loss_from_payload </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html">WeakRatePayload</a> &amp;&#160;</td>
+          <td class="paramname"><em>payload</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Extract the channel-specific log10(neutrino loss) from a payload. Mapping: β−/e+ capture→log_antineutrino_loss_bd; β+/e− capture→log_neutrino_loss_ec. </p>
+
+</div>
+</div>
+<a id="a14555633289fc3822e927afca7401e49" name="a14555633289fc3822e927afca7401e49"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a14555633289fc3822e927afca7401e49">&#9670;&#160;</a></span>get_log_rate_from_payload()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::get_log_rate_from_payload </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html">WeakRatePayload</a> &amp;&#160;</td>
+          <td class="paramname"><em>payload</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Extract the channel-specific log10(rate) from an interpolated payload. Mapping: β−→log_beta_minus, β+→log_beta_plus, e− capture→log_electron_capture, e+ capture→log_positron_capture. </p>
+
+</div>
+</div>
+<a id="a768eed406cc08057ed09e5daf5494650" name="a768eed406cc08057ed09e5daf5494650"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a768eed406cc08057ed09e5daf5494650">&#9670;&#160;</a></span>getRateCoefficients()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::optional&lt; std::vector&lt; <a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">reaction::RateCoefficientSet</a> &gt; &gt; gridfire::rates::weak::WeakReaction::getRateCoefficients </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a6c51c30a0eec2f00c7d1f1c0be44cb0b">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="aefc75b3149bee2da878177279ad375da" name="aefc75b3149bee2da878177279ad375da"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aefc75b3149bee2da878177279ad375da">&#9670;&#160;</a></span>getWeakRateInterpolator()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">WeakRateInterpolator</a> &amp; gridfire::rates::weak::WeakReaction::getWeakRateInterpolator </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Access the underlying rate interpolator used by this reaction. </p>
+
+</div>
+</div>
+<a id="ad2ba6b584cb2df7c15633fca81ce6af1" name="ad2ba6b584cb2df7c15633fca81ce6af1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad2ba6b584cb2df7c15633fca81ce6af1">&#9670;&#160;</a></span>hash()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">uint64_t gridfire::rates::weak::WeakReaction::hash </td>
+          <td>(</td>
+          <td class="paramtype">uint64_t&#160;</td>
+          <td class="paramname"><em>seed</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Content-based 64-bit hash for this reaction. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a7ba8c18cd5445aa3499a6fd351183f7a">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="ad01a15d95878c9edbf57cd9045c4413b" name="ad01a15d95878c9edbf57cd9045c4413b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad01a15d95878c9edbf57cd9045c4413b">&#9670;&#160;</a></span>id()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string_view gridfire::rates::weak::WeakReaction::id </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Unique identifier string for the weak channel. </p>
+<dl class="section return"><dt>Returns</dt><dd>A stable string view (e.g., "Fe52(e-,ν)Mn52"). </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a94b92308b9619ec20c690e55157786ba">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a90b62d922d91832859516450cf8e3876" name="a90b62d922d91832859516450cf8e3876"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a90b62d922d91832859516450cf8e3876">&#9670;&#160;</a></span>is_reverse()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::rates::weak::WeakReaction::is_reverse </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Weak reactions are parameterized in the forward sense (never reverse). </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a3906a668410e02239f9031b5fc580214">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a1210917ca1727ea474bb606cf8279edb" name="a1210917ca1727ea474bb606cf8279edb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1210917ca1727ea474bb606cf8279edb">&#9670;&#160;</a></span>num_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::rates::weak::WeakReaction::num_species </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of unique species involved (always 2 for weak reactions). </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ae2a1b0395ac127c792a8049cd0bcc249">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a5c60feacb0ac48b35323d9f688315316" name="a5c60feacb0ac48b35323d9f688315316"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5c60feacb0ac48b35323d9f688315316">&#9670;&#160;</a></span>product_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_set&lt; fourdst::atomic::Species &gt; gridfire::rates::weak::WeakReaction::product_species </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Singleton set containing only the daughter species. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a0d16572ae2b664374d32ee6c4e22123a">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="aed0ea28ed3ba96a9f86aa9db947ec01c" name="aed0ea28ed3ba96a9f86aa9db947ec01c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aed0ea28ed3ba96a9f86aa9db947ec01c">&#9670;&#160;</a></span>products()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::rates::weak::WeakReaction::products </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Products list (daughter nuclide only). </p>
+<dl class="section return"><dt>Returns</dt><dd>Vector with the daughter species. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a3d7451045d8df41ea98b5e419e0e5ab0">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="afedb724bf9f1c8fc91d853f2bedb10cb" name="afedb724bf9f1c8fc91d853f2bedb10cb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afedb724bf9f1c8fc91d853f2bedb10cb">&#9670;&#160;</a></span>qValue()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::qValue </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Q-value (MeV) based on nuclear mass differences and channel. </p>
+<p>Computes Q = (M_parent − M_daughter) c^2 converted to MeV. For β+ decay subtract 2 m_e c^2, for e+ capture add 2 m_e c^2; for β− and e− capture it is just the nuclear mass difference. Neutrino rest mass is ignored. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="aae06ff559026e3ce242a42cdd888c5a0" name="aae06ff559026e3ce242a42cdd888c5a0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aae06ff559026e3ce242a42cdd888c5a0">&#9670;&#160;</a></span>reactant_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_set&lt; fourdst::atomic::Species &gt; gridfire::rates::weak::WeakReaction::reactant_species </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Singleton set containing only the parent species. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a82c14096308cdc9126ab6d9667febcd2">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a1362d46630f30203027093e35883d1b1" name="a1362d46630f30203027093e35883d1b1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1362d46630f30203027093e35883d1b1">&#9670;&#160;</a></span>reactants()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::rates::weak::WeakReaction::reactants </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reactants list (parent nuclide only). </p>
+<dl class="section return"><dt>Returns</dt><dd>Vector with the parent species. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ac7b08c61cdc97268b9442afec4d08dad">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a8bf7dc26d9f1375625df99bceba08a44" name="a8bf7dc26d9f1375625df99bceba08a44"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8bf7dc26d9f1375625df99bceba08a44">&#9670;&#160;</a></span>stoichiometry() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt; fourdst::atomic::Species, int &gt; gridfire::rates::weak::WeakReaction::stoichiometry </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Full stoichiometry map: parent -1, daughter +1. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ad49f4cad024db72c966d949c75f1ce4d">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a1f4acfdb39bb861aaee9f3f28cfc406e" name="a1f4acfdb39bb861aaee9f3f28cfc406e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1f4acfdb39bb861aaee9f3f28cfc406e">&#9670;&#160;</a></span>stoichiometry() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::rates::weak::WeakReaction::stoichiometry </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Stoichiometric coefficient for a species: -1 (parent), +1 (daughter), 0 otherwise. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab7888b57507d6d27de6e5fcaea40fff5">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="aade329265a26bdc005c0793ba7a36ab2" name="aade329265a26bdc005c0793ba7a36ab2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aade329265a26bdc005c0793ba7a36ab2">&#9670;&#160;</a></span>type()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">reaction::ReactionType</a> gridfire::rates::weak::WeakReaction::type </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reaction type tag for runtime dispatch. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a7f2590eee9f0dfb7b73cd92170a844b7">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a4f2bf61b35566e439ac8a48da265d215" name="a4f2bf61b35566e439ac8a48da265d215"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4f2bf61b35566e439ac8a48da265d215">&#9670;&#160;</a></span>m_atomic</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html">AtomicWeakRate</a> gridfire::rates::weak::WeakReaction::m_atomic</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a2f0ee4c0d52db0f58781f90dd39dc0f7" name="a2f0ee4c0d52db0f58781f90dd39dc0f7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2f0ee4c0d52db0f58781f90dd39dc0f7">&#9670;&#160;</a></span>m_constants</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html">constants</a> gridfire::rates::weak::WeakReaction::m_constants</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a79877bd387bd891e602adff3f99cb4c5" name="a79877bd387bd891e602adff3f99cb4c5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a79877bd387bd891e602adff3f99cb4c5">&#9670;&#160;</a></span>m_id</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::rates::weak::WeakReaction::m_id</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="adf203cbae7d7afcd274020b5210b426b" name="adf203cbae7d7afcd274020b5210b426b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adf203cbae7d7afcd274020b5210b426b">&#9670;&#160;</a></span>m_interpolator</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">WeakRateInterpolator</a>&amp; gridfire::rates::weak::WeakReaction::m_interpolator</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aee395d13ed3a515d5c1d69bedffca5de" name="aee395d13ed3a515d5c1d69bedffca5de"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aee395d13ed3a515d5c1d69bedffca5de">&#9670;&#160;</a></span>m_product</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::atomic::Species gridfire::rates::weak::WeakReaction::m_product</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a2567545c89eb847a15909b02fa0f383e" name="a2567545c89eb847a15909b02fa0f383e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2567545c89eb847a15909b02fa0f383e">&#9670;&#160;</a></span>m_product_a</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::rates::weak::WeakReaction::m_product_a</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab1be1d3010ff539b8a911506734fd9cf" name="ab1be1d3010ff539b8a911506734fd9cf"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab1be1d3010ff539b8a911506734fd9cf">&#9670;&#160;</a></span>m_product_z</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::rates::weak::WeakReaction::m_product_z</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a71ca233a081c7aed54ace061ea362231" name="a71ca233a081c7aed54ace061ea362231"></a>
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+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakReactionMap Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html">gridfire::rates::weak::WeakReactionMap</a>, including all inherited members.</p>
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakReactionMap Class Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Index of available weak reactions keyed by species.  
+ <a href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html#details">More...</a></p>
+
+<p><code>#include &lt;weak.h&gt;</code></p>
+<div class="dynheader">
+Collaboration diagram for gridfire::rates::weak::WeakReactionMap:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap__coll__graph.svg" width="100%" height="386"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:aecc8c1b92d63da87827879ad5330c11e" id="r_aecc8c1b92d63da87827879ad5330c11e"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html#aecc8c1b92d63da87827879ad5330c11e">WeakReactionMap</a> ()</td></tr>
+<tr class="memdesc:aecc8c1b92d63da87827879ad5330c11e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct the map by loading all weak reaction entries.  <br /></td></tr>
+<tr class="separator:aecc8c1b92d63da87827879ad5330c11e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a73cc5a9d4a236091bbb40f22ed66b2f1" id="r_a73cc5a9d4a236091bbb40f22ed66b2f1"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html#a73cc5a9d4a236091bbb40f22ed66b2f1">~WeakReactionMap</a> ()=default</td></tr>
+<tr class="separator:a73cc5a9d4a236091bbb40f22ed66b2f1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9ab9f6f64455eb46172ebda5e8cc3ec5" id="r_a9ab9f6f64455eb46172ebda5e8cc3ec5"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">WeakReactionEntry</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html#a9ab9f6f64455eb46172ebda5e8cc3ec5">get_all_reactions</a> () const</td></tr>
+<tr class="memdesc:a9ab9f6f64455eb46172ebda5e8cc3ec5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Return a flat list of all weak reaction entries.  <br /></td></tr>
+<tr class="separator:a9ab9f6f64455eb46172ebda5e8cc3ec5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a290da6766a6d3094a5aae8b7cbcd0d70" id="r_a290da6766a6d3094a5aae8b7cbcd0d70"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::vector&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">WeakReactionEntry</a> &gt;, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550">WeakMapError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html#a290da6766a6d3094a5aae8b7cbcd0d70">get_species_reactions</a> (const fourdst::atomic::Species &amp;species) const</td></tr>
+<tr class="memdesc:a290da6766a6d3094a5aae8b7cbcd0d70"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get all weak reaction entries for a given species.  <br /></td></tr>
+<tr class="separator:a290da6766a6d3094a5aae8b7cbcd0d70"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad7345da84824495fb21c969c1a9c80f5" id="r_ad7345da84824495fb21c969c1a9c80f5"><td class="memItemLeft" align="right" valign="top">std::expected&lt; std::vector&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">WeakReactionEntry</a> &gt;, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550">WeakMapError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html#ad7345da84824495fb21c969c1a9c80f5">get_species_reactions</a> (const std::string &amp;species_name) const</td></tr>
+<tr class="memdesc:ad7345da84824495fb21c969c1a9c80f5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Get all weak reaction entries for a given species by name.  <br /></td></tr>
+<tr class="separator:ad7345da84824495fb21c969c1a9c80f5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a8169adef9b4b3c7552c7a8fdc945cf6f" id="r_a8169adef9b4b3c7552c7a8fdc945cf6f"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; fourdst::atomic::Species, std::vector&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">WeakReactionEntry</a> &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html#a8169adef9b4b3c7552c7a8fdc945cf6f">m_weak_network</a></td></tr>
+<tr class="separator:a8169adef9b4b3c7552c7a8fdc945cf6f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Index of available weak reactions keyed by species. </p>
+<p>Builds an in-memory map from the compiled weak-rate tables and provides simple query helpers to retrieve all weak reactions or those that involve a particular nuclide.</p>
+<p>Implementation summary: the constructor iterates over UNIFIED_WEAK_DATA and inserts entries keyed by the parent Species. For each channel (β−, β+, e−-capture, e+-capture), if the tabulated log10(rate) is above the sentinel (-60), a <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html" title="A single weak-reaction data point (type, state, and log values).">WeakReactionEntry</a> is pushed containing the grids t9, log10(rho*Ye), mu_e, the log10(rate), and the corresponding log10(neutrino loss) column. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="aecc8c1b92d63da87827879ad5330c11e" name="aecc8c1b92d63da87827879ad5330c11e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aecc8c1b92d63da87827879ad5330c11e">&#9670;&#160;</a></span>WeakReactionMap()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::rates::weak::WeakReactionMap::WeakReactionMap </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Construct the map by loading all weak reaction entries. </p>
+<dl class="section post"><dt>Postcondition</dt><dd>All valid reactions from the compiled data are available via <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html#a9ab9f6f64455eb46172ebda5e8cc3ec5" title="Return a flat list of all weak reaction entries.">get_all_reactions()</a> and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html#a290da6766a6d3094a5aae8b7cbcd0d70" title="Get all weak reaction entries for a given species.">get_species_reactions()</a>. Implementation: iterates UNIFIED_WEAK_DATA, filters any log(rate) &lt;= -60, and groups entries by parent Species. </dd></dl>
+
+</div>
+</div>
+<a id="a73cc5a9d4a236091bbb40f22ed66b2f1" name="a73cc5a9d4a236091bbb40f22ed66b2f1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a73cc5a9d4a236091bbb40f22ed66b2f1">&#9670;&#160;</a></span>~WeakReactionMap()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::rates::weak::WeakReactionMap::~WeakReactionMap </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a9ab9f6f64455eb46172ebda5e8cc3ec5" name="a9ab9f6f64455eb46172ebda5e8cc3ec5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9ab9f6f64455eb46172ebda5e8cc3ec5">&#9670;&#160;</a></span>get_all_reactions()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">WeakReactionEntry</a> &gt; gridfire::rates::weak::WeakReactionMap::get_all_reactions </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Return a flat list of all weak reaction entries. </p>
+<dl class="section return"><dt>Returns</dt><dd>Vector of <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html" title="A single weak-reaction data point (type, state, and log values).">WeakReactionEntry</a> records. </dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><a class="code hl_class" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html">WeakReactionMap</a> map;</div>
+<div class="line"><span class="keyword">auto</span> all = map.<a class="code hl_function" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html#a9ab9f6f64455eb46172ebda5e8cc3ec5">get_all_reactions</a>();</div>
+<div class="line"><span class="comment">// iterate or group as needed</span></div>
+<div class="ttc" id="aclassgridfire_1_1rates_1_1weak_1_1WeakReactionMap_html"><div class="ttname"><a href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html">gridfire::rates::weak::WeakReactionMap</a></div><div class="ttdoc">Index of available weak reactions keyed by species.</div><div class="ttdef"><b>Definition</b> weak.h:41</div></div>
+<div class="ttc" id="aclassgridfire_1_1rates_1_1weak_1_1WeakReactionMap_html_a9ab9f6f64455eb46172ebda5e8cc3ec5"><div class="ttname"><a href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html#a9ab9f6f64455eb46172ebda5e8cc3ec5">gridfire::rates::weak::WeakReactionMap::get_all_reactions</a></div><div class="ttdeci">std::vector&lt; WeakReactionEntry &gt; get_all_reactions() const</div><div class="ttdoc">Return a flat list of all weak reaction entries.</div><div class="ttdef"><b>Definition</b> weak.cpp:166</div></div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<a id="a290da6766a6d3094a5aae8b7cbcd0d70" name="a290da6766a6d3094a5aae8b7cbcd0d70"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a290da6766a6d3094a5aae8b7cbcd0d70">&#9670;&#160;</a></span>get_species_reactions() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; std::vector&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">WeakReactionEntry</a> &gt;, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550">WeakMapError</a> &gt; gridfire::rates::weak::WeakReactionMap::get_species_reactions </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Get all weak reaction entries for a given species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>Nuclide to query (A,Z). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>expected&lt;vector&lt;WeakReactionEntry&gt;, WeakMapError&gt; containing reactions on success or SPECIES_NOT_FOUND on failure. </dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keyword">using </span>fourdst::atomic::Species;</div>
+<div class="line"><a class="code hl_class" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html">WeakReactionMap</a> map;</div>
+<div class="line">Species fe52 = fourdst::atomic::az_to_species(52, 26);</div>
+<div class="line"><span class="keywordflow">if</span> (<span class="keyword">auto</span> res = map.<a class="code hl_function" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html#a290da6766a6d3094a5aae8b7cbcd0d70">get_species_reactions</a>(fe52); res) {</div>
+<div class="line">    <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>&amp; e : *res) { } <span class="comment">// use e</span></div>
+<div class="line">} <span class="keywordflow">else</span> {</div>
+<div class="line">    <span class="comment">// handle WeakMapError::SPECIES_NOT_FOUND</span></div>
+<div class="line">}</div>
+<div class="ttc" id="aclassgridfire_1_1rates_1_1weak_1_1WeakReactionMap_html_a290da6766a6d3094a5aae8b7cbcd0d70"><div class="ttname"><a href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html#a290da6766a6d3094a5aae8b7cbcd0d70">gridfire::rates::weak::WeakReactionMap::get_species_reactions</a></div><div class="ttdeci">std::expected&lt; std::vector&lt; WeakReactionEntry &gt;, WeakMapError &gt; get_species_reactions(const fourdst::atomic::Species &amp;species) const</div><div class="ttdoc">Get all weak reaction entries for a given species.</div><div class="ttdef"><b>Definition</b> weak.cpp:174</div></div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<a id="ad7345da84824495fb21c969c1a9c80f5" name="ad7345da84824495fb21c969c1a9c80f5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad7345da84824495fb21c969c1a9c80f5">&#9670;&#160;</a></span>get_species_reactions() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::expected&lt; std::vector&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">WeakReactionEntry</a> &gt;, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550">WeakMapError</a> &gt; gridfire::rates::weak::WeakReactionMap::get_species_reactions </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>species_name</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Get all weak reaction entries for a given species by name. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species_name</td><td>Symbolic name (e.g., "Fe52"). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>expected&lt;vector&lt;WeakReactionEntry&gt;, WeakMapError&gt; containing reactions on success or SPECIES_NOT_FOUND on failure. </dd></dl>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><a class="code hl_class" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html">WeakReactionMap</a> map;</div>
+<div class="line"><span class="keywordflow">if</span> (<span class="keyword">auto</span> res = map.<a class="code hl_function" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html#a290da6766a6d3094a5aae8b7cbcd0d70">get_species_reactions</a>(<span class="stringliteral">&quot;Fe52&quot;</span>); res) {</div>
+<div class="line">    <span class="comment">// use *res</span></div>
+<div class="line">}</div>
+</div><!-- fragment --> </dd></dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a8169adef9b4b3c7552c7a8fdc945cf6f" name="a8169adef9b4b3c7552c7a8fdc945cf6f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8169adef9b4b3c7552c7a8fdc945cf6f">&#9670;&#160;</a></span>m_weak_network</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;fourdst::atomic::Species, std::vector&lt;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">WeakReactionEntry</a>&gt; &gt; gridfire::rates::weak::WeakReactionMap::m_weak_network</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak_8h.html">weak.h</a></li>
+<li>src/lib/reaction/weak/<a class="el" href="weak_8cpp.html">weak.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
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+  <ul>
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diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate-members.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate-members.html
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakReaction::AtomicWeakRate Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#a46d76ca50ee00198a9f4a873c6ceb874">AtomicWeakRate</a>(const WeakRateInterpolator &amp;interpolator, const size_t a, const size_t z, const WeakReactionType type)</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#a976a2ef2e58439429c1a6e94c27f4662">for_sparse_jac</a>(size_t q, const CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;r, CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;s) override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#ae4c3bb00eafddb923be7ba4c3b6a25ff">for_sparse_jac</a>(size_t q, const CppAD::vector&lt; bool &gt; &amp;r, CppAD::vector&lt; bool &gt; &amp;s, const CppAD::vector&lt; double &gt; &amp;x) override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#ab4f12e8da29d4d158fb0adf2db31b4bb">forward</a>(size_t p, size_t q, const CppAD::vector&lt; bool &gt; &amp;vx, CppAD::vector&lt; bool &gt; &amp;vy, const CppAD::vector&lt; double &gt; &amp;tx, CppAD::vector&lt; double &gt; &amp;ty) override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#a0beb567afdecd85e336b493ff85326bd">m_a</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#a874efa5a57427c8afecd0375094da6e9">m_interpolator</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#ae78d2a9b20c22a6ad624f4d968cbf639">m_type</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#a292dfe5fdfd3b90a36906f5f609a4c1c">m_z</a></td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#ae9d61bdda761da89733408c232d7220e">rev_sparse_jac</a>(size_t q, const CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;rt, CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;st) override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#a9f2681d58e10b6b740b4588efbce5ae5">rev_sparse_jac</a>(size_t q, const CppAD::vector&lt; bool &gt; &amp;rt, CppAD::vector&lt; bool &gt; &amp;st, const CppAD::vector&lt; double &gt; &amp;x) override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#aad13654ea15547c2c95035c3b7937d58">reverse</a>(size_t q, const CppAD::vector&lt; double &gt; &amp;tx, const CppAD::vector&lt; double &gt; &amp;ty, CppAD::vector&lt; double &gt; &amp;px, const CppAD::vector&lt; double &gt; &amp;py) override</td><td class="entry"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></td><td class="entry"></td></tr>
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diff --git a/docs/html/classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html b/docs/html/classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
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+<!-- iframe showing the search results (closed by default) -->
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+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakReaction::AtomicWeakRate Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>CppAD atomic that wraps weak-rate interpolation for AD evaluation.  
+ <a href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#details">More...</a></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::rates::weak::WeakReaction::AtomicWeakRate:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate__inherit__graph.svg" width="254" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::rates::weak::WeakReaction::AtomicWeakRate:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate__coll__graph.svg" width="603" height="594"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a46d76ca50ee00198a9f4a873c6ceb874" id="r_a46d76ca50ee00198a9f4a873c6ceb874"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#a46d76ca50ee00198a9f4a873c6ceb874">AtomicWeakRate</a> (const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">WeakRateInterpolator</a> &amp;interpolator, const size_t a, const size_t z, const <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a> <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aade329265a26bdc005c0793ba7a36ab2">type</a>)</td></tr>
+<tr class="memdesc:a46d76ca50ee00198a9f4a873c6ceb874"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct the atomic operation for a specific (A,Z) and channel.  <br /></td></tr>
+<tr class="separator:a46d76ca50ee00198a9f4a873c6ceb874"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab4f12e8da29d4d158fb0adf2db31b4bb" id="r_ab4f12e8da29d4d158fb0adf2db31b4bb"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#ab4f12e8da29d4d158fb0adf2db31b4bb">forward</a> (size_t p, size_t q, const CppAD::vector&lt; bool &gt; &amp;vx, CppAD::vector&lt; bool &gt; &amp;vy, const CppAD::vector&lt; double &gt; &amp;tx, CppAD::vector&lt; double &gt; &amp;ty) override</td></tr>
+<tr class="memdesc:ab4f12e8da29d4d158fb0adf2db31b4bb"><td class="mdescLeft">&#160;</td><td class="mdescRight">Forward pass: compute rate and neutrino-loss values for AD. On failure to interpolate, throws a std::runtime_error with details; sets output sparsity such that both outputs depend on all inputs when any input is variable.  <br /></td></tr>
+<tr class="separator:ab4f12e8da29d4d158fb0adf2db31b4bb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aad13654ea15547c2c95035c3b7937d58" id="r_aad13654ea15547c2c95035c3b7937d58"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#aad13654ea15547c2c95035c3b7937d58">reverse</a> (size_t q, const CppAD::vector&lt; double &gt; &amp;tx, const CppAD::vector&lt; double &gt; &amp;ty, CppAD::vector&lt; double &gt; &amp;px, const CppAD::vector&lt; double &gt; &amp;py) override</td></tr>
+<tr class="memdesc:aad13654ea15547c2c95035c3b7937d58"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reverse pass: propagate adjoints using tabulated derivatives. Uses d log10 columns, converting to linear-scale derivatives via ln(10) scaling and chain rule with the forward-pass outputs.  <br /></td></tr>
+<tr class="separator:aad13654ea15547c2c95035c3b7937d58"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a976a2ef2e58439429c1a6e94c27f4662" id="r_a976a2ef2e58439429c1a6e94c27f4662"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#a976a2ef2e58439429c1a6e94c27f4662">for_sparse_jac</a> (size_t q, const CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;r, CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;s) override</td></tr>
+<tr class="memdesc:a976a2ef2e58439429c1a6e94c27f4662"><td class="mdescLeft">&#160;</td><td class="mdescRight">Forward-mode sparsity for Jacobian.  <br /></td></tr>
+<tr class="separator:a976a2ef2e58439429c1a6e94c27f4662"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae9d61bdda761da89733408c232d7220e" id="r_ae9d61bdda761da89733408c232d7220e"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#ae9d61bdda761da89733408c232d7220e">rev_sparse_jac</a> (size_t q, const CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;rt, CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;st) override</td></tr>
+<tr class="memdesc:ae9d61bdda761da89733408c232d7220e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reverse-mode sparsity for Jacobian.  <br /></td></tr>
+<tr class="separator:ae9d61bdda761da89733408c232d7220e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae4c3bb00eafddb923be7ba4c3b6a25ff" id="r_ae4c3bb00eafddb923be7ba4c3b6a25ff"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#ae4c3bb00eafddb923be7ba4c3b6a25ff">for_sparse_jac</a> (size_t q, const CppAD::vector&lt; bool &gt; &amp;r, CppAD::vector&lt; bool &gt; &amp;s, const CppAD::vector&lt; double &gt; &amp;x) override</td></tr>
+<tr class="separator:ae4c3bb00eafddb923be7ba4c3b6a25ff"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9f2681d58e10b6b740b4588efbce5ae5" id="r_a9f2681d58e10b6b740b4588efbce5ae5"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#a9f2681d58e10b6b740b4588efbce5ae5">rev_sparse_jac</a> (size_t q, const CppAD::vector&lt; bool &gt; &amp;rt, CppAD::vector&lt; bool &gt; &amp;st, const CppAD::vector&lt; double &gt; &amp;x) override</td></tr>
+<tr class="separator:a9f2681d58e10b6b740b4588efbce5ae5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a874efa5a57427c8afecd0375094da6e9" id="r_a874efa5a57427c8afecd0375094da6e9"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">WeakRateInterpolator</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#a874efa5a57427c8afecd0375094da6e9">m_interpolator</a></td></tr>
+<tr class="separator:a874efa5a57427c8afecd0375094da6e9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0beb567afdecd85e336b493ff85326bd" id="r_a0beb567afdecd85e336b493ff85326bd"><td class="memItemLeft" align="right" valign="top">const size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#a0beb567afdecd85e336b493ff85326bd">m_a</a></td></tr>
+<tr class="separator:a0beb567afdecd85e336b493ff85326bd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a292dfe5fdfd3b90a36906f5f609a4c1c" id="r_a292dfe5fdfd3b90a36906f5f609a4c1c"><td class="memItemLeft" align="right" valign="top">const size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#a292dfe5fdfd3b90a36906f5f609a4c1c">m_z</a></td></tr>
+<tr class="separator:a292dfe5fdfd3b90a36906f5f609a4c1c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae78d2a9b20c22a6ad624f4d968cbf639" id="r_ae78d2a9b20c22a6ad624f4d968cbf639"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#ae78d2a9b20c22a6ad624f4d968cbf639">m_type</a></td></tr>
+<tr class="separator:ae78d2a9b20c22a6ad624f4d968cbf639"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>CppAD atomic that wraps weak-rate interpolation for AD evaluation. </p>
+<p>Forward pass computes two outputs (λ, ν_loss) by interpolating the tables at the provided state; reverse pass uses derivative tables to backpropagate adjoints for all three inputs (T9, log10(rho*Ye), μe). Sparsity routines declare full dependence of both outputs on all inputs. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a46d76ca50ee00198a9f4a873c6ceb874" name="a46d76ca50ee00198a9f4a873c6ceb874"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a46d76ca50ee00198a9f4a873c6ceb874">&#9670;&#160;</a></span>AtomicWeakRate()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::rates::weak::WeakReaction::AtomicWeakRate::AtomicWeakRate </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">WeakRateInterpolator</a> &amp;&#160;</td>
+          <td class="paramname"><em>interpolator</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const size_t&#160;</td>
+          <td class="paramname"><em>a</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const size_t&#160;</td>
+          <td class="paramname"><em>z</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a>&#160;</td>
+          <td class="paramname"><em>type</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct the atomic operation for a specific (A,Z) and channel. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">interpolator</td><td>Rate source. </td></tr>
+    <tr><td class="paramname">a</td><td>Mass number A of the parent. </td></tr>
+    <tr><td class="paramname">z</td><td>Proton number Z of the parent. </td></tr>
+    <tr><td class="paramname">type</td><td>Weak channel. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ae4c3bb00eafddb923be7ba4c3b6a25ff" name="ae4c3bb00eafddb923be7ba4c3b6a25ff"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae4c3bb00eafddb923be7ba4c3b6a25ff">&#9670;&#160;</a></span>for_sparse_jac() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::rates::weak::WeakReaction::AtomicWeakRate::for_sparse_jac </td>
+          <td>(</td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>q</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; bool &gt; &amp;&#160;</td>
+          <td class="paramname"><em>r</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::vector&lt; bool &gt; &amp;&#160;</td>
+          <td class="paramname"><em>s</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>x</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a976a2ef2e58439429c1a6e94c27f4662" name="a976a2ef2e58439429c1a6e94c27f4662"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a976a2ef2e58439429c1a6e94c27f4662">&#9670;&#160;</a></span>for_sparse_jac() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::rates::weak::WeakReaction::AtomicWeakRate::for_sparse_jac </td>
+          <td>(</td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>q</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>r</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>s</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Forward-mode sparsity for Jacobian. </p>
+
+</div>
+</div>
+<a id="ab4f12e8da29d4d158fb0adf2db31b4bb" name="ab4f12e8da29d4d158fb0adf2db31b4bb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab4f12e8da29d4d158fb0adf2db31b4bb">&#9670;&#160;</a></span>forward()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::rates::weak::WeakReaction::AtomicWeakRate::forward </td>
+          <td>(</td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>p</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>q</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; bool &gt; &amp;&#160;</td>
+          <td class="paramname"><em>vx</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::vector&lt; bool &gt; &amp;&#160;</td>
+          <td class="paramname"><em>vy</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>tx</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>ty</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Forward pass: compute rate and neutrino-loss values for AD. On failure to interpolate, throws a std::runtime_error with details; sets output sparsity such that both outputs depend on all inputs when any input is variable. </p>
+
+</div>
+</div>
+<a id="a9f2681d58e10b6b740b4588efbce5ae5" name="a9f2681d58e10b6b740b4588efbce5ae5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9f2681d58e10b6b740b4588efbce5ae5">&#9670;&#160;</a></span>rev_sparse_jac() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::rates::weak::WeakReaction::AtomicWeakRate::rev_sparse_jac </td>
+          <td>(</td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>q</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; bool &gt; &amp;&#160;</td>
+          <td class="paramname"><em>rt</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::vector&lt; bool &gt; &amp;&#160;</td>
+          <td class="paramname"><em>st</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>x</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae9d61bdda761da89733408c232d7220e" name="ae9d61bdda761da89733408c232d7220e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae9d61bdda761da89733408c232d7220e">&#9670;&#160;</a></span>rev_sparse_jac() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::rates::weak::WeakReaction::AtomicWeakRate::rev_sparse_jac </td>
+          <td>(</td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>q</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>rt</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>st</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reverse-mode sparsity for Jacobian. </p>
+
+</div>
+</div>
+<a id="aad13654ea15547c2c95035c3b7937d58" name="aad13654ea15547c2c95035c3b7937d58"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aad13654ea15547c2c95035c3b7937d58">&#9670;&#160;</a></span>reverse()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::rates::weak::WeakReaction::AtomicWeakRate::reverse </td>
+          <td>(</td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>q</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
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+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; double &gt; &amp;&#160;</td>
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+          <td></td>
+          <td class="paramtype">const CppAD::vector&lt; double &gt; &amp;&#160;</td>
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+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::reaction::LogicalReaclibReaction Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a69508797ca0793f6d3f58de4e0b97667">add_reaction</a>(const ReaclibReaction &amp;reaction)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a445777acbbee2032d83a256181a90e3c">all_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a1353d7d2208497b38799bf69f574c275">begin</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a211b1332dc12a1fee942523dbc688272">begin</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ae66b446c98add7e00a1d960f4e7c60dd">calculate_energy_generation_rate</a>(const double T9, const double rho, const double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a4282f85c34d6db1994c07e7a40f66d80">calculate_energy_generation_rate</a>(const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a9b1363314159eaf9c56aaa233f5eebd6">calculate_log_rate_partial_deriv_wrt_T9</a>(double T9, double rho, double Ye, double mue, const fourdst::composition::Composition &amp;comp) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#ac21a726884930e6a00792e7c3eb43f42">calculate_rate</a>(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#ab5bdbe13239f1180f32fb0a14a60d0a9">calculate_rate</a>(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a19462806927500f72b7d3f578b3040de">calculate_rate</a>(const T T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#abe189c43e4d509d9d05dd205861ceddc">chapter</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#ad113b9cb64c449f9449c4cce4fa64076">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a171b690e1abaf23f11a94c39e9f8c944">contains</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a4e4811436d09afaa4a14c51d9af71f88">contains_product</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a65a12e5f6180873866cfaaf130fd1156">contains_reactant</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#abe3ab72b2577cbe0f87436b063ce812c">countProductOccurrences</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a79928f9c52822202b3156bd145e35ad8">countReactantOccurrences</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#aefaf6c4c32ae54a2882da0e031632a74">end</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#ae0b38d499bf0c9ca58461ea2862a7d5a">end</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a0b30c49925823c87980b4fca17c8282e">excess_energy</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#adfef828853172ca573395160e2ce9c49">getRateCoefficients</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a661dd461e51c37133f7f9931389fd3cc">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a06312f834439ccf93012dea53cab47ce">id</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a181b2c75af1f2701c43594c5bb2bac2d">is_reverse</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a2b38a9e8a4bdfc964ba76be3f718eab6">LogicalReaclibReaction</a>(const std::vector&lt; std::unique_ptr&lt; ReaclibReaction &gt; &gt; &amp;reactions)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a3d96384887b5b7f0022d1bc43f6d45b5">LogicalReaclibReaction</a>(const std::vector&lt; std::unique_ptr&lt; ReaclibReaction &gt; &gt; &amp;reactions, bool reverse)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#adbcb383bac0f47c66251ee1b7c5f539d">m_chapter</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a8ca86e0f8f95ffb6d87ca295e44f14c5">m_id</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#abab0ed78925789856ebb119d60c6a53d">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a51f658789f34f96e0e6bd42cef5cbfe4">m_peName</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a4c6ba4d6355f33cbe2e72614fa72363f">m_products</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ad89d4b413c507e850dba624e1b36b886">m_productsVec</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a498c202a259cbc315997ec68a2cb8a59">m_qValue</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a8ea3de0412395b7b617c4b71cbc2ab68">m_rateCoefficients</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#afe1b95bf9d81f7521b9f19bbd1305d01">m_rates</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a9ecfb28ccb32904a28217fe2eb0c659d">m_reactants</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#aae29f755030c51fc9c8f7db52a022f84">m_reactantsVec</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#af52b42d940f6a09dba5d28898d2b0b1f">m_reverse</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a7e79437a68947e176b8dd7dcbe27baab">m_sourceLabel</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a8c6f12a01c6d1fdeba1f0cc73128731e">m_sources</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a853458f525bf3270b5ad826c6fd9e1ca">m_weak</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a9205126955ad38f56e8aca3112bc150a">num_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a8b6008e0f629329bfc62256f4f081b77">operator!=</a>(const ReaclibReaction &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a495ca800cc1dd224ce2a821a825afafd">operator&lt;&lt;</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae7c930525db447e39b4de18fbc1251a8">operator==</a>(const ReaclibReaction &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#af775f97f4d5e144e33bc6e0ba58a5851">peName</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a67c8fa4d5929c7a8cbca9b3d9dd2b704">product_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a5f563b99bb550d5bafa2a989502de019">products</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae47931948f12816eb890c0db4fff4d68">qValue</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#adfed51cf788a7ed4770cbd5945ddab2f">rateCoefficients</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a264112a230817a6080c770686e5bcc01">ReaclibReaction</a>(std::string_view id, std::string_view peName, int chapter, const std::vector&lt; fourdst::atomic::Species &gt; &amp;reactants, const std::vector&lt; fourdst::atomic::Species &gt; &amp;products, double qValue, std::string_view label, const RateCoefficientSet &amp;sets, bool reverse=false)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ad85ca288289b25d482cbb8e3ff270028">reactant_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ad095aba46860fec0e68386bf04f7f142">reactants</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a4c58951d9f7ab252717c226b0da80a9d">size</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a96d4ab87de02e9b0be3c248e2e955b4b">sourceLabel</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#ad4979f437dc787a5475c3a029804ed99">sources</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a57b2695d152360a6ba08776cc760e3a1">stoichiometry</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a0f629cbfe95dc5643b5e3724be0db2f9">stoichiometry</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#acbfa2d4e23dff6641be21cc1e754be15">type</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">gridfire::reaction::LogicalReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae2b9b41a598c5f0dcd050b32985ea44e">~ReaclibReaction</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab1860df84843be70f97469761e11ab6a">~Reaction</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="classgridfire_1_1reaction_1_1LogicalReaclibReaction-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::reaction::LogicalReaclibReaction Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Represents a "logical" reaction that aggregates rates from multiple sources.  
+ <a href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#details">More...</a></p>
+
+<p><code>#include &lt;reaction.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::reaction::LogicalReaclibReaction:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1reaction_1_1LogicalReaclibReaction__inherit__graph.svg" width="192" height="227"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::reaction::LogicalReaclibReaction:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1reaction_1_1LogicalReaclibReaction__coll__graph.svg" width="100%" height="537"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a2b38a9e8a4bdfc964ba76be3f718eab6" id="r_a2b38a9e8a4bdfc964ba76be3f718eab6"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a2b38a9e8a4bdfc964ba76be3f718eab6">LogicalReaclibReaction</a> (const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">ReaclibReaction</a> &gt; &gt; &amp;reactions)</td></tr>
+<tr class="memdesc:a2b38a9e8a4bdfc964ba76be3f718eab6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a LogicalReaction from a vector of <code><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a></code> objects. Implicitly assumes that the logical reaction is for a forward (i.e. not reverse) reaction.  <br /></td></tr>
+<tr class="separator:a2b38a9e8a4bdfc964ba76be3f718eab6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3d96384887b5b7f0022d1bc43f6d45b5" id="r_a3d96384887b5b7f0022d1bc43f6d45b5"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a3d96384887b5b7f0022d1bc43f6d45b5">LogicalReaclibReaction</a> (const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">ReaclibReaction</a> &gt; &gt; &amp;reactions, bool reverse)</td></tr>
+<tr class="separator:a3d96384887b5b7f0022d1bc43f6d45b5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a69508797ca0793f6d3f58de4e0b97667" id="r_a69508797ca0793f6d3f58de4e0b97667"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a69508797ca0793f6d3f58de4e0b97667">add_reaction</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">ReaclibReaction</a> &amp;reaction)</td></tr>
+<tr class="memdesc:a69508797ca0793f6d3f58de4e0b97667"><td class="mdescLeft">&#160;</td><td class="mdescRight">Adds another <code><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a></code> source to this logical reaction.  <br /></td></tr>
+<tr class="separator:a69508797ca0793f6d3f58de4e0b97667"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4c58951d9f7ab252717c226b0da80a9d" id="r_a4c58951d9f7ab252717c226b0da80a9d"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a4c58951d9f7ab252717c226b0da80a9d">size</a> () const</td></tr>
+<tr class="memdesc:a4c58951d9f7ab252717c226b0da80a9d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the number of source rates contributing to this logical reaction.  <br /></td></tr>
+<tr class="separator:a4c58951d9f7ab252717c226b0da80a9d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad4979f437dc787a5475c3a029804ed99" id="r_ad4979f437dc787a5475c3a029804ed99"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::string &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#ad4979f437dc787a5475c3a029804ed99">sources</a> () const</td></tr>
+<tr class="memdesc:ad4979f437dc787a5475c3a029804ed99"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the list of source labels for the aggregated rates.  <br /></td></tr>
+<tr class="separator:ad4979f437dc787a5475c3a029804ed99"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac21a726884930e6a00792e7c3eb43f42" id="r_ac21a726884930e6a00792e7c3eb43f42"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#ac21a726884930e6a00792e7c3eb43f42">calculate_rate</a> (double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td></tr>
+<tr class="memdesc:ac21a726884930e6a00792e7c3eb43f42"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the total reaction rate by summing all source rates.  <br /></td></tr>
+<tr class="separator:ac21a726884930e6a00792e7c3eb43f42"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9b1363314159eaf9c56aaa233f5eebd6" id="r_a9b1363314159eaf9c56aaa233f5eebd6"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a9b1363314159eaf9c56aaa233f5eebd6">calculate_log_rate_partial_deriv_wrt_T9</a> (double T9, double rho, double Ye, double mue, const fourdst::composition::Composition &amp;comp) const override</td></tr>
+<tr class="memdesc:a9b1363314159eaf9c56aaa233f5eebd6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logarithmic partial derivative of the rate with respect to temperature.  <br /></td></tr>
+<tr class="separator:a9b1363314159eaf9c56aaa233f5eebd6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acbfa2d4e23dff6641be21cc1e754be15" id="r_acbfa2d4e23dff6641be21cc1e754be15"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#acbfa2d4e23dff6641be21cc1e754be15">type</a> () const override</td></tr>
+<tr class="memdesc:acbfa2d4e23dff6641be21cc1e754be15"><td class="mdescLeft">&#160;</td><td class="mdescRight">Category of this reaction (e.g., REACLIB, WEAK, LOGICAL_REACLIB).  <br /></td></tr>
+<tr class="separator:acbfa2d4e23dff6641be21cc1e754be15"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad113b9cb64c449f9449c4cce4fa64076" id="r_ad113b9cb64c449f9449c4cce4fa64076"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#ad113b9cb64c449f9449c4cce4fa64076">clone</a> () const override</td></tr>
+<tr class="memdesc:ad113b9cb64c449f9449c4cce4fa64076"><td class="mdescLeft">&#160;</td><td class="mdescRight">Polymorphic deep copy.  <br /></td></tr>
+<tr class="separator:ad113b9cb64c449f9449c4cce4fa64076"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab5bdbe13239f1180f32fb0a14a60d0a9" id="r_ab5bdbe13239f1180f32fb0a14a60d0a9"><td class="memItemLeft" align="right" valign="top">CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#ab5bdbe13239f1180f32fb0a14a60d0a9">calculate_rate</a> (CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td></tr>
+<tr class="memdesc:ab5bdbe13239f1180f32fb0a14a60d0a9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the total reaction rate using CppAD types.  <br /></td></tr>
+<tr class="separator:ab5bdbe13239f1180f32fb0a14a60d0a9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adfef828853172ca573395160e2ce9c49" id="r_adfef828853172ca573395160e2ce9c49"><td class="memItemLeft" align="right" valign="top">std::optional&lt; std::vector&lt; <a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">RateCoefficientSet</a> &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#adfef828853172ca573395160e2ce9c49">getRateCoefficients</a> () const override</td></tr>
+<tr class="separator:adfef828853172ca573395160e2ce9c49"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr><td colspan="2"><div class="groupHeader">Iterators</div></td></tr>
+<tr><td colspan="2"><div class="groupText"><p>Provides iterators to loop over the rate coefficient sets. </p>
+</div></td></tr>
+<tr class="memitem:a1353d7d2208497b38799bf69f574c275" id="r_a1353d7d2208497b38799bf69f574c275"><td class="memItemLeft" align="right" valign="top">auto&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a1353d7d2208497b38799bf69f574c275">begin</a> ()</td></tr>
+<tr class="separator:a1353d7d2208497b38799bf69f574c275"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a211b1332dc12a1fee942523dbc688272" id="r_a211b1332dc12a1fee942523dbc688272"><td class="memItemLeft" align="right" valign="top">auto&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a211b1332dc12a1fee942523dbc688272">begin</a> () const</td></tr>
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+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
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+<tr class="separator:a495ca800cc1dd224ce2a821a825afafd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
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+<tr class="memdesc:adbcb383bac0f47c66251ee1b7c5f539d inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Chapter number from the REACLIB database, defining the reaction structure.  <br /></td></tr>
+<tr class="separator:adbcb383bac0f47c66251ee1b7c5f539d inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a498c202a259cbc315997ec68a2cb8a59 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_a498c202a259cbc315997ec68a2cb8a59"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a498c202a259cbc315997ec68a2cb8a59">m_qValue</a> = 0.0</td></tr>
+<tr class="memdesc:a498c202a259cbc315997ec68a2cb8a59 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Q-value of the reaction in MeV.  <br /></td></tr>
+<tr class="separator:a498c202a259cbc315997ec68a2cb8a59 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9ecfb28ccb32904a28217fe2eb0c659d inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_a9ecfb28ccb32904a28217fe2eb0c659d"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; fourdst::atomic::Species, size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a9ecfb28ccb32904a28217fe2eb0c659d">m_reactants</a></td></tr>
+<tr class="memdesc:a9ecfb28ccb32904a28217fe2eb0c659d inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reactants of the reaction.  <br /></td></tr>
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+<tr class="memitem:a4c6ba4d6355f33cbe2e72614fa72363f inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_a4c6ba4d6355f33cbe2e72614fa72363f"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; fourdst::atomic::Species, size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a4c6ba4d6355f33cbe2e72614fa72363f">m_products</a></td></tr>
+<tr class="memdesc:a4c6ba4d6355f33cbe2e72614fa72363f inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Products of the reaction.  <br /></td></tr>
+<tr class="separator:a4c6ba4d6355f33cbe2e72614fa72363f inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:ad89d4b413c507e850dba624e1b36b886 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7e79437a68947e176b8dd7dcbe27baab inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_a7e79437a68947e176b8dd7dcbe27baab"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a7e79437a68947e176b8dd7dcbe27baab">m_sourceLabel</a></td></tr>
+<tr class="memdesc:a7e79437a68947e176b8dd7dcbe27baab inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Source label for the rate data (e.g., "wc12w", "st08").  <br /></td></tr>
+<tr class="separator:a7e79437a68947e176b8dd7dcbe27baab inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8ea3de0412395b7b617c4b71cbc2ab68 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_a8ea3de0412395b7b617c4b71cbc2ab68"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">RateCoefficientSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a8ea3de0412395b7b617c4b71cbc2ab68">m_rateCoefficients</a></td></tr>
+<tr class="memdesc:a8ea3de0412395b7b617c4b71cbc2ab68 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">The seven rate coefficients.  <br /></td></tr>
+<tr class="separator:a8ea3de0412395b7b617c4b71cbc2ab68 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af52b42d940f6a09dba5d28898d2b0b1f inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_af52b42d940f6a09dba5d28898d2b0b1f"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#af52b42d940f6a09dba5d28898d2b0b1f">m_reverse</a> = false</td></tr>
+<tr class="memdesc:af52b42d940f6a09dba5d28898d2b0b1f inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Flag indicating if this is a reverse reaction rate.  <br /></td></tr>
+<tr class="separator:af52b42d940f6a09dba5d28898d2b0b1f inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Represents a "logical" reaction that aggregates rates from multiple sources. </p>
+<p>A <a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html" title="Represents a &quot;logical&quot; reaction that aggregates rates from multiple sources.">LogicalReaclibReaction</a> shares the same reactants and products but combines rates from different evaluations (e.g., "wc12" and "st08" for the same physical reaction). The total rate is the sum of the individual rates. It inherits from <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a>, using the properties of the first provided reaction as its base properties (reactants, products, Q-value, etc.). </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a2b38a9e8a4bdfc964ba76be3f718eab6" name="a2b38a9e8a4bdfc964ba76be3f718eab6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2b38a9e8a4bdfc964ba76be3f718eab6">&#9670;&#160;</a></span>LogicalReaclibReaction() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::reaction::LogicalReaclibReaction::LogicalReaclibReaction </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">ReaclibReaction</a> &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructs a LogicalReaction from a vector of <code><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a></code> objects. Implicitly assumes that the logical reaction is for a forward (i.e. not reverse) reaction. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>A vector of reactions that represent the same logical process. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>if the provided reactions have inconsistent Q-values. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a3d96384887b5b7f0022d1bc43f6d45b5" name="a3d96384887b5b7f0022d1bc43f6d45b5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3d96384887b5b7f0022d1bc43f6d45b5">&#9670;&#160;</a></span>LogicalReaclibReaction() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::reaction::LogicalReaclibReaction::LogicalReaclibReaction </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">ReaclibReaction</a> &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>reverse</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+<p>@breif Constructs a LogicalReaction from a vector of <code><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a></code> objects and allows the user to specify if the logical set is for a reverse reaction explicitly </p><dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>A vector of reactions that represent the same logical process </td></tr>
+    <tr><td class="paramname">reverse</td><td>A flag to control if this logical reaction is reverse or not </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>std::runtime_error if the provided reactions have inconsistent Q-values. </dd></dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a69508797ca0793f6d3f58de4e0b97667" name="a69508797ca0793f6d3f58de4e0b97667"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a69508797ca0793f6d3f58de4e0b97667">&#9670;&#160;</a></span>add_reaction()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::reaction::LogicalReaclibReaction::add_reaction </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">ReaclibReaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Adds another <code><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a></code> source to this logical reaction. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The reaction to add. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>if the reaction has a different <code>peName</code>, a duplicate source label, or an inconsistent Q-value. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a1353d7d2208497b38799bf69f574c275" name="a1353d7d2208497b38799bf69f574c275"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1353d7d2208497b38799bf69f574c275">&#9670;&#160;</a></span>begin() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::reaction::LogicalReaclibReaction::begin </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a211b1332dc12a1fee942523dbc688272" name="a211b1332dc12a1fee942523dbc688272"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a211b1332dc12a1fee942523dbc688272">&#9670;&#160;</a></span>begin() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::reaction::LogicalReaclibReaction::begin </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a9b1363314159eaf9c56aaa233f5eebd6" name="a9b1363314159eaf9c56aaa233f5eebd6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9b1363314159eaf9c56aaa233f5eebd6">&#9670;&#160;</a></span>calculate_log_rate_partial_deriv_wrt_T9()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::reaction::LogicalReaclibReaction::calculate_log_rate_partial_deriv_wrt_T9 </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logarithmic partial derivative of the rate with respect to temperature. </p>
+<p>Implementations return d(ln rate)/d(ln T9) or an equivalent measure (as documented by the concrete class), evaluated at the provided state.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK (10^9 K). </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density (g cm^-3). </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction. </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object providing composition in a convenient form. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The logarithmic temperature derivative of the rate. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#aa2b615e764bb005e526ca9327319c735">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a19462806927500f72b7d3f578b3040de" name="a19462806927500f72b7d3f578b3040de"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a19462806927500f72b7d3f578b3040de">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[1/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">T gridfire::reaction::LogicalReaclibReaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">const T&#160;</td>
+          <td class="paramname"><em>T9</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Template implementation for calculating the total reaction rate. </p>
+<dl class="tparams"><dt>Template Parameters</dt><dd>
+  <table class="tparams">
+    <tr><td class="paramname">T</td><td>The numeric type (double or CppAD::AD&lt;double&gt;). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The total calculated reaction rate.</dd></dl>
+<p>This method iterates through all stored <code><a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html" title="Holds the seven coefficients for the REACLIB rate equation.">RateCoefficientSet</a></code>s, calculates the rate for each, and returns their sum. </p>
+
+</div>
+</div>
+<a id="ab5bdbe13239f1180f32fb0a14a60d0a9" name="ab5bdbe13239f1180f32fb0a14a60d0a9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab5bdbe13239f1180f32fb0a14a60d0a9">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[2/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">CppAD::AD&lt; double &gt; gridfire::reaction::LogicalReaclibReaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>index_to_species_map</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the total reaction rate using CppAD types. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K, as a CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">rho</td><td></td></tr>
+    <tr><td class="paramname">Ye</td><td></td></tr>
+    <tr><td class="paramname">mue</td><td></td></tr>
+    <tr><td class="paramname">Y</td><td></td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td></td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The total calculated reaction rate, as a CppAD::AD&lt;double&gt;. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#af8303d67df61fc9e31ce054f0e8a3e14">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="ac21a726884930e6a00792e7c3eb43f42" name="ac21a726884930e6a00792e7c3eb43f42"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac21a726884930e6a00792e7c3eb43f42">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[3/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::reaction::LogicalReaclibReaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>index_to_species_map</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the total reaction rate by summing all source rates. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td></td></tr>
+    <tr><td class="paramname">Ye</td><td></td></tr>
+    <tr><td class="paramname">mue</td><td></td></tr>
+    <tr><td class="paramname">Y</td><td></td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td></td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The total calculated reaction rate. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a83c121480533593adfd68c4a67a649f1">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="ad113b9cb64c449f9449c4cce4fa64076" name="ad113b9cb64c449f9449c4cce4fa64076"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad113b9cb64c449f9449c4cce4fa64076">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &gt; gridfire::reaction::LogicalReaclibReaction::clone </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Polymorphic deep copy. </p>
+<dl class="section return"><dt>Returns</dt><dd>A std::unique_ptr owning a new <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> equal to this one. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab95ce7fb022a9432bdc77f14679221ee">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="aefaf6c4c32ae54a2882da0e031632a74" name="aefaf6c4c32ae54a2882da0e031632a74"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aefaf6c4c32ae54a2882da0e031632a74">&#9670;&#160;</a></span>end() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::reaction::LogicalReaclibReaction::end </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae0b38d499bf0c9ca58461ea2862a7d5a" name="ae0b38d499bf0c9ca58461ea2862a7d5a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae0b38d499bf0c9ca58461ea2862a7d5a">&#9670;&#160;</a></span>end() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::reaction::LogicalReaclibReaction::end </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="adfef828853172ca573395160e2ce9c49" name="adfef828853172ca573395160e2ce9c49"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adfef828853172ca573395160e2ce9c49">&#9670;&#160;</a></span>getRateCoefficients()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::optional&lt; std::vector&lt; <a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">RateCoefficientSet</a> &gt; &gt; gridfire::reaction::LogicalReaclibReaction::getRateCoefficients </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a6c51c30a0eec2f00c7d1f1c0be44cb0b">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a4c58951d9f7ab252717c226b0da80a9d" name="a4c58951d9f7ab252717c226b0da80a9d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4c58951d9f7ab252717c226b0da80a9d">&#9670;&#160;</a></span>size()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::reaction::LogicalReaclibReaction::size </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the number of source rates contributing to this logical reaction. </p>
+<dl class="section return"><dt>Returns</dt><dd>The number of aggregated rates. </dd></dl>
+
+</div>
+</div>
+<a id="ad4979f437dc787a5475c3a029804ed99" name="ad4979f437dc787a5475c3a029804ed99"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad4979f437dc787a5475c3a029804ed99">&#9670;&#160;</a></span>sources()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; std::string &gt; gridfire::reaction::LogicalReaclibReaction::sources </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the list of source labels for the aggregated rates. </p>
+<dl class="section return"><dt>Returns</dt><dd>A vector of source label strings. </dd></dl>
+
+</div>
+</div>
+<a id="acbfa2d4e23dff6641be21cc1e754be15" name="acbfa2d4e23dff6641be21cc1e754be15"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acbfa2d4e23dff6641be21cc1e754be15">&#9670;&#160;</a></span>type()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a> gridfire::reaction::LogicalReaclibReaction::type </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Category of this reaction (e.g., REACLIB, WEAK, LOGICAL_REACLIB). </p>
+<dl class="section return"><dt>Returns</dt><dd>Enumerated reaction type for runtime dispatch and filtering. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a7f2590eee9f0dfb7b73cd92170a844b7">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Friends And Related Symbol Documentation</h2>
+<a id="a495ca800cc1dd224ce2a821a825afafd" name="a495ca800cc1dd224ce2a821a825afafd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a495ca800cc1dd224ce2a821a825afafd">&#9670;&#160;</a></span>operator&lt;&lt;</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::ostream &amp; operator&lt;&lt; </td>
+          <td>(</td>
+          <td class="paramtype">std::ostream &amp;&#160;</td>
+          <td class="paramname"><em>os</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">LogicalReaclibReaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>r</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">friend</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="afe1b95bf9d81f7521b9f19bbd1305d01" name="afe1b95bf9d81f7521b9f19bbd1305d01"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afe1b95bf9d81f7521b9f19bbd1305d01">&#9670;&#160;</a></span>m_rates</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;<a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">RateCoefficientSet</a>&gt; gridfire::reaction::LogicalReaclibReaction::m_rates</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>List of rate coefficient sets from each source. </p>
+
+</div>
+</div>
+<a id="a8c6f12a01c6d1fdeba1f0cc73128731e" name="a8c6f12a01c6d1fdeba1f0cc73128731e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8c6f12a01c6d1fdeba1f0cc73128731e">&#9670;&#160;</a></span>m_sources</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;std::string&gt; gridfire::reaction::LogicalReaclibReaction::m_sources</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>List of source labels. </p>
+
+</div>
+</div>
+<a id="a853458f525bf3270b5ad826c6fd9e1ca" name="a853458f525bf3270b5ad826c6fd9e1ca"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a853458f525bf3270b5ad826c6fd9e1ca">&#9670;&#160;</a></span>m_weak</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::LogicalReaclibReaction::m_weak = false</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/reaction/<a class="el" href="reaction_8h.html">reaction.h</a></li>
+<li>src/lib/reaction/<a class="el" href="reaction_8cpp.html">reaction.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1reaction.html">reaction</a></li><li class="navelem"><a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html">LogicalReaclibReaction</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1reaction_1_1LogicalReaclibReaction.js b/docs/html/classgridfire_1_1reaction_1_1LogicalReaclibReaction.js
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+var classgridfire_1_1reaction_1_1LogicalReaclibReaction =
+[
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+    [ "begin", "classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a211b1332dc12a1fee942523dbc688272", null ],
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+    [ "calculate_rate", "classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#ab5bdbe13239f1180f32fb0a14a60d0a9", null ],
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+    [ "operator<<", "classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a495ca800cc1dd224ce2a821a825afafd", null ],
+    [ "m_rates", "classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#afe1b95bf9d81f7521b9f19bbd1305d01", null ],
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::reaction::ReaclibReaction Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a445777acbbee2032d83a256181a90e3c">all_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ae66b446c98add7e00a1d960f4e7c60dd">calculate_energy_generation_rate</a>(const double T9, const double rho, const double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a4282f85c34d6db1994c07e7a40f66d80">calculate_energy_generation_rate</a>(const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ada6ec1ae05b9a92b58e6a4ecdf5a1656">calculate_log_rate_partial_deriv_wrt_T9</a>(double T9, double rho, double Ye, double mue, const fourdst::composition::Composition &amp;comp) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#acd16b1daf13456b3523362a37b1bf9b0">calculate_rate</a>(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#afec5ccf7a8fb1ba56c8cc852ce858c5e">calculate_rate</a>(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#aeb177f9cf69e4f97c4518a27e6480523">calculate_rate</a>(const T T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#abe189c43e4d509d9d05dd205861ceddc">chapter</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a54fde02e7010e806136f976ab64b1740">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a171b690e1abaf23f11a94c39e9f8c944">contains</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a4e4811436d09afaa4a14c51d9af71f88">contains_product</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a65a12e5f6180873866cfaaf130fd1156">contains_reactant</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#abe3ab72b2577cbe0f87436b063ce812c">countProductOccurrences</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a79928f9c52822202b3156bd145e35ad8">countReactantOccurrences</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a0b30c49925823c87980b4fca17c8282e">excess_energy</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#aefd0436ae72880358214d5b79c9c79eb">getRateCoefficients</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a661dd461e51c37133f7f9931389fd3cc">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a06312f834439ccf93012dea53cab47ce">id</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a181b2c75af1f2701c43594c5bb2bac2d">is_reverse</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#adbcb383bac0f47c66251ee1b7c5f539d">m_chapter</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a8ca86e0f8f95ffb6d87ca295e44f14c5">m_id</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#abab0ed78925789856ebb119d60c6a53d">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a51f658789f34f96e0e6bd42cef5cbfe4">m_peName</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a4c6ba4d6355f33cbe2e72614fa72363f">m_products</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ad89d4b413c507e850dba624e1b36b886">m_productsVec</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a498c202a259cbc315997ec68a2cb8a59">m_qValue</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a8ea3de0412395b7b617c4b71cbc2ab68">m_rateCoefficients</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a9ecfb28ccb32904a28217fe2eb0c659d">m_reactants</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#aae29f755030c51fc9c8f7db52a022f84">m_reactantsVec</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#af52b42d940f6a09dba5d28898d2b0b1f">m_reverse</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a7e79437a68947e176b8dd7dcbe27baab">m_sourceLabel</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a9205126955ad38f56e8aca3112bc150a">num_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a8b6008e0f629329bfc62256f4f081b77">operator!=</a>(const ReaclibReaction &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae24ad1e38daab536aec6ac72c67e8615">operator&lt;&lt;</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae7c930525db447e39b4de18fbc1251a8">operator==</a>(const ReaclibReaction &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#af775f97f4d5e144e33bc6e0ba58a5851">peName</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a67c8fa4d5929c7a8cbca9b3d9dd2b704">product_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a5f563b99bb550d5bafa2a989502de019">products</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae47931948f12816eb890c0db4fff4d68">qValue</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#adfed51cf788a7ed4770cbd5945ddab2f">rateCoefficients</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a264112a230817a6080c770686e5bcc01">ReaclibReaction</a>(std::string_view id, std::string_view peName, int chapter, const std::vector&lt; fourdst::atomic::Species &gt; &amp;reactants, const std::vector&lt; fourdst::atomic::Species &gt; &amp;products, double qValue, std::string_view label, const RateCoefficientSet &amp;sets, bool reverse=false)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ad85ca288289b25d482cbb8e3ff270028">reactant_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ad095aba46860fec0e68386bf04f7f142">reactants</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a96d4ab87de02e9b0be3c248e2e955b4b">sourceLabel</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a57b2695d152360a6ba08776cc760e3a1">stoichiometry</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a0f629cbfe95dc5643b5e3724be0db2f9">stoichiometry</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a3c0fbdd07f9a837bd031c5bdc58e0e8f">type</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae2b9b41a598c5f0dcd050b32985ea44e">~ReaclibReaction</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab1860df84843be70f97469761e11ab6a">~Reaction</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pro-attribs">Protected Attributes</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="classgridfire_1_1reaction_1_1ReaclibReaction-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::reaction::ReaclibReaction Class Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;reaction.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::reaction::ReaclibReaction:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1reaction_1_1ReaclibReaction__inherit__graph.svg" width="552" height="115"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::reaction::ReaclibReaction:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1reaction_1_1ReaclibReaction__coll__graph.svg" width="100%" height="485"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:ae2b9b41a598c5f0dcd050b32985ea44e" id="r_ae2b9b41a598c5f0dcd050b32985ea44e"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae2b9b41a598c5f0dcd050b32985ea44e">~ReaclibReaction</a> () override=default</td></tr>
+<tr class="separator:ae2b9b41a598c5f0dcd050b32985ea44e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a264112a230817a6080c770686e5bcc01" id="r_a264112a230817a6080c770686e5bcc01"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a264112a230817a6080c770686e5bcc01">ReaclibReaction</a> (std::string_view <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a06312f834439ccf93012dea53cab47ce">id</a>, std::string_view <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#af775f97f4d5e144e33bc6e0ba58a5851">peName</a>, int <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#abe189c43e4d509d9d05dd205861ceddc">chapter</a>, const std::vector&lt; fourdst::atomic::Species &gt; &amp;<a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ad095aba46860fec0e68386bf04f7f142">reactants</a>, const std::vector&lt; fourdst::atomic::Species &gt; &amp;<a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a5f563b99bb550d5bafa2a989502de019">products</a>, double <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae47931948f12816eb890c0db4fff4d68">qValue</a>, std::string_view label, const <a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">RateCoefficientSet</a> &amp;sets, bool reverse=false)</td></tr>
+<tr class="memdesc:a264112a230817a6080c770686e5bcc01"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> object.  <br /></td></tr>
+<tr class="separator:a264112a230817a6080c770686e5bcc01"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acd16b1daf13456b3523362a37b1bf9b0" id="r_acd16b1daf13456b3523362a37b1bf9b0"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#acd16b1daf13456b3523362a37b1bf9b0">calculate_rate</a> (double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td></tr>
+<tr class="memdesc:acd16b1daf13456b3523362a37b1bf9b0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the reaction rate for a given temperature.  <br /></td></tr>
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+<tr class="separator:abe3ab72b2577cbe0f87436b063ce812c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1reaction_1_1Reaction"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1reaction_1_1Reaction')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td></tr>
+<tr class="memitem:ab1860df84843be70f97469761e11ab6a inherit pub_methods_classgridfire_1_1reaction_1_1Reaction" id="r_ab1860df84843be70f97469761e11ab6a"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab1860df84843be70f97469761e11ab6a">~Reaction</a> ()=default</td></tr>
+<tr class="memdesc:ab1860df84843be70f97469761e11ab6a inherit pub_methods_classgridfire_1_1reaction_1_1Reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for correct polymorphic cleanup.  <br /></td></tr>
+<tr class="separator:ab1860df84843be70f97469761e11ab6a inherit pub_methods_classgridfire_1_1reaction_1_1Reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae66b446c98add7e00a1d960f4e7c60dd inherit pub_methods_classgridfire_1_1reaction_1_1Reaction" id="r_ae66b446c98add7e00a1d960f4e7c60dd"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ae66b446c98add7e00a1d960f4e7c60dd">calculate_energy_generation_rate</a> (const double T9, const double rho, const double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td></tr>
+<tr class="memdesc:ae66b446c98add7e00a1d960f4e7c60dd inherit pub_methods_classgridfire_1_1reaction_1_1Reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convenience: energy generation rate from this reaction (double version).  <br /></td></tr>
+<tr class="separator:ae66b446c98add7e00a1d960f4e7c60dd inherit pub_methods_classgridfire_1_1reaction_1_1Reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4282f85c34d6db1994c07e7a40f66d80 inherit pub_methods_classgridfire_1_1reaction_1_1Reaction" id="r_a4282f85c34d6db1994c07e7a40f66d80"><td class="memItemLeft" align="right" valign="top">virtual CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a4282f85c34d6db1994c07e7a40f66d80">calculate_energy_generation_rate</a> (const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td></tr>
+<tr class="memdesc:a4282f85c34d6db1994c07e7a40f66d80 inherit pub_methods_classgridfire_1_1reaction_1_1Reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convenience: AD-enabled energy generation rate (AD version).  <br /></td></tr>
+<tr class="separator:a4282f85c34d6db1994c07e7a40f66d80 inherit pub_methods_classgridfire_1_1reaction_1_1Reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pro-attribs" name="pro-attribs"></a>
+Protected Attributes</h2></td></tr>
+<tr class="memitem:abab0ed78925789856ebb119d60c6a53d" id="r_abab0ed78925789856ebb119d60c6a53d"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#abab0ed78925789856ebb119d60c6a53d">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="separator:abab0ed78925789856ebb119d60c6a53d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8ca86e0f8f95ffb6d87ca295e44f14c5" id="r_a8ca86e0f8f95ffb6d87ca295e44f14c5"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a8ca86e0f8f95ffb6d87ca295e44f14c5">m_id</a></td></tr>
+<tr class="memdesc:a8ca86e0f8f95ffb6d87ca295e44f14c5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Unique identifier for the reaction (e.g., "h1+h1=&gt;h2+e+nu").  <br /></td></tr>
+<tr class="separator:a8ca86e0f8f95ffb6d87ca295e44f14c5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a51f658789f34f96e0e6bd42cef5cbfe4" id="r_a51f658789f34f96e0e6bd42cef5cbfe4"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a51f658789f34f96e0e6bd42cef5cbfe4">m_peName</a></td></tr>
+<tr class="memdesc:a51f658789f34f96e0e6bd42cef5cbfe4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name of the reaction in (projectile, ejectile) notation (e.g. "p(p,g)d").  <br /></td></tr>
+<tr class="separator:a51f658789f34f96e0e6bd42cef5cbfe4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adbcb383bac0f47c66251ee1b7c5f539d" id="r_adbcb383bac0f47c66251ee1b7c5f539d"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#adbcb383bac0f47c66251ee1b7c5f539d">m_chapter</a></td></tr>
+<tr class="memdesc:adbcb383bac0f47c66251ee1b7c5f539d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Chapter number from the REACLIB database, defining the reaction structure.  <br /></td></tr>
+<tr class="separator:adbcb383bac0f47c66251ee1b7c5f539d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a498c202a259cbc315997ec68a2cb8a59" id="r_a498c202a259cbc315997ec68a2cb8a59"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a498c202a259cbc315997ec68a2cb8a59">m_qValue</a> = 0.0</td></tr>
+<tr class="memdesc:a498c202a259cbc315997ec68a2cb8a59"><td class="mdescLeft">&#160;</td><td class="mdescRight">Q-value of the reaction in MeV.  <br /></td></tr>
+<tr class="separator:a498c202a259cbc315997ec68a2cb8a59"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9ecfb28ccb32904a28217fe2eb0c659d" id="r_a9ecfb28ccb32904a28217fe2eb0c659d"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; fourdst::atomic::Species, size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a9ecfb28ccb32904a28217fe2eb0c659d">m_reactants</a></td></tr>
+<tr class="memdesc:a9ecfb28ccb32904a28217fe2eb0c659d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reactants of the reaction.  <br /></td></tr>
+<tr class="separator:a9ecfb28ccb32904a28217fe2eb0c659d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4c6ba4d6355f33cbe2e72614fa72363f" id="r_a4c6ba4d6355f33cbe2e72614fa72363f"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; fourdst::atomic::Species, size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a4c6ba4d6355f33cbe2e72614fa72363f">m_products</a></td></tr>
+<tr class="memdesc:a4c6ba4d6355f33cbe2e72614fa72363f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Products of the reaction.  <br /></td></tr>
+<tr class="separator:a4c6ba4d6355f33cbe2e72614fa72363f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aae29f755030c51fc9c8f7db52a022f84" id="r_aae29f755030c51fc9c8f7db52a022f84"><td class="memItemLeft" align="right" valign="top">std::optional&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#aae29f755030c51fc9c8f7db52a022f84">m_reactantsVec</a></td></tr>
+<tr class="separator:aae29f755030c51fc9c8f7db52a022f84"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad89d4b413c507e850dba624e1b36b886" id="r_ad89d4b413c507e850dba624e1b36b886"><td class="memItemLeft" align="right" valign="top">std::optional&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ad89d4b413c507e850dba624e1b36b886">m_productsVec</a></td></tr>
+<tr class="separator:ad89d4b413c507e850dba624e1b36b886"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7e79437a68947e176b8dd7dcbe27baab" id="r_a7e79437a68947e176b8dd7dcbe27baab"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a7e79437a68947e176b8dd7dcbe27baab">m_sourceLabel</a></td></tr>
+<tr class="memdesc:a7e79437a68947e176b8dd7dcbe27baab"><td class="mdescLeft">&#160;</td><td class="mdescRight">Source label for the rate data (e.g., "wc12w", "st08").  <br /></td></tr>
+<tr class="separator:a7e79437a68947e176b8dd7dcbe27baab"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8ea3de0412395b7b617c4b71cbc2ab68" id="r_a8ea3de0412395b7b617c4b71cbc2ab68"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">RateCoefficientSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a8ea3de0412395b7b617c4b71cbc2ab68">m_rateCoefficients</a></td></tr>
+<tr class="memdesc:a8ea3de0412395b7b617c4b71cbc2ab68"><td class="mdescLeft">&#160;</td><td class="mdescRight">The seven rate coefficients.  <br /></td></tr>
+<tr class="separator:a8ea3de0412395b7b617c4b71cbc2ab68"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af52b42d940f6a09dba5d28898d2b0b1f" id="r_af52b42d940f6a09dba5d28898d2b0b1f"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#af52b42d940f6a09dba5d28898d2b0b1f">m_reverse</a> = false</td></tr>
+<tr class="memdesc:af52b42d940f6a09dba5d28898d2b0b1f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Flag indicating if this is a reverse reaction rate.  <br /></td></tr>
+<tr class="separator:af52b42d940f6a09dba5d28898d2b0b1f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:aeb177f9cf69e4f97c4518a27e6480523" id="r_aeb177f9cf69e4f97c4518a27e6480523"><td class="memTemplParams" colspan="2">template&lt;typename T &gt; </td></tr>
+<tr class="memitem:aeb177f9cf69e4f97c4518a27e6480523"><td class="memTemplItemLeft" align="right" valign="top">T&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#aeb177f9cf69e4f97c4518a27e6480523">calculate_rate</a> (const T T9) const</td></tr>
+<tr class="memdesc:aeb177f9cf69e4f97c4518a27e6480523"><td class="mdescLeft">&#160;</td><td class="mdescRight">Template implementation for calculating the reaction rate.  <br /></td></tr>
+<tr class="separator:aeb177f9cf69e4f97c4518a27e6480523"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="friends" name="friends"></a>
+Friends</h2></td></tr>
+<tr class="memitem:ae24ad1e38daab536aec6ac72c67e8615" id="r_ae24ad1e38daab536aec6ac72c67e8615"><td class="memItemLeft" align="right" valign="top">std::ostream &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae24ad1e38daab536aec6ac72c67e8615">operator&lt;&lt;</a> (std::ostream &amp;os, const <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">ReaclibReaction</a> &amp;r)</td></tr>
+<tr class="separator:ae24ad1e38daab536aec6ac72c67e8615"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="ae2b9b41a598c5f0dcd050b32985ea44e" name="ae2b9b41a598c5f0dcd050b32985ea44e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae2b9b41a598c5f0dcd050b32985ea44e">&#9670;&#160;</a></span>~ReaclibReaction()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::reaction::ReaclibReaction::~ReaclibReaction </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a264112a230817a6080c770686e5bcc01" name="a264112a230817a6080c770686e5bcc01"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a264112a230817a6080c770686e5bcc01">&#9670;&#160;</a></span>ReaclibReaction()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::reaction::ReaclibReaction::ReaclibReaction </td>
+          <td>(</td>
+          <td class="paramtype">std::string_view&#160;</td>
+          <td class="paramname"><em>id</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">std::string_view&#160;</td>
+          <td class="paramname"><em>peName</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>chapter</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>reactants</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>products</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>qValue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">std::string_view&#160;</td>
+          <td class="paramname"><em>label</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">RateCoefficientSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>sets</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>reverse</em> = <code>false</code>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Constructs a <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> object. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">id</td><td>A unique identifier for the reaction. </td></tr>
+    <tr><td class="paramname">peName</td><td>The name in (projectile, ejectile) notation (e.g., "p(p,g)d"). </td></tr>
+    <tr><td class="paramname">chapter</td><td>The REACLIB chapter number, defining reaction structure. </td></tr>
+    <tr><td class="paramname">reactants</td><td>A vector of reactant species. </td></tr>
+    <tr><td class="paramname">products</td><td>A vector of product species. </td></tr>
+    <tr><td class="paramname">qValue</td><td>The Q-value of the reaction in MeV. </td></tr>
+    <tr><td class="paramname">label</td><td>The sources label for the rate data (e.g., "wc12", "st08"). </td></tr>
+    <tr><td class="paramname">sets</td><td>The set of rate coefficients. </td></tr>
+    <tr><td class="paramname">reverse</td><td>True if this is a reverse reaction rate. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a445777acbbee2032d83a256181a90e3c" name="a445777acbbee2032d83a256181a90e3c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a445777acbbee2032d83a256181a90e3c">&#9670;&#160;</a></span>all_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_set&lt; Species &gt; gridfire::reaction::ReaclibReaction::all_species </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets a set of all unique species involved in the reaction. </p>
+<dl class="section return"><dt>Returns</dt><dd>An unordered_set of all reactant and product species. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#aa13cd9097229fcc99128d9286b8f17e6">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="ada6ec1ae05b9a92b58e6a4ecdf5a1656" name="ada6ec1ae05b9a92b58e6a4ecdf5a1656"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ada6ec1ae05b9a92b58e6a4ecdf5a1656">&#9670;&#160;</a></span>calculate_log_rate_partial_deriv_wrt_T9()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::reaction::ReaclibReaction::calculate_log_rate_partial_deriv_wrt_T9 </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logarithmic partial derivative of the rate with respect to temperature. </p>
+<p>Implementations return d(ln rate)/d(ln T9) or an equivalent measure (as documented by the concrete class), evaluated at the provided state.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK (10^9 K). </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density (g cm^-3). </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction. </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object providing composition in a convenient form. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The logarithmic temperature derivative of the rate. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#aa2b615e764bb005e526ca9327319c735">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="aeb177f9cf69e4f97c4518a27e6480523" name="aeb177f9cf69e4f97c4518a27e6480523"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aeb177f9cf69e4f97c4518a27e6480523">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[1/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">T gridfire::reaction::ReaclibReaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">const T&#160;</td>
+          <td class="paramname"><em>T9</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Template implementation for calculating the reaction rate. </p>
+<dl class="tparams"><dt>Template Parameters</dt><dd>
+  <table class="tparams">
+    <tr><td class="paramname">T</td><td>The numeric type (double or CppAD::AD&lt;double&gt;). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The calculated reaction rate.</dd></dl>
+<p>The rate is calculated using the standard REACLIB formula: <code>rate = exp(a0 + a1/T9 + a2/T9^(1/3) + a3*T9^(1/3) + a4*T9 + a5*T9^(5/3) + a6*ln(T9))</code> </p>
+
+</div>
+</div>
+<a id="afec5ccf7a8fb1ba56c8cc852ce858c5e" name="afec5ccf7a8fb1ba56c8cc852ce858c5e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afec5ccf7a8fb1ba56c8cc852ce858c5e">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[2/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">CppAD::AD&lt; double &gt; gridfire::reaction::ReaclibReaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>index_to_species_map</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the reaction rate for a given temperature using CppAD types. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K, as a CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density, as a CppAD::AD&lt;double&gt; [Not used in this implementation]. </td></tr>
+    <tr><td class="paramname">Ye</td><td></td></tr>
+    <tr><td class="paramname">mue</td><td></td></tr>
+    <tr><td class="paramname">Y</td><td>Molar abundances of species, as a vector of CppAD::AD&lt;double&gt; [Not used in this implementation]. </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td></td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The calculated reaction rate, as a CppAD::AD&lt;double&gt;. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#af8303d67df61fc9e31ce054f0e8a3e14">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="acd16b1daf13456b3523362a37b1bf9b0" name="acd16b1daf13456b3523362a37b1bf9b0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acd16b1daf13456b3523362a37b1bf9b0">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[3/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::reaction::ReaclibReaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>index_to_species_map</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the reaction rate for a given temperature. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>Density [Not used in this implementation]. </td></tr>
+    <tr><td class="paramname">Ye</td><td></td></tr>
+    <tr><td class="paramname">mue</td><td></td></tr>
+    <tr><td class="paramname">Y</td><td></td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td></td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The calculated reaction rate. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a83c121480533593adfd68c4a67a649f1">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="abe189c43e4d509d9d05dd205861ceddc" name="abe189c43e4d509d9d05dd205861ceddc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abe189c43e4d509d9d05dd205861ceddc">&#9670;&#160;</a></span>chapter()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::reaction::ReaclibReaction::chapter </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the REACLIB chapter number. </p>
+<dl class="section return"><dt>Returns</dt><dd>The chapter number. </dd></dl>
+
+</div>
+</div>
+<a id="a54fde02e7010e806136f976ab64b1740" name="a54fde02e7010e806136f976ab64b1740"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a54fde02e7010e806136f976ab64b1740">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &gt; gridfire::reaction::ReaclibReaction::clone </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Polymorphic deep copy. </p>
+<dl class="section return"><dt>Returns</dt><dd>A std::unique_ptr owning a new <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> equal to this one. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab95ce7fb022a9432bdc77f14679221ee">gridfire::reaction::Reaction</a>.</p>
+
+<p>Reimplemented in <a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html#ac3fc463a1cea6854ea989732e1e5f65a">gridfire::reaction::WeakReaclibReaction</a>.</p>
+
+</div>
+</div>
+<a id="a171b690e1abaf23f11a94c39e9f8c944" name="a171b690e1abaf23f11a94c39e9f8c944"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a171b690e1abaf23f11a94c39e9f8c944">&#9670;&#160;</a></span>contains()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReaclibReaction::contains </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Checks if the reaction involves a given species as a reactant or product. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to check for. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the species is involved, false otherwise. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a768db057d358240d4825c21869af0792">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a4e4811436d09afaa4a14c51d9af71f88" name="a4e4811436d09afaa4a14c51d9af71f88"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4e4811436d09afaa4a14c51d9af71f88">&#9670;&#160;</a></span>contains_product()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReaclibReaction::contains_product </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Checks if the reaction involves a given species as a product. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to check for. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the species is a product, false otherwise. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a2708d2e8f42159df6605a5948b13c4c5">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a65a12e5f6180873866cfaaf130fd1156" name="a65a12e5f6180873866cfaaf130fd1156"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a65a12e5f6180873866cfaaf130fd1156">&#9670;&#160;</a></span>contains_reactant()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReaclibReaction::contains_reactant </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Checks if the reaction involves a given species as a reactant. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to check for. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the species is a reactant, false otherwise. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab28bf4f9417ecabcc8350bae449fedd5">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="abe3ab72b2577cbe0f87436b063ce812c" name="abe3ab72b2577cbe0f87436b063ce812c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abe3ab72b2577cbe0f87436b063ce812c">&#9670;&#160;</a></span>countProductOccurrences()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::reaction::ReaclibReaction::countProductOccurrences </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a62fc82b29bacc10cfbceaa1571b14525">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a79928f9c52822202b3156bd145e35ad8" name="a79928f9c52822202b3156bd145e35ad8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a79928f9c52822202b3156bd145e35ad8">&#9670;&#160;</a></span>countReactantOccurrences()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::reaction::ReaclibReaction::countReactantOccurrences </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a036773e4dc917facbf2308dbbe853633">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a0b30c49925823c87980b4fca17c8282e" name="a0b30c49925823c87980b4fca17c8282e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0b30c49925823c87980b4fca17c8282e">&#9670;&#160;</a></span>excess_energy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::reaction::ReaclibReaction::excess_energy </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Calculates the excess energy from the mass difference of reactants and products. </p>
+<dl class="section return"><dt>Returns</dt><dd>The excess energy in MeV. </dd></dl>
+
+</div>
+</div>
+<a id="aefd0436ae72880358214d5b79c9c79eb" name="aefd0436ae72880358214d5b79c9c79eb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aefd0436ae72880358214d5b79c9c79eb">&#9670;&#160;</a></span>getRateCoefficients()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::optional&lt; std::vector&lt; <a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">RateCoefficientSet</a> &gt; &gt; gridfire::reaction::ReaclibReaction::getRateCoefficients </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a6c51c30a0eec2f00c7d1f1c0be44cb0b">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a661dd461e51c37133f7f9931389fd3cc" name="a661dd461e51c37133f7f9931389fd3cc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a661dd461e51c37133f7f9931389fd3cc">&#9670;&#160;</a></span>hash()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">uint64_t gridfire::reaction::ReaclibReaction::hash </td>
+          <td>(</td>
+          <td class="paramtype">uint64_t&#160;</td>
+          <td class="paramname"><em>seed</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Computes a hash for the reaction based on its ID. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">seed</td><td>The seed for the hash function. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A 64-bit hash value.</dd></dl>
+<p>Uses the XXHash64 algorithm on the reaction's ID string. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a7ba8c18cd5445aa3499a6fd351183f7a">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a06312f834439ccf93012dea53cab47ce" name="a06312f834439ccf93012dea53cab47ce"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a06312f834439ccf93012dea53cab47ce">&#9670;&#160;</a></span>id()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string_view gridfire::reaction::ReaclibReaction::id </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the unique identifier of the reaction. </p>
+<dl class="section return"><dt>Returns</dt><dd>The reaction ID. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a94b92308b9619ec20c690e55157786ba">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a181b2c75af1f2701c43594c5bb2bac2d" name="a181b2c75af1f2701c43594c5bb2bac2d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a181b2c75af1f2701c43594c5bb2bac2d">&#9670;&#160;</a></span>is_reverse()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReaclibReaction::is_reverse </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Checks if this is a reverse reaction rate. </p>
+<dl class="section return"><dt>Returns</dt><dd>True if it is a reverse rate, false otherwise. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a3906a668410e02239f9031b5fc580214">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a9205126955ad38f56e8aca3112bc150a" name="a9205126955ad38f56e8aca3112bc150a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9205126955ad38f56e8aca3112bc150a">&#9670;&#160;</a></span>num_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::reaction::ReaclibReaction::num_species </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the number of unique species involved in the reaction. </p>
+<dl class="section return"><dt>Returns</dt><dd>The count of unique species. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ae2a1b0395ac127c792a8049cd0bcc249">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a8b6008e0f629329bfc62256f4f081b77" name="a8b6008e0f629329bfc62256f4f081b77"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8b6008e0f629329bfc62256f4f081b77">&#9670;&#160;</a></span>operator!=()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReaclibReaction::operator!= </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">ReaclibReaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Compares this reaction with another for inequality. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>The other <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> to compare with. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the reactions are not equal. </dd></dl>
+
+</div>
+</div>
+<a id="ae7c930525db447e39b4de18fbc1251a8" name="ae7c930525db447e39b4de18fbc1251a8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae7c930525db447e39b4de18fbc1251a8">&#9670;&#160;</a></span>operator==()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReaclibReaction::operator== </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">ReaclibReaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Compares this reaction with another for equality based on their IDs. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>The other <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> to compare with. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the reaction IDs are the same. </dd></dl>
+
+</div>
+</div>
+<a id="af775f97f4d5e144e33bc6e0ba58a5851" name="af775f97f4d5e144e33bc6e0ba58a5851"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af775f97f4d5e144e33bc6e0ba58a5851">&#9670;&#160;</a></span>peName()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::string_view gridfire::reaction::ReaclibReaction::peName </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the reaction name in (projectile, ejectile) notation. </p>
+<dl class="section return"><dt>Returns</dt><dd>The reaction name (e.g., "p(p,g)d"). </dd></dl>
+
+</div>
+</div>
+<a id="a67c8fa4d5929c7a8cbca9b3d9dd2b704" name="a67c8fa4d5929c7a8cbca9b3d9dd2b704"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a67c8fa4d5929c7a8cbca9b3d9dd2b704">&#9670;&#160;</a></span>product_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_set&lt; Species &gt; gridfire::reaction::ReaclibReaction::product_species </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets a set of all unique product species. </p>
+<dl class="section return"><dt>Returns</dt><dd>An unordered_set of product species. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a0d16572ae2b664374d32ee6c4e22123a">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a5f563b99bb550d5bafa2a989502de019" name="a5f563b99bb550d5bafa2a989502de019"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5f563b99bb550d5bafa2a989502de019">&#9670;&#160;</a></span>products()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::reaction::ReaclibReaction::products </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the vector of product species. </p>
+<dl class="section return"><dt>Returns</dt><dd>A const reference to the vector of products. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a3d7451045d8df41ea98b5e419e0e5ab0">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="ae47931948f12816eb890c0db4fff4d68" name="ae47931948f12816eb890c0db4fff4d68"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae47931948f12816eb890c0db4fff4d68">&#9670;&#160;</a></span>qValue()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::reaction::ReaclibReaction::qValue </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the Q-value of the reaction. </p>
+<dl class="section return"><dt>Returns</dt><dd>The Q-value in whatever units the reaction was defined in (usually MeV). </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="adfed51cf788a7ed4770cbd5945ddab2f" name="adfed51cf788a7ed4770cbd5945ddab2f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adfed51cf788a7ed4770cbd5945ddab2f">&#9670;&#160;</a></span>rateCoefficients()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">RateCoefficientSet</a> &amp; gridfire::reaction::ReaclibReaction::rateCoefficients </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the set of rate coefficients. </p>
+<dl class="section return"><dt>Returns</dt><dd>A const reference to the <a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html" title="Holds the seven coefficients for the REACLIB rate equation.">RateCoefficientSet</a>. </dd></dl>
+
+</div>
+</div>
+<a id="ad85ca288289b25d482cbb8e3ff270028" name="ad85ca288289b25d482cbb8e3ff270028"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad85ca288289b25d482cbb8e3ff270028">&#9670;&#160;</a></span>reactant_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_set&lt; Species &gt; gridfire::reaction::ReaclibReaction::reactant_species </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets a set of all unique reactant species. </p>
+<dl class="section return"><dt>Returns</dt><dd>An unordered_set of reactant species. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a82c14096308cdc9126ab6d9667febcd2">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="ad095aba46860fec0e68386bf04f7f142" name="ad095aba46860fec0e68386bf04f7f142"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad095aba46860fec0e68386bf04f7f142">&#9670;&#160;</a></span>reactants()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::reaction::ReaclibReaction::reactants </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the vector of reactant species. </p>
+<dl class="section return"><dt>Returns</dt><dd>A const reference to the vector of reactants. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ac7b08c61cdc97268b9442afec4d08dad">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a96d4ab87de02e9b0be3c248e2e955b4b" name="a96d4ab87de02e9b0be3c248e2e955b4b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a96d4ab87de02e9b0be3c248e2e955b4b">&#9670;&#160;</a></span>sourceLabel()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string_view gridfire::reaction::ReaclibReaction::sourceLabel </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the source label for the rate data. </p>
+<dl class="section return"><dt>Returns</dt><dd>The source label (e.g., "wc12w", "st08"). </dd></dl>
+
+</div>
+</div>
+<a id="a0f629cbfe95dc5643b5e3724be0db2f9" name="a0f629cbfe95dc5643b5e3724be0db2f9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0f629cbfe95dc5643b5e3724be0db2f9">&#9670;&#160;</a></span>stoichiometry() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt; Species, int &gt; gridfire::reaction::ReaclibReaction::stoichiometry </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets a map of all species to their stoichiometric coefficients. </p>
+<dl class="section return"><dt>Returns</dt><dd>An unordered_map from species to their integer coefficients. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ad49f4cad024db72c966d949c75f1ce4d">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a57b2695d152360a6ba08776cc760e3a1" name="a57b2695d152360a6ba08776cc760e3a1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a57b2695d152360a6ba08776cc760e3a1">&#9670;&#160;</a></span>stoichiometry() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::reaction::ReaclibReaction::stoichiometry </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates the stoichiometric coefficient for a given species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species for which to find the coefficient. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The stoichiometric coefficient (negative for reactants, positive for products). </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab7888b57507d6d27de6e5fcaea40fff5">gridfire::reaction::Reaction</a>.</p>
+
+</div>
+</div>
+<a id="a3c0fbdd07f9a837bd031c5bdc58e0e8f" name="a3c0fbdd07f9a837bd031c5bdc58e0e8f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3c0fbdd07f9a837bd031c5bdc58e0e8f">&#9670;&#160;</a></span>type()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a> gridfire::reaction::ReaclibReaction::type </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Category of this reaction (e.g., REACLIB, WEAK, LOGICAL_REACLIB). </p>
+<dl class="section return"><dt>Returns</dt><dd>Enumerated reaction type for runtime dispatch and filtering. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a7f2590eee9f0dfb7b73cd92170a844b7">gridfire::reaction::Reaction</a>.</p>
+
+<p>Reimplemented in <a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html#af191b4afdf41a9916ecf9647e88d8037">gridfire::reaction::WeakReaclibReaction</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Friends And Related Symbol Documentation</h2>
+<a id="ae24ad1e38daab536aec6ac72c67e8615" name="ae24ad1e38daab536aec6ac72c67e8615"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae24ad1e38daab536aec6ac72c67e8615">&#9670;&#160;</a></span>operator&lt;&lt;</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::ostream &amp; operator&lt;&lt; </td>
+          <td>(</td>
+          <td class="paramtype">std::ostream &amp;&#160;</td>
+          <td class="paramname"><em>os</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">ReaclibReaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>r</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">friend</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="adbcb383bac0f47c66251ee1b7c5f539d" name="adbcb383bac0f47c66251ee1b7c5f539d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adbcb383bac0f47c66251ee1b7c5f539d">&#9670;&#160;</a></span>m_chapter</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::reaction::ReaclibReaction::m_chapter</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Chapter number from the REACLIB database, defining the reaction structure. </p>
+
+</div>
+</div>
+<a id="a8ca86e0f8f95ffb6d87ca295e44f14c5" name="a8ca86e0f8f95ffb6d87ca295e44f14c5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8ca86e0f8f95ffb6d87ca295e44f14c5">&#9670;&#160;</a></span>m_id</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::reaction::ReaclibReaction::m_id</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Unique identifier for the reaction (e.g., "h1+h1=&gt;h2+e+nu"). </p>
+
+</div>
+</div>
+<a id="abab0ed78925789856ebb119d60c6a53d" name="abab0ed78925789856ebb119d60c6a53d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abab0ed78925789856ebb119d60c6a53d">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::reaction::ReaclibReaction::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a51f658789f34f96e0e6bd42cef5cbfe4" name="a51f658789f34f96e0e6bd42cef5cbfe4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a51f658789f34f96e0e6bd42cef5cbfe4">&#9670;&#160;</a></span>m_peName</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::reaction::ReaclibReaction::m_peName</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Name of the reaction in (projectile, ejectile) notation (e.g. "p(p,g)d"). </p>
+
+</div>
+</div>
+<a id="a4c6ba4d6355f33cbe2e72614fa72363f" name="a4c6ba4d6355f33cbe2e72614fa72363f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4c6ba4d6355f33cbe2e72614fa72363f">&#9670;&#160;</a></span>m_products</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;fourdst::atomic::Species, size_t&gt; gridfire::reaction::ReaclibReaction::m_products</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Products of the reaction. </p>
+
+</div>
+</div>
+<a id="ad89d4b413c507e850dba624e1b36b886" name="ad89d4b413c507e850dba624e1b36b886"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad89d4b413c507e850dba624e1b36b886">&#9670;&#160;</a></span>m_productsVec</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::optional&lt;std::vector&lt;fourdst::atomic::Species&gt; &gt; gridfire::reaction::ReaclibReaction::m_productsVec</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a498c202a259cbc315997ec68a2cb8a59" name="a498c202a259cbc315997ec68a2cb8a59"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a498c202a259cbc315997ec68a2cb8a59">&#9670;&#160;</a></span>m_qValue</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::reaction::ReaclibReaction::m_qValue = 0.0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Q-value of the reaction in MeV. </p>
+
+</div>
+</div>
+<a id="a8ea3de0412395b7b617c4b71cbc2ab68" name="a8ea3de0412395b7b617c4b71cbc2ab68"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8ea3de0412395b7b617c4b71cbc2ab68">&#9670;&#160;</a></span>m_rateCoefficients</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">RateCoefficientSet</a> gridfire::reaction::ReaclibReaction::m_rateCoefficients</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>The seven rate coefficients. </p>
+
+</div>
+</div>
+<a id="a9ecfb28ccb32904a28217fe2eb0c659d" name="a9ecfb28ccb32904a28217fe2eb0c659d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9ecfb28ccb32904a28217fe2eb0c659d">&#9670;&#160;</a></span>m_reactants</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;fourdst::atomic::Species, size_t&gt; gridfire::reaction::ReaclibReaction::m_reactants</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reactants of the reaction. </p>
+
+</div>
+</div>
+<a id="aae29f755030c51fc9c8f7db52a022f84" name="aae29f755030c51fc9c8f7db52a022f84"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aae29f755030c51fc9c8f7db52a022f84">&#9670;&#160;</a></span>m_reactantsVec</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::optional&lt;std::vector&lt;fourdst::atomic::Species&gt; &gt; gridfire::reaction::ReaclibReaction::m_reactantsVec</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="af52b42d940f6a09dba5d28898d2b0b1f" name="af52b42d940f6a09dba5d28898d2b0b1f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af52b42d940f6a09dba5d28898d2b0b1f">&#9670;&#160;</a></span>m_reverse</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReaclibReaction::m_reverse = false</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Flag indicating if this is a reverse reaction rate. </p>
+
+</div>
+</div>
+<a id="a7e79437a68947e176b8dd7dcbe27baab" name="a7e79437a68947e176b8dd7dcbe27baab"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7e79437a68947e176b8dd7dcbe27baab">&#9670;&#160;</a></span>m_sourceLabel</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::reaction::ReaclibReaction::m_sourceLabel</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">protected</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Source label for the rate data (e.g., "wc12w", "st08"). </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/reaction/<a class="el" href="reaction_8h.html">reaction.h</a></li>
+<li>src/lib/reaction/<a class="el" href="reaction_8cpp.html">reaction.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1reaction.html">reaction</a></li><li class="navelem"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">ReaclibReaction</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1reaction_1_1ReaclibReaction.js b/docs/html/classgridfire_1_1reaction_1_1ReaclibReaction.js
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+++ b/docs/html/classgridfire_1_1reaction_1_1ReaclibReaction.js
@@ -0,0 +1,49 @@
+var classgridfire_1_1reaction_1_1ReaclibReaction =
+[
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+  <div class="headertitle"><div class="title">gridfire::reaction::Reaction Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#aa13cd9097229fcc99128d9286b8f17e6">all_species</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ae66b446c98add7e00a1d960f4e7c60dd">calculate_energy_generation_rate</a>(const double T9, const double rho, const double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a4282f85c34d6db1994c07e7a40f66d80">calculate_energy_generation_rate</a>(const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#aa2b615e764bb005e526ca9327319c735">calculate_log_rate_partial_deriv_wrt_T9</a>(double T9, double rho, double Ye, double mue, const fourdst::composition::Composition &amp;comp) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a83c121480533593adfd68c4a67a649f1">calculate_rate</a>(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#af8303d67df61fc9e31ce054f0e8a3e14">calculate_rate</a>(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab95ce7fb022a9432bdc77f14679221ee">clone</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a768db057d358240d4825c21869af0792">contains</a>(const fourdst::atomic::Species &amp;species) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a2708d2e8f42159df6605a5948b13c4c5">contains_product</a>(const fourdst::atomic::Species &amp;species) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab28bf4f9417ecabcc8350bae449fedd5">contains_reactant</a>(const fourdst::atomic::Species &amp;species) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a62fc82b29bacc10cfbceaa1571b14525">countProductOccurrences</a>(const fourdst::atomic::Species &amp;species) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a036773e4dc917facbf2308dbbe853633">countReactantOccurrences</a>(const fourdst::atomic::Species &amp;species) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a6c51c30a0eec2f00c7d1f1c0be44cb0b">getRateCoefficients</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a7ba8c18cd5445aa3499a6fd351183f7a">hash</a>(uint64_t seed) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a94b92308b9619ec20c690e55157786ba">id</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a3906a668410e02239f9031b5fc580214">is_reverse</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ae2a1b0395ac127c792a8049cd0bcc249">num_species</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a2b05ab608187216fc751bd2e42e8b7d8">operator&lt;&lt;</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a0d16572ae2b664374d32ee6c4e22123a">product_species</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a3d7451045d8df41ea98b5e419e0e5ab0">products</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c">qValue</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a82c14096308cdc9126ab6d9667febcd2">reactant_species</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ac7b08c61cdc97268b9442afec4d08dad">reactants</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ad49f4cad024db72c966d949c75f1ce4d">stoichiometry</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab7888b57507d6d27de6e5fcaea40fff5">stoichiometry</a>(const fourdst::atomic::Species &amp;species) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a7f2590eee9f0dfb7b73cd92170a844b7">type</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab1860df84843be70f97469761e11ab6a">~Reaction</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="classgridfire_1_1reaction_1_1Reaction-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::reaction::Reaction Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Represents a single nuclear reaction from a specific data source.  
+ <a href="classgridfire_1_1reaction_1_1Reaction.html#details">More...</a></p>
+
+<p><code>#include &lt;reaction.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::reaction::Reaction:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1reaction_1_1Reaction__inherit__graph.svg" width="570" height="147"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:ab1860df84843be70f97469761e11ab6a" id="r_ab1860df84843be70f97469761e11ab6a"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab1860df84843be70f97469761e11ab6a">~Reaction</a> ()=default</td></tr>
+<tr class="memdesc:ab1860df84843be70f97469761e11ab6a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for correct polymorphic cleanup.  <br /></td></tr>
+<tr class="separator:ab1860df84843be70f97469761e11ab6a"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a3d7451045d8df41ea98b5e419e0e5ab0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Ordered list of product species.  <br /></td></tr>
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+<tr class="memdesc:a768db057d358240d4825c21869af0792"><td class="mdescLeft">&#160;</td><td class="mdescRight">True if the species appears as a reactant or a product.  <br /></td></tr>
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+<tr class="memdesc:a2708d2e8f42159df6605a5948b13c4c5"><td class="mdescLeft">&#160;</td><td class="mdescRight">True if the species appears among the products.  <br /></td></tr>
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+<tr class="memdesc:a3906a668410e02239f9031b5fc580214"><td class="mdescLeft">&#160;</td><td class="mdescRight">Whether this object represents a reverse (backward) rate.  <br /></td></tr>
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+<tr class="memitem:aa13cd9097229fcc99128d9286b8f17e6" id="r_aa13cd9097229fcc99128d9286b8f17e6"><td class="memItemLeft" align="right" valign="top">virtual std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#aa13cd9097229fcc99128d9286b8f17e6">all_species</a> () const =0</td></tr>
+<tr class="memdesc:aa13cd9097229fcc99128d9286b8f17e6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of all unique species appearing in the reaction.  <br /></td></tr>
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+<tr class="memitem:a82c14096308cdc9126ab6d9667febcd2" id="r_a82c14096308cdc9126ab6d9667febcd2"><td class="memItemLeft" align="right" valign="top">virtual std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a82c14096308cdc9126ab6d9667febcd2">reactant_species</a> () const =0</td></tr>
+<tr class="memdesc:a82c14096308cdc9126ab6d9667febcd2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of unique reactant species.  <br /></td></tr>
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+<tr class="memitem:a0d16572ae2b664374d32ee6c4e22123a" id="r_a0d16572ae2b664374d32ee6c4e22123a"><td class="memItemLeft" align="right" valign="top">virtual std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a0d16572ae2b664374d32ee6c4e22123a">product_species</a> () const =0</td></tr>
+<tr class="memdesc:a0d16572ae2b664374d32ee6c4e22123a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Set of unique product species.  <br /></td></tr>
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+<tr class="memitem:a036773e4dc917facbf2308dbbe853633" id="r_a036773e4dc917facbf2308dbbe853633"><td class="memItemLeft" align="right" valign="top">virtual size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a036773e4dc917facbf2308dbbe853633">countReactantOccurrences</a> (const fourdst::atomic::Species &amp;species) const =0</td></tr>
+<tr class="separator:a036773e4dc917facbf2308dbbe853633"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a62fc82b29bacc10cfbceaa1571b14525" id="r_a62fc82b29bacc10cfbceaa1571b14525"><td class="memItemLeft" align="right" valign="top">virtual size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a62fc82b29bacc10cfbceaa1571b14525">countProductOccurrences</a> (const fourdst::atomic::Species &amp;species) const =0</td></tr>
+<tr class="separator:a62fc82b29bacc10cfbceaa1571b14525"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae2a1b0395ac127c792a8049cd0bcc249" id="r_ae2a1b0395ac127c792a8049cd0bcc249"><td class="memItemLeft" align="right" valign="top">virtual size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ae2a1b0395ac127c792a8049cd0bcc249">num_species</a> () const =0</td></tr>
+<tr class="memdesc:ae2a1b0395ac127c792a8049cd0bcc249"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of unique species involved in the reaction.  <br /></td></tr>
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+<tr class="memitem:ad49f4cad024db72c966d949c75f1ce4d" id="r_ad49f4cad024db72c966d949c75f1ce4d"><td class="memItemLeft" align="right" valign="top">virtual std::unordered_map&lt; fourdst::atomic::Species, int &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ad49f4cad024db72c966d949c75f1ce4d">stoichiometry</a> () const =0</td></tr>
+<tr class="memdesc:ad49f4cad024db72c966d949c75f1ce4d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Full stoichiometry map for this reaction.  <br /></td></tr>
+<tr class="separator:ad49f4cad024db72c966d949c75f1ce4d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab7888b57507d6d27de6e5fcaea40fff5" id="r_ab7888b57507d6d27de6e5fcaea40fff5"><td class="memItemLeft" align="right" valign="top">virtual int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab7888b57507d6d27de6e5fcaea40fff5">stoichiometry</a> (const fourdst::atomic::Species &amp;species) const =0</td></tr>
+<tr class="memdesc:ab7888b57507d6d27de6e5fcaea40fff5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stoichiometric coefficient for a particular species.  <br /></td></tr>
+<tr class="separator:ab7888b57507d6d27de6e5fcaea40fff5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7ba8c18cd5445aa3499a6fd351183f7a" id="r_a7ba8c18cd5445aa3499a6fd351183f7a"><td class="memItemLeft" align="right" valign="top">virtual uint64_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a7ba8c18cd5445aa3499a6fd351183f7a">hash</a> (uint64_t seed) const =0</td></tr>
+<tr class="memdesc:a7ba8c18cd5445aa3499a6fd351183f7a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stable content-based hash for this reaction.  <br /></td></tr>
+<tr class="separator:a7ba8c18cd5445aa3499a6fd351183f7a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7e06936f9e8bb74e68eaa10e708e5d3c" id="r_a7e06936f9e8bb74e68eaa10e708e5d3c"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c">qValue</a> () const =0</td></tr>
+<tr class="memdesc:a7e06936f9e8bb74e68eaa10e708e5d3c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Q-value of the reaction (typically MeV), positive if exothermic.  <br /></td></tr>
+<tr class="separator:a7e06936f9e8bb74e68eaa10e708e5d3c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae66b446c98add7e00a1d960f4e7c60dd" id="r_ae66b446c98add7e00a1d960f4e7c60dd"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ae66b446c98add7e00a1d960f4e7c60dd">calculate_energy_generation_rate</a> (const double T9, const double rho, const double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td></tr>
+<tr class="memdesc:ae66b446c98add7e00a1d960f4e7c60dd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convenience: energy generation rate from this reaction (double version).  <br /></td></tr>
+<tr class="separator:ae66b446c98add7e00a1d960f4e7c60dd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4282f85c34d6db1994c07e7a40f66d80" id="r_a4282f85c34d6db1994c07e7a40f66d80"><td class="memItemLeft" align="right" valign="top">virtual CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a4282f85c34d6db1994c07e7a40f66d80">calculate_energy_generation_rate</a> (const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td></tr>
+<tr class="memdesc:a4282f85c34d6db1994c07e7a40f66d80"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convenience: AD-enabled energy generation rate (AD version).  <br /></td></tr>
+<tr class="separator:a4282f85c34d6db1994c07e7a40f66d80"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa2b615e764bb005e526ca9327319c735" id="r_aa2b615e764bb005e526ca9327319c735"><td class="memItemLeft" align="right" valign="top">virtual double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#aa2b615e764bb005e526ca9327319c735">calculate_log_rate_partial_deriv_wrt_T9</a> (double T9, double rho, double Ye, double mue, const fourdst::composition::Composition &amp;comp) const =0</td></tr>
+<tr class="memdesc:aa2b615e764bb005e526ca9327319c735"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logarithmic partial derivative of the rate with respect to temperature.  <br /></td></tr>
+<tr class="separator:aa2b615e764bb005e526ca9327319c735"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7f2590eee9f0dfb7b73cd92170a844b7" id="r_a7f2590eee9f0dfb7b73cd92170a844b7"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a7f2590eee9f0dfb7b73cd92170a844b7">type</a> () const =0</td></tr>
+<tr class="memdesc:a7f2590eee9f0dfb7b73cd92170a844b7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Category of this reaction (e.g., REACLIB, WEAK, LOGICAL_REACLIB).  <br /></td></tr>
+<tr class="separator:a7f2590eee9f0dfb7b73cd92170a844b7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab95ce7fb022a9432bdc77f14679221ee" id="r_ab95ce7fb022a9432bdc77f14679221ee"><td class="memItemLeft" align="right" valign="top">virtual std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab95ce7fb022a9432bdc77f14679221ee">clone</a> () const =0</td></tr>
+<tr class="memdesc:ab95ce7fb022a9432bdc77f14679221ee"><td class="mdescLeft">&#160;</td><td class="mdescRight">Polymorphic deep copy.  <br /></td></tr>
+<tr class="separator:ab95ce7fb022a9432bdc77f14679221ee"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6c51c30a0eec2f00c7d1f1c0be44cb0b" id="r_a6c51c30a0eec2f00c7d1f1c0be44cb0b"><td class="memItemLeft" align="right" valign="top">virtual std::optional&lt; std::vector&lt; <a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">RateCoefficientSet</a> &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a6c51c30a0eec2f00c7d1f1c0be44cb0b">getRateCoefficients</a> () const =0</td></tr>
+<tr class="separator:a6c51c30a0eec2f00c7d1f1c0be44cb0b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="friends" name="friends"></a>
+Friends</h2></td></tr>
+<tr class="memitem:a2b05ab608187216fc751bd2e42e8b7d8" id="r_a2b05ab608187216fc751bd2e42e8b7d8"><td class="memItemLeft" align="right" valign="top">std::ostream &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a2b05ab608187216fc751bd2e42e8b7d8">operator&lt;&lt;</a> (std::ostream &amp;os, const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &amp;r)</td></tr>
+<tr class="separator:a2b05ab608187216fc751bd2e42e8b7d8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Represents a single nuclear reaction from a specific data source. </p>
+<p>This class encapsulates all properties of a single nuclear reaction as defined in formats like REACLIB, including reactants, products, Q-value, and rate coefficients from a particular evaluation (source).</p>
+<p>Example: </p><div class="fragment"><div class="line"><span class="comment">// Assuming species and rate coefficients are defined</span></div>
+<div class="line"><a class="code hl_class" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> p_gamma_d(</div>
+<div class="line">    <span class="stringliteral">&quot;H_1_H_1_to_H_2&quot;</span>, <span class="stringliteral">&quot;p(p,g)d&quot;</span>, 1, {H_1, H_1}, {H_2}, 5.493, <span class="stringliteral">&quot;st08&quot;</span>, rate_coeffs</div>
+<div class="line">);</div>
+<div class="line"><span class="keywordtype">double</span> rate = p_gamma_d.<a class="code hl_function" href="classgridfire_1_1reaction_1_1Reaction.html#a83c121480533593adfd68c4a67a649f1">calculate_rate</a>(0.1); <span class="comment">// T9 = 0.1</span></div>
+<div class="ttc" id="aclassgridfire_1_1reaction_1_1Reaction_html"><div class="ttname"><a href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></div><div class="ttdoc">Represents a single nuclear reaction from a specific data source.</div><div class="ttdef"><b>Definition</b> reaction.h:98</div></div>
+<div class="ttc" id="aclassgridfire_1_1reaction_1_1Reaction_html_a83c121480533593adfd68c4a67a649f1"><div class="ttname"><a href="classgridfire_1_1reaction_1_1Reaction.html#a83c121480533593adfd68c4a67a649f1">gridfire::reaction::Reaction::calculate_rate</a></div><div class="ttdeci">virtual double calculate_rate(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const =0</div><div class="ttdoc">Compute the temperature- and composition-dependent reaction rate.</div></div>
+</div><!-- fragment --> </div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="ab1860df84843be70f97469761e11ab6a" name="ab1860df84843be70f97469761e11ab6a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab1860df84843be70f97469761e11ab6a">&#9670;&#160;</a></span>~Reaction()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual gridfire::reaction::Reaction::~Reaction </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Virtual destructor for correct polymorphic cleanup. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="aa13cd9097229fcc99128d9286b8f17e6" name="aa13cd9097229fcc99128d9286b8f17e6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa13cd9097229fcc99128d9286b8f17e6">&#9670;&#160;</a></span>all_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::unordered_set&lt; fourdst::atomic::Species &gt; gridfire::reaction::Reaction::all_species </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Set of all unique species appearing in the reaction. </p>
+<dl class="section return"><dt>Returns</dt><dd>Unordered set of all reactants and products (no duplicates). </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a445777acbbee2032d83a256181a90e3c">gridfire::reaction::ReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a6e567323ca019eadcbb9dbb814ebeb0b">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="a4282f85c34d6db1994c07e7a40f66d80" name="a4282f85c34d6db1994c07e7a40f66d80"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4282f85c34d6db1994c07e7a40f66d80">&#9670;&#160;</a></span>calculate_energy_generation_rate() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual CppAD::AD&lt; double &gt; gridfire::reaction::Reaction::calculate_energy_generation_rate </td>
+          <td>(</td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const CppAD::AD&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>index_to_species_map</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Convenience: AD-enabled energy generation rate (AD version). </p>
+<p>Default implementation multiplies the AD rate by the reaction Q-value. Electron quantities (Ye, mue) are ignored in this default, so override if they contribute.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK as CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density as CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction as CppAD::AD&lt;double&gt; (ignored by default). </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential as CppAD::AD&lt;double&gt; (ignored by default). </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector as CppAD::AD&lt;double&gt; values. </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Mapping from state-vector index to Species. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Energy generation rate as CppAD::AD&lt;double&gt;. </dd></dl>
+
+<p>Reimplemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#af515e3587a1050c4bc59657696be5f9b">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="ae66b446c98add7e00a1d960f4e7c60dd" name="ae66b446c98add7e00a1d960f4e7c60dd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae66b446c98add7e00a1d960f4e7c60dd">&#9670;&#160;</a></span>calculate_energy_generation_rate() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual double gridfire::reaction::Reaction::calculate_energy_generation_rate </td>
+          <td>(</td>
+          <td class="paramtype">const double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const double&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>index_to_species_map</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Convenience: energy generation rate from this reaction (double version). </p>
+<p>Default implementation multiplies the scalar rate by the reaction Q-value. Electron quantities (Ye, mue) are ignored in this default, so override in derived classes if needed. Sign convention follows <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c" title="Q-value of the reaction (typically MeV), positive if exothermic.">qValue()</a>.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK (10^9 K). </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density (g cm^-3). </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction (ignored by default implementation). </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential (ignored by default implementation). </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector. </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Mapping from state-vector index to Species. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Energy generation rate, typically rate * <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c" title="Q-value of the reaction (typically MeV), positive if exothermic.">qValue()</a>. </dd></dl>
+
+<p>Reimplemented in <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a091d6d4aa59f788c97f9b5481f46f1b5">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="aa2b615e764bb005e526ca9327319c735" name="aa2b615e764bb005e526ca9327319c735"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa2b615e764bb005e526ca9327319c735">&#9670;&#160;</a></span>calculate_log_rate_partial_deriv_wrt_T9()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual double gridfire::reaction::Reaction::calculate_log_rate_partial_deriv_wrt_T9 </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logarithmic partial derivative of the rate with respect to temperature. </p>
+<p>Implementations return d(ln rate)/d(ln T9) or an equivalent measure (as documented by the concrete class), evaluated at the provided state.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK (10^9 K). </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density (g cm^-3). </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction. </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential. </td></tr>
+    <tr><td class="paramname">comp</td><td>Composition object providing composition in a convenient form. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The logarithmic temperature derivative of the rate. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ada6ec1ae05b9a92b58e6a4ecdf5a1656">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a9b1363314159eaf9c56aaa233f5eebd6">gridfire::reaction::LogicalReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#ac2d5366d4b5766413db34558dbce3cb3">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="af8303d67df61fc9e31ce054f0e8a3e14" name="af8303d67df61fc9e31ce054f0e8a3e14"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af8303d67df61fc9e31ce054f0e8a3e14">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual CppAD::AD&lt; double &gt; gridfire::reaction::Reaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>index_to_species_map</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>AD-enabled reaction rate for algorithmic differentiation. </p>
+<p>This overload mirrors calculate_rate(double, ...) but operates on CppAD types to enable derivative calculations w.r.t. its inputs.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK as CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density as CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction as CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential as CppAD::AD&lt;double&gt;. </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector as CppAD::AD&lt;double&gt; values. </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Mapping from state-vector index to Species, used to interpret Y. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The reaction rate as a CppAD::AD&lt;double&gt; value. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#afec5ccf7a8fb1ba56c8cc852ce858c5e">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#ab5bdbe13239f1180f32fb0a14a60d0a9">gridfire::reaction::LogicalReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a90ca346e2321516656b83d863416671e">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="a83c121480533593adfd68c4a67a649f1" name="a83c121480533593adfd68c4a67a649f1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a83c121480533593adfd68c4a67a649f1">&#9670;&#160;</a></span>calculate_rate() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual double gridfire::reaction::Reaction::calculate_rate </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>Ye</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>mue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>index_to_species_map</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Compute the temperature- and composition-dependent reaction rate. </p>
+<p>This is the primary interface used by the network to obtain the rate of a single reaction at the given thermodynamic state and composition. The exact units and normalization are defined by the concrete implementation (e.g., REACLIB typically provides NA&lt;sigma v&gt; with units depending on the reaction order). Implementations may use density/electron properties for weak processes or screening, and the composition vector for multi-body reactions.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">T9</td><td>Temperature in GK (10^9 K). </td></tr>
+    <tr><td class="paramname">rho</td><td>Mass density (g cm^-3). May be unused for some reaction types. </td></tr>
+    <tr><td class="paramname">Ye</td><td>Electron fraction. May be unused depending on the reaction type. </td></tr>
+    <tr><td class="paramname">mue</td><td>Electron chemical potential. May be unused depending on the reaction type. </td></tr>
+    <tr><td class="paramname">Y</td><td>Composition vector (molar abundances or number fractions) indexed consistently with index_to_species_map. </td></tr>
+    <tr><td class="paramname">index_to_species_map</td><td>Mapping from state-vector index to Species, used to interpret Y. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The reaction rate for the forward direction, with units/normalization defined by the specific model (implementation must document its convention). </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#acd16b1daf13456b3523362a37b1bf9b0">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#ac21a726884930e6a00792e7c3eb43f42">gridfire::reaction::LogicalReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a05df0657efed55eb4262c7834d81400a">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="ab95ce7fb022a9432bdc77f14679221ee" name="ab95ce7fb022a9432bdc77f14679221ee"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab95ce7fb022a9432bdc77f14679221ee">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &gt; gridfire::reaction::Reaction::clone </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Polymorphic deep copy. </p>
+<dl class="section return"><dt>Returns</dt><dd>A std::unique_ptr owning a new <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> equal to this one. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a54fde02e7010e806136f976ab64b1740">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html#ac3fc463a1cea6854ea989732e1e5f65a">gridfire::reaction::WeakReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#ad113b9cb64c449f9449c4cce4fa64076">gridfire::reaction::LogicalReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#ac10e1451d20876f6eab199e127f213c7">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="a768db057d358240d4825c21869af0792" name="a768db057d358240d4825c21869af0792"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a768db057d358240d4825c21869af0792">&#9670;&#160;</a></span>contains()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual bool gridfire::reaction::Reaction::contains </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>True if the species appears as a reactant or a product. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>Species to test. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Whether the species participates in the reaction (either side). </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a171b690e1abaf23f11a94c39e9f8c944">gridfire::reaction::ReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a745b161968f37873b5d40fe6bf9d2118">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="a2708d2e8f42159df6605a5948b13c4c5" name="a2708d2e8f42159df6605a5948b13c4c5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2708d2e8f42159df6605a5948b13c4c5">&#9670;&#160;</a></span>contains_product()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual bool gridfire::reaction::Reaction::contains_product </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>True if the species appears among the products. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>Species to test. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Whether the species is a product. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a4e4811436d09afaa4a14c51d9af71f88">gridfire::reaction::ReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a957b5bfe70e536290ef677a7c5b6643f">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="ab28bf4f9417ecabcc8350bae449fedd5" name="ab28bf4f9417ecabcc8350bae449fedd5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab28bf4f9417ecabcc8350bae449fedd5">&#9670;&#160;</a></span>contains_reactant()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual bool gridfire::reaction::Reaction::contains_reactant </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>True if the species appears among the reactants. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>Species to test. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Whether the species is a reactant. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a65a12e5f6180873866cfaaf130fd1156">gridfire::reaction::ReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a98095e6536d9a6434c5955f4c169d505">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="a62fc82b29bacc10cfbceaa1571b14525" name="a62fc82b29bacc10cfbceaa1571b14525"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a62fc82b29bacc10cfbceaa1571b14525">&#9670;&#160;</a></span>countProductOccurrences()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual size_t gridfire::reaction::Reaction::countProductOccurrences </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#abe3ab72b2577cbe0f87436b063ce812c">gridfire::reaction::ReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aeba08ed8204fc4999dc0324076d67d2a">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="a036773e4dc917facbf2308dbbe853633" name="a036773e4dc917facbf2308dbbe853633"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a036773e4dc917facbf2308dbbe853633">&#9670;&#160;</a></span>countReactantOccurrences()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual size_t gridfire::reaction::Reaction::countReactantOccurrences </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a79928f9c52822202b3156bd145e35ad8">gridfire::reaction::ReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#acfc3740ed0aa72986b2c1bc2666974d6">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="a6c51c30a0eec2f00c7d1f1c0be44cb0b" name="a6c51c30a0eec2f00c7d1f1c0be44cb0b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6c51c30a0eec2f00c7d1f1c0be44cb0b">&#9670;&#160;</a></span>getRateCoefficients()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::optional&lt; std::vector&lt; <a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">RateCoefficientSet</a> &gt; &gt; gridfire::reaction::Reaction::getRateCoefficients </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#aefd0436ae72880358214d5b79c9c79eb">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#adfef828853172ca573395160e2ce9c49">gridfire::reaction::LogicalReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a768eed406cc08057ed09e5daf5494650">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="a7ba8c18cd5445aa3499a6fd351183f7a" name="a7ba8c18cd5445aa3499a6fd351183f7a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7ba8c18cd5445aa3499a6fd351183f7a">&#9670;&#160;</a></span>hash()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual uint64_t gridfire::reaction::Reaction::hash </td>
+          <td>(</td>
+          <td class="paramtype">uint64_t&#160;</td>
+          <td class="paramname"><em>seed</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Stable content-based hash for this reaction. </p>
+<p>Intended for use in caches, sets, and order-independent hashing of <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> collections. Implementations should produce the same value across processes for the same content and seed. </p><dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">seed</td><td>Seed value to initialize/mix into the hash. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>64-bit hash value. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a661dd461e51c37133f7f9931389fd3cc">gridfire::reaction::ReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#ad2ba6b584cb2df7c15633fca81ce6af1">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="a94b92308b9619ec20c690e55157786ba" name="a94b92308b9619ec20c690e55157786ba"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a94b92308b9619ec20c690e55157786ba">&#9670;&#160;</a></span>id()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::string_view gridfire::reaction::Reaction::id </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>A stable, unique identifier for this reaction instance. </p>
+<dl class="section return"><dt>Returns</dt><dd>String view of the reaction ID (stable across runs and suitable for lookups). </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a06312f834439ccf93012dea53cab47ce">gridfire::reaction::ReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#ad01a15d95878c9edbf57cd9045c4413b">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="a3906a668410e02239f9031b5fc580214" name="a3906a668410e02239f9031b5fc580214"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3906a668410e02239f9031b5fc580214">&#9670;&#160;</a></span>is_reverse()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual bool gridfire::reaction::Reaction::is_reverse </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Whether this object represents a reverse (backward) rate. </p>
+<p>Implementations may pair forward/reverse rates for detailed balance. This flag indicates that the parameterization corresponds to the reverse direction. </p><dl class="section return"><dt>Returns</dt><dd>True for a reverse rate, false for a forward rate. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a181b2c75af1f2701c43594c5bb2bac2d">gridfire::reaction::ReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a90b62d922d91832859516450cf8e3876">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="ae2a1b0395ac127c792a8049cd0bcc249" name="ae2a1b0395ac127c792a8049cd0bcc249"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae2a1b0395ac127c792a8049cd0bcc249">&#9670;&#160;</a></span>num_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual size_t gridfire::reaction::Reaction::num_species </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of unique species involved in the reaction. </p>
+<dl class="section return"><dt>Returns</dt><dd>Count of distinct species across reactants and products. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a9205126955ad38f56e8aca3112bc150a">gridfire::reaction::ReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a1210917ca1727ea474bb606cf8279edb">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="a0d16572ae2b664374d32ee6c4e22123a" name="a0d16572ae2b664374d32ee6c4e22123a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0d16572ae2b664374d32ee6c4e22123a">&#9670;&#160;</a></span>product_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::unordered_set&lt; fourdst::atomic::Species &gt; gridfire::reaction::Reaction::product_species </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Set of unique product species. </p>
+<dl class="section return"><dt>Returns</dt><dd>Unordered set of product species (no duplicates). </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a67c8fa4d5929c7a8cbca9b3d9dd2b704">gridfire::reaction::ReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a5c60feacb0ac48b35323d9f688315316">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="a3d7451045d8df41ea98b5e419e0e5ab0" name="a3d7451045d8df41ea98b5e419e0e5ab0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3d7451045d8df41ea98b5e419e0e5ab0">&#9670;&#160;</a></span>products()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::reaction::Reaction::products </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Ordered list of product species. </p>
+<p>Multiplicity is represented by duplicates if applicable. </p><dl class="section return"><dt>Returns</dt><dd>Const reference to the vector of products. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a5f563b99bb550d5bafa2a989502de019">gridfire::reaction::ReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aed0ea28ed3ba96a9f86aa9db947ec01c">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="a7e06936f9e8bb74e68eaa10e708e5d3c" name="a7e06936f9e8bb74e68eaa10e708e5d3c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7e06936f9e8bb74e68eaa10e708e5d3c">&#9670;&#160;</a></span>qValue()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual double gridfire::reaction::Reaction::qValue </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Q-value of the reaction (typically MeV), positive if exothermic. </p>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> Q-value used for energy accounting. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae47931948f12816eb890c0db4fff4d68">gridfire::reaction::ReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#afedb724bf9f1c8fc91d853f2bedb10cb">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="a82c14096308cdc9126ab6d9667febcd2" name="a82c14096308cdc9126ab6d9667febcd2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a82c14096308cdc9126ab6d9667febcd2">&#9670;&#160;</a></span>reactant_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::unordered_set&lt; fourdst::atomic::Species &gt; gridfire::reaction::Reaction::reactant_species </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Set of unique reactant species. </p>
+<dl class="section return"><dt>Returns</dt><dd>Unordered set of reactant species (no duplicates). </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ad85ca288289b25d482cbb8e3ff270028">gridfire::reaction::ReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aae06ff559026e3ce242a42cdd888c5a0">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="ac7b08c61cdc97268b9442afec4d08dad" name="ac7b08c61cdc97268b9442afec4d08dad"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac7b08c61cdc97268b9442afec4d08dad">&#9670;&#160;</a></span>reactants()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual const std::vector&lt; fourdst::atomic::Species &gt; &amp; gridfire::reaction::Reaction::reactants </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Ordered list of reactant species. </p>
+<p>Multiplicity is represented by duplicates, e.g., (p, p) would list H1 twice. </p><dl class="section return"><dt>Returns</dt><dd>Const reference to the vector of reactants. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ad095aba46860fec0e68386bf04f7f142">gridfire::reaction::ReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a1362d46630f30203027093e35883d1b1">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="ad49f4cad024db72c966d949c75f1ce4d" name="ad49f4cad024db72c966d949c75f1ce4d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad49f4cad024db72c966d949c75f1ce4d">&#9670;&#160;</a></span>stoichiometry() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::unordered_map&lt; fourdst::atomic::Species, int &gt; gridfire::reaction::Reaction::stoichiometry </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Full stoichiometry map for this reaction. </p>
+<p>Coefficients are negative for reactants and positive for products; multiplicity is reflected in the magnitude (e.g., 2H -&gt; He gives H: -2, He: +1). </p><dl class="section return"><dt>Returns</dt><dd>Map from Species to integer stoichiometric coefficient. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a0f629cbfe95dc5643b5e3724be0db2f9">gridfire::reaction::ReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a8bf7dc26d9f1375625df99bceba08a44">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="ab7888b57507d6d27de6e5fcaea40fff5" name="ab7888b57507d6d27de6e5fcaea40fff5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab7888b57507d6d27de6e5fcaea40fff5">&#9670;&#160;</a></span>stoichiometry() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual int gridfire::reaction::Reaction::stoichiometry </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Stoichiometric coefficient for a particular species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>Species for which to query the coefficient. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Negative for reactants, positive for products, zero if absent. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a57b2695d152360a6ba08776cc760e3a1">gridfire::reaction::ReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a1f4acfdb39bb861aaee9f3f28cfc406e">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<a id="a7f2590eee9f0dfb7b73cd92170a844b7" name="a7f2590eee9f0dfb7b73cd92170a844b7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7f2590eee9f0dfb7b73cd92170a844b7">&#9670;&#160;</a></span>type()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a> gridfire::reaction::Reaction::type </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Category of this reaction (e.g., REACLIB, WEAK, LOGICAL_REACLIB). </p>
+<dl class="section return"><dt>Returns</dt><dd>Enumerated reaction type for runtime dispatch and filtering. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a3c0fbdd07f9a837bd031c5bdc58e0e8f">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html#af191b4afdf41a9916ecf9647e88d8037">gridfire::reaction::WeakReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#acbfa2d4e23dff6641be21cc1e754be15">gridfire::reaction::LogicalReaclibReaction</a>, and <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aade329265a26bdc005c0793ba7a36ab2">gridfire::rates::weak::WeakReaction</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Friends And Related Symbol Documentation</h2>
+<a id="a2b05ab608187216fc751bd2e42e8b7d8" name="a2b05ab608187216fc751bd2e42e8b7d8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2b05ab608187216fc751bd2e42e8b7d8">&#9670;&#160;</a></span>operator&lt;&lt;</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::ostream &amp; operator&lt;&lt; </td>
+          <td>(</td>
+          <td class="paramtype">std::ostream &amp;&#160;</td>
+          <td class="paramname"><em>os</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>r</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">friend</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/reaction/<a class="el" href="reaction_8h.html">reaction.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1reaction.html">reaction</a></li><li class="navelem"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
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new file mode 100644
index 00000000..e6487941
--- /dev/null
+++ b/docs/html/classgridfire_1_1reaction_1_1Reaction.js
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+var classgridfire_1_1reaction_1_1Reaction =
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+    [ "calculate_energy_generation_rate", "classgridfire_1_1reaction_1_1Reaction.html#a4282f85c34d6db1994c07e7a40f66d80", null ],
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+    [ "calculate_rate", "classgridfire_1_1reaction_1_1Reaction.html#af8303d67df61fc9e31ce054f0e8a3e14", null ],
+    [ "calculate_rate", "classgridfire_1_1reaction_1_1Reaction.html#a83c121480533593adfd68c4a67a649f1", null ],
+    [ "clone", "classgridfire_1_1reaction_1_1Reaction.html#ab95ce7fb022a9432bdc77f14679221ee", null ],
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+    [ "contains_reactant", "classgridfire_1_1reaction_1_1Reaction.html#ab28bf4f9417ecabcc8350bae449fedd5", null ],
+    [ "countProductOccurrences", "classgridfire_1_1reaction_1_1Reaction.html#a62fc82b29bacc10cfbceaa1571b14525", null ],
+    [ "countReactantOccurrences", "classgridfire_1_1reaction_1_1Reaction.html#a036773e4dc917facbf2308dbbe853633", null ],
+    [ "getRateCoefficients", "classgridfire_1_1reaction_1_1Reaction.html#a6c51c30a0eec2f00c7d1f1c0be44cb0b", null ],
+    [ "hash", "classgridfire_1_1reaction_1_1Reaction.html#a7ba8c18cd5445aa3499a6fd351183f7a", null ],
+    [ "id", "classgridfire_1_1reaction_1_1Reaction.html#a94b92308b9619ec20c690e55157786ba", null ],
+    [ "is_reverse", "classgridfire_1_1reaction_1_1Reaction.html#a3906a668410e02239f9031b5fc580214", null ],
+    [ "num_species", "classgridfire_1_1reaction_1_1Reaction.html#ae2a1b0395ac127c792a8049cd0bcc249", null ],
+    [ "product_species", "classgridfire_1_1reaction_1_1Reaction.html#a0d16572ae2b664374d32ee6c4e22123a", null ],
+    [ "products", "classgridfire_1_1reaction_1_1Reaction.html#a3d7451045d8df41ea98b5e419e0e5ab0", null ],
+    [ "qValue", "classgridfire_1_1reaction_1_1Reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c", null ],
+    [ "reactant_species", "classgridfire_1_1reaction_1_1Reaction.html#a82c14096308cdc9126ab6d9667febcd2", null ],
+    [ "reactants", "classgridfire_1_1reaction_1_1Reaction.html#ac7b08c61cdc97268b9442afec4d08dad", null ],
+    [ "stoichiometry", "classgridfire_1_1reaction_1_1Reaction.html#ad49f4cad024db72c966d949c75f1ce4d", null ],
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#ad9dbc77e93467c95ebda908b53e9a9d1">add_reaction</a>(const Reaction &amp;reaction)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#ad7e95562ea0860bf492b447341f41fb5">add_reaction</a>(std::unique_ptr&lt; Reaction &gt; &amp;&amp;reaction)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a228f2a00f46a6ee01be887490a722613">begin</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#adb73fe9ff0178359409e2bea46a620c2">begin</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#aa8e0d65aafc6e0320690b4906e1bf300">clear</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#ae5f8078e77a700a8356487fbd69ba387">contains</a>(const std::string_view &amp;id) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a2f6b165c86634a68f35032c2267255f8">contains</a>(const Reaction &amp;reaction) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a4bdf50219d686a6cbc0b3cc5365dc18e">contains_product</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a256998eddf292f744d51cdc3e178d4c2">contains_reactant</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a5b872a8519740a6d06cfaed03784826a">contains_species</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a7cfce57192993e71c8437a64030caa2d">empty</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#abae9fbc4b4306479a6cd3173ac628987">end</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a436f9c4b8f8a4e115b19728d57d8e105">end</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a6a4836776f5dd00158d2336e5bcc3222">extend</a>(const ReactionSet &amp;other)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a85314ee0dde7e12915f63237086b5eb6">get</a>(const std::string_view &amp;id) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a133ad8cca6a75d31ef8efe67801aef1b">getReactionSetSpecies</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#ad28907fc08de978461d68cc5b77a3a99">hash</a>(uint64_t seed) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#af92e3003b2a3606b48ab857cdedc3111">m_id</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#aff5ae284012009164d4b3033577709eb">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a4200939ccf088dd83c3d264df171d568">m_reactionHashes</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a62965c04447909462bb4f2112661ef44">m_reactionNameMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#abd6feda1b3f65a6177904755581f6efe">m_reactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a529189f464aebc6b5ac5c717f70e14b8">operator!=</a>(const ReactionSet &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a5a5e6ed364794f872c2c819536e24c20">operator&lt;&lt;</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#aac890bf7fdf689890d765ff67489520a">operator=</a>(const ReactionSet &amp;other)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a4e572e823a80b905e7d002b612123135">operator==</a>(const ReactionSet &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a4057f74ae647b691f4f61f150553c52b">operator[]</a>(size_t index) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a896b4e492ef596d9174aeda4b59c46cd">operator[]</a>(const std::string_view &amp;id) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a9a63306b92e23e3651c955ab614084de">ReactionSet</a>(std::vector&lt; std::unique_ptr&lt; Reaction &gt; &gt; &amp;&amp;reactions)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a789dee5d93810b85062e59508fe0adea">ReactionSet</a>(const std::vector&lt; Reaction * &gt; &amp;reactions)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#ab9edff40316b42ce41b2f895962c1041">ReactionSet</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#acfe2341ae1f016ad82098b6f5a1efc45">ReactionSet</a>(const ReactionSet &amp;other)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a1177193b1e46b4e5be630028883ab8dd">remove_reaction</a>(const Reaction &amp;reaction)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#af14cf34d7367cb6a6be5191724c2d4cf">size</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="classgridfire_1_1reaction_1_1ReactionSet-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::reaction::ReactionSet Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;reaction.h&gt;</code></p>
+<div class="dynheader">
+Collaboration diagram for gridfire::reaction::ReactionSet:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1reaction_1_1ReactionSet__coll__graph.svg" width="100%" height="493"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a9a63306b92e23e3651c955ab614084de" id="r_a9a63306b92e23e3651c955ab614084de"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a9a63306b92e23e3651c955ab614084de">ReactionSet</a> (std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &gt; &gt; &amp;&amp;reactions)</td></tr>
+<tr class="memdesc:a9a63306b92e23e3651c955ab614084de"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> from a vector of reactions.  <br /></td></tr>
+<tr class="separator:a9a63306b92e23e3651c955ab614084de"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a789dee5d93810b85062e59508fe0adea" id="r_a789dee5d93810b85062e59508fe0adea"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a789dee5d93810b85062e59508fe0adea">ReactionSet</a> (const std::vector&lt; <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> * &gt; &amp;reactions)</td></tr>
+<tr class="separator:a789dee5d93810b85062e59508fe0adea"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab9edff40316b42ce41b2f895962c1041" id="r_ab9edff40316b42ce41b2f895962c1041"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#ab9edff40316b42ce41b2f895962c1041">ReactionSet</a> ()</td></tr>
+<tr class="separator:ab9edff40316b42ce41b2f895962c1041"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acfe2341ae1f016ad82098b6f5a1efc45" id="r_acfe2341ae1f016ad82098b6f5a1efc45"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#acfe2341ae1f016ad82098b6f5a1efc45">ReactionSet</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> &amp;other)</td></tr>
+<tr class="memdesc:acfe2341ae1f016ad82098b6f5a1efc45"><td class="mdescLeft">&#160;</td><td class="mdescRight">Copy constructor.  <br /></td></tr>
+<tr class="separator:acfe2341ae1f016ad82098b6f5a1efc45"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aac890bf7fdf689890d765ff67489520a" id="r_aac890bf7fdf689890d765ff67489520a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#aac890bf7fdf689890d765ff67489520a">operator=</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> &amp;other)</td></tr>
+<tr class="memdesc:aac890bf7fdf689890d765ff67489520a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Copy assignment operator.  <br /></td></tr>
+<tr class="separator:aac890bf7fdf689890d765ff67489520a"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:ad9dbc77e93467c95ebda908b53e9a9d1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Adds a reaction to the set.  <br /></td></tr>
+<tr class="separator:ad9dbc77e93467c95ebda908b53e9a9d1"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:ad7e95562ea0860bf492b447341f41fb5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6a4836776f5dd00158d2336e5bcc3222" id="r_a6a4836776f5dd00158d2336e5bcc3222"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a6a4836776f5dd00158d2336e5bcc3222">extend</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> &amp;other)</td></tr>
+<tr class="separator:a6a4836776f5dd00158d2336e5bcc3222"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a85314ee0dde7e12915f63237086b5eb6"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a1177193b1e46b4e5be630028883ab8dd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Removes a reaction from the set.  <br /></td></tr>
+<tr class="separator:a1177193b1e46b4e5be630028883ab8dd"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:ae5f8078e77a700a8356487fbd69ba387"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the set contains a reaction with the given ID.  <br /></td></tr>
+<tr class="separator:ae5f8078e77a700a8356487fbd69ba387"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2f6b165c86634a68f35032c2267255f8" id="r_a2f6b165c86634a68f35032c2267255f8"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a2f6b165c86634a68f35032c2267255f8">contains</a> (const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &amp;reaction) const</td></tr>
+<tr class="memdesc:a2f6b165c86634a68f35032c2267255f8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if the set contains the given reaction.  <br /></td></tr>
+<tr class="separator:a2f6b165c86634a68f35032c2267255f8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af14cf34d7367cb6a6be5191724c2d4cf" id="r_af14cf34d7367cb6a6be5191724c2d4cf"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#af14cf34d7367cb6a6be5191724c2d4cf">size</a> () const</td></tr>
+<tr class="memdesc:af14cf34d7367cb6a6be5191724c2d4cf"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gets the number of reactions in the set.  <br /></td></tr>
+<tr class="separator:af14cf34d7367cb6a6be5191724c2d4cf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7cfce57192993e71c8437a64030caa2d" id="r_a7cfce57192993e71c8437a64030caa2d"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a7cfce57192993e71c8437a64030caa2d">empty</a> () const</td></tr>
+<tr class="separator:a7cfce57192993e71c8437a64030caa2d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:aa8e0d65aafc6e0320690b4906e1bf300"><td class="mdescLeft">&#160;</td><td class="mdescRight">Removes all reactions from the set.  <br /></td></tr>
+<tr class="separator:aa8e0d65aafc6e0320690b4906e1bf300"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5b872a8519740a6d06cfaed03784826a" id="r_a5b872a8519740a6d06cfaed03784826a"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a5b872a8519740a6d06cfaed03784826a">contains_species</a> (const fourdst::atomic::Species &amp;species) const</td></tr>
+<tr class="memdesc:a5b872a8519740a6d06cfaed03784826a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if any reaction in the set involves the given species.  <br /></td></tr>
+<tr class="separator:a5b872a8519740a6d06cfaed03784826a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a256998eddf292f744d51cdc3e178d4c2" id="r_a256998eddf292f744d51cdc3e178d4c2"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a256998eddf292f744d51cdc3e178d4c2">contains_reactant</a> (const fourdst::atomic::Species &amp;species) const</td></tr>
+<tr class="memdesc:a256998eddf292f744d51cdc3e178d4c2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if any reaction in the set contains the given species as a reactant.  <br /></td></tr>
+<tr class="separator:a256998eddf292f744d51cdc3e178d4c2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4bdf50219d686a6cbc0b3cc5365dc18e" id="r_a4bdf50219d686a6cbc0b3cc5365dc18e"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a4bdf50219d686a6cbc0b3cc5365dc18e">contains_product</a> (const fourdst::atomic::Species &amp;species) const</td></tr>
+<tr class="memdesc:a4bdf50219d686a6cbc0b3cc5365dc18e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if any reaction in the set contains the given species as a product.  <br /></td></tr>
+<tr class="separator:a4bdf50219d686a6cbc0b3cc5365dc18e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4057f74ae647b691f4f61f150553c52b" id="r_a4057f74ae647b691f4f61f150553c52b"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a4057f74ae647b691f4f61f150553c52b">operator[]</a> (size_t index) const</td></tr>
+<tr class="memdesc:a4057f74ae647b691f4f61f150553c52b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Accesses a reaction by its index.  <br /></td></tr>
+<tr class="separator:a4057f74ae647b691f4f61f150553c52b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a896b4e492ef596d9174aeda4b59c46cd" id="r_a896b4e492ef596d9174aeda4b59c46cd"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a896b4e492ef596d9174aeda4b59c46cd">operator[]</a> (const std::string_view &amp;id) const</td></tr>
+<tr class="memdesc:a896b4e492ef596d9174aeda4b59c46cd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Accesses a reaction by its ID.  <br /></td></tr>
+<tr class="separator:a896b4e492ef596d9174aeda4b59c46cd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4e572e823a80b905e7d002b612123135" id="r_a4e572e823a80b905e7d002b612123135"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a4e572e823a80b905e7d002b612123135">operator==</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> &amp;other) const</td></tr>
+<tr class="memdesc:a4e572e823a80b905e7d002b612123135"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compares this set with another for equality.  <br /></td></tr>
+<tr class="separator:a4e572e823a80b905e7d002b612123135"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a529189f464aebc6b5ac5c717f70e14b8" id="r_a529189f464aebc6b5ac5c717f70e14b8"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a529189f464aebc6b5ac5c717f70e14b8">operator!=</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> &amp;other) const</td></tr>
+<tr class="memdesc:a529189f464aebc6b5ac5c717f70e14b8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compares this set with another for inequality.  <br /></td></tr>
+<tr class="separator:a529189f464aebc6b5ac5c717f70e14b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad28907fc08de978461d68cc5b77a3a99" id="r_ad28907fc08de978461d68cc5b77a3a99"><td class="memItemLeft" align="right" valign="top">uint64_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#ad28907fc08de978461d68cc5b77a3a99">hash</a> (uint64_t seed) const</td></tr>
+<tr class="memdesc:ad28907fc08de978461d68cc5b77a3a99"><td class="mdescLeft">&#160;</td><td class="mdescRight">Computes a hash for the entire set.  <br /></td></tr>
+<tr class="separator:ad28907fc08de978461d68cc5b77a3a99"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a133ad8cca6a75d31ef8efe67801aef1b" id="r_a133ad8cca6a75d31ef8efe67801aef1b"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a133ad8cca6a75d31ef8efe67801aef1b">getReactionSetSpecies</a> () const</td></tr>
+<tr class="separator:a133ad8cca6a75d31ef8efe67801aef1b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr><td colspan="2"><div class="groupHeader">Iterators</div></td></tr>
+<tr><td colspan="2"><div class="groupText"><p>Provides iterators to loop over the reactions in the set. </p>
+</div></td></tr>
+<tr class="memitem:a228f2a00f46a6ee01be887490a722613" id="r_a228f2a00f46a6ee01be887490a722613"><td class="memItemLeft" align="right" valign="top">auto&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a228f2a00f46a6ee01be887490a722613">begin</a> ()</td></tr>
+<tr class="separator:a228f2a00f46a6ee01be887490a722613"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adb73fe9ff0178359409e2bea46a620c2" id="r_adb73fe9ff0178359409e2bea46a620c2"><td class="memItemLeft" align="right" valign="top">auto&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#adb73fe9ff0178359409e2bea46a620c2">begin</a> () const</td></tr>
+<tr class="separator:adb73fe9ff0178359409e2bea46a620c2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abae9fbc4b4306479a6cd3173ac628987" id="r_abae9fbc4b4306479a6cd3173ac628987"><td class="memItemLeft" align="right" valign="top">auto&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#abae9fbc4b4306479a6cd3173ac628987">end</a> ()</td></tr>
+<tr class="separator:abae9fbc4b4306479a6cd3173ac628987"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a436f9c4b8f8a4e115b19728d57d8e105" id="r_a436f9c4b8f8a4e115b19728d57d8e105"><td class="memItemLeft" align="right" valign="top">auto&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a436f9c4b8f8a4e115b19728d57d8e105">end</a> () const</td></tr>
+<tr class="separator:a436f9c4b8f8a4e115b19728d57d8e105"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:aff5ae284012009164d4b3033577709eb" id="r_aff5ae284012009164d4b3033577709eb"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#aff5ae284012009164d4b3033577709eb">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="separator:aff5ae284012009164d4b3033577709eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abd6feda1b3f65a6177904755581f6efe" id="r_abd6feda1b3f65a6177904755581f6efe"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#abd6feda1b3f65a6177904755581f6efe">m_reactions</a></td></tr>
+<tr class="separator:abd6feda1b3f65a6177904755581f6efe"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af92e3003b2a3606b48ab857cdedc3111" id="r_af92e3003b2a3606b48ab857cdedc3111"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#af92e3003b2a3606b48ab857cdedc3111">m_id</a></td></tr>
+<tr class="separator:af92e3003b2a3606b48ab857cdedc3111"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a62965c04447909462bb4f2112661ef44" id="r_a62965c04447909462bb4f2112661ef44"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; std::string, size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a62965c04447909462bb4f2112661ef44">m_reactionNameMap</a></td></tr>
+<tr class="memdesc:a62965c04447909462bb4f2112661ef44"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maps reaction IDs to <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> objects for quick lookup.  <br /></td></tr>
+<tr class="separator:a62965c04447909462bb4f2112661ef44"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4200939ccf088dd83c3d264df171d568" id="r_a4200939ccf088dd83c3d264df171d568"><td class="memItemLeft" align="right" valign="top">std::unordered_set&lt; size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a4200939ccf088dd83c3d264df171d568">m_reactionHashes</a></td></tr>
+<tr class="separator:a4200939ccf088dd83c3d264df171d568"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="friends" name="friends"></a>
+Friends</h2></td></tr>
+<tr class="memitem:a5a5e6ed364794f872c2c819536e24c20" id="r_a5a5e6ed364794f872c2c819536e24c20"><td class="memItemLeft" align="right" valign="top">std::ostream &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a5a5e6ed364794f872c2c819536e24c20">operator&lt;&lt;</a> (std::ostream &amp;os, const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> &amp;rs)</td></tr>
+<tr class="separator:a5a5e6ed364794f872c2c819536e24c20"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a9a63306b92e23e3651c955ab614084de" name="a9a63306b92e23e3651c955ab614084de"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9a63306b92e23e3651c955ab614084de">&#9670;&#160;</a></span>ReactionSet() <span class="overload">[1/4]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::reaction::ReactionSet::ReactionSet </td>
+          <td>(</td>
+          <td class="paramtype">std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &gt; &gt; &amp;&amp;&#160;</td>
+          <td class="paramname"><em>reactions</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructs a <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> from a vector of reactions. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The initial vector of <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> objects. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a789dee5d93810b85062e59508fe0adea" name="a789dee5d93810b85062e59508fe0adea"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a789dee5d93810b85062e59508fe0adea">&#9670;&#160;</a></span>ReactionSet() <span class="overload">[2/4]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::reaction::ReactionSet::ReactionSet </td>
+          <td>(</td>
+          <td class="paramtype">const std::vector&lt; <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> * &gt; &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab9edff40316b42ce41b2f895962c1041" name="ab9edff40316b42ce41b2f895962c1041"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab9edff40316b42ce41b2f895962c1041">&#9670;&#160;</a></span>ReactionSet() <span class="overload">[3/4]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::reaction::ReactionSet::ReactionSet </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="acfe2341ae1f016ad82098b6f5a1efc45" name="acfe2341ae1f016ad82098b6f5a1efc45"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acfe2341ae1f016ad82098b6f5a1efc45">&#9670;&#160;</a></span>ReactionSet() <span class="overload">[4/4]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::reaction::ReactionSet::ReactionSet </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Copy constructor. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>The <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> to copy. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ad9dbc77e93467c95ebda908b53e9a9d1" name="ad9dbc77e93467c95ebda908b53e9a9d1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad9dbc77e93467c95ebda908b53e9a9d1">&#9670;&#160;</a></span>add_reaction() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::reaction::ReactionSet::add_reaction </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Adds a reaction to the set. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> to add. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="ad7e95562ea0860bf492b447341f41fb5" name="ad7e95562ea0860bf492b447341f41fb5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad7e95562ea0860bf492b447341f41fb5">&#9670;&#160;</a></span>add_reaction() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::reaction::ReactionSet::add_reaction </td>
+          <td>(</td>
+          <td class="paramtype">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &gt; &amp;&amp;&#160;</td>
+          <td class="paramname"><em>reaction</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a228f2a00f46a6ee01be887490a722613" name="a228f2a00f46a6ee01be887490a722613"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a228f2a00f46a6ee01be887490a722613">&#9670;&#160;</a></span>begin() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::reaction::ReactionSet::begin </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="adb73fe9ff0178359409e2bea46a620c2" name="adb73fe9ff0178359409e2bea46a620c2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adb73fe9ff0178359409e2bea46a620c2">&#9670;&#160;</a></span>begin() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::reaction::ReactionSet::begin </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aa8e0d65aafc6e0320690b4906e1bf300" name="aa8e0d65aafc6e0320690b4906e1bf300"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa8e0d65aafc6e0320690b4906e1bf300">&#9670;&#160;</a></span>clear()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::reaction::ReactionSet::clear </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Removes all reactions from the set. </p>
+
+</div>
+</div>
+<a id="a2f6b165c86634a68f35032c2267255f8" name="a2f6b165c86634a68f35032c2267255f8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2f6b165c86634a68f35032c2267255f8">&#9670;&#160;</a></span>contains() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReactionSet::contains </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Checks if the set contains the given reaction. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> to find. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the reaction is in the set, false otherwise. </dd></dl>
+
+</div>
+</div>
+<a id="ae5f8078e77a700a8356487fbd69ba387" name="ae5f8078e77a700a8356487fbd69ba387"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae5f8078e77a700a8356487fbd69ba387">&#9670;&#160;</a></span>contains() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReactionSet::contains </td>
+          <td>(</td>
+          <td class="paramtype">const std::string_view &amp;&#160;</td>
+          <td class="paramname"><em>id</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Checks if the set contains a reaction with the given ID. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">id</td><td>The ID of the reaction to find. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the reaction is in the set, false otherwise. </dd></dl>
+
+</div>
+</div>
+<a id="a4bdf50219d686a6cbc0b3cc5365dc18e" name="a4bdf50219d686a6cbc0b3cc5365dc18e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4bdf50219d686a6cbc0b3cc5365dc18e">&#9670;&#160;</a></span>contains_product()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReactionSet::contains_product </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Checks if any reaction in the set contains the given species as a product. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to check for. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the species is a product in any reaction. </dd></dl>
+
+</div>
+</div>
+<a id="a256998eddf292f744d51cdc3e178d4c2" name="a256998eddf292f744d51cdc3e178d4c2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a256998eddf292f744d51cdc3e178d4c2">&#9670;&#160;</a></span>contains_reactant()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReactionSet::contains_reactant </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Checks if any reaction in the set contains the given species as a reactant. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to check for. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the species is a reactant in any reaction. </dd></dl>
+
+</div>
+</div>
+<a id="a5b872a8519740a6d06cfaed03784826a" name="a5b872a8519740a6d06cfaed03784826a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5b872a8519740a6d06cfaed03784826a">&#9670;&#160;</a></span>contains_species()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReactionSet::contains_species </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Checks if any reaction in the set involves the given species. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">species</td><td>The species to check for. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the species is involved in any reaction. </dd></dl>
+
+</div>
+</div>
+<a id="a7cfce57192993e71c8437a64030caa2d" name="a7cfce57192993e71c8437a64030caa2d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7cfce57192993e71c8437a64030caa2d">&#9670;&#160;</a></span>empty()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReactionSet::empty </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="abae9fbc4b4306479a6cd3173ac628987" name="abae9fbc4b4306479a6cd3173ac628987"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abae9fbc4b4306479a6cd3173ac628987">&#9670;&#160;</a></span>end() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::reaction::ReactionSet::end </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a436f9c4b8f8a4e115b19728d57d8e105" name="a436f9c4b8f8a4e115b19728d57d8e105"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a436f9c4b8f8a4e115b19728d57d8e105">&#9670;&#160;</a></span>end() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">auto gridfire::reaction::ReactionSet::end </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a6a4836776f5dd00158d2336e5bcc3222" name="a6a4836776f5dd00158d2336e5bcc3222"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6a4836776f5dd00158d2336e5bcc3222">&#9670;&#160;</a></span>extend()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::reaction::ReactionSet::extend </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a85314ee0dde7e12915f63237086b5eb6" name="a85314ee0dde7e12915f63237086b5eb6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a85314ee0dde7e12915f63237086b5eb6">&#9670;&#160;</a></span>get()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::optional&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &gt; &gt; gridfire::reaction::ReactionSet::get </td>
+          <td>(</td>
+          <td class="paramtype">const std::string_view &amp;&#160;</td>
+          <td class="paramname"><em>id</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a133ad8cca6a75d31ef8efe67801aef1b" name="a133ad8cca6a75d31ef8efe67801aef1b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a133ad8cca6a75d31ef8efe67801aef1b">&#9670;&#160;</a></span>getReactionSetSpecies()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_set&lt; Species &gt; gridfire::reaction::ReactionSet::getReactionSetSpecies </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ad28907fc08de978461d68cc5b77a3a99" name="ad28907fc08de978461d68cc5b77a3a99"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad28907fc08de978461d68cc5b77a3a99">&#9670;&#160;</a></span>hash()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">uint64_t gridfire::reaction::ReactionSet::hash </td>
+          <td>(</td>
+          <td class="paramtype">uint64_t&#160;</td>
+          <td class="paramname"><em>seed</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Computes a hash for the entire set. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">seed</td><td>The seed for the hash function. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A 64-bit hash value.</dd></dl>
+<p>The algorithm computes the hash of each individual reaction, sorts the hashes, and then computes a final hash over the sorted list of hashes. This ensures the hash is order-independent. </p>
+
+</div>
+</div>
+<a id="a529189f464aebc6b5ac5c717f70e14b8" name="a529189f464aebc6b5ac5c717f70e14b8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a529189f464aebc6b5ac5c717f70e14b8">&#9670;&#160;</a></span>operator!=()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReactionSet::operator!= </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Compares this set with another for inequality. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>The other <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> to compare with. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the sets are not equal. </dd></dl>
+
+</div>
+</div>
+<a id="aac890bf7fdf689890d765ff67489520a" name="aac890bf7fdf689890d765ff67489520a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aac890bf7fdf689890d765ff67489520a">&#9670;&#160;</a></span>operator=()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> &amp; gridfire::reaction::ReactionSet::operator= </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Copy assignment operator. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>The <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> to assign from. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A reference to this <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a>. </dd></dl>
+
+</div>
+</div>
+<a id="a4e572e823a80b905e7d002b612123135" name="a4e572e823a80b905e7d002b612123135"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4e572e823a80b905e7d002b612123135">&#9670;&#160;</a></span>operator==()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::reaction::ReactionSet::operator== </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Compares this set with another for equality. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>The other <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> to compare with. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the sets are equal (same size and hash). </dd></dl>
+
+</div>
+</div>
+<a id="a896b4e492ef596d9174aeda4b59c46cd" name="a896b4e492ef596d9174aeda4b59c46cd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a896b4e492ef596d9174aeda4b59c46cd">&#9670;&#160;</a></span>operator[]() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &amp; gridfire::reaction::ReactionSet::operator[] </td>
+          <td>(</td>
+          <td class="paramtype">const std::string_view &amp;&#160;</td>
+          <td class="paramname"><em>id</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Accesses a reaction by its ID. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">id</td><td>The ID of the reaction to access. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A const reference to the <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a>. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::out_of_range</td><td>if no reaction with the given ID exists. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a4057f74ae647b691f4f61f150553c52b" name="a4057f74ae647b691f4f61f150553c52b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4057f74ae647b691f4f61f150553c52b">&#9670;&#160;</a></span>operator[]() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &amp; gridfire::reaction::ReactionSet::operator[] </td>
+          <td>(</td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>index</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Accesses a reaction by its index. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">index</td><td>The index of the reaction to access. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A const reference to the <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a>. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::out_of_range</td><td>if the index is out of bounds. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a1177193b1e46b4e5be630028883ab8dd" name="a1177193b1e46b4e5be630028883ab8dd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1177193b1e46b4e5be630028883ab8dd">&#9670;&#160;</a></span>remove_reaction()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::reaction::ReactionSet::remove_reaction </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Removes a reaction from the set. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reaction</td><td>The <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> to remove. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="af14cf34d7367cb6a6be5191724c2d4cf" name="af14cf34d7367cb6a6be5191724c2d4cf"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af14cf34d7367cb6a6be5191724c2d4cf">&#9670;&#160;</a></span>size()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::reaction::ReactionSet::size </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Gets the number of reactions in the set. </p>
+<dl class="section return"><dt>Returns</dt><dd>The size of the set. </dd></dl>
+
+</div>
+</div>
+<h2 class="groupheader">Friends And Related Symbol Documentation</h2>
+<a id="a5a5e6ed364794f872c2c819536e24c20" name="a5a5e6ed364794f872c2c819536e24c20"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5a5e6ed364794f872c2c819536e24c20">&#9670;&#160;</a></span>operator&lt;&lt;</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::ostream &amp; operator&lt;&lt; </td>
+          <td>(</td>
+          <td class="paramtype">std::ostream &amp;&#160;</td>
+          <td class="paramname"><em>os</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>rs</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">friend</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="af92e3003b2a3606b48ab857cdedc3111" name="af92e3003b2a3606b48ab857cdedc3111"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af92e3003b2a3606b48ab857cdedc3111">&#9670;&#160;</a></span>m_id</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::reaction::ReactionSet::m_id</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aff5ae284012009164d4b3033577709eb" name="aff5ae284012009164d4b3033577709eb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aff5ae284012009164d4b3033577709eb">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::reaction::ReactionSet::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a4200939ccf088dd83c3d264df171d568" name="a4200939ccf088dd83c3d264df171d568"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4200939ccf088dd83c3d264df171d568">&#9670;&#160;</a></span>m_reactionHashes</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_set&lt;size_t&gt; gridfire::reaction::ReactionSet::m_reactionHashes</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a62965c04447909462bb4f2112661ef44" name="a62965c04447909462bb4f2112661ef44"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a62965c04447909462bb4f2112661ef44">&#9670;&#160;</a></span>m_reactionNameMap</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unordered_map&lt;std::string, size_t&gt; gridfire::reaction::ReactionSet::m_reactionNameMap</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Maps reaction IDs to <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> objects for quick lookup. </p>
+
+</div>
+</div>
+<a id="abd6feda1b3f65a6177904755581f6efe" name="abd6feda1b3f65a6177904755581f6efe"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abd6feda1b3f65a6177904755581f6efe">&#9670;&#160;</a></span>m_reactions</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;std::unique_ptr&lt;<a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a>&gt; &gt; gridfire::reaction::ReactionSet::m_reactions</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/reaction/<a class="el" href="reaction_8h.html">reaction.h</a></li>
+<li>src/lib/reaction/<a class="el" href="reaction_8cpp.html">reaction.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1reaction.html">reaction</a></li><li class="navelem"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1reaction_1_1ReactionSet.js b/docs/html/classgridfire_1_1reaction_1_1ReactionSet.js
new file mode 100644
index 00000000..c0797254
--- /dev/null
+++ b/docs/html/classgridfire_1_1reaction_1_1ReactionSet.js
@@ -0,0 +1,37 @@
+var classgridfire_1_1reaction_1_1ReactionSet =
+[
+    [ "ReactionSet", "classgridfire_1_1reaction_1_1ReactionSet.html#a9a63306b92e23e3651c955ab614084de", null ],
+    [ "ReactionSet", "classgridfire_1_1reaction_1_1ReactionSet.html#a789dee5d93810b85062e59508fe0adea", null ],
+    [ "ReactionSet", "classgridfire_1_1reaction_1_1ReactionSet.html#ab9edff40316b42ce41b2f895962c1041", null ],
+    [ "ReactionSet", "classgridfire_1_1reaction_1_1ReactionSet.html#acfe2341ae1f016ad82098b6f5a1efc45", null ],
+    [ "add_reaction", "classgridfire_1_1reaction_1_1ReactionSet.html#ad9dbc77e93467c95ebda908b53e9a9d1", null ],
+    [ "add_reaction", "classgridfire_1_1reaction_1_1ReactionSet.html#ad7e95562ea0860bf492b447341f41fb5", null ],
+    [ "begin", "classgridfire_1_1reaction_1_1ReactionSet.html#a228f2a00f46a6ee01be887490a722613", null ],
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+    [ "clear", "classgridfire_1_1reaction_1_1ReactionSet.html#aa8e0d65aafc6e0320690b4906e1bf300", null ],
+    [ "contains", "classgridfire_1_1reaction_1_1ReactionSet.html#a2f6b165c86634a68f35032c2267255f8", null ],
+    [ "contains", "classgridfire_1_1reaction_1_1ReactionSet.html#ae5f8078e77a700a8356487fbd69ba387", null ],
+    [ "contains_product", "classgridfire_1_1reaction_1_1ReactionSet.html#a4bdf50219d686a6cbc0b3cc5365dc18e", null ],
+    [ "contains_reactant", "classgridfire_1_1reaction_1_1ReactionSet.html#a256998eddf292f744d51cdc3e178d4c2", null ],
+    [ "contains_species", "classgridfire_1_1reaction_1_1ReactionSet.html#a5b872a8519740a6d06cfaed03784826a", null ],
+    [ "empty", "classgridfire_1_1reaction_1_1ReactionSet.html#a7cfce57192993e71c8437a64030caa2d", null ],
+    [ "end", "classgridfire_1_1reaction_1_1ReactionSet.html#abae9fbc4b4306479a6cd3173ac628987", null ],
+    [ "end", "classgridfire_1_1reaction_1_1ReactionSet.html#a436f9c4b8f8a4e115b19728d57d8e105", null ],
+    [ "extend", "classgridfire_1_1reaction_1_1ReactionSet.html#a6a4836776f5dd00158d2336e5bcc3222", null ],
+    [ "get", "classgridfire_1_1reaction_1_1ReactionSet.html#a85314ee0dde7e12915f63237086b5eb6", null ],
+    [ "getReactionSetSpecies", "classgridfire_1_1reaction_1_1ReactionSet.html#a133ad8cca6a75d31ef8efe67801aef1b", null ],
+    [ "hash", "classgridfire_1_1reaction_1_1ReactionSet.html#ad28907fc08de978461d68cc5b77a3a99", null ],
+    [ "operator!=", "classgridfire_1_1reaction_1_1ReactionSet.html#a529189f464aebc6b5ac5c717f70e14b8", null ],
+    [ "operator=", "classgridfire_1_1reaction_1_1ReactionSet.html#aac890bf7fdf689890d765ff67489520a", null ],
+    [ "operator==", "classgridfire_1_1reaction_1_1ReactionSet.html#a4e572e823a80b905e7d002b612123135", null ],
+    [ "operator[]", "classgridfire_1_1reaction_1_1ReactionSet.html#a896b4e492ef596d9174aeda4b59c46cd", null ],
+    [ "operator[]", "classgridfire_1_1reaction_1_1ReactionSet.html#a4057f74ae647b691f4f61f150553c52b", null ],
+    [ "remove_reaction", "classgridfire_1_1reaction_1_1ReactionSet.html#a1177193b1e46b4e5be630028883ab8dd", null ],
+    [ "size", "classgridfire_1_1reaction_1_1ReactionSet.html#af14cf34d7367cb6a6be5191724c2d4cf", null ],
+    [ "operator<<", "classgridfire_1_1reaction_1_1ReactionSet.html#a5a5e6ed364794f872c2c819536e24c20", null ],
+    [ "m_id", "classgridfire_1_1reaction_1_1ReactionSet.html#af92e3003b2a3606b48ab857cdedc3111", null ],
+    [ "m_logger", "classgridfire_1_1reaction_1_1ReactionSet.html#aff5ae284012009164d4b3033577709eb", null ],
+    [ "m_reactionHashes", "classgridfire_1_1reaction_1_1ReactionSet.html#a4200939ccf088dd83c3d264df171d568", null ],
+    [ "m_reactionNameMap", "classgridfire_1_1reaction_1_1ReactionSet.html#a62965c04447909462bb4f2112661ef44", null ],
+    [ "m_reactions", "classgridfire_1_1reaction_1_1ReactionSet.html#abd6feda1b3f65a6177904755581f6efe", null ]
+];
\ No newline at end of file
diff --git a/docs/html/classgridfire_1_1reaction_1_1ReactionSet__coll__graph.map b/docs/html/classgridfire_1_1reaction_1_1ReactionSet__coll__graph.map
new file mode 100644
index 00000000..c828c646
--- /dev/null
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <div class="headertitle"><div class="title">gridfire::reaction::WeakReaclibReaction Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html">gridfire::reaction::WeakReaclibReaction</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a445777acbbee2032d83a256181a90e3c">all_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ae66b446c98add7e00a1d960f4e7c60dd">calculate_energy_generation_rate</a>(const double T9, const double rho, const double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a4282f85c34d6db1994c07e7a40f66d80">calculate_energy_generation_rate</a>(const CppAD::AD&lt; double &gt; &amp;T9, const CppAD::AD&lt; double &gt; &amp;rho, const CppAD::AD&lt; double &gt; &amp;Ye, const CppAD::AD&lt; double &gt; &amp;mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ada6ec1ae05b9a92b58e6a4ecdf5a1656">calculate_log_rate_partial_deriv_wrt_T9</a>(double T9, double rho, double Ye, double mue, const fourdst::composition::Composition &amp;comp) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#acd16b1daf13456b3523362a37b1bf9b0">calculate_rate</a>(double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#afec5ccf7a8fb1ba56c8cc852ce858c5e">calculate_rate</a>(CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#aeb177f9cf69e4f97c4518a27e6480523">calculate_rate</a>(const T T9) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#abe189c43e4d509d9d05dd205861ceddc">chapter</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html#ac3fc463a1cea6854ea989732e1e5f65a">clone</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html">gridfire::reaction::WeakReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a171b690e1abaf23f11a94c39e9f8c944">contains</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a4e4811436d09afaa4a14c51d9af71f88">contains_product</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a65a12e5f6180873866cfaaf130fd1156">contains_reactant</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#abe3ab72b2577cbe0f87436b063ce812c">countProductOccurrences</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a79928f9c52822202b3156bd145e35ad8">countReactantOccurrences</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a0b30c49925823c87980b4fca17c8282e">excess_energy</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#aefd0436ae72880358214d5b79c9c79eb">getRateCoefficients</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a661dd461e51c37133f7f9931389fd3cc">hash</a>(uint64_t seed) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a06312f834439ccf93012dea53cab47ce">id</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a181b2c75af1f2701c43594c5bb2bac2d">is_reverse</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#adbcb383bac0f47c66251ee1b7c5f539d">m_chapter</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a8ca86e0f8f95ffb6d87ca295e44f14c5">m_id</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#abab0ed78925789856ebb119d60c6a53d">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a51f658789f34f96e0e6bd42cef5cbfe4">m_peName</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a4c6ba4d6355f33cbe2e72614fa72363f">m_products</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ad89d4b413c507e850dba624e1b36b886">m_productsVec</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a498c202a259cbc315997ec68a2cb8a59">m_qValue</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a8ea3de0412395b7b617c4b71cbc2ab68">m_rateCoefficients</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a9ecfb28ccb32904a28217fe2eb0c659d">m_reactants</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#aae29f755030c51fc9c8f7db52a022f84">m_reactantsVec</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#af52b42d940f6a09dba5d28898d2b0b1f">m_reverse</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a7e79437a68947e176b8dd7dcbe27baab">m_sourceLabel</a></td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a9205126955ad38f56e8aca3112bc150a">num_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a8b6008e0f629329bfc62256f4f081b77">operator!=</a>(const ReaclibReaction &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae7c930525db447e39b4de18fbc1251a8">operator==</a>(const ReaclibReaction &amp;other) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#af775f97f4d5e144e33bc6e0ba58a5851">peName</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a67c8fa4d5929c7a8cbca9b3d9dd2b704">product_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a5f563b99bb550d5bafa2a989502de019">products</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae47931948f12816eb890c0db4fff4d68">qValue</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#adfed51cf788a7ed4770cbd5945ddab2f">rateCoefficients</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html#a264112a230817a6080c770686e5bcc01">ReaclibReaction</a>(std::string_view id, std::string_view peName, int chapter, const std::vector&lt; fourdst::atomic::Species &gt; &amp;reactants, const std::vector&lt; fourdst::atomic::Species &gt; &amp;products, double qValue, std::string_view label, const RateCoefficientSet &amp;sets, bool reverse=false)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html">gridfire::reaction::WeakReaclibReaction</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ad85ca288289b25d482cbb8e3ff270028">reactant_species</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ad095aba46860fec0e68386bf04f7f142">reactants</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a96d4ab87de02e9b0be3c248e2e955b4b">sourceLabel</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a57b2695d152360a6ba08776cc760e3a1">stoichiometry</a>(const fourdst::atomic::Species &amp;species) const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a0f629cbfe95dc5643b5e3724be0db2f9">stoichiometry</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html#af191b4afdf41a9916ecf9647e88d8037">type</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html">gridfire::reaction::WeakReaclibReaction</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae2b9b41a598c5f0dcd050b32985ea44e">~ReaclibReaction</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab1860df84843be70f97469761e11ab6a">~Reaction</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1reaction_1_1WeakReaclibReaction-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::reaction::WeakReaclibReaction Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;reaction.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::reaction::WeakReaclibReaction:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1reaction_1_1WeakReaclibReaction__inherit__graph.svg" width="182" height="227"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::reaction::WeakReaclibReaction:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1reaction_1_1WeakReaclibReaction__coll__graph.svg" width="100%" height="485"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:af191b4afdf41a9916ecf9647e88d8037" id="r_af191b4afdf41a9916ecf9647e88d8037"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html#af191b4afdf41a9916ecf9647e88d8037">type</a> () const override</td></tr>
+<tr class="memdesc:af191b4afdf41a9916ecf9647e88d8037"><td class="mdescLeft">&#160;</td><td class="mdescRight">Category of this reaction (e.g., REACLIB, WEAK, LOGICAL_REACLIB).  <br /></td></tr>
+<tr class="separator:af191b4afdf41a9916ecf9647e88d8037"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac3fc463a1cea6854ea989732e1e5f65a" id="r_ac3fc463a1cea6854ea989732e1e5f65a"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html#ac3fc463a1cea6854ea989732e1e5f65a">clone</a> () const override</td></tr>
+<tr class="memdesc:ac3fc463a1cea6854ea989732e1e5f65a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Polymorphic deep copy.  <br /></td></tr>
+<tr class="separator:ac3fc463a1cea6854ea989732e1e5f65a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a264112a230817a6080c770686e5bcc01" id="r_a264112a230817a6080c770686e5bcc01"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html#a264112a230817a6080c770686e5bcc01">ReaclibReaction</a> (std::string_view <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a06312f834439ccf93012dea53cab47ce">id</a>, std::string_view <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#af775f97f4d5e144e33bc6e0ba58a5851">peName</a>, int <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#abe189c43e4d509d9d05dd205861ceddc">chapter</a>, const std::vector&lt; fourdst::atomic::Species &gt; &amp;<a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ad095aba46860fec0e68386bf04f7f142">reactants</a>, const std::vector&lt; fourdst::atomic::Species &gt; &amp;<a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a5f563b99bb550d5bafa2a989502de019">products</a>, double <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae47931948f12816eb890c0db4fff4d68">qValue</a>, std::string_view label, const <a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">RateCoefficientSet</a> &amp;sets, bool reverse=false)</td></tr>
+<tr class="memdesc:a264112a230817a6080c770686e5bcc01"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> object.  <br /></td></tr>
+<tr class="separator:a264112a230817a6080c770686e5bcc01"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1reaction_1_1ReaclibReaction"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1reaction_1_1ReaclibReaction')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td></tr>
+<tr class="memitem:ae2b9b41a598c5f0dcd050b32985ea44e inherit pub_methods_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_ae2b9b41a598c5f0dcd050b32985ea44e"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae2b9b41a598c5f0dcd050b32985ea44e">~ReaclibReaction</a> () override=default</td></tr>
+<tr class="separator:ae2b9b41a598c5f0dcd050b32985ea44e inherit pub_methods_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a264112a230817a6080c770686e5bcc01 inherit pub_methods_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_a264112a230817a6080c770686e5bcc01"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a264112a230817a6080c770686e5bcc01">ReaclibReaction</a> (std::string_view <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a06312f834439ccf93012dea53cab47ce">id</a>, std::string_view <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#af775f97f4d5e144e33bc6e0ba58a5851">peName</a>, int <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#abe189c43e4d509d9d05dd205861ceddc">chapter</a>, const std::vector&lt; fourdst::atomic::Species &gt; &amp;<a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ad095aba46860fec0e68386bf04f7f142">reactants</a>, const std::vector&lt; fourdst::atomic::Species &gt; &amp;<a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a5f563b99bb550d5bafa2a989502de019">products</a>, double <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae47931948f12816eb890c0db4fff4d68">qValue</a>, std::string_view label, const <a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">RateCoefficientSet</a> &amp;sets, bool reverse=false)</td></tr>
+<tr class="memdesc:a264112a230817a6080c770686e5bcc01 inherit pub_methods_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructs a <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> object.  <br /></td></tr>
+<tr class="separator:a264112a230817a6080c770686e5bcc01 inherit pub_methods_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acd16b1daf13456b3523362a37b1bf9b0 inherit pub_methods_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_acd16b1daf13456b3523362a37b1bf9b0"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#acd16b1daf13456b3523362a37b1bf9b0">calculate_rate</a> (double T9, double rho, double Ye, double mue, const std::vector&lt; double &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td></tr>
+<tr class="memdesc:acd16b1daf13456b3523362a37b1bf9b0 inherit pub_methods_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the reaction rate for a given temperature.  <br /></td></tr>
+<tr class="separator:acd16b1daf13456b3523362a37b1bf9b0 inherit pub_methods_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afec5ccf7a8fb1ba56c8cc852ce858c5e inherit pub_methods_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_afec5ccf7a8fb1ba56c8cc852ce858c5e"><td class="memItemLeft" align="right" valign="top">CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#afec5ccf7a8fb1ba56c8cc852ce858c5e">calculate_rate</a> (CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho, CppAD::AD&lt; double &gt; Ye, CppAD::AD&lt; double &gt; mue, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, const std::unordered_map&lt; size_t, fourdst::atomic::Species &gt; &amp;index_to_species_map) const override</td></tr>
+<tr class="memdesc:afec5ccf7a8fb1ba56c8cc852ce858c5e inherit pub_methods_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates the reaction rate for a given temperature using CppAD types.  <br /></td></tr>
+<tr class="separator:afec5ccf7a8fb1ba56c8cc852ce858c5e inherit pub_methods_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ada6ec1ae05b9a92b58e6a4ecdf5a1656 inherit pub_methods_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_ada6ec1ae05b9a92b58e6a4ecdf5a1656"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ada6ec1ae05b9a92b58e6a4ecdf5a1656">calculate_log_rate_partial_deriv_wrt_T9</a> (double T9, double rho, double Ye, double mue, const fourdst::composition::Composition &amp;comp) const override</td></tr>
+<tr class="memdesc:ada6ec1ae05b9a92b58e6a4ecdf5a1656 inherit pub_methods_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logarithmic partial derivative of the rate with respect to temperature.  <br /></td></tr>
+<tr class="separator:ada6ec1ae05b9a92b58e6a4ecdf5a1656 inherit pub_methods_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af775f97f4d5e144e33bc6e0ba58a5851 inherit pub_methods_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_af775f97f4d5e144e33bc6e0ba58a5851"><td class="memItemLeft" align="right" valign="top">virtual std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#af775f97f4d5e144e33bc6e0ba58a5851">peName</a> () const</td></tr>
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+<tr class="inherit_header pub_methods_classgridfire_1_1reaction_1_1Reaction"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1reaction_1_1Reaction')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">gridfire::reaction::Reaction</a></td></tr>
+<tr class="memitem:ab1860df84843be70f97469761e11ab6a inherit pub_methods_classgridfire_1_1reaction_1_1Reaction" id="r_ab1860df84843be70f97469761e11ab6a"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab1860df84843be70f97469761e11ab6a">~Reaction</a> ()=default</td></tr>
+<tr class="memdesc:ab1860df84843be70f97469761e11ab6a inherit pub_methods_classgridfire_1_1reaction_1_1Reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for correct polymorphic cleanup.  <br /></td></tr>
+<tr class="separator:ab1860df84843be70f97469761e11ab6a inherit pub_methods_classgridfire_1_1reaction_1_1Reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:ae66b446c98add7e00a1d960f4e7c60dd inherit pub_methods_classgridfire_1_1reaction_1_1Reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convenience: energy generation rate from this reaction (double version).  <br /></td></tr>
+<tr class="separator:ae66b446c98add7e00a1d960f4e7c60dd inherit pub_methods_classgridfire_1_1reaction_1_1Reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a4282f85c34d6db1994c07e7a40f66d80 inherit pub_methods_classgridfire_1_1reaction_1_1Reaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convenience: AD-enabled energy generation rate (AD version).  <br /></td></tr>
+<tr class="separator:a4282f85c34d6db1994c07e7a40f66d80 inherit pub_methods_classgridfire_1_1reaction_1_1Reaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">gridfire::reaction::ReaclibReaction</a></td></tr>
+<tr class="memitem:abab0ed78925789856ebb119d60c6a53d inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_abab0ed78925789856ebb119d60c6a53d"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#abab0ed78925789856ebb119d60c6a53d">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="separator:abab0ed78925789856ebb119d60c6a53d inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a8ca86e0f8f95ffb6d87ca295e44f14c5 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a51f658789f34f96e0e6bd42cef5cbfe4 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Name of the reaction in (projectile, ejectile) notation (e.g. "p(p,g)d").  <br /></td></tr>
+<tr class="separator:a51f658789f34f96e0e6bd42cef5cbfe4 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adbcb383bac0f47c66251ee1b7c5f539d inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_adbcb383bac0f47c66251ee1b7c5f539d"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#adbcb383bac0f47c66251ee1b7c5f539d">m_chapter</a></td></tr>
+<tr class="memdesc:adbcb383bac0f47c66251ee1b7c5f539d inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Chapter number from the REACLIB database, defining the reaction structure.  <br /></td></tr>
+<tr class="separator:adbcb383bac0f47c66251ee1b7c5f539d inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a498c202a259cbc315997ec68a2cb8a59 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_a498c202a259cbc315997ec68a2cb8a59"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a498c202a259cbc315997ec68a2cb8a59">m_qValue</a> = 0.0</td></tr>
+<tr class="memdesc:a498c202a259cbc315997ec68a2cb8a59 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Q-value of the reaction in MeV.  <br /></td></tr>
+<tr class="separator:a498c202a259cbc315997ec68a2cb8a59 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9ecfb28ccb32904a28217fe2eb0c659d inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_a9ecfb28ccb32904a28217fe2eb0c659d"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; fourdst::atomic::Species, size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a9ecfb28ccb32904a28217fe2eb0c659d">m_reactants</a></td></tr>
+<tr class="memdesc:a9ecfb28ccb32904a28217fe2eb0c659d inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reactants of the reaction.  <br /></td></tr>
+<tr class="separator:a9ecfb28ccb32904a28217fe2eb0c659d inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4c6ba4d6355f33cbe2e72614fa72363f inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_a4c6ba4d6355f33cbe2e72614fa72363f"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; fourdst::atomic::Species, size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a4c6ba4d6355f33cbe2e72614fa72363f">m_products</a></td></tr>
+<tr class="memdesc:a4c6ba4d6355f33cbe2e72614fa72363f inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Products of the reaction.  <br /></td></tr>
+<tr class="separator:a4c6ba4d6355f33cbe2e72614fa72363f inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aae29f755030c51fc9c8f7db52a022f84 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_aae29f755030c51fc9c8f7db52a022f84"><td class="memItemLeft" align="right" valign="top">std::optional&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#aae29f755030c51fc9c8f7db52a022f84">m_reactantsVec</a></td></tr>
+<tr class="separator:aae29f755030c51fc9c8f7db52a022f84 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad89d4b413c507e850dba624e1b36b886 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_ad89d4b413c507e850dba624e1b36b886"><td class="memItemLeft" align="right" valign="top">std::optional&lt; std::vector&lt; fourdst::atomic::Species &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ad89d4b413c507e850dba624e1b36b886">m_productsVec</a></td></tr>
+<tr class="separator:ad89d4b413c507e850dba624e1b36b886 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7e79437a68947e176b8dd7dcbe27baab inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_a7e79437a68947e176b8dd7dcbe27baab"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a7e79437a68947e176b8dd7dcbe27baab">m_sourceLabel</a></td></tr>
+<tr class="memdesc:a7e79437a68947e176b8dd7dcbe27baab inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Source label for the rate data (e.g., "wc12w", "st08").  <br /></td></tr>
+<tr class="separator:a7e79437a68947e176b8dd7dcbe27baab inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8ea3de0412395b7b617c4b71cbc2ab68 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_a8ea3de0412395b7b617c4b71cbc2ab68"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">RateCoefficientSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a8ea3de0412395b7b617c4b71cbc2ab68">m_rateCoefficients</a></td></tr>
+<tr class="memdesc:a8ea3de0412395b7b617c4b71cbc2ab68 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">The seven rate coefficients.  <br /></td></tr>
+<tr class="separator:a8ea3de0412395b7b617c4b71cbc2ab68 inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af52b42d940f6a09dba5d28898d2b0b1f inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction" id="r_af52b42d940f6a09dba5d28898d2b0b1f"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#af52b42d940f6a09dba5d28898d2b0b1f">m_reverse</a> = false</td></tr>
+<tr class="memdesc:af52b42d940f6a09dba5d28898d2b0b1f inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="mdescLeft">&#160;</td><td class="mdescRight">Flag indicating if this is a reverse reaction rate.  <br /></td></tr>
+<tr class="separator:af52b42d940f6a09dba5d28898d2b0b1f inherit pro_attribs_classgridfire_1_1reaction_1_1ReaclibReaction"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ac3fc463a1cea6854ea989732e1e5f65a" name="ac3fc463a1cea6854ea989732e1e5f65a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac3fc463a1cea6854ea989732e1e5f65a">&#9670;&#160;</a></span>clone()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &gt; gridfire::reaction::WeakReaclibReaction::clone </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Polymorphic deep copy. </p>
+<dl class="section return"><dt>Returns</dt><dd>A std::unique_ptr owning a new <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> equal to this one. </dd></dl>
+
+<p>Reimplemented from <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a54fde02e7010e806136f976ab64b1740">gridfire::reaction::ReaclibReaction</a>.</p>
+
+</div>
+</div>
+<a id="a264112a230817a6080c770686e5bcc01" name="a264112a230817a6080c770686e5bcc01"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a264112a230817a6080c770686e5bcc01">&#9670;&#160;</a></span>ReaclibReaction()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::reaction::ReaclibReaction::ReaclibReaction </td>
+          <td>(</td>
+          <td class="paramtype">std::string_view&#160;</td>
+          <td class="paramname"><em>id</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">std::string_view&#160;</td>
+          <td class="paramname"><em>peName</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>chapter</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>reactants</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>products</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>qValue</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">std::string_view&#160;</td>
+          <td class="paramname"><em>label</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">RateCoefficientSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>sets</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>reverse</em> = <code>false</code>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Constructs a <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" title="Represents a single nuclear reaction from a specific data source.">Reaction</a> object. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">id</td><td>A unique identifier for the reaction. </td></tr>
+    <tr><td class="paramname">peName</td><td>The name in (projectile, ejectile) notation (e.g., "p(p,g)d"). </td></tr>
+    <tr><td class="paramname">chapter</td><td>The REACLIB chapter number, defining reaction structure. </td></tr>
+    <tr><td class="paramname">reactants</td><td>A vector of reactant species. </td></tr>
+    <tr><td class="paramname">products</td><td>A vector of product species. </td></tr>
+    <tr><td class="paramname">qValue</td><td>The Q-value of the reaction in MeV. </td></tr>
+    <tr><td class="paramname">label</td><td>The sources label for the rate data (e.g., "wc12", "st08"). </td></tr>
+    <tr><td class="paramname">sets</td><td>The set of rate coefficients. </td></tr>
+    <tr><td class="paramname">reverse</td><td>True if this is a reverse reaction rate. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="af191b4afdf41a9916ecf9647e88d8037" name="af191b4afdf41a9916ecf9647e88d8037"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af191b4afdf41a9916ecf9647e88d8037">&#9670;&#160;</a></span>type()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a> gridfire::reaction::WeakReaclibReaction::type </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
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+<p>Category of this reaction (e.g., REACLIB, WEAK, LOGICAL_REACLIB). </p>
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+  <div class="headertitle"><div class="title">gridfire::screening::BareScreeningModel Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html">gridfire::screening::BareScreeningModel</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html">gridfire::screening::BareScreeningModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#a48a3392d735c61b15b4855c823acfada">calculateFactors_impl</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; T &gt; &amp;Y, const T &amp;T9, const T &amp;rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html">gridfire::screening::BareScreeningModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#ad252ce1de82401bab24747aabf0c8a3a">calculateScreeningFactors</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html">gridfire::screening::BareScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#a0ac3685a90c1e65a84e03cfb2fed29e5">calculateScreeningFactors</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, ADDouble T9, ADDouble rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html">gridfire::screening::BareScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">gridfire::screening::ScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-types">Private Types</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="classgridfire_1_1screening_1_1BareScreeningModel-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::screening::BareScreeningModel Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>A screening model that applies no screening effect.  
+ <a href="classgridfire_1_1screening_1_1BareScreeningModel.html#details">More...</a></p>
+
+<p><code>#include &lt;screening_bare.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::screening::BareScreeningModel:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1screening_1_1BareScreeningModel__inherit__graph.svg" width="175" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::screening::BareScreeningModel:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1screening_1_1BareScreeningModel__coll__graph.svg" width="175" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:ad252ce1de82401bab24747aabf0c8a3a" id="r_ad252ce1de82401bab24747aabf0c8a3a"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#ad252ce1de82401bab24747aabf0c8a3a">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td></tr>
+<tr class="memdesc:ad252ce1de82401bab24747aabf0c8a3a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors, which are always 1.0.  <br /></td></tr>
+<tr class="separator:ad252ce1de82401bab24747aabf0c8a3a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0ac3685a90c1e65a84e03cfb2fed29e5" id="r_a0ac3685a90c1e65a84e03cfb2fed29e5"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#a0ac3685a90c1e65a84e03cfb2fed29e5">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, <a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> T9, <a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> rho) const override</td></tr>
+<tr class="memdesc:a0ac3685a90c1e65a84e03cfb2fed29e5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors for AD types, which are always 1.0.  <br /></td></tr>
+<tr class="separator:a0ac3685a90c1e65a84e03cfb2fed29e5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1screening_1_1ScreeningModel"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1screening_1_1ScreeningModel')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">gridfire::screening::ScreeningModel</a></td></tr>
+<tr class="memitem:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1ScreeningModel" id="r_adef175acdbd911527f56a1f1592579a7"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a> ()=default</td></tr>
+<tr class="memdesc:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1ScreeningModel"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1ScreeningModel"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-types" name="pri-types"></a>
+Private Types</h2></td></tr>
+<tr class="memitem:a51119d705267e0b415aae8b4881d8c96" id="r_a51119d705267e0b415aae8b4881d8c96"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> = CppAD::AD&lt; double &gt;</td></tr>
+<tr class="memdesc:a51119d705267e0b415aae8b4881d8c96"><td class="mdescLeft">&#160;</td><td class="mdescRight">Alias for CppAD Automatic Differentiation type for double precision.  <br /></td></tr>
+<tr class="separator:a51119d705267e0b415aae8b4881d8c96"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:a48a3392d735c61b15b4855c823acfada" id="r_a48a3392d735c61b15b4855c823acfada"><td class="memTemplParams" colspan="2">template&lt;typename T &gt; </td></tr>
+<tr class="memitem:a48a3392d735c61b15b4855c823acfada"><td class="memTemplItemLeft" align="right" valign="top">std::vector&lt; T &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#a48a3392d735c61b15b4855c823acfada">calculateFactors_impl</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; T &gt; &amp;Y, const T &amp;T9, const T &amp;rho) const</td></tr>
+<tr class="memdesc:a48a3392d735c61b15b4855c823acfada"><td class="mdescLeft">&#160;</td><td class="mdescRight">Template implementation for calculating screening factors.  <br /></td></tr>
+<tr class="separator:a48a3392d735c61b15b4855c823acfada"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_types_classgridfire_1_1screening_1_1ScreeningModel"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classgridfire_1_1screening_1_1ScreeningModel')"><img src="closed.png" alt="-"/>&#160;Public Types inherited from <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">gridfire::screening::ScreeningModel</a></td></tr>
+<tr class="memitem:a107ff2897f040d6f27f69d56a0bdd28d inherit pub_types_classgridfire_1_1screening_1_1ScreeningModel" id="r_a107ff2897f040d6f27f69d56a0bdd28d"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> = CppAD::AD&lt; double &gt;</td></tr>
+<tr class="memdesc:a107ff2897f040d6f27f69d56a0bdd28d inherit pub_types_classgridfire_1_1screening_1_1ScreeningModel"><td class="mdescLeft">&#160;</td><td class="mdescRight">Alias for CppAD Automatic Differentiation type for double precision.  <br /></td></tr>
+<tr class="separator:a107ff2897f040d6f27f69d56a0bdd28d inherit pub_types_classgridfire_1_1screening_1_1ScreeningModel"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>A screening model that applies no screening effect. </p>
+<p>This class implements the <code><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html" title="An abstract base class for plasma screening models.">ScreeningModel</a></code> interface but returns a screening factor of 1.0 for all reactions, regardless of the plasma conditions. It represents the case of bare, unscreened nuclei and serves as a baseline or can be used when screening effects are negligible or intentionally ignored. </p>
+</div><h2 class="groupheader">Member Typedef Documentation</h2>
+<a id="a51119d705267e0b415aae8b4881d8c96" name="a51119d705267e0b415aae8b4881d8c96"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a51119d705267e0b415aae8b4881d8c96">&#9670;&#160;</a></span>ADDouble</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">using <a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#a51119d705267e0b415aae8b4881d8c96">gridfire::screening::BareScreeningModel::ADDouble</a> =  CppAD::AD&lt;double&gt;</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Alias for CppAD Automatic Differentiation type for double precision. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a48a3392d735c61b15b4855c823acfada" name="a48a3392d735c61b15b4855c823acfada"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a48a3392d735c61b15b4855c823acfada">&#9670;&#160;</a></span>calculateFactors_impl()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; T &gt; gridfire::screening::BareScreeningModel::calculateFactors_impl </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; T &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const T &amp;&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const T &amp;&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Template implementation for calculating screening factors. </p>
+<p>Template implementation for the bare screening model.</p>
+<p>This private helper function contains the core logic for both the <code>double</code> and <code>ADDouble</code> versions of <code>calculateScreeningFactors</code>. It is templated to handle both numeric types seamlessly.</p>
+<dl class="tparams"><dt>Template Parameters</dt><dd>
+  <table class="tparams">
+    <tr><td class="paramname">T</td><td>The numeric type, either <code>double</code> or <code>CppAD::AD&lt;double&gt;</code>. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of reactions for which to calculate factors. </td></tr>
+    <tr><td class="paramname">species</td><td>A vector of all atomic species (unused). </td></tr>
+    <tr><td class="paramname">Y</td><td>The current molar composition (unused). </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature (unused). </td></tr>
+    <tr><td class="paramname">rho</td><td>The density (unused). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of type <code>T</code> with all elements initialized to 1.0.</dd></dl>
+<p>This function provides the actual implementation for <code>calculateFactors_impl</code>. It creates a vector of the appropriate numeric type (<code>T</code>) and size, and initializes all its elements to 1.0, representing no screening.</p>
+<dl class="tparams"><dt>Template Parameters</dt><dd>
+  <table class="tparams">
+    <tr><td class="paramname">T</td><td>The numeric type, either <code>double</code> or <code>CppAD::AD&lt;double&gt;</code>. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of reactions, used to determine the size of the output vector. </td></tr>
+    <tr><td class="paramname">species</td><td>Unused parameter. </td></tr>
+    <tr><td class="paramname">Y</td><td>Unused parameter.<code> @param T9 Unused parameter. @param rho Unused parameter. @return A</code>std::vector&lt;T&gt;<code>of the same size as</code>reactions`, with all elements set to 1.0. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a0ac3685a90c1e65a84e03cfb2fed29e5" name="a0ac3685a90c1e65a84e03cfb2fed29e5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0ac3685a90c1e65a84e03cfb2fed29e5">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> &gt; gridfire::screening::BareScreeningModel::calculateScreeningFactors </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#a51119d705267e0b415aae8b4881d8c96">ADDouble</a>&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#a51119d705267e0b415aae8b4881d8c96">ADDouble</a>&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates screening factors for AD types, which are always 1.0. </p>
+<p>This implementation returns a vector of AD-typed screening factors where every element is 1.0. This is the automatic differentiation-compatible version.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
+    <tr><td class="paramname">species</td><td>A vector of all atomic species (unused). </td></tr>
+    <tr><td class="paramname">Y</td><td>The current composition, providing molar abundances (mol/g) for each species (unused). </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature as an AD type (unused). </td></tr>
+    <tr><td class="paramname">rho</td><td>The plasma density as an AD type (unused). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of ADDouble, with each element being 1.0, of the same size as the <code>reactions</code> set. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a1da8242c7591ab32453d1e0109999d6c">gridfire::screening::ScreeningModel</a>.</p>
+
+</div>
+</div>
+<a id="ad252ce1de82401bab24747aabf0c8a3a" name="ad252ce1de82401bab24747aabf0c8a3a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad252ce1de82401bab24747aabf0c8a3a">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
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+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
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+        <tr>
+          <td class="memname">std::vector&lt; double &gt; gridfire::screening::BareScreeningModel::calculateScreeningFactors </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates screening factors, which are always 1.0. </p>
+<p>This implementation returns a vector of screening factors where every element is 1.0, effectively applying no screening correction to the reaction rates.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
+    <tr><td class="paramname">species</td><td>A vector of all atomic species (unused). </td></tr>
+    <tr><td class="paramname">Y</td><td>A vector of the molar abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature (unused). </td></tr>
+    <tr><td class="paramname">rho</td><td>The plasma density (unused). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of doubles, with each element being 1.0, of the same size as the <code>reactions</code> set.</dd></dl>
+<p><b>Algorithm</b> The function simply creates and returns a <code>std::vector&lt;double&gt;</code> of the same size as the input <code>reactions</code> set, with all elements initialized to 1.0.</p>
+<p><b>Usage</b> </p><div class="fragment"><div class="line"><a class="code hl_class" href="classgridfire_1_1screening_1_1BareScreeningModel.html">BareScreeningModel</a> bare_model;</div>
+<div class="line"><span class="comment">// ... (initialize reactions, species, Y, T9, rho)</span></div>
+<div class="line">std::vector&lt;double&gt; factors = bare_model.<a class="code hl_function" href="classgridfire_1_1screening_1_1BareScreeningModel.html#ad252ce1de82401bab24747aabf0c8a3a">calculateScreeningFactors</a>(</div>
+<div class="line">    reactions, species, Y, T9, rho</div>
+<div class="line">);</div>
+<div class="line"><span class="comment">// &#39;factors&#39; will contain [1.0, 1.0, ...]</span></div>
+<div class="ttc" id="aclassgridfire_1_1screening_1_1BareScreeningModel_html"><div class="ttname"><a href="classgridfire_1_1screening_1_1BareScreeningModel.html">gridfire::screening::BareScreeningModel</a></div><div class="ttdoc">A screening model that applies no screening effect.</div><div class="ttdef"><b>Definition</b> screening_bare.h:21</div></div>
+<div class="ttc" id="aclassgridfire_1_1screening_1_1BareScreeningModel_html_ad252ce1de82401bab24747aabf0c8a3a"><div class="ttname"><a href="classgridfire_1_1screening_1_1BareScreeningModel.html#ad252ce1de82401bab24747aabf0c8a3a">gridfire::screening::BareScreeningModel::calculateScreeningFactors</a></div><div class="ttdeci">std::vector&lt; double &gt; calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</div><div class="ttdoc">Calculates screening factors, which are always 1.0.</div><div class="ttdef"><b>Definition</b> screening_bare.cpp:22</div></div>
+</div><!-- fragment --> 
+<p>Implements <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#ab08c4490f9da18254a7c6f29be1f62ce">gridfire::screening::ScreeningModel</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/screening/<a class="el" href="screening__bare_8h.html">screening_bare.h</a></li>
+<li>src/lib/screening/<a class="el" href="screening__bare_8cpp.html">screening_bare.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
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+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1screening.html">screening</a></li><li class="navelem"><a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html">BareScreeningModel</a></li>
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+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1screening_1_1IntermediateScreeningModel.html">gridfire::screening::IntermediateScreeningModel</a>, including all inherited members.</p>
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+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1IntermediateScreeningModel.html#a794b7781f07343383da3894208cfbfa9">calculateFactors_impl</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; T &gt; &amp;Y, T T9, T rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1IntermediateScreeningModel.html">gridfire::screening::IntermediateScreeningModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1IntermediateScreeningModel.html#a86a218ce82306ed582296cbeb3de0250">calculateScreeningFactors</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1IntermediateScreeningModel.html">gridfire::screening::IntermediateScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1IntermediateScreeningModel.html#a765e369256282f0f25e66e13c33dcbd9">calculateScreeningFactors</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; ADDouble &gt; &amp;Y, ADDouble T9, ADDouble rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1IntermediateScreeningModel.html">gridfire::screening::IntermediateScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">gridfire::screening::ScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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diff --git a/docs/html/classgridfire_1_1screening_1_1IntermediateScreeningModel.html b/docs/html/classgridfire_1_1screening_1_1IntermediateScreeningModel.html
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="classgridfire_1_1screening_1_1IntermediateScreeningModel-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::screening::IntermediateScreeningModel Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;screening_intermediate.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::screening::IntermediateScreeningModel:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1screening_1_1IntermediateScreeningModel__inherit__graph.svg" width="230" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::screening::IntermediateScreeningModel:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1screening_1_1IntermediateScreeningModel__coll__graph.svg" width="230" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a86a218ce82306ed582296cbeb3de0250" id="r_a86a218ce82306ed582296cbeb3de0250"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1IntermediateScreeningModel.html#a86a218ce82306ed582296cbeb3de0250">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a86a218ce82306ed582296cbeb3de0250"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors for a set of reactions.  <br /></td></tr>
+<tr class="separator:a86a218ce82306ed582296cbeb3de0250"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a765e369256282f0f25e66e13c33dcbd9" id="r_a765e369256282f0f25e66e13c33dcbd9"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1IntermediateScreeningModel.html#a765e369256282f0f25e66e13c33dcbd9">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt; &amp;Y, <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> T9, <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> rho) const override</td></tr>
+<tr class="memdesc:a765e369256282f0f25e66e13c33dcbd9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors using CppAD types for automatic differentiation.  <br /></td></tr>
+<tr class="separator:a765e369256282f0f25e66e13c33dcbd9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1screening_1_1ScreeningModel"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1screening_1_1ScreeningModel')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">gridfire::screening::ScreeningModel</a></td></tr>
+<tr class="memitem:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1ScreeningModel" id="r_adef175acdbd911527f56a1f1592579a7"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a> ()=default</td></tr>
+<tr class="memdesc:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1ScreeningModel"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1ScreeningModel"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:a794b7781f07343383da3894208cfbfa9" id="r_a794b7781f07343383da3894208cfbfa9"><td class="memTemplParams" colspan="2">template&lt;typename T &gt; </td></tr>
+<tr class="memitem:a794b7781f07343383da3894208cfbfa9"><td class="memTemplItemLeft" align="right" valign="top">std::vector&lt; T &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1IntermediateScreeningModel.html#a794b7781f07343383da3894208cfbfa9">calculateFactors_impl</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; T &gt; &amp;Y, T T9, T rho) const</td></tr>
+<tr class="separator:a794b7781f07343383da3894208cfbfa9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_types_classgridfire_1_1screening_1_1ScreeningModel"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classgridfire_1_1screening_1_1ScreeningModel')"><img src="closed.png" alt="-"/>&#160;Public Types inherited from <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">gridfire::screening::ScreeningModel</a></td></tr>
+<tr class="memitem:a107ff2897f040d6f27f69d56a0bdd28d inherit pub_types_classgridfire_1_1screening_1_1ScreeningModel" id="r_a107ff2897f040d6f27f69d56a0bdd28d"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> = CppAD::AD&lt; double &gt;</td></tr>
+<tr class="memdesc:a107ff2897f040d6f27f69d56a0bdd28d inherit pub_types_classgridfire_1_1screening_1_1ScreeningModel"><td class="mdescLeft">&#160;</td><td class="mdescRight">Alias for CppAD Automatic Differentiation type for double precision.  <br /></td></tr>
+<tr class="separator:a107ff2897f040d6f27f69d56a0bdd28d inherit pub_types_classgridfire_1_1screening_1_1ScreeningModel"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a794b7781f07343383da3894208cfbfa9" name="a794b7781f07343383da3894208cfbfa9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a794b7781f07343383da3894208cfbfa9">&#9670;&#160;</a></span>calculateFactors_impl()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; T &gt; gridfire::screening::IntermediateScreeningModel::calculateFactors_impl </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; T &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a765e369256282f0f25e66e13c33dcbd9" name="a765e369256282f0f25e66e13c33dcbd9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a765e369256282f0f25e66e13c33dcbd9">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt; gridfire::screening::IntermediateScreeningModel::calculateScreeningFactors </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a>&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a>&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates screening factors using CppAD types for automatic differentiation. </p>
+<p>This is a pure virtual function that provides an overload of <code>calculateScreeningFactors</code> for use with CppAD. It allows the derivatives of the screening factors with respect to abundances, temperature, and density to be computed automatically.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
+    <tr><td class="paramname">species</td><td>A vector of all atomic species involved in the network. </td></tr>
+    <tr><td class="paramname">Y</td><td>The current composition, providing molar abundances (mol/g) for each species. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K, as an AD type. </td></tr>
+    <tr><td class="paramname">rho</td><td>The plasma density in g/cm^3, as an AD type. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of screening factors (dimensionless), as AD types.</dd></dl>
+<p><b>Note</b> This method is essential for including the effects of screening in the Jacobian matrix of the reaction network. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a1da8242c7591ab32453d1e0109999d6c">gridfire::screening::ScreeningModel</a>.</p>
+
+</div>
+</div>
+<a id="a86a218ce82306ed582296cbeb3de0250" name="a86a218ce82306ed582296cbeb3de0250"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a86a218ce82306ed582296cbeb3de0250">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; double &gt; gridfire::screening::IntermediateScreeningModel::calculateScreeningFactors </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates screening factors for a set of reactions. </p>
+<p>This is a pure virtual function that must be implemented by derived classes. It computes the screening enhancement factor for each reaction in the provided set based on the given plasma conditions.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
+    <tr><td class="paramname">species</td><td>A vector of all atomic species involved in the network. </td></tr>
+    <tr><td class="paramname">Y</td><td>The current composition, providing molar abundances (mol/g) for each species. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The plasma density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of screening factors (dimensionless), one for each reaction in the <code>reactions</code> set, in the same order.</dd></dl>
+<p><b>Pre-conditions</b> </p><ul>
+<li>The size of the <code>Y</code> vector must match the size of the <code>species</code> vector.</li>
+<li><code>T9</code> and <code>rho</code> must be positive.</li>
+</ul>
+<p><b>Post-conditions</b> </p><ul>
+<li>The returned vector will have the same size as the <code>reactions</code> set.</li>
+<li>Each element in the returned vector will be &gt;= 1.0.</li>
+</ul>
+<p><b>Usage</b> </p><div class="fragment"><div class="line"><span class="comment">// Assume &#39;model&#39; is a std::unique_ptr&lt;ScreeningModel&gt; to a concrete implementation</span></div>
+<div class="line"><span class="comment">// and other parameters (reactions, species, Y, T9, rho) are initialized.</span></div>
+<div class="line">std::vector&lt;double&gt; screening_factors = model-&gt;calculateScreeningFactors(</div>
+<div class="line">    reactions, species, Y, T9, rho</div>
+<div class="line">);</div>
+<div class="line"><span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i &lt; reactions.size(); ++i) {</div>
+<div class="line">    <span class="comment">// ... use screening_factors[i] ...</span></div>
+<div class="line">}</div>
+</div><!-- fragment --> 
+<p>Implements <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#ab08c4490f9da18254a7c6f29be1f62ce">gridfire::screening::ScreeningModel</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/screening/<a class="el" href="screening__intermediate_8h.html">screening_intermediate.h</a></li>
+</ul>
+</div><!-- contents -->
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">gridfire::screening::ScreeningModel</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#ab08c4490f9da18254a7c6f29be1f62ce">calculateScreeningFactors</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">gridfire::screening::ScreeningModel</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
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+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">gridfire::screening::ScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-types">Public Types</a> &#124;
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1screening_1_1ScreeningModel-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::screening::ScreeningModel Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>An abstract base class for plasma screening models.  
+ <a href="classgridfire_1_1screening_1_1ScreeningModel.html#details">More...</a></p>
+
+<p><code>#include &lt;screening_abstract.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::screening::ScreeningModel:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1screening_1_1ScreeningModel__inherit__graph.svg" width="416" height="230"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-types" name="pub-types"></a>
+Public Types</h2></td></tr>
+<tr class="memitem:a107ff2897f040d6f27f69d56a0bdd28d" id="r_a107ff2897f040d6f27f69d56a0bdd28d"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> = CppAD::AD&lt; double &gt;</td></tr>
+<tr class="memdesc:a107ff2897f040d6f27f69d56a0bdd28d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Alias for CppAD Automatic Differentiation type for double precision.  <br /></td></tr>
+<tr class="separator:a107ff2897f040d6f27f69d56a0bdd28d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:adef175acdbd911527f56a1f1592579a7" id="r_adef175acdbd911527f56a1f1592579a7"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a> ()=default</td></tr>
+<tr class="memdesc:adef175acdbd911527f56a1f1592579a7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:adef175acdbd911527f56a1f1592579a7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab08c4490f9da18254a7c6f29be1f62ce" id="r_ab08c4490f9da18254a7c6f29be1f62ce"><td class="memItemLeft" align="right" valign="top">virtual std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#ab08c4490f9da18254a7c6f29be1f62ce">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const =0</td></tr>
+<tr class="memdesc:ab08c4490f9da18254a7c6f29be1f62ce"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors for a set of reactions.  <br /></td></tr>
+<tr class="separator:ab08c4490f9da18254a7c6f29be1f62ce"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1da8242c7591ab32453d1e0109999d6c" id="r_a1da8242c7591ab32453d1e0109999d6c"><td class="memItemLeft" align="right" valign="top">virtual std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a1da8242c7591ab32453d1e0109999d6c">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> T9, <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> rho) const =0</td></tr>
+<tr class="memdesc:a1da8242c7591ab32453d1e0109999d6c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates screening factors using CppAD types for automatic differentiation.  <br /></td></tr>
+<tr class="separator:a1da8242c7591ab32453d1e0109999d6c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>An abstract base class for plasma screening models. </p>
+<p>This class defines the interface for models that calculate the enhancement factor for nuclear reaction rates due to the electrostatic screening of interacting nuclei by the surrounding plasma. Concrete implementations of this class will provide specific screening prescriptions (e.g., WEAK, BARE, STRONG, etc.).</p>
+<p>The interface provides methods for calculating screening factors for both standard double-precision inputs and for CppAD's automatic differentiation types, allowing the screening contributions to be included in Jacobian calculations. </p>
+</div><h2 class="groupheader">Member Typedef Documentation</h2>
+<a id="a107ff2897f040d6f27f69d56a0bdd28d" name="a107ff2897f040d6f27f69d56a0bdd28d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a107ff2897f040d6f27f69d56a0bdd28d">&#9670;&#160;</a></span>ADDouble</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">using <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">gridfire::screening::ScreeningModel::ADDouble</a> =  CppAD::AD&lt;double&gt;</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Alias for CppAD Automatic Differentiation type for double precision. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="adef175acdbd911527f56a1f1592579a7" name="adef175acdbd911527f56a1f1592579a7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adef175acdbd911527f56a1f1592579a7">&#9670;&#160;</a></span>~ScreeningModel()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual gridfire::screening::ScreeningModel::~ScreeningModel </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Virtual destructor. </p>
+<p>Ensures that derived class destructors are called correctly. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a1da8242c7591ab32453d1e0109999d6c" name="a1da8242c7591ab32453d1e0109999d6c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1da8242c7591ab32453d1e0109999d6c">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt; gridfire::screening::ScreeningModel::calculateScreeningFactors </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a>&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a>&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates screening factors using CppAD types for automatic differentiation. </p>
+<p>This is a pure virtual function that provides an overload of <code>calculateScreeningFactors</code> for use with CppAD. It allows the derivatives of the screening factors with respect to abundances, temperature, and density to be computed automatically.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
+    <tr><td class="paramname">species</td><td>A vector of all atomic species involved in the network. </td></tr>
+    <tr><td class="paramname">Y</td><td>The current composition, providing molar abundances (mol/g) for each species. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K, as an AD type. </td></tr>
+    <tr><td class="paramname">rho</td><td>The plasma density in g/cm^3, as an AD type. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of screening factors (dimensionless), as AD types.</dd></dl>
+<p><b>Note</b> This method is essential for including the effects of screening in the Jacobian matrix of the reaction network. </p>
+
+<p>Implemented in <a class="el" href="classPyScreening.html#a68a126de903e1a87a1d7d1cfec8add0f">PyScreening</a>, <a class="el" href="classgridfire_1_1screening_1_1IntermediateScreeningModel.html#a765e369256282f0f25e66e13c33dcbd9">gridfire::screening::IntermediateScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#a0ac3685a90c1e65a84e03cfb2fed29e5">gridfire::screening::BareScreeningModel</a>, and <a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html#a8b0590814e7058b4ff3f0cd6f4124773">gridfire::screening::WeakScreeningModel</a>.</p>
+
+</div>
+</div>
+<a id="ab08c4490f9da18254a7c6f29be1f62ce" name="ab08c4490f9da18254a7c6f29be1f62ce"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab08c4490f9da18254a7c6f29be1f62ce">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::vector&lt; double &gt; gridfire::screening::ScreeningModel::calculateScreeningFactors </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates screening factors for a set of reactions. </p>
+<p>This is a pure virtual function that must be implemented by derived classes. It computes the screening enhancement factor for each reaction in the provided set based on the given plasma conditions.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
+    <tr><td class="paramname">species</td><td>A vector of all atomic species involved in the network. </td></tr>
+    <tr><td class="paramname">Y</td><td>The current composition, providing molar abundances (mol/g) for each species. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The plasma density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of screening factors (dimensionless), one for each reaction in the <code>reactions</code> set, in the same order.</dd></dl>
+<p><b>Pre-conditions</b> </p><ul>
+<li>The size of the <code>Y</code> vector must match the size of the <code>species</code> vector.</li>
+<li><code>T9</code> and <code>rho</code> must be positive.</li>
+</ul>
+<p><b>Post-conditions</b> </p><ul>
+<li>The returned vector will have the same size as the <code>reactions</code> set.</li>
+<li>Each element in the returned vector will be &gt;= 1.0.</li>
+</ul>
+<p><b>Usage</b> </p><div class="fragment"><div class="line"><span class="comment">// Assume &#39;model&#39; is a std::unique_ptr&lt;ScreeningModel&gt; to a concrete implementation</span></div>
+<div class="line"><span class="comment">// and other parameters (reactions, species, Y, T9, rho) are initialized.</span></div>
+<div class="line">std::vector&lt;double&gt; screening_factors = model-&gt;calculateScreeningFactors(</div>
+<div class="line">    reactions, species, Y, T9, rho</div>
+<div class="line">);</div>
+<div class="line"><span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i &lt; reactions.size(); ++i) {</div>
+<div class="line">    <span class="comment">// ... use screening_factors[i] ...</span></div>
+<div class="line">}</div>
+</div><!-- fragment --> 
+<p>Implemented in <a class="el" href="classPyScreening.html#aa67b5f0528006d9c742033b8c5ab3a05">PyScreening</a>, <a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#ad252ce1de82401bab24747aabf0c8a3a">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1IntermediateScreeningModel.html#a86a218ce82306ed582296cbeb3de0250">gridfire::screening::IntermediateScreeningModel</a>, and <a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html#a6a215d082b0d05126fb2b19fd1983446">gridfire::screening::WeakScreeningModel</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/screening/<a class="el" href="screening__abstract_8h.html">screening_abstract.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1screening.html">screening</a></li><li class="navelem"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">ScreeningModel</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
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+var classgridfire_1_1screening_1_1ScreeningModel =
+[
+    [ "ADDouble", "classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d", null ],
+    [ "~ScreeningModel", "classgridfire_1_1screening_1_1ScreeningModel.html#adef175acdbd911527f56a1f1592579a7", null ],
+    [ "calculateScreeningFactors", "classgridfire_1_1screening_1_1ScreeningModel.html#a1da8242c7591ab32453d1e0109999d6c", null ],
+    [ "calculateScreeningFactors", "classgridfire_1_1screening_1_1ScreeningModel.html#ab08c4490f9da18254a7c6f29be1f62ce", null ]
+];
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+  <div class="headertitle"><div class="title">gridfire::screening::WeakScreeningModel Member List</div></div>
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+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html">gridfire::screening::WeakScreeningModel</a>, including all inherited members.</p>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">gridfire::screening::ScreeningModel</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html#aa9f95ba8c052dacb72295775516b7e5f">calculateFactors_impl</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; T &gt; &amp;Y, T T9, T rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html">gridfire::screening::WeakScreeningModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html#a6a215d082b0d05126fb2b19fd1983446">calculateScreeningFactors</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html">gridfire::screening::WeakScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html#a8b0590814e7058b4ff3f0cd6f4124773">calculateScreeningFactors</a>(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html">gridfire::screening::WeakScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html#a0a4d7d6d36dbe7b764b613d34f18386f">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html">gridfire::screening::WeakScreeningModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">gridfire::screening::ScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1screening_1_1WeakScreeningModel-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::screening::WeakScreeningModel Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Implements the weak screening model based on the Debye-Hückel approximation.  
+ <a href="classgridfire_1_1screening_1_1WeakScreeningModel.html#details">More...</a></p>
+
+<p><code>#include &lt;screening_weak.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::screening::WeakScreeningModel:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1screening_1_1WeakScreeningModel__inherit__graph.svg" width="182" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::screening::WeakScreeningModel:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1screening_1_1WeakScreeningModel__coll__graph.svg" width="182" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a6a215d082b0d05126fb2b19fd1983446" id="r_a6a215d082b0d05126fb2b19fd1983446"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html#a6a215d082b0d05126fb2b19fd1983446">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</td></tr>
+<tr class="memdesc:a6a215d082b0d05126fb2b19fd1983446"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates weak screening factors for a set of reactions.  <br /></td></tr>
+<tr class="separator:a6a215d082b0d05126fb2b19fd1983446"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8b0590814e7058b4ff3f0cd6f4124773" id="r_a8b0590814e7058b4ff3f0cd6f4124773"><td class="memItemLeft" align="right" valign="top">std::vector&lt; CppAD::AD&lt; double &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html#a8b0590814e7058b4ff3f0cd6f4124773">calculateScreeningFactors</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;Y, CppAD::AD&lt; double &gt; T9, CppAD::AD&lt; double &gt; rho) const override</td></tr>
+<tr class="memdesc:a8b0590814e7058b4ff3f0cd6f4124773"><td class="mdescLeft">&#160;</td><td class="mdescRight">Calculates weak screening factors using CppAD types.  <br /></td></tr>
+<tr class="separator:a8b0590814e7058b4ff3f0cd6f4124773"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1screening_1_1ScreeningModel"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1screening_1_1ScreeningModel')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">gridfire::screening::ScreeningModel</a></td></tr>
+<tr class="memitem:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1ScreeningModel" id="r_adef175acdbd911527f56a1f1592579a7"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a> ()=default</td></tr>
+<tr class="memdesc:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1ScreeningModel"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1ScreeningModel"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:aa9f95ba8c052dacb72295775516b7e5f" id="r_aa9f95ba8c052dacb72295775516b7e5f"><td class="memTemplParams" colspan="2">template&lt;IsArithmeticOrAD T&gt; </td></tr>
+<tr class="memitem:aa9f95ba8c052dacb72295775516b7e5f"><td class="memTemplItemLeft" align="right" valign="top">std::vector&lt; T &gt;&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html#aa9f95ba8c052dacb72295775516b7e5f">calculateFactors_impl</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; T &gt; &amp;Y, T T9, T rho) const</td></tr>
+<tr class="memdesc:aa9f95ba8c052dacb72295775516b7e5f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Template implementation for calculating weak screening factors.  <br /></td></tr>
+<tr class="separator:aa9f95ba8c052dacb72295775516b7e5f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a0a4d7d6d36dbe7b764b613d34f18386f" id="r_a0a4d7d6d36dbe7b764b613d34f18386f"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html#a0a4d7d6d36dbe7b764b613d34f18386f">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="memdesc:a0a4d7d6d36dbe7b764b613d34f18386f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logger instance for recording trace and debug information.  <br /></td></tr>
+<tr class="separator:a0a4d7d6d36dbe7b764b613d34f18386f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_types_classgridfire_1_1screening_1_1ScreeningModel"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classgridfire_1_1screening_1_1ScreeningModel')"><img src="closed.png" alt="-"/>&#160;Public Types inherited from <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">gridfire::screening::ScreeningModel</a></td></tr>
+<tr class="memitem:a107ff2897f040d6f27f69d56a0bdd28d inherit pub_types_classgridfire_1_1screening_1_1ScreeningModel" id="r_a107ff2897f040d6f27f69d56a0bdd28d"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> = CppAD::AD&lt; double &gt;</td></tr>
+<tr class="memdesc:a107ff2897f040d6f27f69d56a0bdd28d inherit pub_types_classgridfire_1_1screening_1_1ScreeningModel"><td class="mdescLeft">&#160;</td><td class="mdescRight">Alias for CppAD Automatic Differentiation type for double precision.  <br /></td></tr>
+<tr class="separator:a107ff2897f040d6f27f69d56a0bdd28d inherit pub_types_classgridfire_1_1screening_1_1ScreeningModel"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Implements the weak screening model based on the Debye-Hückel approximation. </p>
+<p>This class provides a concrete implementation of the <code><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html" title="An abstract base class for plasma screening models.">ScreeningModel</a></code> interface for the weak screening regime, following the formulation of Salpeter (1954). This approach applies the Debye-Hückel theory to model the electrostatic shielding of nuclei in a plasma. It is applicable to non-degenerate, non-relativistic plasmas where thermal energy dominates the electrostatic potential energy. </p>
+</div><h2 class="groupheader">Member Function Documentation</h2>
+<a id="aa9f95ba8c052dacb72295775516b7e5f" name="aa9f95ba8c052dacb72295775516b7e5f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa9f95ba8c052dacb72295775516b7e5f">&#9670;&#160;</a></span>calculateFactors_impl()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;IsArithmeticOrAD T&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; T &gt; gridfire::screening::WeakScreeningModel::calculateFactors_impl </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; T &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">T&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Template implementation for calculating weak screening factors. </p>
+<p>Core implementation of the weak screening calculation (Debye-Hückel model).</p>
+<p>This private helper function contains the core logic for calculating weak screening factors. It is templated to handle both <code>double</code> and <code>CppAD::AD&lt;double&gt;</code> numeric types, avoiding code duplication.</p>
+<dl class="tparams"><dt>Template Parameters</dt><dd>
+  <table class="tparams">
+    <tr><td class="paramname">T</td><td>The numeric type, either <code>double</code> or <code>CppAD::AD&lt;double&gt;</code>. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of reactions. </td></tr>
+    <tr><td class="paramname">species</td><td>A vector of all species in the network. </td></tr>
+    <tr><td class="paramname">Y</td><td>The composition object with current molar abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of screening factors of type <code>T</code>.</dd></dl>
+<p>This function calculates the screening factor <code>exp(H_12)</code> for each reaction, based on the Debye-Hückel approximation as formulated by Salpeter (1954).</p>
+<dl class="tparams"><dt>Template Parameters</dt><dd>
+  <table class="tparams">
+    <tr><td class="paramname">T</td><td>The numeric type (<code>double</code> or <code>CppAD::AD&lt;double&gt;</code>). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of reactions to be screened. </td></tr>
+    <tr><td class="paramname">species</td><td>The list of all species in the network. </td></tr>
+    <tr><td class="paramname">Y</td><td>The composition object providing current molar abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of screening factors, one for each reaction.</dd></dl>
+<p><b>Algorithm</b> </p><ol type="1">
+<li><b>Low-Temperature Cutoff</b>: If T9 is below a small threshold (1e-9), screening is effectively turned off to prevent numerical instability.</li>
+<li><b>Zeta Factor (ζ)</b>: A composition-dependent term is calculated: <code>ζ = ∑(Z_i² + Z_i) * Y_i</code>, where Z_i is the charge and Y_i is the molar abundance of species i.</li>
+<li><b>Prefactor</b>: A key prefactor is computed: <code>prefactor = 0.188 * sqrt(ρ / T₇³) * sqrt(ζ)</code>, where T₇ is the temperature in units of 10^7 K.</li>
+<li><b>Screening Term (H_12)</b>: For each reaction, the term H_12 is calculated:<ul>
+<li>For a two-body reaction (reactants Z₁ and Z₂): <code>H_12 = prefactor * Z₁ * Z₂</code>.</li>
+<li>For the triple-alpha reaction (3 * He4): <code>H_12 = 3 * (prefactor * Z_α * Z_α)</code>.</li>
+<li>For one-body reactions (decays), H_12 is 0, so the factor is 1.</li>
+</ul>
+</li>
+<li><b>Capping</b>: The value of H_12 is capped at 2.0 to prevent excessively large and unphysical screening factors (exp(2) ≈ 7.4).</li>
+<li><b>Final Factor</b>: The screening factor for the reaction is <code>exp(H_12)</code>. </li>
+</ol>
+
+</div>
+</div>
+<a id="a8b0590814e7058b4ff3f0cd6f4124773" name="a8b0590814e7058b4ff3f0cd6f4124773"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8b0590814e7058b4ff3f0cd6f4124773">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> &gt; gridfire::screening::WeakScreeningModel::calculateScreeningFactors </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; CppAD::AD&lt; double &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">CppAD::AD&lt; double &gt;&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates weak screening factors using CppAD types. </p>
+<p>This is the automatic differentiation-compatible version of the method. It allows the derivatives of the screening factors to be computed with respect to plasma conditions.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
+    <tr><td class="paramname">species</td><td>A vector of all atomic species involved in the network. </td></tr>
+    <tr><td class="paramname">Y</td><td>The composition object giving the current molar abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature as an AD type. </td></tr>
+    <tr><td class="paramname">rho</td><td>The plasma density as an AD type. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of screening factors as AD types. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a1da8242c7591ab32453d1e0109999d6c">gridfire::screening::ScreeningModel</a>.</p>
+
+</div>
+</div>
+<a id="a6a215d082b0d05126fb2b19fd1983446" name="a6a215d082b0d05126fb2b19fd1983446"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6a215d082b0d05126fb2b19fd1983446">&#9670;&#160;</a></span>calculateScreeningFactors() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; double &gt; gridfire::screening::WeakScreeningModel::calculateScreeningFactors </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactions</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Calculates weak screening factors for a set of reactions. </p>
+<p>This method computes the screening enhancement factor for each reaction based on the Salpeter (1954) formula.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">reactions</td><td>The set of logical reactions in the network. </td></tr>
+    <tr><td class="paramname">species</td><td>A vector of all atomic species involved in the network. </td></tr>
+    <tr><td class="paramname">Y</td><td>The composition object giving the current molar abundances. </td></tr>
+    <tr><td class="paramname">T9</td><td>The temperature in units of 10^9 K. </td></tr>
+    <tr><td class="paramname">rho</td><td>The plasma density in g/cm^3. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A vector of screening factors (dimensionless), one for each reaction.</dd></dl>
+<p><b>Usage</b> </p><div class="fragment"><div class="line"><a class="code hl_class" href="classgridfire_1_1screening_1_1WeakScreeningModel.html">WeakScreeningModel</a> weak_model;</div>
+<div class="line"><span class="comment">// ... (initialize reactions, species, Y, T9, rho)</span></div>
+<div class="line">std::vector&lt;double&gt; factors = weak_model.<a class="code hl_function" href="classgridfire_1_1screening_1_1WeakScreeningModel.html#a6a215d082b0d05126fb2b19fd1983446">calculateScreeningFactors</a>(</div>
+<div class="line">    reactions, species, Y, T9, rho</div>
+<div class="line">);</div>
+<div class="ttc" id="aclassgridfire_1_1screening_1_1WeakScreeningModel_html"><div class="ttname"><a href="classgridfire_1_1screening_1_1WeakScreeningModel.html">gridfire::screening::WeakScreeningModel</a></div><div class="ttdoc">Implements the weak screening model based on the Debye-Hückel approximation.</div><div class="ttdef"><b>Definition</b> screening_weak.h:27</div></div>
+<div class="ttc" id="aclassgridfire_1_1screening_1_1WeakScreeningModel_html_a6a215d082b0d05126fb2b19fd1983446"><div class="ttname"><a href="classgridfire_1_1screening_1_1WeakScreeningModel.html#a6a215d082b0d05126fb2b19fd1983446">gridfire::screening::WeakScreeningModel::calculateScreeningFactors</a></div><div class="ttdeci">std::vector&lt; double &gt; calculateScreeningFactors(const reaction::ReactionSet &amp;reactions, const std::vector&lt; fourdst::atomic::Species &gt; &amp;species, const std::vector&lt; double &gt; &amp;Y, double T9, double rho) const override</div><div class="ttdoc">Calculates weak screening factors for a set of reactions.</div><div class="ttdef"><b>Definition</b> screening_weak.cpp:22</div></div>
+</div><!-- fragment --> 
+<p>Implements <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#ab08c4490f9da18254a7c6f29be1f62ce">gridfire::screening::ScreeningModel</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a0a4d7d6d36dbe7b764b613d34f18386f" name="a0a4d7d6d36dbe7b764b613d34f18386f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0a4d7d6d36dbe7b764b613d34f18386f">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::screening::WeakScreeningModel::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logger instance for recording trace and debug information. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/screening/<a class="el" href="screening__weak_8h.html">screening_weak.h</a></li>
+<li>src/lib/screening/<a class="el" href="screening__weak_8cpp.html">screening_weak.cpp</a></li>
+</ul>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <div class="headertitle"><div class="title">gridfire::solver::CVODESolverStrategy Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a460c2d19b468769770ec14e52684c0c8">calculate_rhs</a>(sunrealtype t, N_Vector y, N_Vector ydot, const CVODEUserData *data) const</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a7f6786780137de1a136e081c537a9667">cleanup_cvode_resources</a>(bool memFree)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#ae13fc9c21f595edbee1c9b7debaa61b3">cvode_jac_wrapper</a>(sunrealtype t, N_Vector y, N_Vector ydot, SUNMatrix J, void *user_data, N_Vector tmp1, N_Vector tmp2, N_Vector tmp3)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a14c620ef75749c8ef3dfdb84132e5620">cvode_rhs_wrapper</a>(sunrealtype t, N_Vector y, N_Vector ydot, void *user_data)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span><span class="mlabel">static</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a8beeb102d8e459cd133cd1bd5fb7e135">CVODESolverStrategy</a>(engine::DynamicEngine &amp;engine)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a2fa56a2e7a63d31d2afa895a5e4fe827">CVODESolverStrategy</a>(const CVODESolverStrategy &amp;)=delete</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a1f007d68e808ba61f8425d0487432c0d">CVODESolverStrategy</a>(CVODESolverStrategy &amp;&amp;)=delete</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a5dfb7a2ce0008d41dee4aa596a4e1ce4">describe_callback_context</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#ab8224d205ea3a28d9c723631c2f00b53">evaluate</a>(const NetIn &amp;netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a167e44c002243314aa58c84715490804">evaluate</a>(const NetIn &amp;netIn, bool displayTrigger)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#ae98bbc854c88cf4aecf93a9204958a4c">get_absTol</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a103273e838ea10f71a11705046f1f951">get_relTol</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a87b7b39e2a15cc30b118c8e6fda9a1a6">get_stdout_logging_enabled</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#afc6c55237df4af240c4c842305085d91">initialize_cvode_integration_resources</a>(uint64_t N, size_t numSpecies, double current_time, const fourdst::composition::Composition &amp;composition, double absTol, double relTol, double accumulatedEnergy)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a351744e5fcb06ddaf8507358481cfb1e">log_step_diagnostics</a>(const CVODEUserData &amp;user_data, bool displayJacobianStiffness, bool displaySpeciesBalance, bool to_file, std::optional&lt; std::string &gt; filename) const</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a421360b9908ea3e1d7c60a3fb51a2f75">m_absTol</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#aa8fb7a0b39e6bb7b97a4a98422f06482">m_callback</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a202fe9e6499aac5f6813e036ee4ed2d5">m_config</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a50d8f309ca897fa83b16db0a1701b339">m_constraints</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#ab5a8fa55e36685cac50c1dbdd8dbfa57">m_cvode_mem</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a6aed67c333c914551aee9b88fa0af584">m_detailed_step_logging</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#afd1053d0827512b6831ee15f14488c20">m_J</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a5867eb99b00815b8b4f710cb48904dbe">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#af4a2f003a4c4c06b4b72840f2d445f81">m_LS</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#ab7495898e893640670f49308a105658f">m_num_steps</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a4f482b5e68023df9b7522b29dc79c764">m_relTol</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#af3e470b5a6f982c107785c64b169a992">m_stdout_logging_enabled</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#ac57a4f62d95d769c379470e680e6882d">m_sun_ctx</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#aae19c1ec467051404a7bf1d4c7066c22">m_Y</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a0717afcde6fdb71b12490bbcadb5fdb4">m_YErr</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a01cbbec0eb5c3a60f50da38cdaf66505">NetworkSolverStrategy</a>(EngineT &amp;engine)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#af500df838024c82724eaf7fe1cb9b8e8">operator=</a>(const CVODESolverStrategy &amp;)=delete</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#ad26879fafcee9ecb21cc7c5ac0db1692">operator=</a>(CVODESolverStrategy &amp;&amp;)=delete</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#aed8907852f77c15bb40d5a8e8f8af9b2">set_absTol</a>(double absTol)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a77638ef3d2279009e5a57bbd3f0eb63b">set_callback</a>(const std::any &amp;callback) override</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a91966d110ca6225af60b633af5521cb4">set_detailed_step_logging</a>(bool enabled)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a6444290be523ad9fa91fa57c1dd4b6a2">set_relTol</a>(double relTol)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a9857665a1198e24aac6add02afc6e306">set_stdout_logging_enabled</a>(bool logging_enabled)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a89c537c2f34ba3e202374304b7e5990a">TimestepCallback</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#aca2d01a907c3bb828f9f99ad05506578">~CVODESolverStrategy</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a1693dc93f63599c89587d729aca8e318">~NetworkSolverStrategy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#pub-types">Public Types</a> &#124;
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-methods">Private Member Functions</a> &#124;
+<a href="#pri-static-methods">Static Private Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1solver_1_1CVODESolverStrategy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::solver::CVODESolverStrategy Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Stiff ODE integrator backed by SUNDIALS CVODE (BDF) for network + energy.  
+ <a href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#details">More...</a></p>
+
+<p><code>#include &lt;CVODE_solver_strategy.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::solver::CVODESolverStrategy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1solver_1_1CVODESolverStrategy__inherit__graph.svg" width="242" height="124"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::solver::CVODESolverStrategy:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1solver_1_1CVODESolverStrategy__coll__graph.svg" width="242" height="124"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODERHSOutputData.html">CVODERHSOutputData</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html">CVODEUserData</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A helper struct to pass C++ context to C-style CVODE callbacks.  <a href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">TimestepContext</a></td></tr>
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+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-types" name="pub-types"></a>
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+<tr class="memdesc:a89c537c2f34ba3e202374304b7e5990a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Type alias for a timestep callback function.  <br /></td></tr>
+<tr class="separator:a89c537c2f34ba3e202374304b7e5990a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
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+<tr class="memdesc:a8beeb102d8e459cd133cd1bd5fb7e135"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct the CVODE strategy and create a SUNDIALS context.  <br /></td></tr>
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+<tr class="separator:a1f007d68e808ba61f8425d0487432c0d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:ad26879fafcee9ecb21cc7c5ac0db1692"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:ab8224d205ea3a28d9c723631c2f00b53"><td class="mdescLeft">&#160;</td><td class="mdescRight">Integrate from t=0 to netIn.tMax and return final composition and energy.  <br /></td></tr>
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+<tr class="memdesc:a167e44c002243314aa58c84715490804"><td class="mdescLeft">&#160;</td><td class="mdescRight">Call to evaluate which will let the user control if the trigger reasoning is displayed.  <br /></td></tr>
+<tr class="separator:a167e44c002243314aa58c84715490804"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a77638ef3d2279009e5a57bbd3f0eb63b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Install a timestep callback.  <br /></td></tr>
+<tr class="separator:a77638ef3d2279009e5a57bbd3f0eb63b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a87b7b39e2a15cc30b118c8e6fda9a1a6"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a9857665a1198e24aac6add02afc6e306"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:aed8907852f77c15bb40d5a8e8f8af9b2"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a103273e838ea10f71a11705046f1f951"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a5dfb7a2ce0008d41dee4aa596a4e1ce4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Schema of fields exposed to the timestep callback context.  <br /></td></tr>
+<tr class="separator:a5dfb7a2ce0008d41dee4aa596a4e1ce4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1solver_1_1NetworkSolverStrategy"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1solver_1_1NetworkSolverStrategy')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></td></tr>
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+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-methods" name="pri-methods"></a>
+Private Member Functions</h2></td></tr>
+<tr class="memitem:a460c2d19b468769770ec14e52684c0c8" id="r_a460c2d19b468769770ec14e52684c0c8"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODERHSOutputData.html">CVODERHSOutputData</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a460c2d19b468769770ec14e52684c0c8">calculate_rhs</a> (sunrealtype t, N_Vector y, N_Vector ydot, const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html">CVODEUserData</a> *data) const</td></tr>
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+</table><table class="memberdecls">
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+Static Private Member Functions</h2></td></tr>
+<tr class="memitem:a14c620ef75749c8ef3dfdb84132e5620" id="r_a14c620ef75749c8ef3dfdb84132e5620"><td class="memItemLeft" align="right" valign="top">static int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a14c620ef75749c8ef3dfdb84132e5620">cvode_rhs_wrapper</a> (sunrealtype t, N_Vector y, N_Vector ydot, void *user_data)</td></tr>
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+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a202fe9e6499aac5f6813e036ee4ed2d5" id="r_a202fe9e6499aac5f6813e036ee4ed2d5"><td class="memItemLeft" align="right" valign="top">fourdst::config::Config &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a202fe9e6499aac5f6813e036ee4ed2d5">m_config</a> = fourdst::config::Config::getInstance()</td></tr>
+<tr class="separator:a202fe9e6499aac5f6813e036ee4ed2d5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5867eb99b00815b8b4f710cb48904dbe" id="r_a5867eb99b00815b8b4f710cb48904dbe"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a5867eb99b00815b8b4f710cb48904dbe">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="separator:a5867eb99b00815b8b4f710cb48904dbe"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac57a4f62d95d769c379470e680e6882d" id="r_ac57a4f62d95d769c379470e680e6882d"><td class="memItemLeft" align="right" valign="top">SUNContext&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#ac57a4f62d95d769c379470e680e6882d">m_sun_ctx</a> = nullptr</td></tr>
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+<tr class="memitem:ab5a8fa55e36685cac50c1dbdd8dbfa57" id="r_ab5a8fa55e36685cac50c1dbdd8dbfa57"><td class="memItemLeft" align="right" valign="top">void *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#ab5a8fa55e36685cac50c1dbdd8dbfa57">m_cvode_mem</a> = nullptr</td></tr>
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+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pro_attribs_classgridfire_1_1solver_1_1NetworkSolverStrategy"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classgridfire_1_1solver_1_1NetworkSolverStrategy')"><img src="closed.png" alt="-"/>&#160;Protected Attributes inherited from <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></td></tr>
+<tr class="memitem:a724924d94eaf82b67d9988a55c3261e8 inherit pro_attribs_classgridfire_1_1solver_1_1NetworkSolverStrategy" id="r_a724924d94eaf82b67d9988a55c3261e8"><td class="memItemLeft" align="right" valign="top">EngineT &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a></td></tr>
+<tr class="memdesc:a724924d94eaf82b67d9988a55c3261e8 inherit pro_attribs_classgridfire_1_1solver_1_1NetworkSolverStrategy"><td class="mdescLeft">&#160;</td><td class="mdescRight">The engine used by this solver strategy.  <br /></td></tr>
+<tr class="separator:a724924d94eaf82b67d9988a55c3261e8 inherit pro_attribs_classgridfire_1_1solver_1_1NetworkSolverStrategy"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Stiff ODE integrator backed by SUNDIALS CVODE (BDF) for network + energy. </p>
+<p>Integrates the nuclear network abundances along with a final accumulator entry for specific energy using CVODE's BDF method and a dense linear solver. The state vector layout is: [y_0, y_1, ..., y_{N-1}, eps], where eps is the accumulated specific energy (erg/g).</p>
+<p>Implementation summary:</p><ul>
+<li>Creates a SUNContext and CVODE memory; initializes the state from a Composition.</li>
+<li>Enforces non-negativity on species via CVodeSetConstraints (&gt;= 0 for all species slots).</li>
+<li>Uses a user-provided DynamicEngine to compute RHS and to fill the dense Jacobian.</li>
+<li>The Jacobian is assembled column-major into a SUNDenseMatrix; the energy row/column is currently set to zero (decoupled from abundances in the linearization).</li>
+<li>An internal trigger can rebuild the engine/network; when triggered, CVODE resources are torn down and recreated with the new network size, preserving the energy accumulator.</li>
+<li>The CVODE RHS wrapper captures exceptions::StaleEngineTrigger from the engine evaluation path as recoverable (return code 1) and stores a copy in user-data for the driver loop.</li>
+</ul>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keyword">using </span><a class="code hl_class" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a>;</div>
+<div class="line"><span class="keyword">using </span>gridfire::solver::NetIn;</div>
+<div class="line"> </div>
+<div class="line"><a class="code hl_class" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">CVODESolverStrategy</a> solver(engine);</div>
+<div class="line"><a class="code hl_struct" href="structgridfire_1_1NetIn.html">NetIn</a> in;</div>
+<div class="line">in.<a class="code hl_variable" href="structgridfire_1_1NetIn.html#a5be0f5195a5cd1dd177b9fc5ab83a7be">temperature</a> = 1.0e9; <span class="comment">// K</span></div>
+<div class="line">in.<a class="code hl_variable" href="structgridfire_1_1NetIn.html#a06f0dff9f8927b7cf2da3004c8fa1577">density</a> = 1.0e6;     <span class="comment">// g/cm^3</span></div>
+<div class="line">in.<a class="code hl_variable" href="structgridfire_1_1NetIn.html#a0a8d820cfeaa92ee31f253795c57e0d1">tMax</a> = 1.0;          <span class="comment">// s</span></div>
+<div class="line">in.<a class="code hl_variable" href="structgridfire_1_1NetIn.html#a13058f4929e72c1187abbebcddb8aed1">composition</a> = initialComposition;</div>
+<div class="line"><span class="keyword">auto</span> out = solver.evaluate(in);</div>
+<div class="line">std::cout &lt;&lt; <span class="stringliteral">&quot;Final energy: &quot;</span> &lt;&lt; out.energy &lt;&lt; <span class="stringliteral">&quot; erg/g\n&quot;</span>;</div>
+<div class="ttc" id="aclassgridfire_1_1solver_1_1CVODESolverStrategy_html"><div class="ttname"><a href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></div><div class="ttdoc">Stiff ODE integrator backed by SUNDIALS CVODE (BDF) for network + energy.</div><div class="ttdef"><b>Definition</b> CVODE_solver_strategy.h:81</div></div>
+<div class="ttc" id="astructgridfire_1_1NetIn_html"><div class="ttname"><a href="structgridfire_1_1NetIn.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> types.h:27</div></div>
+<div class="ttc" id="astructgridfire_1_1NetIn_html_a06f0dff9f8927b7cf2da3004c8fa1577"><div class="ttname"><a href="structgridfire_1_1NetIn.html#a06f0dff9f8927b7cf2da3004c8fa1577">gridfire::NetIn::density</a></div><div class="ttdeci">double density</div><div class="ttdoc">Density in g/cm^3.</div><div class="ttdef"><b>Definition</b> types.h:32</div></div>
+<div class="ttc" id="astructgridfire_1_1NetIn_html_a0a8d820cfeaa92ee31f253795c57e0d1"><div class="ttname"><a href="structgridfire_1_1NetIn.html#a0a8d820cfeaa92ee31f253795c57e0d1">gridfire::NetIn::tMax</a></div><div class="ttdeci">double tMax</div><div class="ttdoc">Maximum time.</div><div class="ttdef"><b>Definition</b> types.h:29</div></div>
+<div class="ttc" id="astructgridfire_1_1NetIn_html_a13058f4929e72c1187abbebcddb8aed1"><div class="ttname"><a href="structgridfire_1_1NetIn.html#a13058f4929e72c1187abbebcddb8aed1">gridfire::NetIn::composition</a></div><div class="ttdeci">fourdst::composition::Composition composition</div><div class="ttdoc">Composition of the network.</div><div class="ttdef"><b>Definition</b> types.h:28</div></div>
+<div class="ttc" id="astructgridfire_1_1NetIn_html_a5be0f5195a5cd1dd177b9fc5ab83a7be"><div class="ttname"><a href="structgridfire_1_1NetIn.html#a5be0f5195a5cd1dd177b9fc5ab83a7be">gridfire::NetIn::temperature</a></div><div class="ttdeci">double temperature</div><div class="ttdoc">Temperature in Kelvin.</div><div class="ttdef"><b>Definition</b> types.h:31</div></div>
+</div><!-- fragment --> </dd></dl>
+</div><h2 class="groupheader">Member Typedef Documentation</h2>
+<a id="a89c537c2f34ba3e202374304b7e5990a" name="a89c537c2f34ba3e202374304b7e5990a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a89c537c2f34ba3e202374304b7e5990a">&#9670;&#160;</a></span>TimestepCallback</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">using <a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a89c537c2f34ba3e202374304b7e5990a">gridfire::solver::CVODESolverStrategy::TimestepCallback</a> =  std::function&lt;void(const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">TimestepContext</a>&amp; context)&gt;</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Type alias for a timestep callback function. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a8beeb102d8e459cd133cd1bd5fb7e135" name="a8beeb102d8e459cd133cd1bd5fb7e135"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8beeb102d8e459cd133cd1bd5fb7e135">&#9670;&#160;</a></span>CVODESolverStrategy() <span class="overload">[1/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::solver::CVODESolverStrategy::CVODESolverStrategy </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a> &amp;&#160;</td>
+          <td class="paramname"><em>engine</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct the CVODE strategy and create a SUNDIALS context. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">engine</td><td>DynamicEngine used for RHS/Jacobian evaluation and network access. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If SUNContext_Create fails. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="aca2d01a907c3bb828f9f99ad05506578" name="aca2d01a907c3bb828f9f99ad05506578"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aca2d01a907c3bb828f9f99ad05506578">&#9670;&#160;</a></span>~CVODESolverStrategy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::solver::CVODESolverStrategy::~CVODESolverStrategy </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Destructor: cleans CVODE/SUNDIALS resources and frees SUNContext. </p>
+
+</div>
+</div>
+<a id="a2fa56a2e7a63d31d2afa895a5e4fe827" name="a2fa56a2e7a63d31d2afa895a5e4fe827"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2fa56a2e7a63d31d2afa895a5e4fe827">&#9670;&#160;</a></span>CVODESolverStrategy() <span class="overload">[2/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::solver::CVODESolverStrategy::CVODESolverStrategy </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">CVODESolverStrategy</a> &amp;&#160;</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">delete</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a1f007d68e808ba61f8425d0487432c0d" name="a1f007d68e808ba61f8425d0487432c0d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1f007d68e808ba61f8425d0487432c0d">&#9670;&#160;</a></span>CVODESolverStrategy() <span class="overload">[3/3]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::solver::CVODESolverStrategy::CVODESolverStrategy </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">CVODESolverStrategy</a> &amp;&amp;&#160;</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">delete</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a460c2d19b468769770ec14e52684c0c8" name="a460c2d19b468769770ec14e52684c0c8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a460c2d19b468769770ec14e52684c0c8">&#9670;&#160;</a></span>calculate_rhs()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODERHSOutputData.html">CVODESolverStrategy::CVODERHSOutputData</a> gridfire::solver::CVODESolverStrategy::calculate_rhs </td>
+          <td>(</td>
+          <td class="paramtype">sunrealtype&#160;</td>
+          <td class="paramname"><em>t</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector&#160;</td>
+          <td class="paramname"><em>y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector&#160;</td>
+          <td class="paramname"><em>ydot</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html">CVODEUserData</a> *&#160;</td>
+          <td class="paramname"><em>data</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Compute RHS into ydot at time t from the engine and current state y. </p>
+<p>Converts the CVODE state to a Composition (mass fractions) and calls engine.calculateRHSAndEnergy(T9, rho). Negative small abundances are clamped to zero before constructing Composition. On stale engine, throws exceptions::StaleEngineTrigger. </p>
+
+</div>
+</div>
+<a id="a7f6786780137de1a136e081c537a9667" name="a7f6786780137de1a136e081c537a9667"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7f6786780137de1a136e081c537a9667">&#9670;&#160;</a></span>cleanup_cvode_resources()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::solver::CVODESolverStrategy::cleanup_cvode_resources </td>
+          <td>(</td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>memFree</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Destroy CVODE vectors/linear algebra and optionally the CVODE memory block. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">memFree</td><td>If true, also calls CVodeFree on m_cvode_mem. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="ae13fc9c21f595edbee1c9b7debaa61b3" name="ae13fc9c21f595edbee1c9b7debaa61b3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae13fc9c21f595edbee1c9b7debaa61b3">&#9670;&#160;</a></span>cvode_jac_wrapper()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::solver::CVODESolverStrategy::cvode_jac_wrapper </td>
+          <td>(</td>
+          <td class="paramtype">sunrealtype&#160;</td>
+          <td class="paramname"><em>t</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector&#160;</td>
+          <td class="paramname"><em>y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector&#160;</td>
+          <td class="paramname"><em>ydot</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">SUNMatrix&#160;</td>
+          <td class="paramname"><em>J</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">void *&#160;</td>
+          <td class="paramname"><em>user_data</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector&#160;</td>
+          <td class="paramname"><em>tmp1</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector&#160;</td>
+          <td class="paramname"><em>tmp2</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector&#160;</td>
+          <td class="paramname"><em>tmp3</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>CVODE dense Jacobian C-wrapper that fills SUNDenseMatrix using the engine. </p>
+<p>Assembles J(i,j) = d(f_i)/d(y_j) for all species using engine-&gt;getJacobianMatrixEntry, then zeros the last row and column corresponding to the energy variable. </p>
+
+</div>
+</div>
+<a id="a14c620ef75749c8ef3dfdb84132e5620" name="a14c620ef75749c8ef3dfdb84132e5620"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a14c620ef75749c8ef3dfdb84132e5620">&#9670;&#160;</a></span>cvode_rhs_wrapper()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::solver::CVODESolverStrategy::cvode_rhs_wrapper </td>
+          <td>(</td>
+          <td class="paramtype">sunrealtype&#160;</td>
+          <td class="paramname"><em>t</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector&#160;</td>
+          <td class="paramname"><em>y</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">N_Vector&#160;</td>
+          <td class="paramname"><em>ydot</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">void *&#160;</td>
+          <td class="paramname"><em>user_data</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>CVODE RHS C-wrapper that delegates to calculate_rhs and captures exceptions. </p>
+<dl class="section return"><dt>Returns</dt><dd>0 on success; 1 on recoverable StaleEngineTrigger; -1 on other failures. </dd></dl>
+
+</div>
+</div>
+<a id="a5dfb7a2ce0008d41dee4aa596a4e1ce4" name="a5dfb7a2ce0008d41dee4aa596a4e1ce4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5dfb7a2ce0008d41dee4aa596a4e1ce4">&#9670;&#160;</a></span>describe_callback_context()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; std::tuple&lt; std::string, std::string &gt; &gt; gridfire::solver::CVODESolverStrategy::describe_callback_context </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Schema of fields exposed to the timestep callback context. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#ae09169769774f17df8701c42a64ed656">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>.</p>
+
+</div>
+</div>
+<a id="ab8224d205ea3a28d9c723631c2f00b53" name="ab8224d205ea3a28d9c723631c2f00b53"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab8224d205ea3a28d9c723631c2f00b53">&#9670;&#160;</a></span>evaluate() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1NetOut.html">NetOut</a> gridfire::solver::CVODESolverStrategy::evaluate </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Integrate from t=0 to netIn.tMax and return final composition and energy. </p>
+<p>Implementation summary:</p><ul>
+<li>Converts temperature to T9, initializes CVODE memory and state (size = numSpecies + 1).</li>
+<li>Repeatedly calls CVode in single-step or normal mode depending on stdout logging.</li>
+<li>Wraps RHS to capture exceptions::StaleEngineTrigger as a recoverable step failure; if present after a step, it is rethrown for upstream handling.</li>
+<li>Prints/collects diagnostics per step (step size, energy, solver iterations).</li>
+<li>On trigger activation, rebuilds CVODE resources to reflect a changed network and reinitialized the state using the latest engine composition, preserving energy.</li>
+<li>At the end, converts molar abundances to mass fractions and assembles <a class="el" href="structgridfire_1_1NetOut.html">NetOut</a>, including derivatives of energy w.r.t. T and rho from the engine.</li>
+</ul>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>Inputs: temperature [K], density [g cm^-3], tMax [s], composition. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1NetOut.html">NetOut</a> containing final Composition, accumulated energy [erg/g], step count, and dEps/dT, dEps/dRho. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If any CVODE or SUNDIALS call fails (negative return codes), or if internal consistency checks fail during engine updates. </td></tr>
+    <tr><td class="paramname">exceptions::StaleEngineTrigger</td><td>Propagated if the engine signals a stale state during RHS evaluation (captured in the wrapper then rethrown here). </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#ace539b0482db171845ff1bd38d76b70f">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a167e44c002243314aa58c84715490804" name="a167e44c002243314aa58c84715490804"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a167e44c002243314aa58c84715490804">&#9670;&#160;</a></span>evaluate() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1NetOut.html">NetOut</a> gridfire::solver::CVODESolverStrategy::evaluate </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>displayTrigger</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Call to evaluate which will let the user control if the trigger reasoning is displayed. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>Inputs: temperature [K], density [g cm^-3], tMax [s], composition. </td></tr>
+    <tr><td class="paramname">displayTrigger</td><td>Boolean flag to control if trigger reasoning is displayed </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1NetOut.html">NetOut</a> containing final Composition, accumulated energy [erg/g], step count, and dEps/dT, dEps/dRho. </dd></dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::runtime_error</td><td>If any CVODE or SUNDIALS call fails (negative return codes), or if internal consistency checks fail during engine updates. </td></tr>
+    <tr><td class="paramname">exceptions::StaleEngineTrigger</td><td>Propagated if the engine signals a stale state during RHS evaluation (captured in the wrapper then rethrown here). </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="ae98bbc854c88cf4aecf93a9204958a4c" name="ae98bbc854c88cf4aecf93a9204958a4c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae98bbc854c88cf4aecf93a9204958a4c">&#9670;&#160;</a></span>get_absTol()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::solver::CVODESolverStrategy::get_absTol </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a103273e838ea10f71a11705046f1f951" name="a103273e838ea10f71a11705046f1f951"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a103273e838ea10f71a11705046f1f951">&#9670;&#160;</a></span>get_relTol()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::solver::CVODESolverStrategy::get_relTol </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a87b7b39e2a15cc30b118c8e6fda9a1a6" name="a87b7b39e2a15cc30b118c8e6fda9a1a6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a87b7b39e2a15cc30b118c8e6fda9a1a6">&#9670;&#160;</a></span>get_stdout_logging_enabled()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::solver::CVODESolverStrategy::get_stdout_logging_enabled </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Whether per-step logs are printed to stdout and CVode is stepped with CV_ONE_STEP. </p>
+
+</div>
+</div>
+<a id="afc6c55237df4af240c4c842305085d91" name="afc6c55237df4af240c4c842305085d91"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afc6c55237df4af240c4c842305085d91">&#9670;&#160;</a></span>initialize_cvode_integration_resources()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::solver::CVODESolverStrategy::initialize_cvode_integration_resources </td>
+          <td>(</td>
+          <td class="paramtype">uint64_t&#160;</td>
+          <td class="paramname"><em>N</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>numSpecies</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>current_time</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>composition</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>absTol</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>relTol</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>accumulatedEnergy</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Allocate and initialize CVODE vectors, linear algebra, tolerances, and constraints. </p>
+<p>State vector m_Y is sized to N (numSpecies + 1). Species slots are initialized from Composition molar abundances when present, otherwise a tiny positive value; the last slot is set to accumulatedEnergy. Sets scalar tolerances, non-negativity constraints for species, maximum step size, creates a dense matrix and dense linear solver, and registers the Jacobian. </p>
+
+</div>
+</div>
+<a id="a351744e5fcb06ddaf8507358481cfb1e" name="a351744e5fcb06ddaf8507358481cfb1e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a351744e5fcb06ddaf8507358481cfb1e">&#9670;&#160;</a></span>log_step_diagnostics()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::solver::CVODESolverStrategy::log_step_diagnostics </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html">CVODEUserData</a> &amp;&#160;</td>
+          <td class="paramname"><em>user_data</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>displayJacobianStiffness</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>displaySpeciesBalance</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>to_file</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">std::optional&lt; std::string &gt;&#160;</td>
+          <td class="paramname"><em>filename</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Compute and print per-component error ratios; run diagnostic helpers. </p>
+<p>Gathers CVODE's estimated local errors, converts the state to a Composition, and prints a sorted table of species with the highest error ratios; then invokes diagnostic routines to inspect Jacobian stiffness and species balance. </p>
+
+</div>
+</div>
+<a id="af500df838024c82724eaf7fe1cb9b8e8" name="af500df838024c82724eaf7fe1cb9b8e8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af500df838024c82724eaf7fe1cb9b8e8">&#9670;&#160;</a></span>operator=() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">CVODESolverStrategy</a> &amp; gridfire::solver::CVODESolverStrategy::operator= </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">CVODESolverStrategy</a> &amp;&#160;</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">delete</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ad26879fafcee9ecb21cc7c5ac0db1692" name="ad26879fafcee9ecb21cc7c5ac0db1692"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad26879fafcee9ecb21cc7c5ac0db1692">&#9670;&#160;</a></span>operator=() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">CVODESolverStrategy</a> &amp; gridfire::solver::CVODESolverStrategy::operator= </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">CVODESolverStrategy</a> &amp;&amp;&#160;</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">delete</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aed8907852f77c15bb40d5a8e8f8af9b2" name="aed8907852f77c15bb40d5a8e8f8af9b2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aed8907852f77c15bb40d5a8e8f8af9b2">&#9670;&#160;</a></span>set_absTol()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::solver::CVODESolverStrategy::set_absTol </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>absTol</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a77638ef3d2279009e5a57bbd3f0eb63b" name="a77638ef3d2279009e5a57bbd3f0eb63b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a77638ef3d2279009e5a57bbd3f0eb63b">&#9670;&#160;</a></span>set_callback()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::solver::CVODESolverStrategy::set_callback </td>
+          <td>(</td>
+          <td class="paramtype">const std::any &amp;&#160;</td>
+          <td class="paramname"><em>callback</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Install a timestep callback. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">callback</td><td>std::any containing TimestepCallback (std::function&lt;void(const TimestepContext&amp;)&gt;). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::bad_any_cast</td><td>If callback is not of the expected type. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a4d97ee85933d5e5f90d4194bb021a1dc">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a91966d110ca6225af60b633af5521cb4" name="a91966d110ca6225af60b633af5521cb4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a91966d110ca6225af60b633af5521cb4">&#9670;&#160;</a></span>set_detailed_step_logging()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::solver::CVODESolverStrategy::set_detailed_step_logging </td>
+          <td>(</td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>enabled</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a6444290be523ad9fa91fa57c1dd4b6a2" name="a6444290be523ad9fa91fa57c1dd4b6a2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6444290be523ad9fa91fa57c1dd4b6a2">&#9670;&#160;</a></span>set_relTol()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::solver::CVODESolverStrategy::set_relTol </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>relTol</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a9857665a1198e24aac6add02afc6e306" name="a9857665a1198e24aac6add02afc6e306"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9857665a1198e24aac6add02afc6e306">&#9670;&#160;</a></span>set_stdout_logging_enabled()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::solver::CVODESolverStrategy::set_stdout_logging_enabled </td>
+          <td>(</td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>logging_enabled</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Enable/disable per-step stdout logging. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">logging_enabled</td><td>Flag to control if a timestep summary is written to standard output or not </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a421360b9908ea3e1d7c60a3fb51a2f75" name="a421360b9908ea3e1d7c60a3fb51a2f75"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a421360b9908ea3e1d7c60a3fb51a2f75">&#9670;&#160;</a></span>m_absTol</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::optional&lt;double&gt; gridfire::solver::CVODESolverStrategy::m_absTol</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>User-specified absolute tolerance. </p>
+
+</div>
+</div>
+<a id="aa8fb7a0b39e6bb7b97a4a98422f06482" name="aa8fb7a0b39e6bb7b97a4a98422f06482"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa8fb7a0b39e6bb7b97a4a98422f06482">&#9670;&#160;</a></span>m_callback</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::optional&lt;<a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a89c537c2f34ba3e202374304b7e5990a">TimestepCallback</a>&gt; gridfire::solver::CVODESolverStrategy::m_callback</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Optional per-step callback. </p>
+
+</div>
+</div>
+<a id="a202fe9e6499aac5f6813e036ee4ed2d5" name="a202fe9e6499aac5f6813e036ee4ed2d5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a202fe9e6499aac5f6813e036ee4ed2d5">&#9670;&#160;</a></span>m_config</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::config::Config&amp; gridfire::solver::CVODESolverStrategy::m_config = fourdst::config::Config::getInstance()</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a50d8f309ca897fa83b16db0a1701b339" name="a50d8f309ca897fa83b16db0a1701b339"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a50d8f309ca897fa83b16db0a1701b339">&#9670;&#160;</a></span>m_constraints</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">N_Vector gridfire::solver::CVODESolverStrategy::m_constraints = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>CVODE constraints vector (&gt;= 0 for species entries). </p>
+
+</div>
+</div>
+<a id="ab5a8fa55e36685cac50c1dbdd8dbfa57" name="ab5a8fa55e36685cac50c1dbdd8dbfa57"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab5a8fa55e36685cac50c1dbdd8dbfa57">&#9670;&#160;</a></span>m_cvode_mem</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void* gridfire::solver::CVODESolverStrategy::m_cvode_mem = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>CVODE memory block. </p>
+
+</div>
+</div>
+<a id="a6aed67c333c914551aee9b88fa0af584" name="a6aed67c333c914551aee9b88fa0af584"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6aed67c333c914551aee9b88fa0af584">&#9670;&#160;</a></span>m_detailed_step_logging</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::solver::CVODESolverStrategy::m_detailed_step_logging = false</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>If true, log detailed step diagnostics (error ratios, Jacobian, species balance). </p>
+
+</div>
+</div>
+<a id="afd1053d0827512b6831ee15f14488c20" name="afd1053d0827512b6831ee15f14488c20"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afd1053d0827512b6831ee15f14488c20">&#9670;&#160;</a></span>m_J</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">SUNMatrix gridfire::solver::CVODESolverStrategy::m_J = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Dense Jacobian matrix. </p>
+
+</div>
+</div>
+<a id="a5867eb99b00815b8b4f710cb48904dbe" name="a5867eb99b00815b8b4f710cb48904dbe"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5867eb99b00815b8b4f710cb48904dbe">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::solver::CVODESolverStrategy::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="af4a2f003a4c4c06b4b72840f2d445f81" name="af4a2f003a4c4c06b4b72840f2d445f81"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af4a2f003a4c4c06b4b72840f2d445f81">&#9670;&#160;</a></span>m_LS</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">SUNLinearSolver gridfire::solver::CVODESolverStrategy::m_LS = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Dense linear solver. </p>
+
+</div>
+</div>
+<a id="ab7495898e893640670f49308a105658f" name="ab7495898e893640670f49308a105658f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab7495898e893640670f49308a105658f">&#9670;&#160;</a></span>m_num_steps</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">int gridfire::solver::CVODESolverStrategy::m_num_steps = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>CVODE step counter (used for diagnostics and triggers). </p>
+
+</div>
+</div>
+<a id="a4f482b5e68023df9b7522b29dc79c764" name="a4f482b5e68023df9b7522b29dc79c764"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4f482b5e68023df9b7522b29dc79c764">&#9670;&#160;</a></span>m_relTol</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::optional&lt;double&gt; gridfire::solver::CVODESolverStrategy::m_relTol</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>User-specified relative tolerance. </p>
+
+</div>
+</div>
+<a id="af3e470b5a6f982c107785c64b169a992" name="af3e470b5a6f982c107785c64b169a992"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af3e470b5a6f982c107785c64b169a992">&#9670;&#160;</a></span>m_stdout_logging_enabled</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::solver::CVODESolverStrategy::m_stdout_logging_enabled = true</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>If true, print per-step logs and use CV_ONE_STEP. </p>
+
+</div>
+</div>
+<a id="ac57a4f62d95d769c379470e680e6882d" name="ac57a4f62d95d769c379470e680e6882d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac57a4f62d95d769c379470e680e6882d">&#9670;&#160;</a></span>m_sun_ctx</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">SUNContext gridfire::solver::CVODESolverStrategy::m_sun_ctx = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>SUNDIALS context (lifetime of the solver). </p>
+
+</div>
+</div>
+<a id="aae19c1ec467051404a7bf1d4c7066c22" name="aae19c1ec467051404a7bf1d4c7066c22"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aae19c1ec467051404a7bf1d4c7066c22">&#9670;&#160;</a></span>m_Y</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">N_Vector gridfire::solver::CVODESolverStrategy::m_Y = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>CVODE state vector (species + energy accumulator). </p>
+
+</div>
+</div>
+<a id="a0717afcde6fdb71b12490bbcadb5fdb4" name="a0717afcde6fdb71b12490bbcadb5fdb4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0717afcde6fdb71b12490bbcadb5fdb4">&#9670;&#160;</a></span>m_YErr</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">N_Vector gridfire::solver::CVODESolverStrategy::m_YErr = nullptr</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Estimated local errors. </p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/solver/strategies/<a class="el" href="CVODE__solver__strategy_8h.html">CVODE_solver_strategy.h</a></li>
+<li>src/lib/solver/strategies/<a class="el" href="CVODE__solver__strategy_8cpp.html">CVODE_solver_strategy.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1solver.html">solver</a></li><li class="navelem"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">CVODESolverStrategy</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
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index 00000000..a172038b
--- /dev/null
+++ b/docs/html/classgridfire_1_1solver_1_1CVODESolverStrategy.js
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+    [ "evaluate", "classgridfire_1_1solver_1_1CVODESolverStrategy.html#ab8224d205ea3a28d9c723631c2f00b53", null ],
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+  <div class="headertitle"><div class="title">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt; Member List</div></div>
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+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>, including all inherited members.</p>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#ae09169769774f17df8701c42a64ed656">describe_callback_context</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#ace539b0482db171845ff1bd38d76b70f">evaluate</a>(const NetIn &amp;netIn)=0</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a></td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></td><td class="entry"><span class="mlabel">protected</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a01cbbec0eb5c3a60f50da38cdaf66505">NetworkSolverStrategy</a>(EngineT &amp;engine)</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a4d97ee85933d5e5f90d4194bb021a1dc">set_callback</a>(const std::any &amp;callback)=0</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a1693dc93f63599c89587d729aca8e318">~NetworkSolverStrategy</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pro-attribs">Protected Attributes</a> &#124;
+<a href="classgridfire_1_1solver_1_1NetworkSolverStrategy-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt; Class Template Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Abstract base class for network solver strategies.  
+ <a href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#details">More...</a></p>
+
+<p><code>#include &lt;strategy_abstract.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1solver_1_1NetworkSolverStrategy__inherit__graph.svg" width="492" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a01cbbec0eb5c3a60f50da38cdaf66505" id="r_a01cbbec0eb5c3a60f50da38cdaf66505"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a01cbbec0eb5c3a60f50da38cdaf66505">NetworkSolverStrategy</a> (EngineT &amp;engine)</td></tr>
+<tr class="memdesc:a01cbbec0eb5c3a60f50da38cdaf66505"><td class="mdescLeft">&#160;</td><td class="mdescRight">Constructor for the <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html" title="Abstract base class for network solver strategies.">NetworkSolverStrategy</a>.  <br /></td></tr>
+<tr class="separator:a01cbbec0eb5c3a60f50da38cdaf66505"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1693dc93f63599c89587d729aca8e318" id="r_a1693dc93f63599c89587d729aca8e318"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a1693dc93f63599c89587d729aca8e318">~NetworkSolverStrategy</a> ()=default</td></tr>
+<tr class="memdesc:a1693dc93f63599c89587d729aca8e318"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor.  <br /></td></tr>
+<tr class="separator:a1693dc93f63599c89587d729aca8e318"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ace539b0482db171845ff1bd38d76b70f" id="r_ace539b0482db171845ff1bd38d76b70f"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="structgridfire_1_1NetOut.html">NetOut</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#ace539b0482db171845ff1bd38d76b70f">evaluate</a> (const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;netIn)=0</td></tr>
+<tr class="memdesc:ace539b0482db171845ff1bd38d76b70f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluates the network for a given timestep.  <br /></td></tr>
+<tr class="separator:ace539b0482db171845ff1bd38d76b70f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4d97ee85933d5e5f90d4194bb021a1dc" id="r_a4d97ee85933d5e5f90d4194bb021a1dc"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a4d97ee85933d5e5f90d4194bb021a1dc">set_callback</a> (const std::any &amp;callback)=0</td></tr>
+<tr class="memdesc:a4d97ee85933d5e5f90d4194bb021a1dc"><td class="mdescLeft">&#160;</td><td class="mdescRight">set the callback function to be called at the end of each timestep.  <br /></td></tr>
+<tr class="separator:a4d97ee85933d5e5f90d4194bb021a1dc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae09169769774f17df8701c42a64ed656" id="r_ae09169769774f17df8701c42a64ed656"><td class="memItemLeft" align="right" valign="top">virtual std::vector&lt; std::tuple&lt; std::string, std::string &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#ae09169769774f17df8701c42a64ed656">describe_callback_context</a> () const =0</td></tr>
+<tr class="memdesc:ae09169769774f17df8701c42a64ed656"><td class="mdescLeft">&#160;</td><td class="mdescRight">Describe the context that will be passed to the callback function.  <br /></td></tr>
+<tr class="separator:ae09169769774f17df8701c42a64ed656"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pro-attribs" name="pro-attribs"></a>
+Protected Attributes</h2></td></tr>
+<tr class="memitem:a724924d94eaf82b67d9988a55c3261e8" id="r_a724924d94eaf82b67d9988a55c3261e8"><td class="memItemLeft" align="right" valign="top">EngineT &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a724924d94eaf82b67d9988a55c3261e8">m_engine</a></td></tr>
+<tr class="memdesc:a724924d94eaf82b67d9988a55c3261e8"><td class="mdescLeft">&#160;</td><td class="mdescRight">The engine used by this solver strategy.  <br /></td></tr>
+<tr class="separator:a724924d94eaf82b67d9988a55c3261e8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><div class="compoundTemplParams">template&lt;typename EngineT&gt;<br />
+class gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</div><p>Abstract base class for network solver strategies. </p>
+<p>This class defines the interface for network solver strategies, which are responsible for integrating the reaction network ODEs over a given timestep. It is templated on the engine type to allow for different engine implementations to be used with the same solver.</p>
+<dl class="tparams"><dt>Template Parameters</dt><dd>
+  <table class="tparams">
+    <tr><td class="paramname">EngineT</td><td>The type of engine to use with this solver strategy. Must inherit from Engine. </td></tr>
+  </table>
+  </dd>
+</dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a01cbbec0eb5c3a60f50da38cdaf66505" name="a01cbbec0eb5c3a60f50da38cdaf66505"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a01cbbec0eb5c3a60f50da38cdaf66505">&#9670;&#160;</a></span>NetworkSolverStrategy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename EngineT &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy</a>&lt; EngineT &gt;::NetworkSolverStrategy </td>
+          <td>(</td>
+          <td class="paramtype">EngineT &amp;&#160;</td>
+          <td class="paramname"><em>engine</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Constructor for the <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html" title="Abstract base class for network solver strategies.">NetworkSolverStrategy</a>. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">engine</td><td>The engine to use for evaluating the network. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="a1693dc93f63599c89587d729aca8e318" name="a1693dc93f63599c89587d729aca8e318"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1693dc93f63599c89587d729aca8e318">&#9670;&#160;</a></span>~NetworkSolverStrategy()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename EngineT &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy</a>&lt; EngineT &gt;::~<a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">NetworkSolverStrategy</a> </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Virtual destructor. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ae09169769774f17df8701c42a64ed656" name="ae09169769774f17df8701c42a64ed656"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae09169769774f17df8701c42a64ed656">&#9670;&#160;</a></span>describe_callback_context()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename EngineT &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::vector&lt; std::tuple&lt; std::string, std::string &gt; &gt; <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy</a>&lt; EngineT &gt;::describe_callback_context </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Describe the context that will be passed to the callback function. </p>
+<dl class="section return"><dt>Returns</dt><dd>A vector of tuples, each containing a string for the parameter's name and a string for its type.</dd></dl>
+<p>This method should be overridden by derived classes to provide a description of the context that will be passed to the callback function. The intent of this method is that an end user can investigate the context that will be passed to the callback function, and use this information to craft their own callback function. </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a5dfb7a2ce0008d41dee4aa596a4e1ce4">gridfire::solver::CVODESolverStrategy</a>, and <a class="el" href="classPyDynamicNetworkSolverStrategy.html#a147a0a543268427a5930143902217ac3">PyDynamicNetworkSolverStrategy</a>.</p>
+
+</div>
+</div>
+<a id="ace539b0482db171845ff1bd38d76b70f" name="ace539b0482db171845ff1bd38d76b70f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ace539b0482db171845ff1bd38d76b70f">&#9670;&#160;</a></span>evaluate()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename EngineT &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="structgridfire_1_1NetOut.html">NetOut</a> <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy</a>&lt; EngineT &gt;::evaluate </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluates the network for a given timestep. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">netIn</td><td>The input conditions for the network. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The output conditions after the timestep. </dd></dl>
+
+<p>Implemented in <a class="el" href="classPyDynamicNetworkSolverStrategy.html#a2095abb83ed6229ebb27b4883cec51c4">PyDynamicNetworkSolverStrategy</a>, and <a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#ab8224d205ea3a28d9c723631c2f00b53">gridfire::solver::CVODESolverStrategy</a>.</p>
+
+</div>
+</div>
+<a id="a4d97ee85933d5e5f90d4194bb021a1dc" name="a4d97ee85933d5e5f90d4194bb021a1dc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4d97ee85933d5e5f90d4194bb021a1dc">&#9670;&#160;</a></span>set_callback()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename EngineT &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual void <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">gridfire::solver::NetworkSolverStrategy</a>&lt; EngineT &gt;::set_callback </td>
+          <td>(</td>
+          <td class="paramtype">const std::any &amp;&#160;</td>
+          <td class="paramname"><em>callback</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>set the callback function to be called at the end of each timestep. </p>
+<p>This function allows the user to set a callback function that will be called at the end of each timestep. The callback function will receive a <a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>::&lt;SOMESOLVER&gt;::TimestepContext object. Note that depending on the solver, this context may contain different information. Further, the exact signature of the callback function is left up to each solver. Every solver should provide a type or type alias TimestepCallback that defines the signature of the callback function so that the user can easily get that type information.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">callback</td><td>The callback function to be called at the end of each timestep. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a77638ef3d2279009e5a57bbd3f0eb63b">gridfire::solver::CVODESolverStrategy</a>, and <a class="el" href="classPyDynamicNetworkSolverStrategy.html#a112a7babc03858a69d6994a7155370d3">PyDynamicNetworkSolverStrategy</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
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+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1solver_1_1SolverContextBase-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::solver::SolverContextBase Struct Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Base class for solver callback contexts.  
+ <a href="classgridfire_1_1solver_1_1SolverContextBase.html#details">More...</a></p>
+
+<p><code>#include &lt;strategy_abstract.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::solver::SolverContextBase:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1solver_1_1SolverContextBase__inherit__graph.svg" width="408" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:ab1abf9e5ff7f53a6cebe5e00ea5fc0c8" id="r_ab1abf9e5ff7f53a6cebe5e00ea5fc0c8"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1SolverContextBase.html#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8">~SolverContextBase</a> ()=default</td></tr>
+<tr class="separator:ab1abf9e5ff7f53a6cebe5e00ea5fc0c8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9cbef3cabc8524e542613ee50d8860c6" id="r_a9cbef3cabc8524e542613ee50d8860c6"><td class="memItemLeft" align="right" valign="top">virtual std::vector&lt; std::tuple&lt; std::string, std::string &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1SolverContextBase.html#a9cbef3cabc8524e542613ee50d8860c6">describe</a> () const =0</td></tr>
+<tr class="memdesc:a9cbef3cabc8524e542613ee50d8860c6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Describe the context for callback functions.  <br /></td></tr>
+<tr class="separator:a9cbef3cabc8524e542613ee50d8860c6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Base class for solver callback contexts. </p>
+<p>This struct serves as a base class for contexts that can be passed to solver callbacks, it enforces that derived classes implement a <code>describe</code> method that returns a vector of tuples describing the context that a callback will receive when called. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="ab1abf9e5ff7f53a6cebe5e00ea5fc0c8" name="ab1abf9e5ff7f53a6cebe5e00ea5fc0c8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8">&#9670;&#160;</a></span>~SolverContextBase()</h2>
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+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual gridfire::solver::SolverContextBase::~SolverContextBase </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
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+  </tr>
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+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a9cbef3cabc8524e542613ee50d8860c6" name="a9cbef3cabc8524e542613ee50d8860c6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9cbef3cabc8524e542613ee50d8860c6">&#9670;&#160;</a></span>describe()</h2>
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+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::vector&lt; std::tuple&lt; std::string, std::string &gt; &gt; gridfire::solver::SolverContextBase::describe </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
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+<p>Describe the context for callback functions. </p>
+<dl class="section return"><dt>Returns</dt><dd>A vector of tuples, each containing a string for the parameters name and a string for its type.</dd></dl>
+<p>This method should be overridden by derived classes to provide a description of the context that will be passed to the callback function. The intent of this method is that an end user can investigate the context that will be passed to the callback function, and use this information to craft their own callback function. </p>
+
+<p>Implemented in <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#ae3c6320ce7a8f41c9ae36c42d62b4204">gridfire::solver::CVODESolverStrategy::TimestepContext</a>, and <a class="el" href="classPySolverContextBase.html#af18f517d550c037d56c44144c07f1ee8">PySolverContextBase</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
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+  <div class="headertitle"><div class="title">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt; Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a969738baf0bda97664715937d4bc403e">AndTrigger</a>(std::unique_ptr&lt; Trigger&lt; TriggerContextStruct &gt; &gt; A, std::unique_ptr&lt; Trigger&lt; TriggerContextStruct &gt; &gt; B)</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#aaefdfa86856f9f7839b6a7fdffa4a579">check</a>(const TriggerContextStruct &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a2dcd635c6bdbcfe517adca6e2bd5c408">describe</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a99be74b126d50c15d21c0724d933af87">m_A</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#af8ee88421d0dfd92de6df96d686ece38">m_B</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a43e6a9c01b163ab92a0b413bfba52ef5">m_hits</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a1714656e907edfcba2d354ff5d7c9ceb">m_misses</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#ae3ff88ddb15d04e798fc03c6c941e312">m_resets</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#afd8d79e83f83473f0df64e96b63aa1f1">m_steps</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a7f88c1139e1b05baed44614104d601b4">m_updates</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#ab78539e5cd88194ab9e98434793eae3f">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#addfd61f8cb234881f535fb8f4d618d74">numMisses</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#afffb4281569963183d7db3ed1568eb3a">numTriggers</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a2436d8643911ade907e03fb29531ceaa">reset</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a8e743e8ebe71f9ded835177db6fad908">step</a>(const TriggerContextStruct &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a62f7dbbcf0554caa68e3d778580b3c1d">update</a>(const TriggerContextStruct &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a01033721e8f5d90483d65c904399cf96">why</a>(const TriggerContextStruct &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a2ee18348ca65cc1aa56eb41292a39bc5">~AndTrigger</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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diff --git a/docs/html/classgridfire_1_1trigger_1_1AndTrigger.html b/docs/html/classgridfire_1_1trigger_1_1AndTrigger.html
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+<title>GridFire: gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt; Class Template Reference</title>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1trigger_1_1AndTrigger-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt; Class Template Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Logical conjunction of two triggers with short-circuit evaluation.  
+ <a href="classgridfire_1_1trigger_1_1AndTrigger.html#details">More...</a></p>
+
+<p><code>#include &lt;trigger_logical.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1trigger_1_1AndTrigger__inherit__graph.svg" width="240" height="256"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1trigger_1_1AndTrigger__coll__graph.svg" width="100%" height="408"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a969738baf0bda97664715937d4bc403e" id="r_a969738baf0bda97664715937d4bc403e"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a969738baf0bda97664715937d4bc403e">AndTrigger</a> (std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt; A, std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt; B)</td></tr>
+<tr class="memdesc:a969738baf0bda97664715937d4bc403e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct AND from two triggers (ownership transferred).  <br /></td></tr>
+<tr class="separator:a969738baf0bda97664715937d4bc403e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2ee18348ca65cc1aa56eb41292a39bc5" id="r_a2ee18348ca65cc1aa56eb41292a39bc5"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a2ee18348ca65cc1aa56eb41292a39bc5">~AndTrigger</a> () override=default</td></tr>
+<tr class="separator:a2ee18348ca65cc1aa56eb41292a39bc5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aaefdfa86856f9f7839b6a7fdffa4a579" id="r_aaefdfa86856f9f7839b6a7fdffa4a579"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#aaefdfa86856f9f7839b6a7fdffa4a579">check</a> (const TriggerContextStruct &amp;ctx) const override</td></tr>
+<tr class="memdesc:aaefdfa86856f9f7839b6a7fdffa4a579"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate A &amp;&amp; B; increments hit/miss counters.  <br /></td></tr>
+<tr class="separator:aaefdfa86856f9f7839b6a7fdffa4a579"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a62f7dbbcf0554caa68e3d778580b3c1d" id="r_a62f7dbbcf0554caa68e3d778580b3c1d"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a62f7dbbcf0554caa68e3d778580b3c1d">update</a> (const TriggerContextStruct &amp;ctx) override</td></tr>
+<tr class="memdesc:a62f7dbbcf0554caa68e3d778580b3c1d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update both sub-triggers and increment update counter.  <br /></td></tr>
+<tr class="separator:a62f7dbbcf0554caa68e3d778580b3c1d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8e743e8ebe71f9ded835177db6fad908" id="r_a8e743e8ebe71f9ded835177db6fad908"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a8e743e8ebe71f9ded835177db6fad908">step</a> (const TriggerContextStruct &amp;ctx) override</td></tr>
+<tr class="memdesc:a8e743e8ebe71f9ded835177db6fad908"><td class="mdescLeft">&#160;</td><td class="mdescRight">similar to update but intended to be run on every step not just those where the trigger triggered  <br /></td></tr>
+<tr class="separator:a8e743e8ebe71f9ded835177db6fad908"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2436d8643911ade907e03fb29531ceaa" id="r_a2436d8643911ade907e03fb29531ceaa"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a2436d8643911ade907e03fb29531ceaa">reset</a> () override</td></tr>
+<tr class="memdesc:a2436d8643911ade907e03fb29531ceaa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset both sub-triggers and local counters.  <br /></td></tr>
+<tr class="separator:a2436d8643911ade907e03fb29531ceaa"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab78539e5cd88194ab9e98434793eae3f" id="r_ab78539e5cd88194ab9e98434793eae3f"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#ab78539e5cd88194ab9e98434793eae3f">name</a> () const override</td></tr>
+<tr class="memdesc:ab78539e5cd88194ab9e98434793eae3f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable name.  <br /></td></tr>
+<tr class="separator:ab78539e5cd88194ab9e98434793eae3f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a01033721e8f5d90483d65c904399cf96" id="r_a01033721e8f5d90483d65c904399cf96"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a01033721e8f5d90483d65c904399cf96">why</a> (const TriggerContextStruct &amp;ctx) const override</td></tr>
+<tr class="memdesc:a01033721e8f5d90483d65c904399cf96"><td class="mdescLeft">&#160;</td><td class="mdescRight">Structured explanation; short-circuits on A=false.  <br /></td></tr>
+<tr class="separator:a01033721e8f5d90483d65c904399cf96"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2dcd635c6bdbcfe517adca6e2bd5c408" id="r_a2dcd635c6bdbcfe517adca6e2bd5c408"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a2dcd635c6bdbcfe517adca6e2bd5c408">describe</a> () const override</td></tr>
+<tr class="memdesc:a2dcd635c6bdbcfe517adca6e2bd5c408"><td class="mdescLeft">&#160;</td><td class="mdescRight">Description expression e.g. "(A) AND (B)".  <br /></td></tr>
+<tr class="separator:a2dcd635c6bdbcfe517adca6e2bd5c408"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afffb4281569963183d7db3ed1568eb3a" id="r_afffb4281569963183d7db3ed1568eb3a"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#afffb4281569963183d7db3ed1568eb3a">numTriggers</a> () const override</td></tr>
+<tr class="memdesc:afffb4281569963183d7db3ed1568eb3a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of true evaluations since last reset.  <br /></td></tr>
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+<tr class="memdesc:addfd61f8cb234881f535fb8f4d618d74"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of false evaluations since last reset.  <br /></td></tr>
+<tr class="separator:addfd61f8cb234881f535fb8f4d618d74"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1trigger_1_1Trigger"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1trigger_1_1Trigger')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td></tr>
+<tr class="memitem:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger" id="r_a2c077ccbaf4de9f7068e50144391edda"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a> ()=default</td></tr>
+<tr class="memdesc:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for polymorphic use.  <br /></td></tr>
+<tr class="separator:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a99be74b126d50c15d21c0724d933af87" id="r_a99be74b126d50c15d21c0724d933af87"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a99be74b126d50c15d21c0724d933af87">m_A</a></td></tr>
+<tr class="separator:a99be74b126d50c15d21c0724d933af87"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af8ee88421d0dfd92de6df96d686ece38" id="r_af8ee88421d0dfd92de6df96d686ece38"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#af8ee88421d0dfd92de6df96d686ece38">m_B</a></td></tr>
+<tr class="separator:af8ee88421d0dfd92de6df96d686ece38"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a43e6a9c01b163ab92a0b413bfba52ef5" id="r_a43e6a9c01b163ab92a0b413bfba52ef5"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a43e6a9c01b163ab92a0b413bfba52ef5">m_hits</a> = 0</td></tr>
+<tr class="separator:a43e6a9c01b163ab92a0b413bfba52ef5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1714656e907edfcba2d354ff5d7c9ceb" id="r_a1714656e907edfcba2d354ff5d7c9ceb"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a1714656e907edfcba2d354ff5d7c9ceb">m_misses</a> = 0</td></tr>
+<tr class="separator:a1714656e907edfcba2d354ff5d7c9ceb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7f88c1139e1b05baed44614104d601b4" id="r_a7f88c1139e1b05baed44614104d601b4"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a7f88c1139e1b05baed44614104d601b4">m_updates</a> = 0</td></tr>
+<tr class="separator:a7f88c1139e1b05baed44614104d601b4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae3ff88ddb15d04e798fc03c6c941e312" id="r_ae3ff88ddb15d04e798fc03c6c941e312"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#ae3ff88ddb15d04e798fc03c6c941e312">m_resets</a> = 0</td></tr>
+<tr class="separator:ae3ff88ddb15d04e798fc03c6c941e312"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afd8d79e83f83473f0df64e96b63aa1f1" id="r_afd8d79e83f83473f0df64e96b63aa1f1"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#afd8d79e83f83473f0df64e96b63aa1f1">m_steps</a> = 0</td></tr>
+<tr class="separator:afd8d79e83f83473f0df64e96b63aa1f1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><div class="compoundTemplParams">template&lt;typename TriggerContextStruct&gt;<br />
+class gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</div><p>Logical conjunction of two triggers with short-circuit evaluation. </p>
+<p>check(ctx) returns A.check(ctx) &amp;&amp; B.check(ctx). The why(ctx) explanation short-circuits if A is false, avoiding evaluation of B. update(ctx) calls <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a62f7dbbcf0554caa68e3d778580b3c1d" title="Update both sub-triggers and increment update counter.">update()</a> on both A and B.</p>
+<p>Counters (mutable) are incremented inside const <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#aaefdfa86856f9f7839b6a7fdffa4a579" title="Evaluate A &amp;&amp; B; increments hit/miss counters.">check()</a>: m_hits on true; m_misses on false; m_updates on each <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a62f7dbbcf0554caa68e3d778580b3c1d" title="Update both sub-triggers and increment update counter.">update()</a>; m_resets on <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a2436d8643911ade907e03fb29531ceaa" title="Reset both sub-triggers and local counters.">reset()</a>.</p>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keyword">auto</span> t = <a class="code hl_class" href="classgridfire_1_1trigger_1_1AndTrigger.html">AndTrigger</a>(ctxA, ctxB);</div>
+<div class="line"><span class="keywordflow">if</span> (t.check(ctx)) { (void)ctx; }</div>
+<div class="ttc" id="aclassgridfire_1_1trigger_1_1AndTrigger_html"><div class="ttname"><a href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger</a></div><div class="ttdoc">Logical conjunction of two triggers with short-circuit evaluation.</div><div class="ttdef"><b>Definition</b> trigger_logical.h:39</div></div>
+</div><!-- fragment --> </dd></dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a969738baf0bda97664715937d4bc403e" name="a969738baf0bda97664715937d4bc403e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a969738baf0bda97664715937d4bc403e">&#9670;&#160;</a></span>AndTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::AndTrigger </td>
+          <td>(</td>
+          <td class="paramtype">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;&#160;</td>
+          <td class="paramname"><em>A</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;&#160;</td>
+          <td class="paramname"><em>B</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Construct AND from two triggers (ownership transferred). </p>
+
+</div>
+</div>
+<a id="a2ee18348ca65cc1aa56eb41292a39bc5" name="a2ee18348ca65cc1aa56eb41292a39bc5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2ee18348ca65cc1aa56eb41292a39bc5">&#9670;&#160;</a></span>~AndTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::~<a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">AndTrigger</a> </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="aaefdfa86856f9f7839b6a7fdffa4a579" name="aaefdfa86856f9f7839b6a7fdffa4a579"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaefdfa86856f9f7839b6a7fdffa4a579">&#9670;&#160;</a></span>check()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::check </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate A &amp;&amp; B; increments hit/miss counters. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a1579ffb1c841cda4e67990b42d400d88">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a2dcd635c6bdbcfe517adca6e2bd5c408" name="a2dcd635c6bdbcfe517adca6e2bd5c408"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2dcd635c6bdbcfe517adca6e2bd5c408">&#9670;&#160;</a></span>describe()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::describe </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Description expression e.g. "(A) AND (B)". </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a402cdd062e9479abbcca02e3d94e528f">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="ab78539e5cd88194ab9e98434793eae3f" name="ab78539e5cd88194ab9e98434793eae3f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab78539e5cd88194ab9e98434793eae3f">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Human-readable name. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a3e5b017147f22ca0733733cd39e334b7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="addfd61f8cb234881f535fb8f4d618d74" name="addfd61f8cb234881f535fb8f4d618d74"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#addfd61f8cb234881f535fb8f4d618d74">&#9670;&#160;</a></span>numMisses()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::numMisses </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of false evaluations since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a81848e5af844795d879b6d885a2701d7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="afffb4281569963183d7db3ed1568eb3a" name="afffb4281569963183d7db3ed1568eb3a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afffb4281569963183d7db3ed1568eb3a">&#9670;&#160;</a></span>numTriggers()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::numTriggers </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of true evaluations since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a2436d8643911ade907e03fb29531ceaa" name="a2436d8643911ade907e03fb29531ceaa"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2436d8643911ade907e03fb29531ceaa">&#9670;&#160;</a></span>reset()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::reset </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reset both sub-triggers and local counters. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#af652af761675736419b961b6946c728d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a8e743e8ebe71f9ded835177db6fad908" name="a8e743e8ebe71f9ded835177db6fad908"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8e743e8ebe71f9ded835177db6fad908">&#9670;&#160;</a></span>step()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::step </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>similar to update but intended to be run on every step not just those where the trigger triggered </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot used to update state. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4b7ffa4d8d31e2118a8e86172be51041">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a62f7dbbcf0554caa68e3d778580b3c1d" name="a62f7dbbcf0554caa68e3d778580b3c1d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a62f7dbbcf0554caa68e3d778580b3c1d">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::update </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Update both sub-triggers and increment update counter. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a048899795704f68668960454d118a6fc">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a01033721e8f5d90483d65c904399cf96" name="a01033721e8f5d90483d65c904399cf96"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a01033721e8f5d90483d65c904399cf96">&#9670;&#160;</a></span>why()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::why </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Structured explanation; short-circuits on A=false. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a9f020d828ca36a601b780566cc3377ea">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a99be74b126d50c15d21c0724d933af87" name="a99be74b126d50c15d21c0724d933af87"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a99be74b126d50c15d21c0724d933af87">&#9670;&#160;</a></span>m_A</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt;<a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt;TriggerContextStruct&gt; &gt; <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::m_A</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
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+</div><div class="memdoc">
+
+</div>
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+<a id="af8ee88421d0dfd92de6df96d686ece38" name="af8ee88421d0dfd92de6df96d686ece38"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af8ee88421d0dfd92de6df96d686ece38">&#9670;&#160;</a></span>m_B</h2>
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+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt;<a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt;TriggerContextStruct&gt; &gt; <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">gridfire::trigger::AndTrigger</a>&lt; TriggerContextStruct &gt;::m_B</td>
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+<h2 class="memtitle"><span class="permalink"><a href="#a43e6a9c01b163ab92a0b413bfba52ef5">&#9670;&#160;</a></span>m_hits</h2>
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+<h2 class="memtitle"><span class="permalink"><a href="#ae3ff88ddb15d04e798fc03c6c941e312">&#9670;&#160;</a></span>m_resets</h2>
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+<h2 class="memtitle"><span class="permalink"><a href="#a7f88c1139e1b05baed44614104d601b4">&#9670;&#160;</a></span>m_updates</h2>
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+<meta name="generator" content="Doxygen 1.9.8"/>
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+<title>GridFire: Member List</title>
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+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.9.8 -->
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt; Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a69fbb099f8d13d39602f58fa8aa8e7f2">check</a>(const TriggerContextStruct &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#aab88715f3c94437ca7f3fcb1698c69de">describe</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a69e5a3061926e1cd36fbd0a5285fa0a7">EveryNthTrigger</a>(std::unique_ptr&lt; Trigger&lt; TriggerContextStruct &gt; &gt; A, size_t N)</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a27f1fd8c8a93576f83a4f3320469c83a">m_A</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a80d6f82095c3b5fdbc46776e183cdb1f">m_counter</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a021c30d6db015bb88a70af348a5dd336">m_hits</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a0a5c2c5aedc779c1535d3839c6a6596e">m_misses</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a652ba8d1ac36b9713f426eedf2b1ead0">m_N</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a87b6e54f3a0536d20709d7e746ec575d">m_resets</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#acefe02899ade9aa595e04f3ec34f251a">m_steps</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#ab0a33f49be02d34b27f75edf75dbc06d">m_updates</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a4a834d24286f9204995bf78fb69f35dc">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#ae7776f4a526db3245e64a74a3b0172d3">numMisses</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a7e5568c9d7799b7f80ad0d3efe2cd143">numTriggers</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#abf218d255bde157540b51cd6a54f6eb1">reset</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a26d0aca39087a1f69e96e0701ca83f81">step</a>(const TriggerContextStruct &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a0dd783afab7ef6005f0241f9de7b31f6">update</a>(const TriggerContextStruct &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a3bf0d69122f801deca4b62db47262d9b">why</a>(const TriggerContextStruct &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#ae28e54330d575d9d1d3d8ebc6e7a6f75">~EveryNthTrigger</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/classgridfire_1_1trigger_1_1EveryNthTrigger.html b/docs/html/classgridfire_1_1trigger_1_1EveryNthTrigger.html
new file mode 100644
index 00000000..35513d73
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@@ -0,0 +1,767 @@
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+<title>GridFire: gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt; Class Template Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
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+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.9.8 -->
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+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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+});
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+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
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+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
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+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
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+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1trigger_1_1EveryNthTrigger-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt; Class Template Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Pass-through trigger that fires every Nth time its child trigger is true.  
+ <a href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#details">More...</a></p>
+
+<p><code>#include &lt;trigger_logical.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1trigger_1_1EveryNthTrigger__inherit__graph.svg" width="247" height="256"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1trigger_1_1EveryNthTrigger__coll__graph.svg" width="100%" height="408"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a69e5a3061926e1cd36fbd0a5285fa0a7" id="r_a69e5a3061926e1cd36fbd0a5285fa0a7"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a69e5a3061926e1cd36fbd0a5285fa0a7">EveryNthTrigger</a> (std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt; A, size_t N)</td></tr>
+<tr class="separator:a69e5a3061926e1cd36fbd0a5285fa0a7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae28e54330d575d9d1d3d8ebc6e7a6f75" id="r_ae28e54330d575d9d1d3d8ebc6e7a6f75"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#ae28e54330d575d9d1d3d8ebc6e7a6f75">~EveryNthTrigger</a> () override=default</td></tr>
+<tr class="separator:ae28e54330d575d9d1d3d8ebc6e7a6f75"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a69fbb099f8d13d39602f58fa8aa8e7f2" id="r_a69fbb099f8d13d39602f58fa8aa8e7f2"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a69fbb099f8d13d39602f58fa8aa8e7f2">check</a> (const TriggerContextStruct &amp;ctx) const override</td></tr>
+<tr class="memdesc:a69fbb099f8d13d39602f58fa8aa8e7f2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the trigger condition against the provided context.  <br /></td></tr>
+<tr class="separator:a69fbb099f8d13d39602f58fa8aa8e7f2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0dd783afab7ef6005f0241f9de7b31f6" id="r_a0dd783afab7ef6005f0241f9de7b31f6"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a0dd783afab7ef6005f0241f9de7b31f6">update</a> (const TriggerContextStruct &amp;ctx) override</td></tr>
+<tr class="memdesc:a0dd783afab7ef6005f0241f9de7b31f6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update any internal state with the given context (e.g., counters, windows).  <br /></td></tr>
+<tr class="separator:a0dd783afab7ef6005f0241f9de7b31f6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a26d0aca39087a1f69e96e0701ca83f81" id="r_a26d0aca39087a1f69e96e0701ca83f81"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a26d0aca39087a1f69e96e0701ca83f81">step</a> (const TriggerContextStruct &amp;ctx) override</td></tr>
+<tr class="memdesc:a26d0aca39087a1f69e96e0701ca83f81"><td class="mdescLeft">&#160;</td><td class="mdescRight">similar to update but intended to be run on every step not just those where the trigger triggered  <br /></td></tr>
+<tr class="separator:a26d0aca39087a1f69e96e0701ca83f81"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abf218d255bde157540b51cd6a54f6eb1" id="r_abf218d255bde157540b51cd6a54f6eb1"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#abf218d255bde157540b51cd6a54f6eb1">reset</a> () override</td></tr>
+<tr class="memdesc:abf218d255bde157540b51cd6a54f6eb1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset internal state and diagnostics counters.  <br /></td></tr>
+<tr class="separator:abf218d255bde157540b51cd6a54f6eb1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4a834d24286f9204995bf78fb69f35dc" id="r_a4a834d24286f9204995bf78fb69f35dc"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a4a834d24286f9204995bf78fb69f35dc">name</a> () const override</td></tr>
+<tr class="memdesc:a4a834d24286f9204995bf78fb69f35dc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Short, stable name for this trigger (suitable for logs/UI).  <br /></td></tr>
+<tr class="separator:a4a834d24286f9204995bf78fb69f35dc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3bf0d69122f801deca4b62db47262d9b" id="r_a3bf0d69122f801deca4b62db47262d9b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a3bf0d69122f801deca4b62db47262d9b">why</a> (const TriggerContextStruct &amp;ctx) const override</td></tr>
+<tr class="memdesc:a3bf0d69122f801deca4b62db47262d9b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Explain why the last evaluation would be true/false in a structured way.  <br /></td></tr>
+<tr class="separator:a3bf0d69122f801deca4b62db47262d9b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aab88715f3c94437ca7f3fcb1698c69de" id="r_aab88715f3c94437ca7f3fcb1698c69de"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#aab88715f3c94437ca7f3fcb1698c69de">describe</a> () const override</td></tr>
+<tr class="memdesc:aab88715f3c94437ca7f3fcb1698c69de"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable description of this trigger's logic.  <br /></td></tr>
+<tr class="separator:aab88715f3c94437ca7f3fcb1698c69de"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7e5568c9d7799b7f80ad0d3efe2cd143" id="r_a7e5568c9d7799b7f80ad0d3efe2cd143"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a7e5568c9d7799b7f80ad0d3efe2cd143">numTriggers</a> () const override</td></tr>
+<tr class="memdesc:a7e5568c9d7799b7f80ad0d3efe2cd143"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to true since last reset.  <br /></td></tr>
+<tr class="separator:a7e5568c9d7799b7f80ad0d3efe2cd143"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae7776f4a526db3245e64a74a3b0172d3" id="r_ae7776f4a526db3245e64a74a3b0172d3"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#ae7776f4a526db3245e64a74a3b0172d3">numMisses</a> () const override</td></tr>
+<tr class="memdesc:ae7776f4a526db3245e64a74a3b0172d3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to false since last reset.  <br /></td></tr>
+<tr class="separator:ae7776f4a526db3245e64a74a3b0172d3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1trigger_1_1Trigger"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1trigger_1_1Trigger')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td></tr>
+<tr class="memitem:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger" id="r_a2c077ccbaf4de9f7068e50144391edda"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a> ()=default</td></tr>
+<tr class="memdesc:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for polymorphic use.  <br /></td></tr>
+<tr class="separator:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a27f1fd8c8a93576f83a4f3320469c83a" id="r_a27f1fd8c8a93576f83a4f3320469c83a"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a27f1fd8c8a93576f83a4f3320469c83a">m_A</a></td></tr>
+<tr class="separator:a27f1fd8c8a93576f83a4f3320469c83a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a652ba8d1ac36b9713f426eedf2b1ead0" id="r_a652ba8d1ac36b9713f426eedf2b1ead0"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a652ba8d1ac36b9713f426eedf2b1ead0">m_N</a></td></tr>
+<tr class="separator:a652ba8d1ac36b9713f426eedf2b1ead0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a80d6f82095c3b5fdbc46776e183cdb1f" id="r_a80d6f82095c3b5fdbc46776e183cdb1f"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a80d6f82095c3b5fdbc46776e183cdb1f">m_counter</a> = 0</td></tr>
+<tr class="separator:a80d6f82095c3b5fdbc46776e183cdb1f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a021c30d6db015bb88a70af348a5dd336" id="r_a021c30d6db015bb88a70af348a5dd336"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a021c30d6db015bb88a70af348a5dd336">m_hits</a> = 0</td></tr>
+<tr class="separator:a021c30d6db015bb88a70af348a5dd336"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0a5c2c5aedc779c1535d3839c6a6596e" id="r_a0a5c2c5aedc779c1535d3839c6a6596e"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a0a5c2c5aedc779c1535d3839c6a6596e">m_misses</a> = 0</td></tr>
+<tr class="separator:a0a5c2c5aedc779c1535d3839c6a6596e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab0a33f49be02d34b27f75edf75dbc06d" id="r_ab0a33f49be02d34b27f75edf75dbc06d"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#ab0a33f49be02d34b27f75edf75dbc06d">m_updates</a> = 0</td></tr>
+<tr class="separator:ab0a33f49be02d34b27f75edf75dbc06d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a87b6e54f3a0536d20709d7e746ec575d" id="r_a87b6e54f3a0536d20709d7e746ec575d"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a87b6e54f3a0536d20709d7e746ec575d">m_resets</a> = 0</td></tr>
+<tr class="separator:a87b6e54f3a0536d20709d7e746ec575d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acefe02899ade9aa595e04f3ec34f251a" id="r_acefe02899ade9aa595e04f3ec34f251a"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#acefe02899ade9aa595e04f3ec34f251a">m_steps</a> = 0</td></tr>
+<tr class="separator:acefe02899ade9aa595e04f3ec34f251a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><div class="compoundTemplParams">template&lt;typename TriggerContextStruct&gt;<br />
+class gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</div><p>Pass-through trigger that fires every Nth time its child trigger is true. </p>
+<p>On update(ctx), increments an internal counter when A.check(ctx) is true. check(ctx) returns true only when A.check(ctx) is true and the internal counter is a multiple of N.</p>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::invalid_argument</td><td>When constructed with N==0. </td></tr>
+  </table>
+  </dd>
+</dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a69e5a3061926e1cd36fbd0a5285fa0a7" name="a69e5a3061926e1cd36fbd0a5285fa0a7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a69e5a3061926e1cd36fbd0a5285fa0a7">&#9670;&#160;</a></span>EveryNthTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::EveryNthTrigger </td>
+          <td>(</td>
+          <td class="paramtype">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;&#160;</td>
+          <td class="paramname"><em>A</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>N</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae28e54330d575d9d1d3d8ebc6e7a6f75" name="ae28e54330d575d9d1d3d8ebc6e7a6f75"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae28e54330d575d9d1d3d8ebc6e7a6f75">&#9670;&#160;</a></span>~EveryNthTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::~<a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">EveryNthTrigger</a> </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a69fbb099f8d13d39602f58fa8aa8e7f2" name="a69fbb099f8d13d39602f58fa8aa8e7f2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a69fbb099f8d13d39602f58fa8aa8e7f2">&#9670;&#160;</a></span>check()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::check </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate the trigger condition against the provided context. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot (immutable view) used to evaluate the condition. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if the condition is satisfied; false otherwise. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a1579ffb1c841cda4e67990b42d400d88">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="aab88715f3c94437ca7f3fcb1698c69de" name="aab88715f3c94437ca7f3fcb1698c69de"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aab88715f3c94437ca7f3fcb1698c69de">&#9670;&#160;</a></span>describe()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::describe </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Human-readable description of this trigger's logic. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a402cdd062e9479abbcca02e3d94e528f">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a4a834d24286f9204995bf78fb69f35dc" name="a4a834d24286f9204995bf78fb69f35dc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4a834d24286f9204995bf78fb69f35dc">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Short, stable name for this trigger (suitable for logs/UI). </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a3e5b017147f22ca0733733cd39e334b7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="ae7776f4a526db3245e64a74a3b0172d3" name="ae7776f4a526db3245e64a74a3b0172d3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae7776f4a526db3245e64a74a3b0172d3">&#9670;&#160;</a></span>numMisses()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::numMisses </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Total number of times this trigger evaluated to false since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a81848e5af844795d879b6d885a2701d7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a7e5568c9d7799b7f80ad0d3efe2cd143" name="a7e5568c9d7799b7f80ad0d3efe2cd143"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7e5568c9d7799b7f80ad0d3efe2cd143">&#9670;&#160;</a></span>numTriggers()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::numTriggers </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Total number of times this trigger evaluated to true since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="abf218d255bde157540b51cd6a54f6eb1" name="abf218d255bde157540b51cd6a54f6eb1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abf218d255bde157540b51cd6a54f6eb1">&#9670;&#160;</a></span>reset()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::reset </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reset internal state and diagnostics counters. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#af652af761675736419b961b6946c728d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a26d0aca39087a1f69e96e0701ca83f81" name="a26d0aca39087a1f69e96e0701ca83f81"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a26d0aca39087a1f69e96e0701ca83f81">&#9670;&#160;</a></span>step()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::step </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>similar to update but intended to be run on every step not just those where the trigger triggered </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot used to update state. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4b7ffa4d8d31e2118a8e86172be51041">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a0dd783afab7ef6005f0241f9de7b31f6" name="a0dd783afab7ef6005f0241f9de7b31f6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0dd783afab7ef6005f0241f9de7b31f6">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::update </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Update any internal state with the given context (e.g., counters, windows). </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot used to update state. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a048899795704f68668960454d118a6fc">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a3bf0d69122f801deca4b62db47262d9b" name="a3bf0d69122f801deca4b62db47262d9b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3bf0d69122f801deca4b62db47262d9b">&#9670;&#160;</a></span>why()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::why </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Explain why the last evaluation would be true/false in a structured way. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot for the explanation. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> tree with a boolean value and per-cause details. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a9f020d828ca36a601b780566cc3377ea">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a27f1fd8c8a93576f83a4f3320469c83a" name="a27f1fd8c8a93576f83a4f3320469c83a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a27f1fd8c8a93576f83a4f3320469c83a">&#9670;&#160;</a></span>m_A</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt;<a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt;TriggerContextStruct&gt; &gt; <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::m_A</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a80d6f82095c3b5fdbc46776e183cdb1f" name="a80d6f82095c3b5fdbc46776e183cdb1f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a80d6f82095c3b5fdbc46776e183cdb1f">&#9670;&#160;</a></span>m_counter</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::m_counter = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a021c30d6db015bb88a70af348a5dd336" name="a021c30d6db015bb88a70af348a5dd336"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a021c30d6db015bb88a70af348a5dd336">&#9670;&#160;</a></span>m_hits</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::m_hits = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a0a5c2c5aedc779c1535d3839c6a6596e" name="a0a5c2c5aedc779c1535d3839c6a6596e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0a5c2c5aedc779c1535d3839c6a6596e">&#9670;&#160;</a></span>m_misses</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::m_misses = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a652ba8d1ac36b9713f426eedf2b1ead0" name="a652ba8d1ac36b9713f426eedf2b1ead0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a652ba8d1ac36b9713f426eedf2b1ead0">&#9670;&#160;</a></span>m_N</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::m_N</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a87b6e54f3a0536d20709d7e746ec575d" name="a87b6e54f3a0536d20709d7e746ec575d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a87b6e54f3a0536d20709d7e746ec575d">&#9670;&#160;</a></span>m_resets</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::m_resets = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="acefe02899ade9aa595e04f3ec34f251a" name="acefe02899ade9aa595e04f3ec34f251a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acefe02899ade9aa595e04f3ec34f251a">&#9670;&#160;</a></span>m_steps</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::m_steps = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab0a33f49be02d34b27f75edf75dbc06d" name="ab0a33f49be02d34b27f75edf75dbc06d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab0a33f49be02d34b27f75edf75dbc06d">&#9670;&#160;</a></span>m_updates</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">gridfire::trigger::EveryNthTrigger</a>&lt; TriggerContextStruct &gt;::m_updates = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/trigger/<a class="el" href="trigger__logical_8h.html">trigger_logical.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger.html">trigger</a></li><li class="navelem"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">EveryNthTrigger</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
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new file mode 100644
index 00000000..c4fc58cf
--- /dev/null
+++ b/docs/html/classgridfire_1_1trigger_1_1EveryNthTrigger.js
@@ -0,0 +1,22 @@
+var classgridfire_1_1trigger_1_1EveryNthTrigger =
+[
+    [ "EveryNthTrigger", "classgridfire_1_1trigger_1_1EveryNthTrigger.html#a69e5a3061926e1cd36fbd0a5285fa0a7", null ],
+    [ "~EveryNthTrigger", "classgridfire_1_1trigger_1_1EveryNthTrigger.html#ae28e54330d575d9d1d3d8ebc6e7a6f75", null ],
+    [ "check", "classgridfire_1_1trigger_1_1EveryNthTrigger.html#a69fbb099f8d13d39602f58fa8aa8e7f2", null ],
+    [ "describe", "classgridfire_1_1trigger_1_1EveryNthTrigger.html#aab88715f3c94437ca7f3fcb1698c69de", null ],
+    [ "name", "classgridfire_1_1trigger_1_1EveryNthTrigger.html#a4a834d24286f9204995bf78fb69f35dc", null ],
+    [ "numMisses", "classgridfire_1_1trigger_1_1EveryNthTrigger.html#ae7776f4a526db3245e64a74a3b0172d3", null ],
+    [ "numTriggers", "classgridfire_1_1trigger_1_1EveryNthTrigger.html#a7e5568c9d7799b7f80ad0d3efe2cd143", null ],
+    [ "reset", "classgridfire_1_1trigger_1_1EveryNthTrigger.html#abf218d255bde157540b51cd6a54f6eb1", null ],
+    [ "step", "classgridfire_1_1trigger_1_1EveryNthTrigger.html#a26d0aca39087a1f69e96e0701ca83f81", null ],
+    [ "update", "classgridfire_1_1trigger_1_1EveryNthTrigger.html#a0dd783afab7ef6005f0241f9de7b31f6", null ],
+    [ "why", "classgridfire_1_1trigger_1_1EveryNthTrigger.html#a3bf0d69122f801deca4b62db47262d9b", null ],
+    [ "m_A", "classgridfire_1_1trigger_1_1EveryNthTrigger.html#a27f1fd8c8a93576f83a4f3320469c83a", null ],
+    [ "m_counter", "classgridfire_1_1trigger_1_1EveryNthTrigger.html#a80d6f82095c3b5fdbc46776e183cdb1f", null ],
+    [ "m_hits", "classgridfire_1_1trigger_1_1EveryNthTrigger.html#a021c30d6db015bb88a70af348a5dd336", null ],
+    [ "m_misses", "classgridfire_1_1trigger_1_1EveryNthTrigger.html#a0a5c2c5aedc779c1535d3839c6a6596e", null ],
+    [ "m_N", "classgridfire_1_1trigger_1_1EveryNthTrigger.html#a652ba8d1ac36b9713f426eedf2b1ead0", null ],
+    [ "m_resets", "classgridfire_1_1trigger_1_1EveryNthTrigger.html#a87b6e54f3a0536d20709d7e746ec575d", null ],
+    [ "m_steps", "classgridfire_1_1trigger_1_1EveryNthTrigger.html#acefe02899ade9aa595e04f3ec34f251a", null ],
+    [ "m_updates", "classgridfire_1_1trigger_1_1EveryNthTrigger.html#ab0a33f49be02d34b27f75edf75dbc06d", null ]
+];
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new file mode 100644
index 00000000..16c60f75
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+  <div class="headertitle"><div class="title">gridfire::trigger::LogicalTrigger&lt; TriggerContextStruct &gt; Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1trigger_1_1LogicalTrigger.html">gridfire::trigger::LogicalTrigger&lt; TriggerContextStruct &gt;</a>, including all inherited members.</p>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a1579ffb1c841cda4e67990b42d400d88">check</a>(const TriggerContextStruct &amp;ctx) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a402cdd062e9479abbcca02e3d94e528f">describe</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a3e5b017147f22ca0733733cd39e334b7">name</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a81848e5af844795d879b6d885a2701d7">numMisses</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">numTriggers</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#af652af761675736419b961b6946c728d">reset</a>()=0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4b7ffa4d8d31e2118a8e86172be51041">step</a>(const TriggerContextStruct &amp;ctx)=0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a048899795704f68668960454d118a6fc">update</a>(const TriggerContextStruct &amp;ctx)=0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a9f020d828ca36a601b780566cc3377ea">why</a>(const TriggerContextStruct &amp;ctx) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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diff --git a/docs/html/classgridfire_1_1trigger_1_1LogicalTrigger.html b/docs/html/classgridfire_1_1trigger_1_1LogicalTrigger.html
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="SRStatus" id="NoMatches">No Matches</div>
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+
+<div class="header">
+  <div class="summary">
+<a href="classgridfire_1_1trigger_1_1LogicalTrigger-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::LogicalTrigger&lt; TriggerContextStruct &gt; Class Template Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;trigger_logical.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::trigger::LogicalTrigger&lt; TriggerContextStruct &gt;:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1trigger_1_1LogicalTrigger__inherit__graph.svg" width="100%" height="516"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::trigger::LogicalTrigger&lt; TriggerContextStruct &gt;:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1trigger_1_1LogicalTrigger__coll__graph.svg" width="240" height="154"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
+Additional Inherited Members</h2></td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1trigger_1_1Trigger"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1trigger_1_1Trigger')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td></tr>
+<tr class="memitem:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger" id="r_a2c077ccbaf4de9f7068e50144391edda"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a> ()=default</td></tr>
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt; Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#ae453a72df20fdd416443ef7867f86b92">check</a>(const TriggerContextStruct &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#ad8166350329db3e1f50954afbb311a35">describe</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a0d7818e59a8d86e86053bcb6d5d7d2b8">m_A</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a86404f57e0e0683fc56e0e49321e5e3b">m_hits</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#aa1253080cd57cdf0be6780773ce6c73c">m_misses</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#adb9c36fa46a30c28e68c59a7d3bd825d">m_resets</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a2e1e78f3bf9fe0edcb9094c778826629">m_steps</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#ae4830ed152643770b0888b040475b000">m_updates</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#acc3bd2938f7746997fb1d255681d8b20">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a4828599aae5ff37f4c82e51fe192bed3">NotTrigger</a>(std::unique_ptr&lt; Trigger&lt; TriggerContextStruct &gt; &gt; A)</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a2f9b0d6a6ac54f6371c5a208c06826ea">numMisses</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#ae2d27d72af9e1fbf711a58e4583b43a3">numTriggers</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#afe337517b77e5433d92ded3a64565141">reset</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a5096cb7e70ea357f28e1b9fc8301c793">step</a>(const TriggerContextStruct &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a846432abf33c7602af0fbb5475c0ad32">update</a>(const TriggerContextStruct &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#abfb3eb7befba646ce9f11f36a63750ae">why</a>(const TriggerContextStruct &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#afa4173490171d1251cc1757b92841755">~NotTrigger</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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new file mode 100644
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+<title>GridFire: gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt; Class Template Reference</title>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1trigger_1_1NotTrigger-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt; Class Template Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Logical negation of a trigger.  
+ <a href="classgridfire_1_1trigger_1_1NotTrigger.html#details">More...</a></p>
+
+<p><code>#include &lt;trigger_logical.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1trigger_1_1NotTrigger__inherit__graph.svg" width="240" height="256"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1trigger_1_1NotTrigger__coll__graph.svg" width="100%" height="408"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a4828599aae5ff37f4c82e51fe192bed3" id="r_a4828599aae5ff37f4c82e51fe192bed3"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a4828599aae5ff37f4c82e51fe192bed3">NotTrigger</a> (std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt; A)</td></tr>
+<tr class="separator:a4828599aae5ff37f4c82e51fe192bed3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afa4173490171d1251cc1757b92841755" id="r_afa4173490171d1251cc1757b92841755"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#afa4173490171d1251cc1757b92841755">~NotTrigger</a> () override=default</td></tr>
+<tr class="separator:afa4173490171d1251cc1757b92841755"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae453a72df20fdd416443ef7867f86b92" id="r_ae453a72df20fdd416443ef7867f86b92"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#ae453a72df20fdd416443ef7867f86b92">check</a> (const TriggerContextStruct &amp;ctx) const override</td></tr>
+<tr class="memdesc:ae453a72df20fdd416443ef7867f86b92"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the trigger condition against the provided context.  <br /></td></tr>
+<tr class="separator:ae453a72df20fdd416443ef7867f86b92"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a846432abf33c7602af0fbb5475c0ad32" id="r_a846432abf33c7602af0fbb5475c0ad32"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a846432abf33c7602af0fbb5475c0ad32">update</a> (const TriggerContextStruct &amp;ctx) override</td></tr>
+<tr class="memdesc:a846432abf33c7602af0fbb5475c0ad32"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update any internal state with the given context (e.g., counters, windows).  <br /></td></tr>
+<tr class="separator:a846432abf33c7602af0fbb5475c0ad32"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5096cb7e70ea357f28e1b9fc8301c793" id="r_a5096cb7e70ea357f28e1b9fc8301c793"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a5096cb7e70ea357f28e1b9fc8301c793">step</a> (const TriggerContextStruct &amp;ctx) override</td></tr>
+<tr class="memdesc:a5096cb7e70ea357f28e1b9fc8301c793"><td class="mdescLeft">&#160;</td><td class="mdescRight">similar to update but intended to be run on every step not just those where the trigger triggered  <br /></td></tr>
+<tr class="separator:a5096cb7e70ea357f28e1b9fc8301c793"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afe337517b77e5433d92ded3a64565141" id="r_afe337517b77e5433d92ded3a64565141"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#afe337517b77e5433d92ded3a64565141">reset</a> () override</td></tr>
+<tr class="memdesc:afe337517b77e5433d92ded3a64565141"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset internal state and diagnostics counters.  <br /></td></tr>
+<tr class="separator:afe337517b77e5433d92ded3a64565141"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acc3bd2938f7746997fb1d255681d8b20" id="r_acc3bd2938f7746997fb1d255681d8b20"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#acc3bd2938f7746997fb1d255681d8b20">name</a> () const override</td></tr>
+<tr class="memdesc:acc3bd2938f7746997fb1d255681d8b20"><td class="mdescLeft">&#160;</td><td class="mdescRight">Short, stable name for this trigger (suitable for logs/UI).  <br /></td></tr>
+<tr class="separator:acc3bd2938f7746997fb1d255681d8b20"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abfb3eb7befba646ce9f11f36a63750ae" id="r_abfb3eb7befba646ce9f11f36a63750ae"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#abfb3eb7befba646ce9f11f36a63750ae">why</a> (const TriggerContextStruct &amp;ctx) const override</td></tr>
+<tr class="memdesc:abfb3eb7befba646ce9f11f36a63750ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Explain why the last evaluation would be true/false in a structured way.  <br /></td></tr>
+<tr class="separator:abfb3eb7befba646ce9f11f36a63750ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad8166350329db3e1f50954afbb311a35" id="r_ad8166350329db3e1f50954afbb311a35"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#ad8166350329db3e1f50954afbb311a35">describe</a> () const override</td></tr>
+<tr class="memdesc:ad8166350329db3e1f50954afbb311a35"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable description of this trigger's logic.  <br /></td></tr>
+<tr class="separator:ad8166350329db3e1f50954afbb311a35"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae2d27d72af9e1fbf711a58e4583b43a3" id="r_ae2d27d72af9e1fbf711a58e4583b43a3"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#ae2d27d72af9e1fbf711a58e4583b43a3">numTriggers</a> () const override</td></tr>
+<tr class="memdesc:ae2d27d72af9e1fbf711a58e4583b43a3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to true since last reset.  <br /></td></tr>
+<tr class="separator:ae2d27d72af9e1fbf711a58e4583b43a3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2f9b0d6a6ac54f6371c5a208c06826ea" id="r_a2f9b0d6a6ac54f6371c5a208c06826ea"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a2f9b0d6a6ac54f6371c5a208c06826ea">numMisses</a> () const override</td></tr>
+<tr class="memdesc:a2f9b0d6a6ac54f6371c5a208c06826ea"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to false since last reset.  <br /></td></tr>
+<tr class="separator:a2f9b0d6a6ac54f6371c5a208c06826ea"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1trigger_1_1Trigger"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1trigger_1_1Trigger')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td></tr>
+<tr class="memitem:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger" id="r_a2c077ccbaf4de9f7068e50144391edda"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a> ()=default</td></tr>
+<tr class="memdesc:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for polymorphic use.  <br /></td></tr>
+<tr class="separator:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a0d7818e59a8d86e86053bcb6d5d7d2b8" id="r_a0d7818e59a8d86e86053bcb6d5d7d2b8"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a0d7818e59a8d86e86053bcb6d5d7d2b8">m_A</a></td></tr>
+<tr class="separator:a0d7818e59a8d86e86053bcb6d5d7d2b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a86404f57e0e0683fc56e0e49321e5e3b" id="r_a86404f57e0e0683fc56e0e49321e5e3b"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a86404f57e0e0683fc56e0e49321e5e3b">m_hits</a> = 0</td></tr>
+<tr class="separator:a86404f57e0e0683fc56e0e49321e5e3b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa1253080cd57cdf0be6780773ce6c73c" id="r_aa1253080cd57cdf0be6780773ce6c73c"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#aa1253080cd57cdf0be6780773ce6c73c">m_misses</a> = 0</td></tr>
+<tr class="separator:aa1253080cd57cdf0be6780773ce6c73c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae4830ed152643770b0888b040475b000" id="r_ae4830ed152643770b0888b040475b000"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#ae4830ed152643770b0888b040475b000">m_updates</a> = 0</td></tr>
+<tr class="separator:ae4830ed152643770b0888b040475b000"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adb9c36fa46a30c28e68c59a7d3bd825d" id="r_adb9c36fa46a30c28e68c59a7d3bd825d"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#adb9c36fa46a30c28e68c59a7d3bd825d">m_resets</a> = 0</td></tr>
+<tr class="separator:adb9c36fa46a30c28e68c59a7d3bd825d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2e1e78f3bf9fe0edcb9094c778826629" id="r_a2e1e78f3bf9fe0edcb9094c778826629"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a2e1e78f3bf9fe0edcb9094c778826629">m_steps</a> = 0</td></tr>
+<tr class="separator:a2e1e78f3bf9fe0edcb9094c778826629"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><div class="compoundTemplParams">template&lt;typename TriggerContextStruct&gt;<br />
+class gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</div><p>Logical negation of a trigger. </p>
+<p>check(ctx) returns !A.check(ctx). why(ctx) explains the inverted condition. Counter semantics match the other logical triggers. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a4828599aae5ff37f4c82e51fe192bed3" name="a4828599aae5ff37f4c82e51fe192bed3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4828599aae5ff37f4c82e51fe192bed3">&#9670;&#160;</a></span>NotTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::NotTrigger </td>
+          <td>(</td>
+          <td class="paramtype">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;&#160;</td>
+          <td class="paramname"><em>A</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="afa4173490171d1251cc1757b92841755" name="afa4173490171d1251cc1757b92841755"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afa4173490171d1251cc1757b92841755">&#9670;&#160;</a></span>~NotTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::~<a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">NotTrigger</a> </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ae453a72df20fdd416443ef7867f86b92" name="ae453a72df20fdd416443ef7867f86b92"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae453a72df20fdd416443ef7867f86b92">&#9670;&#160;</a></span>check()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::check </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate the trigger condition against the provided context. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot (immutable view) used to evaluate the condition. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if the condition is satisfied; false otherwise. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a1579ffb1c841cda4e67990b42d400d88">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="ad8166350329db3e1f50954afbb311a35" name="ad8166350329db3e1f50954afbb311a35"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad8166350329db3e1f50954afbb311a35">&#9670;&#160;</a></span>describe()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::describe </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Human-readable description of this trigger's logic. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a402cdd062e9479abbcca02e3d94e528f">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="acc3bd2938f7746997fb1d255681d8b20" name="acc3bd2938f7746997fb1d255681d8b20"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acc3bd2938f7746997fb1d255681d8b20">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Short, stable name for this trigger (suitable for logs/UI). </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a3e5b017147f22ca0733733cd39e334b7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a2f9b0d6a6ac54f6371c5a208c06826ea" name="a2f9b0d6a6ac54f6371c5a208c06826ea"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2f9b0d6a6ac54f6371c5a208c06826ea">&#9670;&#160;</a></span>numMisses()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::numMisses </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Total number of times this trigger evaluated to false since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a81848e5af844795d879b6d885a2701d7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="ae2d27d72af9e1fbf711a58e4583b43a3" name="ae2d27d72af9e1fbf711a58e4583b43a3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae2d27d72af9e1fbf711a58e4583b43a3">&#9670;&#160;</a></span>numTriggers()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::numTriggers </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Total number of times this trigger evaluated to true since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="afe337517b77e5433d92ded3a64565141" name="afe337517b77e5433d92ded3a64565141"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afe337517b77e5433d92ded3a64565141">&#9670;&#160;</a></span>reset()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::reset </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reset internal state and diagnostics counters. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#af652af761675736419b961b6946c728d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a5096cb7e70ea357f28e1b9fc8301c793" name="a5096cb7e70ea357f28e1b9fc8301c793"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5096cb7e70ea357f28e1b9fc8301c793">&#9670;&#160;</a></span>step()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::step </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>similar to update but intended to be run on every step not just those where the trigger triggered </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot used to update state. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4b7ffa4d8d31e2118a8e86172be51041">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a846432abf33c7602af0fbb5475c0ad32" name="a846432abf33c7602af0fbb5475c0ad32"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a846432abf33c7602af0fbb5475c0ad32">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::update </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Update any internal state with the given context (e.g., counters, windows). </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot used to update state. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a048899795704f68668960454d118a6fc">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="abfb3eb7befba646ce9f11f36a63750ae" name="abfb3eb7befba646ce9f11f36a63750ae"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abfb3eb7befba646ce9f11f36a63750ae">&#9670;&#160;</a></span>why()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::why </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Explain why the last evaluation would be true/false in a structured way. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot for the explanation. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> tree with a boolean value and per-cause details. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a9f020d828ca36a601b780566cc3377ea">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a0d7818e59a8d86e86053bcb6d5d7d2b8" name="a0d7818e59a8d86e86053bcb6d5d7d2b8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0d7818e59a8d86e86053bcb6d5d7d2b8">&#9670;&#160;</a></span>m_A</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt;<a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt;TriggerContextStruct&gt; &gt; <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::m_A</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
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+</div><div class="memdoc">
+
+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#a86404f57e0e0683fc56e0e49321e5e3b">&#9670;&#160;</a></span>m_hits</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
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+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::m_hits = 0</td>
+        </tr>
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+<h2 class="memtitle"><span class="permalink"><a href="#aa1253080cd57cdf0be6780773ce6c73c">&#9670;&#160;</a></span>m_misses</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
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+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">gridfire::trigger::NotTrigger</a>&lt; TriggerContextStruct &gt;::m_misses = 0</td>
+        </tr>
+      </table>
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+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
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+</div><div class="memdoc">
+
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+<a id="adb9c36fa46a30c28e68c59a7d3bd825d" name="adb9c36fa46a30c28e68c59a7d3bd825d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adb9c36fa46a30c28e68c59a7d3bd825d">&#9670;&#160;</a></span>m_resets</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
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+        <tr>
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+  <td class="mlabels-right">
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+<h2 class="memtitle"><span class="permalink"><a href="#a2e1e78f3bf9fe0edcb9094c778826629">&#9670;&#160;</a></span>m_steps</h2>
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+<h2 class="memtitle"><span class="permalink"><a href="#ae4830ed152643770b0888b040475b000">&#9670;&#160;</a></span>m_updates</h2>
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+  <div class="headertitle"><div class="title">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt; Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#ac8be54d91e77ed16ae3cca2417d82e0a">check</a>(const TriggerContextStruct &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#accb56630df2f57400467d315c61dede6">describe</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a6da04b5b15371f7087be03bb337dbdd6">m_A</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a30dec370b61a5f0562956394b89e8f89">m_B</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a35d519d5266c68b696b779b275574ebf">m_hits</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b">m_misses</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#adc6f560d9199455ba98d85eadfe02847">m_resets</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a596db4a92ebf789cea1c431d3d2220c7">m_steps</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#af595a5daab0f5b3ffc450c6de6737517">m_updates</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a062af4f567dc48c088f1fcfb64cc79ec">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a0b3a7f45604dbb27e832d9559dd20997">numMisses</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#afc7d3eae8306ee383d76997ac3803327">numTriggers</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#aaf4f8a090bdd10eeba0b7849fa8ed888">OrTrigger</a>(std::unique_ptr&lt; Trigger&lt; TriggerContextStruct &gt; &gt; A, std::unique_ptr&lt; Trigger&lt; TriggerContextStruct &gt; &gt; B)</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#ab42043e55c81bac5d3f981bc139579de">reset</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a95a801aafb5aaa9a22566ebf722a1150">step</a>(const TriggerContextStruct &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a775dac97d109c5fcd5c0287ca98f308c">update</a>(const TriggerContextStruct &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a7bca0da16353f4b04a2f40fb29c07922">why</a>(const TriggerContextStruct &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#afe30f95de39c1375557d032b8a8111f9">~OrTrigger</a>() override=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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diff --git a/docs/html/classgridfire_1_1trigger_1_1OrTrigger.html b/docs/html/classgridfire_1_1trigger_1_1OrTrigger.html
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+<title>GridFire: gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt; Class Template Reference</title>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1trigger_1_1OrTrigger-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt; Class Template Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Logical disjunction of two triggers with short-circuit evaluation.  
+ <a href="classgridfire_1_1trigger_1_1OrTrigger.html#details">More...</a></p>
+
+<p><code>#include &lt;trigger_logical.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1trigger_1_1OrTrigger__inherit__graph.svg" width="255" height="242"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1trigger_1_1OrTrigger__coll__graph.svg" width="100%" height="408"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:aaf4f8a090bdd10eeba0b7849fa8ed888" id="r_aaf4f8a090bdd10eeba0b7849fa8ed888"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#aaf4f8a090bdd10eeba0b7849fa8ed888">OrTrigger</a> (std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt; A, std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt; B)</td></tr>
+<tr class="separator:aaf4f8a090bdd10eeba0b7849fa8ed888"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afe30f95de39c1375557d032b8a8111f9" id="r_afe30f95de39c1375557d032b8a8111f9"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#afe30f95de39c1375557d032b8a8111f9">~OrTrigger</a> () override=default</td></tr>
+<tr class="separator:afe30f95de39c1375557d032b8a8111f9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac8be54d91e77ed16ae3cca2417d82e0a" id="r_ac8be54d91e77ed16ae3cca2417d82e0a"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#ac8be54d91e77ed16ae3cca2417d82e0a">check</a> (const TriggerContextStruct &amp;ctx) const override</td></tr>
+<tr class="memdesc:ac8be54d91e77ed16ae3cca2417d82e0a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the trigger condition against the provided context.  <br /></td></tr>
+<tr class="separator:ac8be54d91e77ed16ae3cca2417d82e0a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a775dac97d109c5fcd5c0287ca98f308c" id="r_a775dac97d109c5fcd5c0287ca98f308c"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a775dac97d109c5fcd5c0287ca98f308c">update</a> (const TriggerContextStruct &amp;ctx) override</td></tr>
+<tr class="memdesc:a775dac97d109c5fcd5c0287ca98f308c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update any internal state with the given context (e.g., counters, windows).  <br /></td></tr>
+<tr class="separator:a775dac97d109c5fcd5c0287ca98f308c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a95a801aafb5aaa9a22566ebf722a1150" id="r_a95a801aafb5aaa9a22566ebf722a1150"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a95a801aafb5aaa9a22566ebf722a1150">step</a> (const TriggerContextStruct &amp;ctx) override</td></tr>
+<tr class="memdesc:a95a801aafb5aaa9a22566ebf722a1150"><td class="mdescLeft">&#160;</td><td class="mdescRight">similar to update but intended to be run on every step not just those where the trigger triggered  <br /></td></tr>
+<tr class="separator:a95a801aafb5aaa9a22566ebf722a1150"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab42043e55c81bac5d3f981bc139579de" id="r_ab42043e55c81bac5d3f981bc139579de"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#ab42043e55c81bac5d3f981bc139579de">reset</a> () override</td></tr>
+<tr class="memdesc:ab42043e55c81bac5d3f981bc139579de"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset internal state and diagnostics counters.  <br /></td></tr>
+<tr class="separator:ab42043e55c81bac5d3f981bc139579de"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a062af4f567dc48c088f1fcfb64cc79ec" id="r_a062af4f567dc48c088f1fcfb64cc79ec"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a062af4f567dc48c088f1fcfb64cc79ec">name</a> () const override</td></tr>
+<tr class="memdesc:a062af4f567dc48c088f1fcfb64cc79ec"><td class="mdescLeft">&#160;</td><td class="mdescRight">Short, stable name for this trigger (suitable for logs/UI).  <br /></td></tr>
+<tr class="separator:a062af4f567dc48c088f1fcfb64cc79ec"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7bca0da16353f4b04a2f40fb29c07922" id="r_a7bca0da16353f4b04a2f40fb29c07922"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a7bca0da16353f4b04a2f40fb29c07922">why</a> (const TriggerContextStruct &amp;ctx) const override</td></tr>
+<tr class="memdesc:a7bca0da16353f4b04a2f40fb29c07922"><td class="mdescLeft">&#160;</td><td class="mdescRight">Explain why the last evaluation would be true/false in a structured way.  <br /></td></tr>
+<tr class="separator:a7bca0da16353f4b04a2f40fb29c07922"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:accb56630df2f57400467d315c61dede6" id="r_accb56630df2f57400467d315c61dede6"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#accb56630df2f57400467d315c61dede6">describe</a> () const override</td></tr>
+<tr class="memdesc:accb56630df2f57400467d315c61dede6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable description of this trigger's logic.  <br /></td></tr>
+<tr class="separator:accb56630df2f57400467d315c61dede6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afc7d3eae8306ee383d76997ac3803327" id="r_afc7d3eae8306ee383d76997ac3803327"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#afc7d3eae8306ee383d76997ac3803327">numTriggers</a> () const override</td></tr>
+<tr class="memdesc:afc7d3eae8306ee383d76997ac3803327"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to true since last reset.  <br /></td></tr>
+<tr class="separator:afc7d3eae8306ee383d76997ac3803327"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0b3a7f45604dbb27e832d9559dd20997" id="r_a0b3a7f45604dbb27e832d9559dd20997"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a0b3a7f45604dbb27e832d9559dd20997">numMisses</a> () const override</td></tr>
+<tr class="memdesc:a0b3a7f45604dbb27e832d9559dd20997"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to false since last reset.  <br /></td></tr>
+<tr class="separator:a0b3a7f45604dbb27e832d9559dd20997"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1trigger_1_1Trigger"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1trigger_1_1Trigger')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td></tr>
+<tr class="memitem:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger" id="r_a2c077ccbaf4de9f7068e50144391edda"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a> ()=default</td></tr>
+<tr class="memdesc:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for polymorphic use.  <br /></td></tr>
+<tr class="separator:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a6da04b5b15371f7087be03bb337dbdd6" id="r_a6da04b5b15371f7087be03bb337dbdd6"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a6da04b5b15371f7087be03bb337dbdd6">m_A</a></td></tr>
+<tr class="separator:a6da04b5b15371f7087be03bb337dbdd6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a30dec370b61a5f0562956394b89e8f89" id="r_a30dec370b61a5f0562956394b89e8f89"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a30dec370b61a5f0562956394b89e8f89">m_B</a></td></tr>
+<tr class="separator:a30dec370b61a5f0562956394b89e8f89"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a35d519d5266c68b696b779b275574ebf" id="r_a35d519d5266c68b696b779b275574ebf"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a35d519d5266c68b696b779b275574ebf">m_hits</a> = 0</td></tr>
+<tr class="separator:a35d519d5266c68b696b779b275574ebf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b" id="r_ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b">m_misses</a> = 0</td></tr>
+<tr class="separator:ae72e6e9f1fbfbd11fbfe9aa6d4ff5a3b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af595a5daab0f5b3ffc450c6de6737517" id="r_af595a5daab0f5b3ffc450c6de6737517"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#af595a5daab0f5b3ffc450c6de6737517">m_updates</a> = 0</td></tr>
+<tr class="separator:af595a5daab0f5b3ffc450c6de6737517"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adc6f560d9199455ba98d85eadfe02847" id="r_adc6f560d9199455ba98d85eadfe02847"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#adc6f560d9199455ba98d85eadfe02847">m_resets</a> = 0</td></tr>
+<tr class="separator:adc6f560d9199455ba98d85eadfe02847"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a596db4a92ebf789cea1c431d3d2220c7" id="r_a596db4a92ebf789cea1c431d3d2220c7"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a596db4a92ebf789cea1c431d3d2220c7">m_steps</a> = 0</td></tr>
+<tr class="separator:a596db4a92ebf789cea1c431d3d2220c7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><div class="compoundTemplParams">template&lt;typename TriggerContextStruct&gt;<br />
+class gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</div><p>Logical disjunction of two triggers with short-circuit evaluation. </p>
+<p>check(ctx) returns A.check(ctx) || B.check(ctx). why(ctx) returns early when A is true. update(ctx) calls <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a775dac97d109c5fcd5c0287ca98f308c" title="Update any internal state with the given context (e.g., counters, windows).">update()</a> on both A and B. Counters behave as in <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html" title="Logical conjunction of two triggers with short-circuit evaluation.">AndTrigger</a>. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="aaf4f8a090bdd10eeba0b7849fa8ed888" name="aaf4f8a090bdd10eeba0b7849fa8ed888"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaf4f8a090bdd10eeba0b7849fa8ed888">&#9670;&#160;</a></span>OrTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::OrTrigger </td>
+          <td>(</td>
+          <td class="paramtype">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;&#160;</td>
+          <td class="paramname"><em>A</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; TriggerContextStruct &gt; &gt;&#160;</td>
+          <td class="paramname"><em>B</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="afe30f95de39c1375557d032b8a8111f9" name="afe30f95de39c1375557d032b8a8111f9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afe30f95de39c1375557d032b8a8111f9">&#9670;&#160;</a></span>~OrTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::~<a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">OrTrigger</a> </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ac8be54d91e77ed16ae3cca2417d82e0a" name="ac8be54d91e77ed16ae3cca2417d82e0a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac8be54d91e77ed16ae3cca2417d82e0a">&#9670;&#160;</a></span>check()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::check </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate the trigger condition against the provided context. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot (immutable view) used to evaluate the condition. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if the condition is satisfied; false otherwise. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a1579ffb1c841cda4e67990b42d400d88">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="accb56630df2f57400467d315c61dede6" name="accb56630df2f57400467d315c61dede6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#accb56630df2f57400467d315c61dede6">&#9670;&#160;</a></span>describe()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::describe </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Human-readable description of this trigger's logic. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a402cdd062e9479abbcca02e3d94e528f">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a062af4f567dc48c088f1fcfb64cc79ec" name="a062af4f567dc48c088f1fcfb64cc79ec"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a062af4f567dc48c088f1fcfb64cc79ec">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Short, stable name for this trigger (suitable for logs/UI). </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a3e5b017147f22ca0733733cd39e334b7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a0b3a7f45604dbb27e832d9559dd20997" name="a0b3a7f45604dbb27e832d9559dd20997"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0b3a7f45604dbb27e832d9559dd20997">&#9670;&#160;</a></span>numMisses()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::numMisses </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Total number of times this trigger evaluated to false since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a81848e5af844795d879b6d885a2701d7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="afc7d3eae8306ee383d76997ac3803327" name="afc7d3eae8306ee383d76997ac3803327"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afc7d3eae8306ee383d76997ac3803327">&#9670;&#160;</a></span>numTriggers()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::numTriggers </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Total number of times this trigger evaluated to true since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="ab42043e55c81bac5d3f981bc139579de" name="ab42043e55c81bac5d3f981bc139579de"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab42043e55c81bac5d3f981bc139579de">&#9670;&#160;</a></span>reset()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::reset </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reset internal state and diagnostics counters. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#af652af761675736419b961b6946c728d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a95a801aafb5aaa9a22566ebf722a1150" name="a95a801aafb5aaa9a22566ebf722a1150"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a95a801aafb5aaa9a22566ebf722a1150">&#9670;&#160;</a></span>step()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::step </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>similar to update but intended to be run on every step not just those where the trigger triggered </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot used to update state. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4b7ffa4d8d31e2118a8e86172be51041">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a775dac97d109c5fcd5c0287ca98f308c" name="a775dac97d109c5fcd5c0287ca98f308c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a775dac97d109c5fcd5c0287ca98f308c">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::update </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Update any internal state with the given context (e.g., counters, windows). </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot used to update state. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a048899795704f68668960454d118a6fc">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#a7bca0da16353f4b04a2f40fb29c07922">&#9670;&#160;</a></span>why()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">gridfire::trigger::OrTrigger</a>&lt; TriggerContextStruct &gt;::why </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Explain why the last evaluation would be true/false in a structured way. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot for the explanation. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> tree with a boolean value and per-cause details. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a9f020d828ca36a601b780566cc3377ea">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a6da04b5b15371f7087be03bb337dbdd6" name="a6da04b5b15371f7087be03bb337dbdd6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6da04b5b15371f7087be03bb337dbdd6">&#9670;&#160;</a></span>m_A</h2>
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+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
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+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
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+<table class="mlabels">
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+      <table class="memname">
+        <tr>
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+<h2 class="memtitle"><span class="permalink"><a href="#a35d519d5266c68b696b779b275574ebf">&#9670;&#160;</a></span>m_hits</h2>
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+<h2 class="memtitle"><span class="permalink"><a href="#a596db4a92ebf789cea1c431d3d2220c7">&#9670;&#160;</a></span>m_steps</h2>
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+  <div class="headertitle"><div class="title">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt; Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a1579ffb1c841cda4e67990b42d400d88">check</a>(const TriggerContextStruct &amp;ctx) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a402cdd062e9479abbcca02e3d94e528f">describe</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a3e5b017147f22ca0733733cd39e334b7">name</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a81848e5af844795d879b6d885a2701d7">numMisses</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">numTriggers</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#af652af761675736419b961b6946c728d">reset</a>()=0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4b7ffa4d8d31e2118a8e86172be51041">step</a>(const TriggerContextStruct &amp;ctx)=0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a048899795704f68668960454d118a6fc">update</a>(const TriggerContextStruct &amp;ctx)=0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a9f020d828ca36a601b780566cc3377ea">why</a>(const TriggerContextStruct &amp;ctx) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1trigger_1_1Trigger-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt; Class Template Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Generic trigger interface for signaling events/conditions during integration.  
+ <a href="classgridfire_1_1trigger_1_1Trigger.html#details">More...</a></p>
+
+<p><code>#include &lt;trigger_abstract.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1trigger_1_1Trigger__inherit__graph.svg" width="100%" height="516"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a2c077ccbaf4de9f7068e50144391edda" id="r_a2c077ccbaf4de9f7068e50144391edda"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a> ()=default</td></tr>
+<tr class="memdesc:a2c077ccbaf4de9f7068e50144391edda"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for polymorphic use.  <br /></td></tr>
+<tr class="separator:a2c077ccbaf4de9f7068e50144391edda"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1579ffb1c841cda4e67990b42d400d88" id="r_a1579ffb1c841cda4e67990b42d400d88"><td class="memItemLeft" align="right" valign="top">virtual bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a1579ffb1c841cda4e67990b42d400d88">check</a> (const TriggerContextStruct &amp;ctx) const =0</td></tr>
+<tr class="memdesc:a1579ffb1c841cda4e67990b42d400d88"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the trigger condition against the provided context.  <br /></td></tr>
+<tr class="separator:a1579ffb1c841cda4e67990b42d400d88"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a048899795704f68668960454d118a6fc" id="r_a048899795704f68668960454d118a6fc"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a048899795704f68668960454d118a6fc">update</a> (const TriggerContextStruct &amp;ctx)=0</td></tr>
+<tr class="memdesc:a048899795704f68668960454d118a6fc"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update any internal state with the given context (e.g., counters, windows).  <br /></td></tr>
+<tr class="separator:a048899795704f68668960454d118a6fc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4b7ffa4d8d31e2118a8e86172be51041" id="r_a4b7ffa4d8d31e2118a8e86172be51041"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4b7ffa4d8d31e2118a8e86172be51041">step</a> (const TriggerContextStruct &amp;ctx)=0</td></tr>
+<tr class="memdesc:a4b7ffa4d8d31e2118a8e86172be51041"><td class="mdescLeft">&#160;</td><td class="mdescRight">similar to update but intended to be run on every step not just those where the trigger triggered  <br /></td></tr>
+<tr class="separator:a4b7ffa4d8d31e2118a8e86172be51041"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af652af761675736419b961b6946c728d" id="r_af652af761675736419b961b6946c728d"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#af652af761675736419b961b6946c728d">reset</a> ()=0</td></tr>
+<tr class="memdesc:af652af761675736419b961b6946c728d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset internal state and diagnostics counters.  <br /></td></tr>
+<tr class="separator:af652af761675736419b961b6946c728d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3e5b017147f22ca0733733cd39e334b7" id="r_a3e5b017147f22ca0733733cd39e334b7"><td class="memItemLeft" align="right" valign="top">virtual std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a3e5b017147f22ca0733733cd39e334b7">name</a> () const =0</td></tr>
+<tr class="memdesc:a3e5b017147f22ca0733733cd39e334b7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Short, stable name for this trigger (suitable for logs/UI).  <br /></td></tr>
+<tr class="separator:a3e5b017147f22ca0733733cd39e334b7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a402cdd062e9479abbcca02e3d94e528f" id="r_a402cdd062e9479abbcca02e3d94e528f"><td class="memItemLeft" align="right" valign="top">virtual std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a402cdd062e9479abbcca02e3d94e528f">describe</a> () const =0</td></tr>
+<tr class="memdesc:a402cdd062e9479abbcca02e3d94e528f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable description of this trigger's logic.  <br /></td></tr>
+<tr class="separator:a402cdd062e9479abbcca02e3d94e528f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9f020d828ca36a601b780566cc3377ea" id="r_a9f020d828ca36a601b780566cc3377ea"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a9f020d828ca36a601b780566cc3377ea">why</a> (const TriggerContextStruct &amp;ctx) const =0</td></tr>
+<tr class="memdesc:a9f020d828ca36a601b780566cc3377ea"><td class="mdescLeft">&#160;</td><td class="mdescRight">Explain why the last evaluation would be true/false in a structured way.  <br /></td></tr>
+<tr class="separator:a9f020d828ca36a601b780566cc3377ea"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4ea3abfb76a09c4f55ad05d73a2cf12d" id="r_a4ea3abfb76a09c4f55ad05d73a2cf12d"><td class="memItemLeft" align="right" valign="top">virtual size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">numTriggers</a> () const =0</td></tr>
+<tr class="memdesc:a4ea3abfb76a09c4f55ad05d73a2cf12d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to true since last reset.  <br /></td></tr>
+<tr class="separator:a4ea3abfb76a09c4f55ad05d73a2cf12d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a81848e5af844795d879b6d885a2701d7" id="r_a81848e5af844795d879b6d885a2701d7"><td class="memItemLeft" align="right" valign="top">virtual size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a81848e5af844795d879b6d885a2701d7">numMisses</a> () const =0</td></tr>
+<tr class="memdesc:a81848e5af844795d879b6d885a2701d7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to false since last reset.  <br /></td></tr>
+<tr class="separator:a81848e5af844795d879b6d885a2701d7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><div class="compoundTemplParams">template&lt;typename TriggerContextStruct&gt;<br />
+class gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</div><p>Generic trigger interface for signaling events/conditions during integration. </p>
+<p>A <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html" title="Generic trigger interface for signaling events/conditions during integration.">Trigger</a> encapsulates a condition evaluated against a user-defined context struct (TriggerContextStruct). The interface supports:</p><ul>
+<li><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a1579ffb1c841cda4e67990b42d400d88" title="Evaluate the trigger condition against the provided context.">check()</a>: evaluate the current condition without mutating external state</li>
+<li><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a048899795704f68668960454d118a6fc" title="Update any internal state with the given context (e.g., counters, windows).">update()</a>: feed the context to update internal state (counters, sliding windows, etc.)</li>
+<li><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#af652af761675736419b961b6946c728d" title="Reset internal state and diagnostics counters.">reset()</a>: clear internal state and counters</li>
+<li><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a3e5b017147f22ca0733733cd39e334b7" title="Short, stable name for this trigger (suitable for logs/UI).">name()</a>/describe(): human-readable identification and textual description</li>
+<li><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a9f020d828ca36a601b780566cc3377ea" title="Explain why the last evaluation would be true/false in a structured way.">why()</a>: structured explanation (tree of <a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a>) of the last evaluation</li>
+<li><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d" title="Total number of times this trigger evaluated to true since last reset.">numTriggers()</a>/numMisses(): simple counters for diagnostics</li>
+</ul>
+<p>Logical compositions (AND/OR/NOT/EveryNth) are provided in <a class="el" href="trigger__logical_8h.html" title="Combinators for composing triggers with boolean logic (AND/OR/NOT/EveryNth).">trigger_logical.h</a> and implement this interface for any TriggerContextStruct.</p>
+<dl class="tparams"><dt>Template Parameters</dt><dd>
+  <table class="tparams">
+    <tr><td class="paramname">TriggerContextStruct</td><td>User-defined context passed to triggers (e.g., timestep info). </td></tr>
+  </table>
+  </dd>
+</dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a2c077ccbaf4de9f7068e50144391edda" name="a2c077ccbaf4de9f7068e50144391edda"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2c077ccbaf4de9f7068e50144391edda">&#9670;&#160;</a></span>~Trigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger</a>&lt; TriggerContextStruct &gt;::~<a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a> </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Virtual destructor for polymorphic use. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a1579ffb1c841cda4e67990b42d400d88" name="a1579ffb1c841cda4e67990b42d400d88"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1579ffb1c841cda4e67990b42d400d88">&#9670;&#160;</a></span>check()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual bool <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger</a>&lt; TriggerContextStruct &gt;::check </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate the trigger condition against the provided context. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot (immutable view) used to evaluate the condition. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if the condition is satisfied; false otherwise. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a50df7fefee167390522aa258fa6ee960">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a3855b15459217383647ecdf12bc35775">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a04598611b0807cad395bdd2fbc41a6c2">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#ae8765656a45319335c2bb90c3fb3d308">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#aaefdfa86856f9f7839b6a7fdffa4a579">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#ac8be54d91e77ed16ae3cca2417d82e0a">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#ae453a72df20fdd416443ef7867f86b92">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, and <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a69fbb099f8d13d39602f58fa8aa8e7f2">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a402cdd062e9479abbcca02e3d94e528f" name="a402cdd062e9479abbcca02e3d94e528f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a402cdd062e9479abbcca02e3d94e528f">&#9670;&#160;</a></span>describe()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::string <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger</a>&lt; TriggerContextStruct &gt;::describe </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Human-readable description of this trigger's logic. </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a0f412b8f788ab7990e353d62ab7d9a16">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#ad0dd92f9da6c291c3bd57c0983940035">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a8ba5a942bb61347851030d1eb6bbaa74">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#aa2bb19e4a1e24f6fd7f86d0c80ebbec3">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a2dcd635c6bdbcfe517adca6e2bd5c408">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#accb56630df2f57400467d315c61dede6">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#ad8166350329db3e1f50954afbb311a35">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, and <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#aab88715f3c94437ca7f3fcb1698c69de">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a3e5b017147f22ca0733733cd39e334b7" name="a3e5b017147f22ca0733733cd39e334b7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3e5b017147f22ca0733733cd39e334b7">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::string <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger</a>&lt; TriggerContextStruct &gt;::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Short, stable name for this trigger (suitable for logs/UI). </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a87fc9fe6bd8762f148c858452ec30043">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a594893c029f044be3119118808470f7a">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a290e5643eea08726d2fd44a1cd5617d0">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a92a57cea3b58bd7948c3c3fb4f75619b">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#ab78539e5cd88194ab9e98434793eae3f">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a062af4f567dc48c088f1fcfb64cc79ec">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#acc3bd2938f7746997fb1d255681d8b20">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, and <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a4a834d24286f9204995bf78fb69f35dc">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a81848e5af844795d879b6d885a2701d7" name="a81848e5af844795d879b6d885a2701d7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a81848e5af844795d879b6d885a2701d7">&#9670;&#160;</a></span>numMisses()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual size_t <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger</a>&lt; TriggerContextStruct &gt;::numMisses </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Total number of times this trigger evaluated to false since last reset. </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a273eb8a3e80d1235d2b3f252e55c5b50">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a0e1ad148f9f3232992a4b16e440c249a">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a94bb1de08a5ff55e1874f595f8c8965c">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#aa26bf911c73b7f2ec343d473caf13718">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#addfd61f8cb234881f535fb8f4d618d74">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a0b3a7f45604dbb27e832d9559dd20997">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a2f9b0d6a6ac54f6371c5a208c06826ea">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, and <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#ae7776f4a526db3245e64a74a3b0172d3">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a4ea3abfb76a09c4f55ad05d73a2cf12d" name="a4ea3abfb76a09c4f55ad05d73a2cf12d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4ea3abfb76a09c4f55ad05d73a2cf12d">&#9670;&#160;</a></span>numTriggers()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual size_t <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger</a>&lt; TriggerContextStruct &gt;::numTriggers </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Total number of times this trigger evaluated to true since last reset. </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a34d285584ea96f71b99eefad8c738296">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a32980aaf6d9c7632c024b4b74b1d9e70">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#ad2a7c2567b100f97a024f65818ecefed">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#aa7cc311316539b2d348422ba907dc64e">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#afffb4281569963183d7db3ed1568eb3a">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#afc7d3eae8306ee383d76997ac3803327">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#ae2d27d72af9e1fbf711a58e4583b43a3">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, and <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a7e5568c9d7799b7f80ad0d3efe2cd143">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="af652af761675736419b961b6946c728d" name="af652af761675736419b961b6946c728d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af652af761675736419b961b6946c728d">&#9670;&#160;</a></span>reset()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual void <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger</a>&lt; TriggerContextStruct &gt;::reset </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reset internal state and diagnostics counters. </p>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#af4034fa431e6c88fd05c50cce31b2fa0">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a9b782cbf033ed2023da6b2d55dcefc4e">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a0fe6af73b11b820561bd4e5552890d4e">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a0bcab0247b3db618b76bd6769cf9a2ea">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a2436d8643911ade907e03fb29531ceaa">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#ab42043e55c81bac5d3f981bc139579de">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#afe337517b77e5433d92ded3a64565141">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, and <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#abf218d255bde157540b51cd6a54f6eb1">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a4b7ffa4d8d31e2118a8e86172be51041" name="a4b7ffa4d8d31e2118a8e86172be51041"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4b7ffa4d8d31e2118a8e86172be51041">&#9670;&#160;</a></span>step()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual void <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger</a>&lt; TriggerContextStruct &gt;::step </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>similar to update but intended to be run on every step not just those where the trigger triggered </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot used to update state. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#aafc7f40bde2c78f4d100b6f9da771831">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a8b882c6ba6e267d7051031140bbb7ad6">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a9723e389aeba05fdb3d4fd1dcc1ba07d">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#aaef2090ed67a7c27967821f75a61e524">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a8e743e8ebe71f9ded835177db6fad908">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a95a801aafb5aaa9a22566ebf722a1150">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a5096cb7e70ea357f28e1b9fc8301c793">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, and <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a26d0aca39087a1f69e96e0701ca83f81">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a048899795704f68668960454d118a6fc" name="a048899795704f68668960454d118a6fc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a048899795704f68668960454d118a6fc">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual void <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger</a>&lt; TriggerContextStruct &gt;::update </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Update any internal state with the given context (e.g., counters, windows). </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot used to update state. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a468bf58f66417493501c59d7a8aabc98">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a179cb09a91d5c638d7a347137b208767">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#af6bff6a484e8729445c26620b489665d">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#ae47bbdf6edae798f30866c1ac4104cc1">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a62f7dbbcf0554caa68e3d778580b3c1d">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a775dac97d109c5fcd5c0287ca98f308c">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a846432abf33c7602af0fbb5475c0ad32">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, and <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a0dd783afab7ef6005f0241f9de7b31f6">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a9f020d828ca36a601b780566cc3377ea" name="a9f020d828ca36a601b780566cc3377ea"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9f020d828ca36a601b780566cc3377ea">&#9670;&#160;</a></span>why()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename TriggerContextStruct &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual <a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger</a>&lt; TriggerContextStruct &gt;::why </td>
+          <td>(</td>
+          <td class="paramtype">const TriggerContextStruct &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Explain why the last evaluation would be true/false in a structured way. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot for the explanation. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> tree with a boolean value and per-cause details. </dd></dl>
+
+<p>Implemented in <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a9dfab0b765d3a4c362cecd860d59f58a">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a3af973e466ba62ebf1e41c608355e327">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a22d8bc7aacbc388108225c26158e918c">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#aedd397b71cd5b1ad26a0b21a34cf5631">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a01033721e8f5d90483d65c904399cf96">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a7bca0da16353f4b04a2f40fb29c07922">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#abfb3eb7befba646ce9f11f36a63750ae">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, and <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a3bf0d69122f801deca4b62db47262d9b">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/trigger/<a class="el" href="trigger__abstract_8h.html">trigger_abstract.h</a></li>
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+  <div class="headertitle"><div class="title">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a5ae9ce66d4bbafd83145f8545a32d33a">abs_failure</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) const</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#ae8765656a45319335c2bb90c3fb3d308">check</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a63010d8ba73689dda0c2228a1462aae2">ConvergenceFailureTrigger</a>(size_t totalFailures, float relativeFailureRate, size_t windowSize)</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a3d8d9eafff17ea6a283afbc7e8b450bb">current_mean</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#aa2bb19e4a1e24f6fd7f86d0c80ebbec3">describe</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#afd5c9867790fc5ef453bc6a5e5494766">m_hits</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#abb65f2fb74ea74a7f078b4e14f8bc949">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a1b28f79b7d5d4b6a947bdf75c049739f">m_misses</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a19795b0ebf01df3e70fe858cfb527d08">m_relativeFailureRate</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a270dae9d1f4e3ee410389e113d7f0857">m_resets</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a9e116ac645ba31906dae26234c47c3f4">m_totalFailures</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#acf63dd6e786231ac6c16e590d01bc6eb">m_updates</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a8df9f55e0af1a16ee56678a109f08920">m_window</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#abf4814a4423cfbe816b07d5eea4efea4">m_windowSize</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a92a57cea3b58bd7948c3c3fb4f75619b">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#aa26bf911c73b7f2ec343d473caf13718">numMisses</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#aa7cc311316539b2d348422ba907dc64e">numTriggers</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a4180dc6761c073acd82583a834ca09fd">rel_failure</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) const</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a0bcab0247b3db618b76bd6769cf9a2ea">reset</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#aaef2090ed67a7c27967821f75a61e524">step</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#ae47bbdf6edae798f30866c1ac4104cc1">update</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#aedd397b71cd5b1ad26a0b21a34cf5631">why</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html b/docs/html/classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;engine_partitioning_trigger.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger__inherit__graph.svg" width="508" height="80"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger__coll__graph.svg" width="583" height="131"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a63010d8ba73689dda0c2228a1462aae2" id="r_a63010d8ba73689dda0c2228a1462aae2"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a63010d8ba73689dda0c2228a1462aae2">ConvergenceFailureTrigger</a> (size_t totalFailures, float relativeFailureRate, size_t windowSize)</td></tr>
+<tr class="separator:a63010d8ba73689dda0c2228a1462aae2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae8765656a45319335c2bb90c3fb3d308" id="r_ae8765656a45319335c2bb90c3fb3d308"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#ae8765656a45319335c2bb90c3fb3d308">check</a> (const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) const override</td></tr>
+<tr class="memdesc:ae8765656a45319335c2bb90c3fb3d308"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate the trigger condition against the provided context.  <br /></td></tr>
+<tr class="separator:ae8765656a45319335c2bb90c3fb3d308"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae47bbdf6edae798f30866c1ac4104cc1" id="r_ae47bbdf6edae798f30866c1ac4104cc1"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#ae47bbdf6edae798f30866c1ac4104cc1">update</a> (const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) override</td></tr>
+<tr class="memdesc:ae47bbdf6edae798f30866c1ac4104cc1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update any internal state with the given context (e.g., counters, windows).  <br /></td></tr>
+<tr class="separator:ae47bbdf6edae798f30866c1ac4104cc1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aaef2090ed67a7c27967821f75a61e524" id="r_aaef2090ed67a7c27967821f75a61e524"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#aaef2090ed67a7c27967821f75a61e524">step</a> (const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) override</td></tr>
+<tr class="memdesc:aaef2090ed67a7c27967821f75a61e524"><td class="mdescLeft">&#160;</td><td class="mdescRight">similar to update but intended to be run on every step not just those where the trigger triggered  <br /></td></tr>
+<tr class="separator:aaef2090ed67a7c27967821f75a61e524"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0bcab0247b3db618b76bd6769cf9a2ea" id="r_a0bcab0247b3db618b76bd6769cf9a2ea"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a0bcab0247b3db618b76bd6769cf9a2ea">reset</a> () override</td></tr>
+<tr class="memdesc:a0bcab0247b3db618b76bd6769cf9a2ea"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset internal state and diagnostics counters.  <br /></td></tr>
+<tr class="separator:a0bcab0247b3db618b76bd6769cf9a2ea"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a92a57cea3b58bd7948c3c3fb4f75619b" id="r_a92a57cea3b58bd7948c3c3fb4f75619b"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a92a57cea3b58bd7948c3c3fb4f75619b">name</a> () const override</td></tr>
+<tr class="memdesc:a92a57cea3b58bd7948c3c3fb4f75619b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Short, stable name for this trigger (suitable for logs/UI).  <br /></td></tr>
+<tr class="separator:a92a57cea3b58bd7948c3c3fb4f75619b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa2bb19e4a1e24f6fd7f86d0c80ebbec3" id="r_aa2bb19e4a1e24f6fd7f86d0c80ebbec3"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#aa2bb19e4a1e24f6fd7f86d0c80ebbec3">describe</a> () const override</td></tr>
+<tr class="memdesc:aa2bb19e4a1e24f6fd7f86d0c80ebbec3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable description of this trigger's logic.  <br /></td></tr>
+<tr class="separator:aa2bb19e4a1e24f6fd7f86d0c80ebbec3"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aedd397b71cd5b1ad26a0b21a34cf5631" id="r_aedd397b71cd5b1ad26a0b21a34cf5631"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#aedd397b71cd5b1ad26a0b21a34cf5631">why</a> (const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) const override</td></tr>
+<tr class="memdesc:aedd397b71cd5b1ad26a0b21a34cf5631"><td class="mdescLeft">&#160;</td><td class="mdescRight">Explain why the last evaluation would be true/false in a structured way.  <br /></td></tr>
+<tr class="separator:aedd397b71cd5b1ad26a0b21a34cf5631"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa7cc311316539b2d348422ba907dc64e" id="r_aa7cc311316539b2d348422ba907dc64e"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#aa7cc311316539b2d348422ba907dc64e">numTriggers</a> () const override</td></tr>
+<tr class="memdesc:aa7cc311316539b2d348422ba907dc64e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to true since last reset.  <br /></td></tr>
+<tr class="separator:aa7cc311316539b2d348422ba907dc64e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa26bf911c73b7f2ec343d473caf13718" id="r_aa26bf911c73b7f2ec343d473caf13718"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#aa26bf911c73b7f2ec343d473caf13718">numMisses</a> () const override</td></tr>
+<tr class="memdesc:aa26bf911c73b7f2ec343d473caf13718"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of times this trigger evaluated to false since last reset.  <br /></td></tr>
+<tr class="separator:aa26bf911c73b7f2ec343d473caf13718"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1trigger_1_1Trigger"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1trigger_1_1Trigger')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a></td></tr>
+<tr class="memitem:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger" id="r_a2c077ccbaf4de9f7068e50144391edda"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a> ()=default</td></tr>
+<tr class="memdesc:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for polymorphic use.  <br /></td></tr>
+<tr class="separator:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:abb65f2fb74ea74a7f078b4e14f8bc949" id="r_abb65f2fb74ea74a7f078b4e14f8bc949"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#abb65f2fb74ea74a7f078b4e14f8bc949">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="memdesc:abb65f2fb74ea74a7f078b4e14f8bc949"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logger used for trace/error diagnostics.  <br /></td></tr>
+<tr class="separator:abb65f2fb74ea74a7f078b4e14f8bc949"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader">Diagnostics counters</h2></td></tr>
+<tr class="memitem:afd5c9867790fc5ef453bc6a5e5494766" id="r_afd5c9867790fc5ef453bc6a5e5494766"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#afd5c9867790fc5ef453bc6a5e5494766">m_hits</a> = 0</td></tr>
+<tr class="separator:afd5c9867790fc5ef453bc6a5e5494766"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1b28f79b7d5d4b6a947bdf75c049739f" id="r_a1b28f79b7d5d4b6a947bdf75c049739f"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a1b28f79b7d5d4b6a947bdf75c049739f">m_misses</a> = 0</td></tr>
+<tr class="separator:a1b28f79b7d5d4b6a947bdf75c049739f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acf63dd6e786231ac6c16e590d01bc6eb" id="r_acf63dd6e786231ac6c16e590d01bc6eb"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#acf63dd6e786231ac6c16e590d01bc6eb">m_updates</a> = 0</td></tr>
+<tr class="separator:acf63dd6e786231ac6c16e590d01bc6eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a270dae9d1f4e3ee410389e113d7f0857" id="r_a270dae9d1f4e3ee410389e113d7f0857"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a270dae9d1f4e3ee410389e113d7f0857">m_resets</a> = 0</td></tr>
+<tr class="separator:a270dae9d1f4e3ee410389e113d7f0857"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9e116ac645ba31906dae26234c47c3f4" id="r_a9e116ac645ba31906dae26234c47c3f4"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a9e116ac645ba31906dae26234c47c3f4">m_totalFailures</a></td></tr>
+<tr class="separator:a9e116ac645ba31906dae26234c47c3f4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a19795b0ebf01df3e70fe858cfb527d08" id="r_a19795b0ebf01df3e70fe858cfb527d08"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a19795b0ebf01df3e70fe858cfb527d08">m_relativeFailureRate</a></td></tr>
+<tr class="separator:a19795b0ebf01df3e70fe858cfb527d08"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abf4814a4423cfbe816b07d5eea4efea4" id="r_abf4814a4423cfbe816b07d5eea4efea4"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#abf4814a4423cfbe816b07d5eea4efea4">m_windowSize</a></td></tr>
+<tr class="separator:abf4814a4423cfbe816b07d5eea4efea4"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8df9f55e0af1a16ee56678a109f08920" id="r_a8df9f55e0af1a16ee56678a109f08920"><td class="memItemLeft" align="right" valign="top">std::deque&lt; size_t &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a8df9f55e0af1a16ee56678a109f08920">m_window</a></td></tr>
+<tr class="separator:a8df9f55e0af1a16ee56678a109f08920"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a3d8d9eafff17ea6a283afbc7e8b450bb"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5ae9ce66d4bbafd83145f8545a32d33a" id="r_a5ae9ce66d4bbafd83145f8545a32d33a"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a5ae9ce66d4bbafd83145f8545a32d33a">abs_failure</a> (const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) const</td></tr>
+<tr class="separator:a5ae9ce66d4bbafd83145f8545a32d33a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4180dc6761c073acd82583a834ca09fd" id="r_a4180dc6761c073acd82583a834ca09fd"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a4180dc6761c073acd82583a834ca09fd">rel_failure</a> (const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) const</td></tr>
+<tr class="separator:a4180dc6761c073acd82583a834ca09fd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a63010d8ba73689dda0c2228a1462aae2" name="a63010d8ba73689dda0c2228a1462aae2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a63010d8ba73689dda0c2228a1462aae2">&#9670;&#160;</a></span>ConvergenceFailureTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::ConvergenceFailureTrigger </td>
+          <td>(</td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>totalFailures</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">float&#160;</td>
+          <td class="paramname"><em>relativeFailureRate</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>windowSize</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a5ae9ce66d4bbafd83145f8545a32d33a" name="a5ae9ce66d4bbafd83145f8545a32d33a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5ae9ce66d4bbafd83145f8545a32d33a">&#9670;&#160;</a></span>abs_failure()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::abs_failure </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae8765656a45319335c2bb90c3fb3d308" name="ae8765656a45319335c2bb90c3fb3d308"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae8765656a45319335c2bb90c3fb3d308">&#9670;&#160;</a></span>check()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::check </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate the trigger condition against the provided context. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot (immutable view) used to evaluate the condition. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if the condition is satisfied; false otherwise. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a1579ffb1c841cda4e67990b42d400d88">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a3d8d9eafff17ea6a283afbc7e8b450bb" name="a3d8d9eafff17ea6a283afbc7e8b450bb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3d8d9eafff17ea6a283afbc7e8b450bb">&#9670;&#160;</a></span>current_mean()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::current_mean </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aa2bb19e4a1e24f6fd7f86d0c80ebbec3" name="aa2bb19e4a1e24f6fd7f86d0c80ebbec3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa2bb19e4a1e24f6fd7f86d0c80ebbec3">&#9670;&#160;</a></span>describe()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::describe </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Human-readable description of this trigger's logic. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a402cdd062e9479abbcca02e3d94e528f">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a92a57cea3b58bd7948c3c3fb4f75619b" name="a92a57cea3b58bd7948c3c3fb4f75619b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a92a57cea3b58bd7948c3c3fb4f75619b">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Short, stable name for this trigger (suitable for logs/UI). </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a3e5b017147f22ca0733733cd39e334b7">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="aa26bf911c73b7f2ec343d473caf13718" name="aa26bf911c73b7f2ec343d473caf13718"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa26bf911c73b7f2ec343d473caf13718">&#9670;&#160;</a></span>numMisses()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::numMisses </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Total number of times this trigger evaluated to false since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a81848e5af844795d879b6d885a2701d7">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="aa7cc311316539b2d348422ba907dc64e" name="aa7cc311316539b2d348422ba907dc64e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa7cc311316539b2d348422ba907dc64e">&#9670;&#160;</a></span>numTriggers()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::numTriggers </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Total number of times this trigger evaluated to true since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a4180dc6761c073acd82583a834ca09fd" name="a4180dc6761c073acd82583a834ca09fd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4180dc6761c073acd82583a834ca09fd">&#9670;&#160;</a></span>rel_failure()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::rel_failure </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a0bcab0247b3db618b76bd6769cf9a2ea" name="a0bcab0247b3db618b76bd6769cf9a2ea"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0bcab0247b3db618b76bd6769cf9a2ea">&#9670;&#160;</a></span>reset()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::reset </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reset internal state and diagnostics counters. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#af652af761675736419b961b6946c728d">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="aaef2090ed67a7c27967821f75a61e524" name="aaef2090ed67a7c27967821f75a61e524"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaef2090ed67a7c27967821f75a61e524">&#9670;&#160;</a></span>step()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::step </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>similar to update but intended to be run on every step not just those where the trigger triggered </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot used to update state. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4b7ffa4d8d31e2118a8e86172be51041">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="ae47bbdf6edae798f30866c1ac4104cc1" name="ae47bbdf6edae798f30866c1ac4104cc1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae47bbdf6edae798f30866c1ac4104cc1">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::update </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Update any internal state with the given context (e.g., counters, windows). </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot used to update state. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a048899795704f68668960454d118a6fc">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="aedd397b71cd5b1ad26a0b21a34cf5631" name="aedd397b71cd5b1ad26a0b21a34cf5631"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aedd397b71cd5b1ad26a0b21a34cf5631">&#9670;&#160;</a></span>why()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::why </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Explain why the last evaluation would be true/false in a structured way. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot for the explanation. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A <a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> tree with a boolean value and per-cause details. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a9f020d828ca36a601b780566cc3377ea">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="afd5c9867790fc5ef453bc6a5e5494766" name="afd5c9867790fc5ef453bc6a5e5494766"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afd5c9867790fc5ef453bc6a5e5494766">&#9670;&#160;</a></span>m_hits</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::m_hits = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="abb65f2fb74ea74a7f078b4e14f8bc949" name="abb65f2fb74ea74a7f078b4e14f8bc949"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abb65f2fb74ea74a7f078b4e14f8bc949">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logger used for trace/error diagnostics. </p>
+
+</div>
+</div>
+<a id="a1b28f79b7d5d4b6a947bdf75c049739f" name="a1b28f79b7d5d4b6a947bdf75c049739f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1b28f79b7d5d4b6a947bdf75c049739f">&#9670;&#160;</a></span>m_misses</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::m_misses = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a19795b0ebf01df3e70fe858cfb527d08" name="a19795b0ebf01df3e70fe858cfb527d08"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a19795b0ebf01df3e70fe858cfb527d08">&#9670;&#160;</a></span>m_relativeFailureRate</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::m_relativeFailureRate</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a270dae9d1f4e3ee410389e113d7f0857" name="a270dae9d1f4e3ee410389e113d7f0857"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a270dae9d1f4e3ee410389e113d7f0857">&#9670;&#160;</a></span>m_resets</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::m_resets = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a9e116ac645ba31906dae26234c47c3f4" name="a9e116ac645ba31906dae26234c47c3f4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9e116ac645ba31906dae26234c47c3f4">&#9670;&#160;</a></span>m_totalFailures</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::m_totalFailures</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="acf63dd6e786231ac6c16e590d01bc6eb" name="acf63dd6e786231ac6c16e590d01bc6eb"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acf63dd6e786231ac6c16e590d01bc6eb">&#9670;&#160;</a></span>m_updates</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::m_updates = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a8df9f55e0af1a16ee56678a109f08920" name="a8df9f55e0af1a16ee56678a109f08920"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8df9f55e0af1a16ee56678a109f08920">&#9670;&#160;</a></span>m_window</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::deque&lt;size_t&gt; gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::m_window</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="abf4814a4423cfbe816b07d5eea4efea4" name="abf4814a4423cfbe816b07d5eea4efea4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abf4814a4423cfbe816b07d5eea4efea4">&#9670;&#160;</a></span>m_windowSize</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::m_windowSize</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/solver/strategies/triggers/<a class="el" href="engine__partitioning__trigger_8h.html">engine_partitioning_trigger.h</a></li>
+<li>src/lib/solver/strategies/triggers/<a class="el" href="engine__partitioning__trigger_8cpp.html">engine_partitioning_trigger.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger.html">trigger</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger_1_1solver.html">solver</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html">CVODE</a></li><li class="navelem"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">ConvergenceFailureTrigger</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
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+  <div class="headertitle"><div class="title">gridfire::trigger::solver::CVODE::OffDiagonalTrigger Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a3855b15459217383647ecdf12bc35775">check</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#ad0dd92f9da6c291c3bd57c0983940035">describe</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a0d3b7c1d1057f442417c2f8c2a7177c5">m_hits</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#afbd9258d65370bbc965e799c82f0e1c0">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a14b1884a9014df33a1ec90dd3433c0b9">m_misses</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#acd55d04da377c8bf4af3ea2fcf2f1918">m_resets</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#aeac341c1e854d561a29aa39ad306d5d7">m_threshold</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a4885bdcc719a0f8c8394905893739b96">m_updates</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a594893c029f044be3119118808470f7a">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a0e1ad148f9f3232992a4b16e440c249a">numMisses</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a32980aaf6d9c7632c024b4b74b1d9e70">numTriggers</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a6dc334b85ffb822880c6740dc457ea52">OffDiagonalTrigger</a>(double threshold)</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a9b782cbf033ed2023da6b2d55dcefc4e">reset</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a8b882c6ba6e267d7051031140bbb7ad6">step</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a179cb09a91d5c638d7a347137b208767">update</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a3af973e466ba62ebf1e41c608355e327">why</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html b/docs/html/classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::solver::CVODE::OffDiagonalTrigger Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Triggers when any off-diagonal Jacobian entry magnitude exceeds a threshold.  
+ <a href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#details">More...</a></p>
+
+<p><code>#include &lt;engine_partitioning_trigger.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::trigger::solver::CVODE::OffDiagonalTrigger:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger__inherit__graph.svg" width="500" height="80"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::trigger::solver::CVODE::OffDiagonalTrigger:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger__coll__graph.svg" width="500" height="80"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a6dc334b85ffb822880c6740dc457ea52" id="r_a6dc334b85ffb822880c6740dc457ea52"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a6dc334b85ffb822880c6740dc457ea52">OffDiagonalTrigger</a> (double threshold)</td></tr>
+<tr class="memdesc:a6dc334b85ffb822880c6740dc457ea52"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct with a non-negative magnitude threshold.  <br /></td></tr>
+<tr class="separator:a6dc334b85ffb822880c6740dc457ea52"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3855b15459217383647ecdf12bc35775" id="r_a3855b15459217383647ecdf12bc35775"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a3855b15459217383647ecdf12bc35775">check</a> (const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) const override</td></tr>
+<tr class="memdesc:a3855b15459217383647ecdf12bc35775"><td class="mdescLeft">&#160;</td><td class="mdescRight">Check if any off-diagonal Jacobian entry exceeds the threshold.  <br /></td></tr>
+<tr class="separator:a3855b15459217383647ecdf12bc35775"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a179cb09a91d5c638d7a347137b208767" id="r_a179cb09a91d5c638d7a347137b208767"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a179cb09a91d5c638d7a347137b208767">update</a> (const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) override</td></tr>
+<tr class="memdesc:a179cb09a91d5c638d7a347137b208767"><td class="mdescLeft">&#160;</td><td class="mdescRight">Record an update; does not mutate any Jacobian-related state.  <br /></td></tr>
+<tr class="separator:a179cb09a91d5c638d7a347137b208767"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8b882c6ba6e267d7051031140bbb7ad6" id="r_a8b882c6ba6e267d7051031140bbb7ad6"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a8b882c6ba6e267d7051031140bbb7ad6">step</a> (const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) override</td></tr>
+<tr class="memdesc:a8b882c6ba6e267d7051031140bbb7ad6"><td class="mdescLeft">&#160;</td><td class="mdescRight">similar to update but intended to be run on every step not just those where the trigger triggered  <br /></td></tr>
+<tr class="separator:a8b882c6ba6e267d7051031140bbb7ad6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9b782cbf033ed2023da6b2d55dcefc4e" id="r_a9b782cbf033ed2023da6b2d55dcefc4e"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a9b782cbf033ed2023da6b2d55dcefc4e">reset</a> () override</td></tr>
+<tr class="memdesc:a9b782cbf033ed2023da6b2d55dcefc4e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset counters to zero.  <br /></td></tr>
+<tr class="separator:a9b782cbf033ed2023da6b2d55dcefc4e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a594893c029f044be3119118808470f7a" id="r_a594893c029f044be3119118808470f7a"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a594893c029f044be3119118808470f7a">name</a> () const override</td></tr>
+<tr class="memdesc:a594893c029f044be3119118808470f7a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stable human-readable name.  <br /></td></tr>
+<tr class="separator:a594893c029f044be3119118808470f7a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3af973e466ba62ebf1e41c608355e327" id="r_a3af973e466ba62ebf1e41c608355e327"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a3af973e466ba62ebf1e41c608355e327">why</a> (const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) const override</td></tr>
+<tr class="memdesc:a3af973e466ba62ebf1e41c608355e327"><td class="mdescLeft">&#160;</td><td class="mdescRight">Structured explanation of the evaluation outcome.  <br /></td></tr>
+<tr class="separator:a3af973e466ba62ebf1e41c608355e327"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad0dd92f9da6c291c3bd57c0983940035" id="r_ad0dd92f9da6c291c3bd57c0983940035"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#ad0dd92f9da6c291c3bd57c0983940035">describe</a> () const override</td></tr>
+<tr class="memdesc:ad0dd92f9da6c291c3bd57c0983940035"><td class="mdescLeft">&#160;</td><td class="mdescRight">Textual description including configured threshold.  <br /></td></tr>
+<tr class="separator:ad0dd92f9da6c291c3bd57c0983940035"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a32980aaf6d9c7632c024b4b74b1d9e70"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of true evaluations since last reset.  <br /></td></tr>
+<tr class="separator:a32980aaf6d9c7632c024b4b74b1d9e70"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a0e1ad148f9f3232992a4b16e440c249a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of false evaluations since last reset.  <br /></td></tr>
+<tr class="separator:a0e1ad148f9f3232992a4b16e440c249a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1trigger_1_1Trigger"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1trigger_1_1Trigger')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a></td></tr>
+<tr class="memitem:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger" id="r_a2c077ccbaf4de9f7068e50144391edda"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a> ()=default</td></tr>
+<tr class="memdesc:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for polymorphic use.  <br /></td></tr>
+<tr class="separator:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:afbd9258d65370bbc965e799c82f0e1c0" id="r_afbd9258d65370bbc965e799c82f0e1c0"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#afbd9258d65370bbc965e799c82f0e1c0">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="memdesc:afbd9258d65370bbc965e799c82f0e1c0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logger used for trace/error diagnostics.  <br /></td></tr>
+<tr class="separator:afbd9258d65370bbc965e799c82f0e1c0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aeac341c1e854d561a29aa39ad306d5d7" id="r_aeac341c1e854d561a29aa39ad306d5d7"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#aeac341c1e854d561a29aa39ad306d5d7">m_threshold</a></td></tr>
+<tr class="memdesc:aeac341c1e854d561a29aa39ad306d5d7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Off-diagonal magnitude threshold (&gt;= 0).  <br /></td></tr>
+<tr class="separator:aeac341c1e854d561a29aa39ad306d5d7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr><td colspan="2"><div class="groupHeader">Diagnostics counters</div></td></tr>
+<tr class="memitem:a0d3b7c1d1057f442417c2f8c2a7177c5" id="r_a0d3b7c1d1057f442417c2f8c2a7177c5"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a0d3b7c1d1057f442417c2f8c2a7177c5">m_hits</a> = 0</td></tr>
+<tr class="separator:a0d3b7c1d1057f442417c2f8c2a7177c5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a14b1884a9014df33a1ec90dd3433c0b9" id="r_a14b1884a9014df33a1ec90dd3433c0b9"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a14b1884a9014df33a1ec90dd3433c0b9">m_misses</a> = 0</td></tr>
+<tr class="separator:a14b1884a9014df33a1ec90dd3433c0b9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4885bdcc719a0f8c8394905893739b96" id="r_a4885bdcc719a0f8c8394905893739b96"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a4885bdcc719a0f8c8394905893739b96">m_updates</a> = 0</td></tr>
+<tr class="separator:a4885bdcc719a0f8c8394905893739b96"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acd55d04da377c8bf4af3ea2fcf2f1918" id="r_acd55d04da377c8bf4af3ea2fcf2f1918"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#acd55d04da377c8bf4af3ea2fcf2f1918">m_resets</a> = 0</td></tr>
+<tr class="separator:acd55d04da377c8bf4af3ea2fcf2f1918"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Triggers when any off-diagonal Jacobian entry magnitude exceeds a threshold. </p>
+<p>Semantics:</p><ul>
+<li>Iterates over all species pairs (row != col) and queries the engine's Jacobian via ctx.engine.getJacobianMatrixEntry(row, col). If any |entry| &gt; threshold, check(ctx) returns true (short-circuits on first exceedance).</li>
+<li>update(ctx) only records an update counter; it does not cache Jacobian values.</li>
+</ul>
+<dl class="section note"><dt>Note</dt><dd>Complexity: O(S^2) per check for S species (due to dense scan).</dd></dl>
+<dl class="section user"><dt>Constraints/Errors:</dt><dd><ul>
+<li>Constructing with threshold &lt; 0 throws std::invalid_argument.</li>
+</ul>
+</dd></dl>
+<dl class="section user"><dt>See also</dt><dd><ul>
+<li><a class="el" href="engine__partitioning__trigger_8cpp.html">engine_partitioning_trigger.cpp</a> for concrete logic and trace logging. </li>
+</ul>
+</dd></dl>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a6dc334b85ffb822880c6740dc457ea52" name="a6dc334b85ffb822880c6740dc457ea52"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6dc334b85ffb822880c6740dc457ea52">&#9670;&#160;</a></span>OffDiagonalTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::trigger::solver::CVODE::OffDiagonalTrigger::OffDiagonalTrigger </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>threshold</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct with a non-negative magnitude threshold. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">threshold</td><td>Off-diagonal Jacobian magnitude threshold (&gt;= 0). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::invalid_argument</td><td>if threshold &lt; 0. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a3855b15459217383647ecdf12bc35775" name="a3855b15459217383647ecdf12bc35775"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3855b15459217383647ecdf12bc35775">&#9670;&#160;</a></span>check()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::trigger::solver::CVODE::OffDiagonalTrigger::check </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Check if any off-diagonal Jacobian entry exceeds the threshold. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html">CVODE</a> timestep context providing access to engine species and Jacobian. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if max_{i!=j} |J(i,j)| &gt; threshold; false otherwise.</dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>increments hit/miss counters and may emit trace logs. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a1579ffb1c841cda4e67990b42d400d88">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="ad0dd92f9da6c291c3bd57c0983940035" name="ad0dd92f9da6c291c3bd57c0983940035"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad0dd92f9da6c291c3bd57c0983940035">&#9670;&#160;</a></span>describe()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::trigger::solver::CVODE::OffDiagonalTrigger::describe </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Textual description including configured threshold. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a402cdd062e9479abbcca02e3d94e528f">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a594893c029f044be3119118808470f7a" name="a594893c029f044be3119118808470f7a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a594893c029f044be3119118808470f7a">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::trigger::solver::CVODE::OffDiagonalTrigger::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Stable human-readable name. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a3e5b017147f22ca0733733cd39e334b7">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a0e1ad148f9f3232992a4b16e440c249a" name="a0e1ad148f9f3232992a4b16e440c249a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0e1ad148f9f3232992a4b16e440c249a">&#9670;&#160;</a></span>numMisses()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::OffDiagonalTrigger::numMisses </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of false evaluations since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a81848e5af844795d879b6d885a2701d7">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a32980aaf6d9c7632c024b4b74b1d9e70" name="a32980aaf6d9c7632c024b4b74b1d9e70"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a32980aaf6d9c7632c024b4b74b1d9e70">&#9670;&#160;</a></span>numTriggers()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::OffDiagonalTrigger::numTriggers </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of true evaluations since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a9b782cbf033ed2023da6b2d55dcefc4e" name="a9b782cbf033ed2023da6b2d55dcefc4e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9b782cbf033ed2023da6b2d55dcefc4e">&#9670;&#160;</a></span>reset()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::trigger::solver::CVODE::OffDiagonalTrigger::reset </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reset counters to zero. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#af652af761675736419b961b6946c728d">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a8b882c6ba6e267d7051031140bbb7ad6" name="a8b882c6ba6e267d7051031140bbb7ad6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8b882c6ba6e267d7051031140bbb7ad6">&#9670;&#160;</a></span>step()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::trigger::solver::CVODE::OffDiagonalTrigger::step </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>similar to update but intended to be run on every step not just those where the trigger triggered </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot used to update state. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4b7ffa4d8d31e2118a8e86172be51041">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a179cb09a91d5c638d7a347137b208767" name="a179cb09a91d5c638d7a347137b208767"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a179cb09a91d5c638d7a347137b208767">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::trigger::solver::CVODE::OffDiagonalTrigger::update </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Record an update; does not mutate any Jacobian-related state. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html">CVODE</a> timestep context (unused except for symmetry with interface). </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a048899795704f68668960454d118a6fc">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a3af973e466ba62ebf1e41c608355e327" name="a3af973e466ba62ebf1e41c608355e327"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3af973e466ba62ebf1e41c608355e327">&#9670;&#160;</a></span>why()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> gridfire::trigger::solver::CVODE::OffDiagonalTrigger::why </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Structured explanation of the evaluation outcome. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html">CVODE</a> timestep context. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a9f020d828ca36a601b780566cc3377ea">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a0d3b7c1d1057f442417c2f8c2a7177c5" name="a0d3b7c1d1057f442417c2f8c2a7177c5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0d3b7c1d1057f442417c2f8c2a7177c5">&#9670;&#160;</a></span>m_hits</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_hits = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="afbd9258d65370bbc965e799c82f0e1c0" name="afbd9258d65370bbc965e799c82f0e1c0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afbd9258d65370bbc965e799c82f0e1c0">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logger used for trace/error diagnostics. </p>
+
+</div>
+</div>
+<a id="a14b1884a9014df33a1ec90dd3433c0b9" name="a14b1884a9014df33a1ec90dd3433c0b9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a14b1884a9014df33a1ec90dd3433c0b9">&#9670;&#160;</a></span>m_misses</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_misses = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="acd55d04da377c8bf4af3ea2fcf2f1918" name="acd55d04da377c8bf4af3ea2fcf2f1918"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#acd55d04da377c8bf4af3ea2fcf2f1918">&#9670;&#160;</a></span>m_resets</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_resets = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aeac341c1e854d561a29aa39ad306d5d7" name="aeac341c1e854d561a29aa39ad306d5d7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aeac341c1e854d561a29aa39ad306d5d7">&#9670;&#160;</a></span>m_threshold</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_threshold</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
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+</div><div class="memdoc">
+
+<p>Off-diagonal magnitude threshold (&gt;= 0). </p>
+
+</div>
+</div>
+<a id="a4885bdcc719a0f8c8394905893739b96" name="a4885bdcc719a0f8c8394905893739b96"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4885bdcc719a0f8c8394905893739b96">&#9670;&#160;</a></span>m_updates</h2>
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+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
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+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::OffDiagonalTrigger::m_updates = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
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+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/solver/strategies/triggers/<a class="el" href="engine__partitioning__trigger_8h.html">engine_partitioning_trigger.h</a></li>
+<li>src/lib/solver/strategies/triggers/<a class="el" href="engine__partitioning__trigger_8cpp.html">engine_partitioning_trigger.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger.html">trigger</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger_1_1solver.html">solver</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html">CVODE</a></li><li class="navelem"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">OffDiagonalTrigger</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
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diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger-members.html b/docs/html/classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger-members.html
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::trigger::solver::CVODE::SimulationTimeTrigger Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a50df7fefee167390522aa258fa6ee960">check</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a0f412b8f788ab7990e353d62ab7d9a16">describe</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a2b1b4a9ef137e76d39e7a7dcb6cf725d">m_hits</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#ab6215873390f6bedab5c9f83b990b5e0">m_interval</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a51ac3899010c2790fc98801ffba9407e">m_last_trigger_time</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#ab93cb25bbebb159a8608a737bd972abd">m_last_trigger_time_delta</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a16e9b87a8abb05bb6b5410903eb49e91">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a00ede9fff51a8318913fd2ed504c1007">m_misses</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a3004a10bb89ecd7b2ba6103c9f5d4b96">m_resets</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#ab80799eb7c80b3b20c1a7e7f9e1f5030">m_updates</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a87fc9fe6bd8762f148c858452ec30043">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a273eb8a3e80d1235d2b3f252e55c5b50">numMisses</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a34d285584ea96f71b99eefad8c738296">numTriggers</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#af4034fa431e6c88fd05c50cce31b2fa0">reset</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a235f84a37370a1ca2226fb881b4051c7">SimulationTimeTrigger</a>(double interval)</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#aafc7f40bde2c78f4d100b6f9da771831">step</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a468bf58f66417493501c59d7a8aabc98">update</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a9dfab0b765d3a4c362cecd860d59f58a">why</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html b/docs/html/classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::solver::CVODE::SimulationTimeTrigger Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Triggers when the current simulation time advances by at least a fixed interval.  
+ <a href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#details">More...</a></p>
+
+<p><code>#include &lt;engine_partitioning_trigger.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::trigger::solver::CVODE::SimulationTimeTrigger:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger__inherit__graph.svg" width="526" height="80"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::trigger::solver::CVODE::SimulationTimeTrigger:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger__coll__graph.svg" width="526" height="80"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a235f84a37370a1ca2226fb881b4051c7" id="r_a235f84a37370a1ca2226fb881b4051c7"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a235f84a37370a1ca2226fb881b4051c7">SimulationTimeTrigger</a> (double interval)</td></tr>
+<tr class="memdesc:a235f84a37370a1ca2226fb881b4051c7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct with a positive time interval between firings.  <br /></td></tr>
+<tr class="separator:a235f84a37370a1ca2226fb881b4051c7"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a50df7fefee167390522aa258fa6ee960" id="r_a50df7fefee167390522aa258fa6ee960"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a50df7fefee167390522aa258fa6ee960">check</a> (const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) const override</td></tr>
+<tr class="memdesc:a50df7fefee167390522aa258fa6ee960"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate whether enough simulated time has elapsed since the last trigger.  <br /></td></tr>
+<tr class="separator:a50df7fefee167390522aa258fa6ee960"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a468bf58f66417493501c59d7a8aabc98" id="r_a468bf58f66417493501c59d7a8aabc98"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a468bf58f66417493501c59d7a8aabc98">update</a> (const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) override</td></tr>
+<tr class="memdesc:a468bf58f66417493501c59d7a8aabc98"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update internal state; if check(ctx) is true, advance last_trigger_time.  <br /></td></tr>
+<tr class="separator:a468bf58f66417493501c59d7a8aabc98"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aafc7f40bde2c78f4d100b6f9da771831" id="r_aafc7f40bde2c78f4d100b6f9da771831"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#aafc7f40bde2c78f4d100b6f9da771831">step</a> (const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) override</td></tr>
+<tr class="memdesc:aafc7f40bde2c78f4d100b6f9da771831"><td class="mdescLeft">&#160;</td><td class="mdescRight">similar to update but intended to be run on every step not just those where the trigger triggered  <br /></td></tr>
+<tr class="separator:aafc7f40bde2c78f4d100b6f9da771831"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af4034fa431e6c88fd05c50cce31b2fa0" id="r_af4034fa431e6c88fd05c50cce31b2fa0"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#af4034fa431e6c88fd05c50cce31b2fa0">reset</a> () override</td></tr>
+<tr class="memdesc:af4034fa431e6c88fd05c50cce31b2fa0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset counters and last trigger bookkeeping (time and delta) to zero.  <br /></td></tr>
+<tr class="separator:af4034fa431e6c88fd05c50cce31b2fa0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a87fc9fe6bd8762f148c858452ec30043" id="r_a87fc9fe6bd8762f148c858452ec30043"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a87fc9fe6bd8762f148c858452ec30043">name</a> () const override</td></tr>
+<tr class="memdesc:a87fc9fe6bd8762f148c858452ec30043"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stable human-readable name.  <br /></td></tr>
+<tr class="separator:a87fc9fe6bd8762f148c858452ec30043"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9dfab0b765d3a4c362cecd860d59f58a" id="r_a9dfab0b765d3a4c362cecd860d59f58a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a9dfab0b765d3a4c362cecd860d59f58a">why</a> (const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) const override</td></tr>
+<tr class="memdesc:a9dfab0b765d3a4c362cecd860d59f58a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Structured explanation of the evaluation outcome.  <br /></td></tr>
+<tr class="separator:a9dfab0b765d3a4c362cecd860d59f58a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0f412b8f788ab7990e353d62ab7d9a16" id="r_a0f412b8f788ab7990e353d62ab7d9a16"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a0f412b8f788ab7990e353d62ab7d9a16">describe</a> () const override</td></tr>
+<tr class="memdesc:a0f412b8f788ab7990e353d62ab7d9a16"><td class="mdescLeft">&#160;</td><td class="mdescRight">Textual description including configured interval.  <br /></td></tr>
+<tr class="separator:a0f412b8f788ab7990e353d62ab7d9a16"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a34d285584ea96f71b99eefad8c738296" id="r_a34d285584ea96f71b99eefad8c738296"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a34d285584ea96f71b99eefad8c738296">numTriggers</a> () const override</td></tr>
+<tr class="memdesc:a34d285584ea96f71b99eefad8c738296"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of true evaluations since last reset.  <br /></td></tr>
+<tr class="separator:a34d285584ea96f71b99eefad8c738296"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a273eb8a3e80d1235d2b3f252e55c5b50" id="r_a273eb8a3e80d1235d2b3f252e55c5b50"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a273eb8a3e80d1235d2b3f252e55c5b50">numMisses</a> () const override</td></tr>
+<tr class="memdesc:a273eb8a3e80d1235d2b3f252e55c5b50"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of false evaluations since last reset.  <br /></td></tr>
+<tr class="separator:a273eb8a3e80d1235d2b3f252e55c5b50"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1trigger_1_1Trigger"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1trigger_1_1Trigger')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a></td></tr>
+<tr class="memitem:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger" id="r_a2c077ccbaf4de9f7068e50144391edda"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a> ()=default</td></tr>
+<tr class="memdesc:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for polymorphic use.  <br /></td></tr>
+<tr class="separator:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a16e9b87a8abb05bb6b5410903eb49e91" id="r_a16e9b87a8abb05bb6b5410903eb49e91"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a16e9b87a8abb05bb6b5410903eb49e91">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="memdesc:a16e9b87a8abb05bb6b5410903eb49e91"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logger used for trace/error diagnostics.  <br /></td></tr>
+<tr class="separator:a16e9b87a8abb05bb6b5410903eb49e91"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab6215873390f6bedab5c9f83b990b5e0" id="r_ab6215873390f6bedab5c9f83b990b5e0"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#ab6215873390f6bedab5c9f83b990b5e0">m_interval</a></td></tr>
+<tr class="memdesc:ab6215873390f6bedab5c9f83b990b5e0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Required time interval between successive triggers.  <br /></td></tr>
+<tr class="separator:ab6215873390f6bedab5c9f83b990b5e0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a51ac3899010c2790fc98801ffba9407e" id="r_a51ac3899010c2790fc98801ffba9407e"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a51ac3899010c2790fc98801ffba9407e">m_last_trigger_time</a> = 0.0</td></tr>
+<tr class="memdesc:a51ac3899010c2790fc98801ffba9407e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Time at which the trigger last fired; initialized to 0.  <br /></td></tr>
+<tr class="separator:a51ac3899010c2790fc98801ffba9407e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab93cb25bbebb159a8608a737bd972abd" id="r_ab93cb25bbebb159a8608a737bd972abd"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#ab93cb25bbebb159a8608a737bd972abd">m_last_trigger_time_delta</a> = 0.0</td></tr>
+<tr class="memdesc:ab93cb25bbebb159a8608a737bd972abd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Overshoot relative to interval at the last firing; for diagnostics.  <br /></td></tr>
+<tr class="separator:ab93cb25bbebb159a8608a737bd972abd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr><td colspan="2"><div class="groupHeader">Diagnostics counters</div></td></tr>
+<tr class="memitem:a2b1b4a9ef137e76d39e7a7dcb6cf725d" id="r_a2b1b4a9ef137e76d39e7a7dcb6cf725d"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a2b1b4a9ef137e76d39e7a7dcb6cf725d">m_hits</a> = 0</td></tr>
+<tr class="separator:a2b1b4a9ef137e76d39e7a7dcb6cf725d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a00ede9fff51a8318913fd2ed504c1007" id="r_a00ede9fff51a8318913fd2ed504c1007"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a00ede9fff51a8318913fd2ed504c1007">m_misses</a> = 0</td></tr>
+<tr class="separator:a00ede9fff51a8318913fd2ed504c1007"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab80799eb7c80b3b20c1a7e7f9e1f5030" id="r_ab80799eb7c80b3b20c1a7e7f9e1f5030"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#ab80799eb7c80b3b20c1a7e7f9e1f5030">m_updates</a> = 0</td></tr>
+<tr class="separator:ab80799eb7c80b3b20c1a7e7f9e1f5030"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3004a10bb89ecd7b2ba6103c9f5d4b96" id="r_a3004a10bb89ecd7b2ba6103c9f5d4b96"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a3004a10bb89ecd7b2ba6103c9f5d4b96">m_resets</a> = 0</td></tr>
+<tr class="separator:a3004a10bb89ecd7b2ba6103c9f5d4b96"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Triggers when the current simulation time advances by at least a fixed interval. </p>
+<ul>
+<li>check(ctx) returns true when (ctx.t - last_trigger_time) &gt;= interval.</li>
+<li>update(ctx) will, if check(ctx) is true, record ctx.t as the new last_trigger_time and store a small delta relative to the configured interval (for diagnostics/logging).</li>
+<li>Counters (hits/misses/updates/resets) are maintained for diagnostics; they are mutable to allow updates from const <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a50df7fefee167390522aa258fa6ee960" title="Evaluate whether enough simulated time has elapsed since the last trigger.">check()</a>.</li>
+</ul>
+<dl class="section user"><dt>Constraints/Errors:</dt><dd><ul>
+<li>Constructing with a non-positive interval throws std::invalid_argument.</li>
+</ul>
+</dd></dl>
+<dl class="section note"><dt>Note</dt><dd>Thread-safety: not thread-safe; intended for single-threaded trigger evaluation.</dd></dl>
+<p>See also: <a class="el" href="engine__partitioning__trigger_8cpp.html">engine_partitioning_trigger.cpp</a> for the concrete logic and logging. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a235f84a37370a1ca2226fb881b4051c7" name="a235f84a37370a1ca2226fb881b4051c7"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a235f84a37370a1ca2226fb881b4051c7">&#9670;&#160;</a></span>SimulationTimeTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::trigger::solver::CVODE::SimulationTimeTrigger::SimulationTimeTrigger </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>interval</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct with a positive time interval between firings. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">interval</td><td>Strictly positive time interval (simulation units) between triggers. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::invalid_argument</td><td>if interval &lt;= 0. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a50df7fefee167390522aa258fa6ee960" name="a50df7fefee167390522aa258fa6ee960"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a50df7fefee167390522aa258fa6ee960">&#9670;&#160;</a></span>check()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::trigger::solver::CVODE::SimulationTimeTrigger::check </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate whether enough simulated time has elapsed since the last trigger. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html">CVODE</a> timestep context providing the current simulation time (ctx.t). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if (ctx.t - last_trigger_time) &gt;= interval; false otherwise.</dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>increments hit/miss counters and may emit trace logs. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a1579ffb1c841cda4e67990b42d400d88">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a0f412b8f788ab7990e353d62ab7d9a16" name="a0f412b8f788ab7990e353d62ab7d9a16"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0f412b8f788ab7990e353d62ab7d9a16">&#9670;&#160;</a></span>describe()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::trigger::solver::CVODE::SimulationTimeTrigger::describe </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Textual description including configured interval. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a402cdd062e9479abbcca02e3d94e528f">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a87fc9fe6bd8762f148c858452ec30043" name="a87fc9fe6bd8762f148c858452ec30043"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a87fc9fe6bd8762f148c858452ec30043">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::trigger::solver::CVODE::SimulationTimeTrigger::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Stable human-readable name. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a3e5b017147f22ca0733733cd39e334b7">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a273eb8a3e80d1235d2b3f252e55c5b50" name="a273eb8a3e80d1235d2b3f252e55c5b50"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a273eb8a3e80d1235d2b3f252e55c5b50">&#9670;&#160;</a></span>numMisses()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::SimulationTimeTrigger::numMisses </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of false evaluations since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a81848e5af844795d879b6d885a2701d7">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a34d285584ea96f71b99eefad8c738296" name="a34d285584ea96f71b99eefad8c738296"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a34d285584ea96f71b99eefad8c738296">&#9670;&#160;</a></span>numTriggers()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::SimulationTimeTrigger::numTriggers </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of true evaluations since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="af4034fa431e6c88fd05c50cce31b2fa0" name="af4034fa431e6c88fd05c50cce31b2fa0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af4034fa431e6c88fd05c50cce31b2fa0">&#9670;&#160;</a></span>reset()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::trigger::solver::CVODE::SimulationTimeTrigger::reset </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reset counters and last trigger bookkeeping (time and delta) to zero. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#af652af761675736419b961b6946c728d">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="aafc7f40bde2c78f4d100b6f9da771831" name="aafc7f40bde2c78f4d100b6f9da771831"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aafc7f40bde2c78f4d100b6f9da771831">&#9670;&#160;</a></span>step()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::trigger::solver::CVODE::SimulationTimeTrigger::step </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>similar to update but intended to be run on every step not just those where the trigger triggered </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot used to update state. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4b7ffa4d8d31e2118a8e86172be51041">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a468bf58f66417493501c59d7a8aabc98" name="a468bf58f66417493501c59d7a8aabc98"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a468bf58f66417493501c59d7a8aabc98">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::trigger::solver::CVODE::SimulationTimeTrigger::update </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Update internal state; if check(ctx) is true, advance last_trigger_time. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html">CVODE</a> timestep context.</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section note"><dt>Note</dt><dd><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a468bf58f66417493501c59d7a8aabc98" title="Update internal state; if check(ctx) is true, advance last_trigger_time.">update()</a> calls check(ctx) and, on success, records the overshoot delta (ctx.t - last_trigger_time) - interval for diagnostics. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a048899795704f68668960454d118a6fc">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a9dfab0b765d3a4c362cecd860d59f58a" name="a9dfab0b765d3a4c362cecd860d59f58a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9dfab0b765d3a4c362cecd860d59f58a">&#9670;&#160;</a></span>why()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> gridfire::trigger::solver::CVODE::SimulationTimeTrigger::why </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Structured explanation of the evaluation outcome. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html">CVODE</a> timestep context. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> including name, value, and description. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a9f020d828ca36a601b780566cc3377ea">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a2b1b4a9ef137e76d39e7a7dcb6cf725d" name="a2b1b4a9ef137e76d39e7a7dcb6cf725d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2b1b4a9ef137e76d39e7a7dcb6cf725d">&#9670;&#160;</a></span>m_hits</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_hits = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab6215873390f6bedab5c9f83b990b5e0" name="ab6215873390f6bedab5c9f83b990b5e0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab6215873390f6bedab5c9f83b990b5e0">&#9670;&#160;</a></span>m_interval</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_interval</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Required time interval between successive triggers. </p>
+
+</div>
+</div>
+<a id="a51ac3899010c2790fc98801ffba9407e" name="a51ac3899010c2790fc98801ffba9407e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a51ac3899010c2790fc98801ffba9407e">&#9670;&#160;</a></span>m_last_trigger_time</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_last_trigger_time = 0.0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Time at which the trigger last fired; initialized to 0. </p>
+
+</div>
+</div>
+<a id="ab93cb25bbebb159a8608a737bd972abd" name="ab93cb25bbebb159a8608a737bd972abd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab93cb25bbebb159a8608a737bd972abd">&#9670;&#160;</a></span>m_last_trigger_time_delta</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_last_trigger_time_delta = 0.0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
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+</div><div class="memdoc">
+
+<p>Overshoot relative to interval at the last firing; for diagnostics. </p>
+
+</div>
+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#a16e9b87a8abb05bb6b5410903eb49e91">&#9670;&#160;</a></span>m_logger</h2>
+
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+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logger used for trace/error diagnostics. </p>
+
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+<h2 class="memtitle"><span class="permalink"><a href="#a00ede9fff51a8318913fd2ed504c1007">&#9670;&#160;</a></span>m_misses</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_misses = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
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+
+</div>
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+<a id="a3004a10bb89ecd7b2ba6103c9f5d4b96" name="a3004a10bb89ecd7b2ba6103c9f5d4b96"></a>
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+<div class="memitem">
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+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_resets = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
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+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab80799eb7c80b3b20c1a7e7f9e1f5030" name="ab80799eb7c80b3b20c1a7e7f9e1f5030"></a>
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+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::SimulationTimeTrigger::m_updates = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
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+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/solver/strategies/triggers/<a class="el" href="engine__partitioning__trigger_8h.html">engine_partitioning_trigger.h</a></li>
+<li>src/lib/solver/strategies/triggers/<a class="el" href="engine__partitioning__trigger_8cpp.html">engine_partitioning_trigger.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
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+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger.html">trigger</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger_1_1solver.html">solver</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html">CVODE</a></li><li class="navelem"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">SimulationTimeTrigger</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+  <div class="headertitle"><div class="title">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a04598611b0807cad395bdd2fbc41a6c2">check</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a8ba5a942bb61347851030d1eb6bbaa74">describe</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#aff23db33140aa6a5a2ad36eda77b833d">m_hits</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#abe902b2a42a6451f64497e075b0e0b25">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a021c760717efef3fc3b415dee6d4840b">m_misses</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#aa4162916f562b4d7ea0205d6f3e6f917">m_relative</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#ad4cc7113574f71905bc93cc40024b4bd">m_resets</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#ab7d86e5c89a848cf238141393fe3a8de">m_threshold</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#ae18e08a0bd72b68605d64e4d84355f79">m_timestep_window</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a25f6ac369c590a8370270bdc70545171">m_updates</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">mutable</span><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#aa03c13813065f720cf698c240f07d559">m_windowSize</a></td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a290e5643eea08726d2fd44a1cd5617d0">name</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a94bb1de08a5ff55e1874f595f8c8965c">numMisses</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#ad2a7c2567b100f97a024f65818ecefed">numTriggers</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a0fe6af73b11b820561bd4e5552890d4e">reset</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a9723e389aeba05fdb3d4fd1dcc1ba07d">step</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a171e6dee7f7d8275b3e8875eaeb0850d">TimestepCollapseTrigger</a>(double threshold, bool relative)</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#ae47a4f822f92774f6dc780ae74f12066">TimestepCollapseTrigger</a>(double threshold, bool relative, size_t windowSize)</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#af6bff6a484e8729445c26620b489665d">update</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a22d8bc7aacbc388108225c26158e918c">why</a>(const gridfire::solver::CVODESolverStrategy::TimestepContext &amp;ctx) const override</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
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diff --git a/docs/html/classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html b/docs/html/classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html
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+<div id="titlearea">
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger Class Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Triggers when the timestep deviates from its recent average beyond a threshold.  
+ <a href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#details">More...</a></p>
+
+<p><code>#include &lt;engine_partitioning_trigger.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::trigger::solver::CVODE::TimestepCollapseTrigger:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger__inherit__graph.svg" width="540" height="80"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::trigger::solver::CVODE::TimestepCollapseTrigger:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger__coll__graph.svg" width="100%" height="398"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a171e6dee7f7d8275b3e8875eaeb0850d" id="r_a171e6dee7f7d8275b3e8875eaeb0850d"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a171e6dee7f7d8275b3e8875eaeb0850d">TimestepCollapseTrigger</a> (double threshold, bool relative)</td></tr>
+<tr class="memdesc:a171e6dee7f7d8275b3e8875eaeb0850d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct with threshold and relative/absolute mode; window size defaults to 1.  <br /></td></tr>
+<tr class="separator:a171e6dee7f7d8275b3e8875eaeb0850d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:ae47a4f822f92774f6dc780ae74f12066"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct with threshold, mode, and window size.  <br /></td></tr>
+<tr class="separator:ae47a4f822f92774f6dc780ae74f12066"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a04598611b0807cad395bdd2fbc41a6c2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Evaluate whether the current dt deviates sufficiently from recent average.  <br /></td></tr>
+<tr class="separator:a04598611b0807cad395bdd2fbc41a6c2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af6bff6a484e8729445c26620b489665d" id="r_af6bff6a484e8729445c26620b489665d"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#af6bff6a484e8729445c26620b489665d">update</a> (const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) override</td></tr>
+<tr class="memdesc:af6bff6a484e8729445c26620b489665d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Update sliding window with the most recent dt and increment update counter.  <br /></td></tr>
+<tr class="separator:af6bff6a484e8729445c26620b489665d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9723e389aeba05fdb3d4fd1dcc1ba07d" id="r_a9723e389aeba05fdb3d4fd1dcc1ba07d"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a9723e389aeba05fdb3d4fd1dcc1ba07d">step</a> (const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) override</td></tr>
+<tr class="memdesc:a9723e389aeba05fdb3d4fd1dcc1ba07d"><td class="mdescLeft">&#160;</td><td class="mdescRight">similar to update but intended to be run on every step not just those where the trigger triggered  <br /></td></tr>
+<tr class="separator:a9723e389aeba05fdb3d4fd1dcc1ba07d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a0fe6af73b11b820561bd4e5552890d4e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reset counters and clear the dt window.  <br /></td></tr>
+<tr class="separator:a0fe6af73b11b820561bd4e5552890d4e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a290e5643eea08726d2fd44a1cd5617d0" id="r_a290e5643eea08726d2fd44a1cd5617d0"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a290e5643eea08726d2fd44a1cd5617d0">name</a> () const override</td></tr>
+<tr class="memdesc:a290e5643eea08726d2fd44a1cd5617d0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Stable human-readable name.  <br /></td></tr>
+<tr class="separator:a290e5643eea08726d2fd44a1cd5617d0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a22d8bc7aacbc388108225c26158e918c" id="r_a22d8bc7aacbc388108225c26158e918c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a22d8bc7aacbc388108225c26158e918c">why</a> (const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;ctx) const override</td></tr>
+<tr class="memdesc:a22d8bc7aacbc388108225c26158e918c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Structured explanation of the evaluation outcome.  <br /></td></tr>
+<tr class="separator:a22d8bc7aacbc388108225c26158e918c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8ba5a942bb61347851030d1eb6bbaa74" id="r_a8ba5a942bb61347851030d1eb6bbaa74"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a8ba5a942bb61347851030d1eb6bbaa74">describe</a> () const override</td></tr>
+<tr class="memdesc:a8ba5a942bb61347851030d1eb6bbaa74"><td class="mdescLeft">&#160;</td><td class="mdescRight">Textual description including threshold, mode, and window size.  <br /></td></tr>
+<tr class="separator:a8ba5a942bb61347851030d1eb6bbaa74"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad2a7c2567b100f97a024f65818ecefed" id="r_ad2a7c2567b100f97a024f65818ecefed"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#ad2a7c2567b100f97a024f65818ecefed">numTriggers</a> () const override</td></tr>
+<tr class="memdesc:ad2a7c2567b100f97a024f65818ecefed"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of true evaluations since last reset.  <br /></td></tr>
+<tr class="separator:ad2a7c2567b100f97a024f65818ecefed"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a94bb1de08a5ff55e1874f595f8c8965c" id="r_a94bb1de08a5ff55e1874f595f8c8965c"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a94bb1de08a5ff55e1874f595f8c8965c">numMisses</a> () const override</td></tr>
+<tr class="memdesc:a94bb1de08a5ff55e1874f595f8c8965c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of false evaluations since last reset.  <br /></td></tr>
+<tr class="separator:a94bb1de08a5ff55e1874f595f8c8965c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1trigger_1_1Trigger"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1trigger_1_1Trigger')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a></td></tr>
+<tr class="memitem:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger" id="r_a2c077ccbaf4de9f7068e50144391edda"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">~Trigger</a> ()=default</td></tr>
+<tr class="memdesc:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger"><td class="mdescLeft">&#160;</td><td class="mdescRight">Virtual destructor for polymorphic use.  <br /></td></tr>
+<tr class="separator:a2c077ccbaf4de9f7068e50144391edda inherit pub_methods_classgridfire_1_1trigger_1_1Trigger"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:abe902b2a42a6451f64497e075b0e0b25" id="r_abe902b2a42a6451f64497e075b0e0b25"><td class="memItemLeft" align="right" valign="top">quill::Logger *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#abe902b2a42a6451f64497e075b0e0b25">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td></tr>
+<tr class="memdesc:abe902b2a42a6451f64497e075b0e0b25"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logger used for trace/error diagnostics.  <br /></td></tr>
+<tr class="separator:abe902b2a42a6451f64497e075b0e0b25"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab7d86e5c89a848cf238141393fe3a8de" id="r_ab7d86e5c89a848cf238141393fe3a8de"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#ab7d86e5c89a848cf238141393fe3a8de">m_threshold</a></td></tr>
+<tr class="memdesc:ab7d86e5c89a848cf238141393fe3a8de"><td class="mdescLeft">&#160;</td><td class="mdescRight">Threshold for absolute or relative deviation.  <br /></td></tr>
+<tr class="separator:ab7d86e5c89a848cf238141393fe3a8de"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa4162916f562b4d7ea0205d6f3e6f917" id="r_aa4162916f562b4d7ea0205d6f3e6f917"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#aa4162916f562b4d7ea0205d6f3e6f917">m_relative</a></td></tr>
+<tr class="memdesc:aa4162916f562b4d7ea0205d6f3e6f917"><td class="mdescLeft">&#160;</td><td class="mdescRight">When true, use relative deviation; otherwise absolute deviation.  <br /></td></tr>
+<tr class="separator:aa4162916f562b4d7ea0205d6f3e6f917"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa03c13813065f720cf698c240f07d559" id="r_aa03c13813065f720cf698c240f07d559"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#aa03c13813065f720cf698c240f07d559">m_windowSize</a></td></tr>
+<tr class="memdesc:aa03c13813065f720cf698c240f07d559"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of dt samples to maintain in the moving window.  <br /></td></tr>
+<tr class="separator:aa03c13813065f720cf698c240f07d559"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae18e08a0bd72b68605d64e4d84355f79" id="r_ae18e08a0bd72b68605d64e4d84355f79"><td class="memItemLeft" align="right" valign="top">std::deque&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#ae18e08a0bd72b68605d64e4d84355f79">m_timestep_window</a></td></tr>
+<tr class="memdesc:ae18e08a0bd72b68605d64e4d84355f79"><td class="mdescLeft">&#160;</td><td class="mdescRight">Sliding window of recent timesteps (most recent at back).  <br /></td></tr>
+<tr class="separator:ae18e08a0bd72b68605d64e4d84355f79"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr><td colspan="2"><div class="groupHeader">Diagnostics counters</div></td></tr>
+<tr class="memitem:aff23db33140aa6a5a2ad36eda77b833d" id="r_aff23db33140aa6a5a2ad36eda77b833d"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#aff23db33140aa6a5a2ad36eda77b833d">m_hits</a> = 0</td></tr>
+<tr class="separator:aff23db33140aa6a5a2ad36eda77b833d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a021c760717efef3fc3b415dee6d4840b" id="r_a021c760717efef3fc3b415dee6d4840b"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a021c760717efef3fc3b415dee6d4840b">m_misses</a> = 0</td></tr>
+<tr class="separator:a021c760717efef3fc3b415dee6d4840b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a25f6ac369c590a8370270bdc70545171" id="r_a25f6ac369c590a8370270bdc70545171"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a25f6ac369c590a8370270bdc70545171">m_updates</a> = 0</td></tr>
+<tr class="separator:a25f6ac369c590a8370270bdc70545171"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad4cc7113574f71905bc93cc40024b4bd" id="r_ad4cc7113574f71905bc93cc40024b4bd"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#ad4cc7113574f71905bc93cc40024b4bd">m_resets</a> = 0</td></tr>
+<tr class="separator:ad4cc7113574f71905bc93cc40024b4bd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Triggers when the timestep deviates from its recent average beyond a threshold. </p>
+<ul>
+<li>Maintains a sliding window of recent dt values (size = windowSize).</li>
+<li>check(ctx):<ul>
+<li>If the window is empty, returns false.</li>
+<li>Computes the arithmetic mean of values in the window and compares either:<ul>
+<li>relative: |dt - mean| / mean &gt;= threshold</li>
+<li>absolute: |dt - mean| &gt;= threshold</li>
+</ul>
+</li>
+</ul>
+</li>
+<li>update(ctx): pushes ctx.dt into the fixed-size window (dropping oldest when full).</li>
+</ul>
+<dl class="section user"><dt>Constraints/Errors:</dt><dd><ul>
+<li>threshold must be &gt;= 0.</li>
+<li>If relative==true, threshold must be in [0, 1]. Violations throw std::invalid_argument.</li>
+</ul>
+</dd></dl>
+<dl class="section note"><dt>Note</dt><dd><ul>
+<li>With windowSize==1, the mean is the most recent prior dt.</li>
+<li>Counter fields are mutable to allow updates during const <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a04598611b0807cad395bdd2fbc41a6c2" title="Evaluate whether the current dt deviates sufficiently from recent average.">check()</a>.</li>
+</ul>
+</dd></dl>
+<p>See also: <a class="el" href="engine__partitioning__trigger_8cpp.html">engine_partitioning_trigger.cpp</a> for exact logic and logging. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a171e6dee7f7d8275b3e8875eaeb0850d" name="a171e6dee7f7d8275b3e8875eaeb0850d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a171e6dee7f7d8275b3e8875eaeb0850d">&#9670;&#160;</a></span>TimestepCollapseTrigger() <span class="overload">[1/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::TimestepCollapseTrigger </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>threshold</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>relative</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct with threshold and relative/absolute mode; window size defaults to 1. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">threshold</td><td>Non-negative threshold; if relative, must be in [0, 1]. </td></tr>
+    <tr><td class="paramname">relative</td><td>If true, use relative deviation; otherwise use absolute deviation. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::invalid_argument</td><td>on invalid threshold constraints. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<a id="ae47a4f822f92774f6dc780ae74f12066" name="ae47a4f822f92774f6dc780ae74f12066"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae47a4f822f92774f6dc780ae74f12066">&#9670;&#160;</a></span>TimestepCollapseTrigger() <span class="overload">[2/2]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::TimestepCollapseTrigger </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>threshold</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>relative</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>windowSize</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">explicit</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Construct with threshold, mode, and window size. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">threshold</td><td>Non-negative threshold; if relative, must be in [0, 1]. </td></tr>
+    <tr><td class="paramname">relative</td><td>If true, use relative deviation; otherwise use absolute deviation. </td></tr>
+    <tr><td class="paramname">windowSize</td><td>Number of dt samples to average over (&gt;= 1 recommended). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="exception"><dt>Exceptions</dt><dd>
+  <table class="exception">
+    <tr><td class="paramname">std::invalid_argument</td><td>on invalid threshold constraints. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a04598611b0807cad395bdd2fbc41a6c2" name="a04598611b0807cad395bdd2fbc41a6c2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a04598611b0807cad395bdd2fbc41a6c2">&#9670;&#160;</a></span>check()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::check </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Evaluate whether the current dt deviates sufficiently from recent average. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html">CVODE</a> timestep context providing current dt. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>true if deviation exceeds the configured threshold; false otherwise.</dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>increments hit/miss counters and may emit trace logs. </dd></dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a1579ffb1c841cda4e67990b42d400d88">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a8ba5a942bb61347851030d1eb6bbaa74" name="a8ba5a942bb61347851030d1eb6bbaa74"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8ba5a942bb61347851030d1eb6bbaa74">&#9670;&#160;</a></span>describe()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::describe </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Textual description including threshold, mode, and window size. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a402cdd062e9479abbcca02e3d94e528f">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a290e5643eea08726d2fd44a1cd5617d0" name="a290e5643eea08726d2fd44a1cd5617d0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a290e5643eea08726d2fd44a1cd5617d0">&#9670;&#160;</a></span>name()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::name </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Stable human-readable name. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a3e5b017147f22ca0733733cd39e334b7">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a94bb1de08a5ff55e1874f595f8c8965c" name="a94bb1de08a5ff55e1874f595f8c8965c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a94bb1de08a5ff55e1874f595f8c8965c">&#9670;&#160;</a></span>numMisses()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::numMisses </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of false evaluations since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a81848e5af844795d879b6d885a2701d7">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="ad2a7c2567b100f97a024f65818ecefed" name="ad2a7c2567b100f97a024f65818ecefed"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad2a7c2567b100f97a024f65818ecefed">&#9670;&#160;</a></span>numTriggers()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::numTriggers </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Number of true evaluations since last reset. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a0fe6af73b11b820561bd4e5552890d4e" name="a0fe6af73b11b820561bd4e5552890d4e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0fe6af73b11b820561bd4e5552890d4e">&#9670;&#160;</a></span>reset()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::reset </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Reset counters and clear the dt window. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#af652af761675736419b961b6946c728d">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a9723e389aeba05fdb3d4fd1dcc1ba07d" name="a9723e389aeba05fdb3d4fd1dcc1ba07d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9723e389aeba05fdb3d4fd1dcc1ba07d">&#9670;&#160;</a></span>step()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::step </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>similar to update but intended to be run on every step not just those where the trigger triggered </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td>Context snapshot used to update state. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4b7ffa4d8d31e2118a8e86172be51041">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="af6bff6a484e8729445c26620b489665d" name="af6bff6a484e8729445c26620b489665d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af6bff6a484e8729445c26620b489665d">&#9670;&#160;</a></span>update()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::update </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Update sliding window with the most recent dt and increment update counter. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">ctx</td><td><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html">CVODE</a> timestep context. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a048899795704f68668960454d118a6fc">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a22d8bc7aacbc388108225c26158e918c" name="a22d8bc7aacbc388108225c26158e918c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a22d8bc7aacbc388108225c26158e918c">&#9670;&#160;</a></span>why()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::why </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Structured explanation of the evaluation outcome. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a9f020d828ca36a601b780566cc3377ea">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="aff23db33140aa6a5a2ad36eda77b833d" name="aff23db33140aa6a5a2ad36eda77b833d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aff23db33140aa6a5a2ad36eda77b833d">&#9670;&#160;</a></span>m_hits</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_hits = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="abe902b2a42a6451f64497e075b0e0b25" name="abe902b2a42a6451f64497e075b0e0b25"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abe902b2a42a6451f64497e075b0e0b25">&#9670;&#160;</a></span>m_logger</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">quill::Logger* gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_logger = fourdst::logging::LogManager::getInstance().getLogger(&quot;log&quot;)</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Logger used for trace/error diagnostics. </p>
+
+</div>
+</div>
+<a id="a021c760717efef3fc3b415dee6d4840b" name="a021c760717efef3fc3b415dee6d4840b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a021c760717efef3fc3b415dee6d4840b">&#9670;&#160;</a></span>m_misses</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_misses = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aa4162916f562b4d7ea0205d6f3e6f917" name="aa4162916f562b4d7ea0205d6f3e6f917"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa4162916f562b4d7ea0205d6f3e6f917">&#9670;&#160;</a></span>m_relative</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_relative</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>When true, use relative deviation; otherwise absolute deviation. </p>
+
+</div>
+</div>
+<a id="ad4cc7113574f71905bc93cc40024b4bd" name="ad4cc7113574f71905bc93cc40024b4bd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad4cc7113574f71905bc93cc40024b4bd">&#9670;&#160;</a></span>m_resets</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_resets = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab7d86e5c89a848cf238141393fe3a8de" name="ab7d86e5c89a848cf238141393fe3a8de"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab7d86e5c89a848cf238141393fe3a8de">&#9670;&#160;</a></span>m_threshold</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_threshold</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
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+</div><div class="memdoc">
+
+<p>Threshold for absolute or relative deviation. </p>
+
+</div>
+</div>
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+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::deque&lt;double&gt; gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_timestep_window</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
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+
+<p>Sliding window of recent timesteps (most recent at back). </p>
+
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+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_updates = 0</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">mutable</span><span class="mlabel">private</span></span>  </td>
+  </tr>
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+</div><div class="memdoc">
+
+</div>
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+<a id="aa03c13813065f720cf698c240f07d559" name="aa03c13813065f720cf698c240f07d559"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa03c13813065f720cf698c240f07d559">&#9670;&#160;</a></span>m_windowSize</h2>
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+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::m_windowSize</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
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+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following files:<ul>
+<li>src/include/gridfire/solver/strategies/triggers/<a class="el" href="engine__partitioning__trigger_8h.html">engine_partitioning_trigger.h</a></li>
+<li>src/lib/solver/strategies/triggers/<a class="el" href="engine__partitioning__trigger_8cpp.html">engine_partitioning_trigger.cpp</a></li>
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+$(document).ready(function(){initNavTree('classgridfire_1_1utils_1_1Column.html',''); initResizable(); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
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+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::utils::Column&lt; T &gt; Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1utils_1_1Column.html">gridfire::utils::Column&lt; T &gt;</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Column.html#a7d7e4f4cf6f8e03725afeb9f664321b8">Column</a>(std::string header, const std::vector&lt; T &gt; &amp;data)</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Column.html">gridfire::utils::Column&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Column.html#a5bd0ad730a684e1a8b583c5c27cca6e8">getCellData</a>(size_t rowIndex) const override</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Column.html">gridfire::utils::Column&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Column.html#ad6a4f9aee1321e90896e5f4583d7311f">getHeader</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Column.html">gridfire::utils::Column&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Column.html#a7ff9084a0486fb8b08edfe866480568b">getRowCount</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Column.html">gridfire::utils::Column&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Column.html#aaa99c4d00c3b79e37f2e73e7c6854758">m_data</a></td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Column.html">gridfire::utils::Column&lt; T &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Column.html#aaddf58469be3e3fd3bee0f4f660fe9e0">m_header</a></td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Column.html">gridfire::utils::Column&lt; T &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html#a704c1fc03271c14fc9f3da43612a1589">~ColumnBase</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html">gridfire::utils::ColumnBase</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
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+<title>GridFire: gridfire::utils::Column&lt; T &gt; Class Template Reference</title>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
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+</div>
+</div>
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+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1utils_1_1Column-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::utils::Column&lt; T &gt; Class Template Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;table_format.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::utils::Column&lt; T &gt;:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1utils_1_1Column__inherit__graph.svg" width="211" height="110"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::utils::Column&lt; T &gt;:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1utils_1_1Column__coll__graph.svg" width="343" height="214"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a7d7e4f4cf6f8e03725afeb9f664321b8" id="r_a7d7e4f4cf6f8e03725afeb9f664321b8"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1utils_1_1Column.html#a7d7e4f4cf6f8e03725afeb9f664321b8">Column</a> (std::string header, const std::vector&lt; T &gt; &amp;data)</td></tr>
+<tr class="separator:a7d7e4f4cf6f8e03725afeb9f664321b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a5bd0ad730a684e1a8b583c5c27cca6e8"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:ad6a4f9aee1321e90896e5f4583d7311f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7ff9084a0486fb8b08edfe866480568b" id="r_a7ff9084a0486fb8b08edfe866480568b"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1utils_1_1Column.html#a7ff9084a0486fb8b08edfe866480568b">getRowCount</a> () const override</td></tr>
+<tr class="separator:a7ff9084a0486fb8b08edfe866480568b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1utils_1_1ColumnBase"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1utils_1_1ColumnBase')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html">gridfire::utils::ColumnBase</a></td></tr>
+<tr class="memitem:a704c1fc03271c14fc9f3da43612a1589 inherit pub_methods_classgridfire_1_1utils_1_1ColumnBase" id="r_a704c1fc03271c14fc9f3da43612a1589"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html#a704c1fc03271c14fc9f3da43612a1589">~ColumnBase</a> ()=default</td></tr>
+<tr class="separator:a704c1fc03271c14fc9f3da43612a1589 inherit pub_methods_classgridfire_1_1utils_1_1ColumnBase"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:aaddf58469be3e3fd3bee0f4f660fe9e0" id="r_aaddf58469be3e3fd3bee0f4f660fe9e0"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1utils_1_1Column.html#aaddf58469be3e3fd3bee0f4f660fe9e0">m_header</a></td></tr>
+<tr class="separator:aaddf58469be3e3fd3bee0f4f660fe9e0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aaa99c4d00c3b79e37f2e73e7c6854758" id="r_aaa99c4d00c3b79e37f2e73e7c6854758"><td class="memItemLeft" align="right" valign="top">std::vector&lt; T &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1utils_1_1Column.html#aaa99c4d00c3b79e37f2e73e7c6854758">m_data</a></td></tr>
+<tr class="separator:aaa99c4d00c3b79e37f2e73e7c6854758"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a7d7e4f4cf6f8e03725afeb9f664321b8" name="a7d7e4f4cf6f8e03725afeb9f664321b8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7d7e4f4cf6f8e03725afeb9f664321b8">&#9670;&#160;</a></span>Column()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1utils_1_1Column.html">gridfire::utils::Column</a>&lt; T &gt;::Column </td>
+          <td>(</td>
+          <td class="paramtype">std::string&#160;</td>
+          <td class="paramname"><em>header</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; T &gt; &amp;&#160;</td>
+          <td class="paramname"><em>data</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a5bd0ad730a684e1a8b583c5c27cca6e8" name="a5bd0ad730a684e1a8b583c5c27cca6e8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5bd0ad730a684e1a8b583c5c27cca6e8">&#9670;&#160;</a></span>getCellData()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1utils_1_1Column.html">gridfire::utils::Column</a>&lt; T &gt;::getCellData </td>
+          <td>(</td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>rowIndex</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html#a5e07c8e33c96ee8095ebefbf9b75cb36">gridfire::utils::ColumnBase</a>.</p>
+
+</div>
+</div>
+<a id="ad6a4f9aee1321e90896e5f4583d7311f" name="ad6a4f9aee1321e90896e5f4583d7311f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad6a4f9aee1321e90896e5f4583d7311f">&#9670;&#160;</a></span>getHeader()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1utils_1_1Column.html">gridfire::utils::Column</a>&lt; T &gt;::getHeader </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html#a4dd5f1409d3190eab9ba07eb6e611248">gridfire::utils::ColumnBase</a>.</p>
+
+</div>
+</div>
+<a id="a7ff9084a0486fb8b08edfe866480568b" name="a7ff9084a0486fb8b08edfe866480568b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7ff9084a0486fb8b08edfe866480568b">&#9670;&#160;</a></span>getRowCount()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1utils_1_1Column.html">gridfire::utils::Column</a>&lt; T &gt;::getRowCount </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
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+
+<p>Implements <a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html#ab6e4cb14c8a0ad7b6b9ad0fbde766cba">gridfire::utils::ColumnBase</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="aaa99c4d00c3b79e37f2e73e7c6854758" name="aaa99c4d00c3b79e37f2e73e7c6854758"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaa99c4d00c3b79e37f2e73e7c6854758">&#9670;&#160;</a></span>m_data</h2>
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+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
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+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;T&gt; <a class="el" href="classgridfire_1_1utils_1_1Column.html">gridfire::utils::Column</a>&lt; T &gt;::m_data</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aaddf58469be3e3fd3bee0f4f660fe9e0" name="aaddf58469be3e3fd3bee0f4f660fe9e0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaddf58469be3e3fd3bee0f4f660fe9e0">&#9670;&#160;</a></span>m_header</h2>
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+<div class="memitem">
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+          <td class="memname">std::string <a class="el" href="classgridfire_1_1utils_1_1Column.html">gridfire::utils::Column</a>&lt; T &gt;::m_header</td>
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new file mode 100644
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--- /dev/null
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+[
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+    [ "getCellData", "classgridfire_1_1utils_1_1Column.html#a5bd0ad730a684e1a8b583c5c27cca6e8", null ],
+    [ "getHeader", "classgridfire_1_1utils_1_1Column.html#ad6a4f9aee1321e90896e5f4583d7311f", null ],
+    [ "getRowCount", "classgridfire_1_1utils_1_1Column.html#a7ff9084a0486fb8b08edfe866480568b", null ],
+    [ "m_data", "classgridfire_1_1utils_1_1Column.html#aaa99c4d00c3b79e37f2e73e7c6854758", null ],
+    [ "m_header", "classgridfire_1_1utils_1_1Column.html#aaddf58469be3e3fd3bee0f4f660fe9e0", null ]
+];
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+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html">gridfire::utils::ColumnBase</a>, including all inherited members.</p>
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+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html#a5e07c8e33c96ee8095ebefbf9b75cb36">getCellData</a>(size_t rowIndex) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html">gridfire::utils::ColumnBase</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html#a4dd5f1409d3190eab9ba07eb6e611248">getHeader</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html">gridfire::utils::ColumnBase</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html#ab6e4cb14c8a0ad7b6b9ad0fbde766cba">getRowCount</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html">gridfire::utils::ColumnBase</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html#a704c1fc03271c14fc9f3da43612a1589">~ColumnBase</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html">gridfire::utils::ColumnBase</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
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diff --git a/docs/html/classgridfire_1_1utils_1_1ColumnBase.html b/docs/html/classgridfire_1_1utils_1_1ColumnBase.html
new file mode 100644
index 00000000..c3498524
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
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+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
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+<script type="text/javascript" src="search/searchdata.js"></script>
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+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
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+ </tbody>
+</table>
+</div>
+<!-- end header part -->
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+<script type="text/javascript">
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+/* @license-end */
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+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1utils_1_1ColumnBase-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::utils::ColumnBase Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;table_format.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::utils::ColumnBase:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1utils_1_1ColumnBase__inherit__graph.svg" width="211" height="110"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
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+<tr class="separator:a704c1fc03271c14fc9f3da43612a1589"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5e07c8e33c96ee8095ebefbf9b75cb36" id="r_a5e07c8e33c96ee8095ebefbf9b75cb36"><td class="memItemLeft" align="right" valign="top">virtual std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html#a5e07c8e33c96ee8095ebefbf9b75cb36">getCellData</a> (size_t rowIndex) const =0</td></tr>
+<tr class="separator:a5e07c8e33c96ee8095ebefbf9b75cb36"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4dd5f1409d3190eab9ba07eb6e611248" id="r_a4dd5f1409d3190eab9ba07eb6e611248"><td class="memItemLeft" align="right" valign="top">virtual std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html#a4dd5f1409d3190eab9ba07eb6e611248">getHeader</a> () const =0</td></tr>
+<tr class="separator:a4dd5f1409d3190eab9ba07eb6e611248"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab6e4cb14c8a0ad7b6b9ad0fbde766cba" id="r_ab6e4cb14c8a0ad7b6b9ad0fbde766cba"><td class="memItemLeft" align="right" valign="top">virtual size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html#ab6e4cb14c8a0ad7b6b9ad0fbde766cba">getRowCount</a> () const =0</td></tr>
+<tr class="separator:ab6e4cb14c8a0ad7b6b9ad0fbde766cba"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a704c1fc03271c14fc9f3da43612a1589" name="a704c1fc03271c14fc9f3da43612a1589"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a704c1fc03271c14fc9f3da43612a1589">&#9670;&#160;</a></span>~ColumnBase()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual gridfire::utils::ColumnBase::~ColumnBase </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a5e07c8e33c96ee8095ebefbf9b75cb36" name="a5e07c8e33c96ee8095ebefbf9b75cb36"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5e07c8e33c96ee8095ebefbf9b75cb36">&#9670;&#160;</a></span>getCellData()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::string gridfire::utils::ColumnBase::getCellData </td>
+          <td>(</td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>rowIndex</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classgridfire_1_1utils_1_1Column.html#a5bd0ad730a684e1a8b583c5c27cca6e8">gridfire::utils::Column&lt; T &gt;</a>.</p>
+
+</div>
+</div>
+<a id="a4dd5f1409d3190eab9ba07eb6e611248" name="a4dd5f1409d3190eab9ba07eb6e611248"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4dd5f1409d3190eab9ba07eb6e611248">&#9670;&#160;</a></span>getHeader()</h2>
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+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual std::string gridfire::utils::ColumnBase::getHeader </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classgridfire_1_1utils_1_1Column.html#ad6a4f9aee1321e90896e5f4583d7311f">gridfire::utils::Column&lt; T &gt;</a>.</p>
+
+</div>
+</div>
+<a id="ab6e4cb14c8a0ad7b6b9ad0fbde766cba" name="ab6e4cb14c8a0ad7b6b9ad0fbde766cba"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab6e4cb14c8a0ad7b6b9ad0fbde766cba">&#9670;&#160;</a></span>getRowCount()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
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+          <td class="memname">virtual size_t gridfire::utils::ColumnBase::getRowCount </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classgridfire_1_1utils_1_1Column.html#a7ff9084a0486fb8b08edfe866480568b">gridfire::utils::Column&lt; T &gt;</a>.</p>
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/utils/<a class="el" href="table__format_8h.html">table_format.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
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diff --git a/docs/html/classgridfire_1_1utils_1_1Table-members.html b/docs/html/classgridfire_1_1utils_1_1Table-members.html
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+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.9.8"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.9.8 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
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+});
+/* @license-end */
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+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
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+      <div id="nav-sync" class="sync"></div>
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+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(document).ready(function(){initNavTree('classgridfire_1_1utils_1_1Table.html',''); initResizable(); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
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+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::utils::Table&lt; T &gt; Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table&lt; T &gt;</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html#a7977714b9c89a7de7336c6693c198af2">getColumns</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html#a2a65467f5fedef81290bd5e64aa5685e">getName</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html#ac31535d25f1c026cbb4cd64bf833a1e6">m_columns</a></td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table&lt; T &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html#a51fb3691d40941c197f536c86cf9d59a">m_name</a></td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table&lt; T &gt;</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html#afd3ddec237e460916d2245b3f52c68ad">ncols</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html#adc88ced7876f48aada9bc3cf73163567">nrows</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html#a405477a1b9ecf0f1dc84ec102cdec7b3">operator[]</a>(size_t i) const override</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html#a7b99d3e53f953afa6bc8eb0233d3c1f3">Table</a>(const std::string &amp;name, const std::vector&lt; Column&lt; T &gt; &gt; &amp;columns)</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html#af1003bb9d31eb82a13f63e3e2cdad987">Table</a>(const std::string &amp;name, const std::unordered_map&lt; std::string, std::vector&lt; T &gt; &gt; &amp;columnData)</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html#ac69280bf3caa856a1c20bbc3b219e5d3">Table</a>(const std::string &amp;name, const std::map&lt; std::string, std::vector&lt; T &gt; &gt; &amp;columnData)</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html#a97bbb21dfb837a666765ad3080a79484">Table</a>(const std::string &amp;name, const std::unordered_map&lt; fourdst::atomic::Species, std::vector&lt; T &gt; &gt; &amp;columnData)</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html#a2b49146cc60b057da1b65d6f3e12fe07">Table</a>(const std::string &amp;name, const std::map&lt; fourdst::atomic::Species, std::vector&lt; T &gt; &gt; &amp;columnData)</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html#a75503b09c879108faf597a5c93723e4a">toCSV</a>(const std::string &amp;filename) const override</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1TableBase.html#a0529d4130643358562e1c1d1f78c924f">~TableBase</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1TableBase.html">gridfire::utils::TableBase</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/classgridfire_1_1utils_1_1Table.html b/docs/html/classgridfire_1_1utils_1_1Table.html
new file mode 100644
index 00000000..976b4787
--- /dev/null
+++ b/docs/html/classgridfire_1_1utils_1_1Table.html
@@ -0,0 +1,580 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=11"/>
+<meta name="generator" content="Doxygen 1.9.8"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::utils::Table&lt; T &gt; Class Template Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.9.8 -->
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+var searchBox = new SearchBox("searchBox", "search/",'.html');
+/* @license-end */
+</script>
+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
+});
+/* @license-end */
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+<div id="main-nav"></div>
+</div><!-- top -->
+<div id="side-nav" class="ui-resizable side-nav-resizable">
+  <div id="nav-tree">
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+       class="ui-resizable-handle">
+  </div>
+</div>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
+<div id="MSearchResultsWindow">
+<div id="MSearchResults">
+<div class="SRPage">
+<div id="SRIndex">
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+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pri-attribs">Private Attributes</a> &#124;
+<a href="classgridfire_1_1utils_1_1Table-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::utils::Table&lt; T &gt; Class Template Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;table_format.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::utils::Table&lt; T &gt;:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1utils_1_1Table__inherit__graph.svg" width="195" height="110"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::utils::Table&lt; T &gt;:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1utils_1_1Table__coll__graph.svg" width="100%" height="423"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
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+<tr class="separator:a97bbb21dfb837a666765ad3080a79484"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a2b49146cc60b057da1b65d6f3e12fe07"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:afd3ddec237e460916d2245b3f52c68ad"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a7977714b9c89a7de7336c6693c198af2"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a75503b09c879108faf597a5c93723e4a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1utils_1_1TableBase"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1utils_1_1TableBase')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1utils_1_1TableBase.html">gridfire::utils::TableBase</a></td></tr>
+<tr class="memitem:a0529d4130643358562e1c1d1f78c924f inherit pub_methods_classgridfire_1_1utils_1_1TableBase" id="r_a0529d4130643358562e1c1d1f78c924f"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1utils_1_1TableBase.html#a0529d4130643358562e1c1d1f78c924f">~TableBase</a> ()=default</td></tr>
+<tr class="separator:a0529d4130643358562e1c1d1f78c924f inherit pub_methods_classgridfire_1_1utils_1_1TableBase"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
+Private Attributes</h2></td></tr>
+<tr class="memitem:a51fb3691d40941c197f536c86cf9d59a" id="r_a51fb3691d40941c197f536c86cf9d59a"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1utils_1_1Table.html#a51fb3691d40941c197f536c86cf9d59a">m_name</a></td></tr>
+<tr class="separator:a51fb3691d40941c197f536c86cf9d59a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac31535d25f1c026cbb4cd64bf833a1e6" id="r_ac31535d25f1c026cbb4cd64bf833a1e6"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1utils_1_1Column.html">Column</a>&lt; T &gt; &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1utils_1_1Table.html#ac31535d25f1c026cbb4cd64bf833a1e6">m_columns</a></td></tr>
+<tr class="separator:ac31535d25f1c026cbb4cd64bf833a1e6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a7b99d3e53f953afa6bc8eb0233d3c1f3" name="a7b99d3e53f953afa6bc8eb0233d3c1f3"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7b99d3e53f953afa6bc8eb0233d3c1f3">&#9670;&#160;</a></span>Table() <span class="overload">[1/5]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table</a>&lt; T &gt;::Table </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>name</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; <a class="el" href="classgridfire_1_1utils_1_1Column.html">Column</a>&lt; T &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>columns</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#af1003bb9d31eb82a13f63e3e2cdad987">&#9670;&#160;</a></span>Table() <span class="overload">[2/5]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table</a>&lt; T &gt;::Table </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>name</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; std::string, std::vector&lt; T &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>columnData</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#ac69280bf3caa856a1c20bbc3b219e5d3">&#9670;&#160;</a></span>Table() <span class="overload">[3/5]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table</a>&lt; T &gt;::Table </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>name</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::map&lt; std::string, std::vector&lt; T &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>columnData</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a97bbb21dfb837a666765ad3080a79484" name="a97bbb21dfb837a666765ad3080a79484"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a97bbb21dfb837a666765ad3080a79484">&#9670;&#160;</a></span>Table() <span class="overload">[4/5]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table</a>&lt; T &gt;::Table </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>name</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::unordered_map&lt; fourdst::atomic::Species, std::vector&lt; T &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>columnData</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a2b49146cc60b057da1b65d6f3e12fe07" name="a2b49146cc60b057da1b65d6f3e12fe07"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2b49146cc60b057da1b65d6f3e12fe07">&#9670;&#160;</a></span>Table() <span class="overload">[5/5]</span></h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table</a>&lt; T &gt;::Table </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>name</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::map&lt; fourdst::atomic::Species, std::vector&lt; T &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>columnData</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a7977714b9c89a7de7336c6693c198af2" name="a7977714b9c89a7de7336c6693c198af2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7977714b9c89a7de7336c6693c198af2">&#9670;&#160;</a></span>getColumns()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html">ColumnBase</a> &gt; &gt; <a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table</a>&lt; T &gt;::getColumns </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
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+<p>Reimplemented from <a class="el" href="classgridfire_1_1utils_1_1TableBase.html#a46d43ed8de12755d7a57af57db29cda8">gridfire::utils::TableBase</a>.</p>
+
+</div>
+</div>
+<a id="a2a65467f5fedef81290bd5e64aa5685e" name="a2a65467f5fedef81290bd5e64aa5685e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2a65467f5fedef81290bd5e64aa5685e">&#9670;&#160;</a></span>getName()</h2>
+
+<div class="memitem">
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+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table</a>&lt; T &gt;::getName </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1utils_1_1TableBase.html#ac99b595b7ccfdcedd13ca48413e3373d">gridfire::utils::TableBase</a>.</p>
+
+</div>
+</div>
+<a id="afd3ddec237e460916d2245b3f52c68ad" name="afd3ddec237e460916d2245b3f52c68ad"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afd3ddec237e460916d2245b3f52c68ad">&#9670;&#160;</a></span>ncols()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table</a>&lt; T &gt;::ncols </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1utils_1_1TableBase.html#af1a64a10395240ae527c33de5555e91b">gridfire::utils::TableBase</a>.</p>
+
+</div>
+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#adc88ced7876f48aada9bc3cf73163567">&#9670;&#160;</a></span>nrows()</h2>
+
+<div class="memitem">
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+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">size_t <a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table</a>&lt; T &gt;::nrows </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1utils_1_1TableBase.html#a271f10ae6349dc5a6e37f27f1d580752">gridfire::utils::TableBase</a>.</p>
+
+</div>
+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#a405477a1b9ecf0f1dc84ec102cdec7b3">&#9670;&#160;</a></span>operator[]()</h2>
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+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html">ColumnBase</a> &amp; <a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table</a>&lt; T &gt;::operator[] </td>
+          <td>(</td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>i</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1utils_1_1TableBase.html#a33d1f279cc02a4edb66e846bb7b10077">gridfire::utils::TableBase</a>.</p>
+
+</div>
+</div>
+<a id="a75503b09c879108faf597a5c93723e4a" name="a75503b09c879108faf597a5c93723e4a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a75503b09c879108faf597a5c93723e4a">&#9670;&#160;</a></span>toCSV()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">void <a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table</a>&lt; T &gt;::toCSV </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>filename</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Implements <a class="el" href="classgridfire_1_1utils_1_1TableBase.html#acd7d5ca97586c58a6b54d54370111597">gridfire::utils::TableBase</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="ac31535d25f1c026cbb4cd64bf833a1e6" name="ac31535d25f1c026cbb4cd64bf833a1e6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac31535d25f1c026cbb4cd64bf833a1e6">&#9670;&#160;</a></span>m_columns</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;std::unique_ptr&lt;<a class="el" href="classgridfire_1_1utils_1_1Column.html">Column</a>&lt;T&gt; &gt; &gt; <a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table</a>&lt; T &gt;::m_columns</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
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+
+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#a51fb3691d40941c197f536c86cf9d59a">&#9670;&#160;</a></span>m_name</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;typename T &gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string <a class="el" href="classgridfire_1_1utils_1_1Table.html">gridfire::utils::Table</a>&lt; T &gt;::m_name</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">private</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this class was generated from the following file:<ul>
+<li>src/include/gridfire/utils/<a class="el" href="table__format_8h.html">table_format.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
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+    [ "Table", "classgridfire_1_1utils_1_1Table.html#af1003bb9d31eb82a13f63e3e2cdad987", null ],
+    [ "Table", "classgridfire_1_1utils_1_1Table.html#ac69280bf3caa856a1c20bbc3b219e5d3", null ],
+    [ "Table", "classgridfire_1_1utils_1_1Table.html#a97bbb21dfb837a666765ad3080a79484", null ],
+    [ "Table", "classgridfire_1_1utils_1_1Table.html#a2b49146cc60b057da1b65d6f3e12fe07", null ],
+    [ "getColumns", "classgridfire_1_1utils_1_1Table.html#a7977714b9c89a7de7336c6693c198af2", null ],
+    [ "getName", "classgridfire_1_1utils_1_1Table.html#a2a65467f5fedef81290bd5e64aa5685e", null ],
+    [ "ncols", "classgridfire_1_1utils_1_1Table.html#afd3ddec237e460916d2245b3f52c68ad", null ],
+    [ "nrows", "classgridfire_1_1utils_1_1Table.html#adc88ced7876f48aada9bc3cf73163567", null ],
+    [ "operator[]", "classgridfire_1_1utils_1_1Table.html#a405477a1b9ecf0f1dc84ec102cdec7b3", null ],
+    [ "toCSV", "classgridfire_1_1utils_1_1Table.html#a75503b09c879108faf597a5c93723e4a", null ],
+    [ "m_columns", "classgridfire_1_1utils_1_1Table.html#ac31535d25f1c026cbb4cd64bf833a1e6", null ],
+    [ "m_name", "classgridfire_1_1utils_1_1Table.html#a51fb3691d40941c197f536c86cf9d59a", null ]
+];
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+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
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+<meta name="generator" content="Doxygen 1.9.8"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: Member List</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.9.8 -->
+<script type="text/javascript">
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+/* @license-end */
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+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
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+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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+<div id="doc-content">
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+<div id="MSearchSelectWindow"
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+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::utils::TableBase Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="classgridfire_1_1utils_1_1TableBase.html">gridfire::utils::TableBase</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1TableBase.html#a46d43ed8de12755d7a57af57db29cda8">getColumns</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1TableBase.html">gridfire::utils::TableBase</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1TableBase.html#ac99b595b7ccfdcedd13ca48413e3373d">getName</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1TableBase.html">gridfire::utils::TableBase</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1TableBase.html#af1a64a10395240ae527c33de5555e91b">ncols</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1TableBase.html">gridfire::utils::TableBase</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1TableBase.html#a271f10ae6349dc5a6e37f27f1d580752">nrows</a>() const =0</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1TableBase.html">gridfire::utils::TableBase</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1TableBase.html#a33d1f279cc02a4edb66e846bb7b10077">operator[]</a>(size_t i) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1TableBase.html">gridfire::utils::TableBase</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1TableBase.html#acd7d5ca97586c58a6b54d54370111597">toCSV</a>(const std::string &amp;filename) const =0</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1TableBase.html">gridfire::utils::TableBase</a></td><td class="entry"><span class="mlabel">pure virtual</span></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1TableBase.html#a0529d4130643358562e1c1d1f78c924f">~TableBase</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1utils_1_1TableBase.html">gridfire::utils::TableBase</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::utils::TableBase Class Reference</title>
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+<script type="text/javascript" src="jquery.js"></script>
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+<script type="text/javascript" src="resize.js"></script>
+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="search/searchdata.js"></script>
+<script type="text/javascript" src="search/search.js"></script>
+<link href="doxygen.css" rel="stylesheet" type="text/css" />
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+<link href="doxygen-awesome-sidebar-only.css" rel="stylesheet" type="text/css"/>
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
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+<script type="text/javascript">
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+/* @license-end */
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+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(function() {
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+  $(document).ready(function() { init_search(); });
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+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="classgridfire_1_1utils_1_1TableBase-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::utils::TableBase Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;table_format.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::utils::TableBase:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="classgridfire_1_1utils_1_1TableBase__inherit__graph.svg" width="195" height="110"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
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+<h2 class="memtitle"><span class="permalink"><a href="#a0529d4130643358562e1c1d1f78c924f">&#9670;&#160;</a></span>~TableBase()</h2>
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+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">virtual gridfire::utils::TableBase::~TableBase </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span><span class="mlabel">default</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a46d43ed8de12755d7a57af57db29cda8" name="a46d43ed8de12755d7a57af57db29cda8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a46d43ed8de12755d7a57af57db29cda8">&#9670;&#160;</a></span>getColumns()</h2>
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+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
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+      <table class="memname">
+        <tr>
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+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">virtual</span></span>  </td>
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+</table>
+</div><div class="memdoc">
+
+<p>Reimplemented in <a class="el" href="classgridfire_1_1utils_1_1Table.html#a7977714b9c89a7de7336c6693c198af2">gridfire::utils::Table&lt; T &gt;</a>.</p>
+
+</div>
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+          <td class="memname">virtual std::string gridfire::utils::TableBase::getName </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
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+<p>Implemented in <a class="el" href="classgridfire_1_1utils_1_1Table.html#a2a65467f5fedef81290bd5e64aa5685e">gridfire::utils::Table&lt; T &gt;</a>.</p>
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+</div>
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+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
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+</table>
+</div><div class="memdoc">
+
+<p>Implemented in <a class="el" href="classgridfire_1_1utils_1_1Table.html#afd3ddec237e460916d2245b3f52c68ad">gridfire::utils::Table&lt; T &gt;</a>.</p>
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+</div>
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+          <td>(</td>
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+          <td> const</td>
+        </tr>
+      </table>
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+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
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+<p>Implemented in <a class="el" href="classgridfire_1_1utils_1_1Table.html#adc88ced7876f48aada9bc3cf73163567">gridfire::utils::Table&lt; T &gt;</a>.</p>
+
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+          <td class="paramtype">size_t&#160;</td>
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+      </table>
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+<span class="mlabels"><span class="mlabel">pure virtual</span></span>  </td>
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+<p>Implemented in <a class="el" href="classgridfire_1_1utils_1_1Table.html#a405477a1b9ecf0f1dc84ec102cdec7b3">gridfire::utils::Table&lt; T &gt;</a>.</p>
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+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>filename</em></td><td>)</td>
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+
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+    [ "operator[]", "classgridfire_1_1utils_1_1TableBase.html#a33d1f279cc02a4edb66e846bb7b10077", null ],
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+<div class="fragment"><div class="line"><span class="keyword">template</span>&lt;<span class="keyword">typename</span> T&gt;</div>
+<div class="line"><span class="keyword">concept </span>@123::<a class="code hl_concept" href="concept_0d123_1_1IsReactionChainPolicy.html">IsReactionChainPolicy</a> =  std::is_base_of_v&lt;gridfire::policy::ReactionChainPolicy, T&gt;</div>
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+  <div class="headertitle"><div class="title">gridfire::IsArithmeticOrAD Concept Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Concept for types allowed in engine calculations.  
+<a href="conceptgridfire_1_1IsArithmeticOrAD.html#details">More...</a></p>
+
+<p><code>#include &lt;types.h&gt;</code></p>
+<h2 class="groupheader">Concept definition</h2>
+<div class="fragment"><div class="line"><span class="keyword">template</span>&lt;<span class="keyword">typename</span> T&gt;</div>
+<div class="line"><span class="keyword">concept </span><a class="code hl_concept" href="conceptgridfire_1_1IsArithmeticOrAD.html">gridfire::IsArithmeticOrAD</a> =  std::is_same_v&lt;T, double&gt; || std::is_same_v&lt;T, CppAD::AD&lt;double&gt;&gt;</div>
+<div class="ttc" id="aconceptgridfire_1_1IsArithmeticOrAD_html"><div class="ttname"><a href="conceptgridfire_1_1IsArithmeticOrAD.html">gridfire::IsArithmeticOrAD</a></div><div class="ttdoc">Concept for types allowed in engine calculations.</div><div class="ttdef"><b>Definition</b> types.h:59</div></div>
+</div><!-- fragment --><a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Concept for types allowed in engine calculations. </p>
+<p>This concept restricts template parameters to either double or CppAD::AD&lt;double&gt;, enabling both standard and automatic differentiation types. </p>
+</div></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
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+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="conceptgridfire_1_1IsArithmeticOrAD.html">IsArithmeticOrAD</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
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diff --git a/docs/html/conceptgridfire_1_1engine_1_1EngineType.html b/docs/html/conceptgridfire_1_1engine_1_1EngineType.html
new file mode 100644
index 00000000..ea2d65d8
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+<title>GridFire: gridfire::engine::EngineType Concept Reference</title>
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+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+</table>
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::engine::EngineType Concept Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Concept for types allowed as engine bases in EngineView.  
+<a href="conceptgridfire_1_1engine_1_1EngineType.html#details">More...</a></p>
+
+<p><code>#include &lt;engine_view_abstract.h&gt;</code></p>
+<h2 class="groupheader">Concept definition</h2>
+<div class="fragment"><div class="line"><span class="keyword">template</span>&lt;<span class="keyword">typename</span> EngineT&gt;</div>
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+<div class="ttc" id="aconceptgridfire_1_1engine_1_1EngineType_html"><div class="ttname"><a href="conceptgridfire_1_1engine_1_1EngineType.html">gridfire::engine::EngineType</a></div><div class="ttdoc">Concept for types allowed as engine bases in EngineView.</div><div class="ttdef"><b>Definition</b> engine_view_abstract.h:42</div></div>
+</div><!-- fragment --><a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Concept for types allowed as engine bases in EngineView. </p>
+<p>This concept restricts template parameters to types derived from either gridfire::Engine or gridfire::DynamicEngine, as defined in <a class="el" href="engine__abstract_8h.html" title="Abstract interfaces for reaction network engines in GridFire.">engine_abstract.h</a>.</p>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::utils::Streamable Concept Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;logging.h&gt;</code></p>
+<h2 class="groupheader">Concept definition</h2>
+<div class="fragment"><div class="line"><span class="keyword">template</span>&lt;<span class="keyword">typename</span> T&gt;</div>
+<div class="line"><span class="keyword">concept </span><a class="code hl_concept" href="conceptgridfire_1_1utils_1_1Streamable.html">gridfire::utils::Streamable</a> =  <span class="keyword">requires</span>(std::ostream&amp; os, <span class="keyword">const</span> T&amp; value) {</div>
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+</div><!-- fragment --></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
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+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1utils.html">utils</a></li><li class="navelem"><a class="el" href="conceptgridfire_1_1utils_1_1Streamable.html">Streamable</a></li>
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-<script type="text/javascript" src="clipboard.js"></script>
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+<script type="text/javascript" src="resize.js"></script>
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+$(document).ready(function(){initNavTree('dir_aff155d61c3b73b9ab7dcdc908c4d49e.html',''); initResizable(); });
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class="dirtab"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a>&#160;/&#160;<a class="el" href="dir_cd87a60aa1dbf4ee960e0533fd7a9743.html">exceptions</a>&#160;/&#160;<a class="el" href="error__engine_8h.html">error_engine.h</a></td></tr><tr class="dirtab"><td class="dirtab"><a class="el" href="dir_e87948a39c0c6c3f66d9f5f967ab86bd.html">views</a>&#160;/&#160;<a class="el" href="engine__multiscale_8cpp.html">engine_multiscale.cpp</a></td><td class="dirtab"><a class="el" href="dir_3626e0c0e3c5d7812d6b277dfa4ec364.html">gridfire</a>&#160;/&#160;<a class="el" href="dir_aff155d61c3b73b9ab7dcdc908c4d49e.html">engine</a>&#160;/&#160;<a class="el" href="dir_fedd162cb41c94f7e299c266e75251fd.html">procedures</a>&#160;/&#160;<a class="el" href="priming_8h.html">priming.h</a></td></tr><tr class="dirtab"><td class="dirtab"><a class="el" href="dir_e87948a39c0c6c3f66d9f5f967ab86bd.html">views</a>&#160;/&#160;<a class="el" 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@@ -29,7 +27,7 @@
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-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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   </td>
@@ -38,24 +36,19 @@
 </table>
 </div>
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-<!-- Generated by Doxygen 1.13.2 -->
+<!-- Generated by Doxygen 1.9.8 -->
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 /* @license-end */
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-<script type="text/javascript">
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-  $(function() { init_search(); });
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@@ -73,7 +66,7 @@ $(function() {
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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index 057b39b6..2e3820ab 100644
--- a/docs/html/dir_fe7d6b610561b6ccbae8c0cd892464cf.html
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@@ -3,18 +3,16 @@
 <head>
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-<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="generator" content="Doxygen 1.9.8"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
 <title>GridFire: src/python/screening/trampoline Directory Reference</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
 <link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
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@@ -29,7 +27,7 @@
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-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
    </div>
    <div id="projectbrief">General Purpose Nuclear Network</div>
   </td>
@@ -38,24 +36,19 @@
 </table>
 </div>
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-<!-- Generated by Doxygen 1.13.2 -->
+<!-- Generated by Doxygen 1.9.8 -->
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-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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 $(function() {
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-  $(function() { init_search(); });
+  initMenu('',true,false,'search.php','Search');
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@@ -73,7 +66,7 @@ $(function() {
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+$(document).ready(function(){initNavTree('dir_fe7d6b610561b6ccbae8c0cd892464cf.html',''); initResizable(); });
 /* @license-end */
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-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
   </ul>
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+<meta name="generator" content="Doxygen 1.9.8"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
 <title>GridFire: src/include/gridfire/engine/procedures Directory Reference</title>
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 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
 <link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
 <script type="text/javascript" src="navtreedata.js"></script>
 <script type="text/javascript" src="navtree.js"></script>
-<script type="text/javascript" src="resize.js"></script>
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 <script type="text/javascript" src="search/searchdata.js"></script>
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@@ -29,7 +27,7 @@
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-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
    </div>
    <div id="projectbrief">General Purpose Nuclear Network</div>
   </td>
@@ -38,24 +36,19 @@
 </table>
 </div>
 <!-- end header part -->
-<!-- Generated by Doxygen 1.13.2 -->
+<!-- Generated by Doxygen 1.9.8 -->
 <script type="text/javascript">
 /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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-<script type="text/javascript">
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-</script>
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 <script type="text/javascript" src="menu.js"></script>
 <script type="text/javascript">
 /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
 $(function() {
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-  $(function() { init_search(); });
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
 });
 /* @license-end */
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@@ -73,7 +66,7 @@ $(function() {
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 <script type="text/javascript">
 /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
-$(function(){initNavTree('dir_fedd162cb41c94f7e299c266e75251fd.html',''); initResizable(true); });
+$(document).ready(function(){initNavTree('dir_fedd162cb41c94f7e299c266e75251fd.html',''); initResizable(); });
 /* @license-end */
 </script>
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@@ -124,7 +117,7 @@ Files</h2></td></tr>
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-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
   </ul>
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diff --git a/docs/html/doxygen.css b/docs/html/doxygen.css
index 90fba19b..8cff99eb 100644
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+++ b/docs/html/doxygen.css
@@ -1,4 +1,4 @@
-/* The standard CSS for doxygen 1.13.2*/
+/* The standard CSS for doxygen 1.9.8*/
 
 body {
     background-color: white;
@@ -15,6 +15,8 @@ body, table, div, p, dl {
 /* @group Heading Levels */
 
 .title {
+	font-weight: 400;
+	font-size: 14px;
 	font-family: Roboto,sans-serif;
 	line-height: 28px;
 	font-size: 150%;
@@ -212,13 +214,7 @@ a {
 }
 
 a:hover {
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-}
-
-a:hover > span.arrow {
-        text-decoration: none;
-        background : #F9FAFC;
+	text-decoration: underline;
 }
 
 a.el {
@@ -269,24 +265,7 @@ dl.el {
 	margin-left: -1cm;
 }
 
-ul.check {
-  list-style:none;
-  text-indent: -16px;
-  padding-left: 38px;
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-li.unchecked:before {
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-
-ol {
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-
 ul {
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   overflow: visible;
 }
 
@@ -311,62 +290,30 @@ ul.multicol {
 .fragment {
   text-align: left;
   direction: ltr;
-  overflow-x: auto;
+  overflow-x: auto; /*Fixed: fragment lines overlap floating elements*/
   overflow-y: hidden;
-  position: relative;
-  min-height: 12px;
-  margin: 10px 0px;
-  padding: 10px 10px;
-  border: 1px solid #C4CFE5;
-  border-radius: 4px;
-  background-color: #FBFCFD;
-  color: black;
 }
 
 pre.fragment {
-  word-wrap: break-word;
-  font-size:  10pt;
-  line-height: 125%;
-  font-family: 'JetBrains Mono',Consolas,Monaco,'Andale Mono','Ubuntu Mono',monospace,fixed;
+        border: 1px solid #C4CFE5;
+        background-color: #FBFCFD;
+	color: black;
+        padding: 4px 6px;
+        margin: 4px 8px 4px 2px;
+        overflow: auto;
+        word-wrap: break-word;
+        font-size:  9pt;
+        line-height: 125%;
+        font-family: 'JetBrains Mono',Consolas,Monaco,'Andale Mono','Ubuntu Mono',monospace,fixed;
+        font-size: 105%;
 }
 
-.clipboard {
-        width: 24px;
-        height: 24px;
-        right: 5px;
-        top: 5px;
-        opacity: 0;
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-.clipboard.success {
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-.fragment:hover .clipboard, .clipboard.success {
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-.clipboard:hover, .clipboard.success {
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-.clipboard:active:not([class~=success]) svg {
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-}
-
-.clipboard.success svg {
-        fill: #2EC82E;
-}
-
-.clipboard.success {
-        border-color: #2EC82E;
+div.fragment {
+	padding: 0 0 1px 0; /*Fixed: last line underline overlap border*/
+	margin: 4px 8px 4px 2px;
+	color: black;
+	background-color: #FBFCFD;
+	border: 1px solid #C4CFE5;
 }
 
 div.line {
@@ -489,6 +436,10 @@ img.light-mode-visible {
 	display: none;
 }
 
+img.formulaDsp {
+	
+}
+
 img.formulaInl, img.inline {
 	vertical-align: middle;
 }
@@ -788,25 +739,17 @@ dl.reflist dd {
 
 .paramtype {
 	white-space: nowrap;
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 }
 
 .paramname {
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-        padding-bottom: 1px;
-        margin-left: 2px;
-}
-
-.paramname em {
 	color: #602020;
-	font-style: normal;
-	margin-right: 1px;
+	white-space: nowrap;
 }
-
-.paramname .paramdefval {
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+.paramname em {
+	font-style: normal;
+}
+.paramname code {
+        line-height: 14px;
 }
 
 .params, .retval, .exception, .tparams {
@@ -1056,7 +999,7 @@ table.fieldtable {
         padding: 3px 7px 2px;
 }
 
-.fieldtable td.fieldtype, .fieldtable td.fieldname, .fieldtable td.fieldinit {
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@@ -1067,12 +1010,6 @@ table.fieldtable {
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         border-bottom: 1px solid #A8B8D9;
 }
@@ -1146,6 +1083,7 @@ table.fieldtable {
 {
 	height:32px;
 	display:block;
+	text-decoration: none;
 	outline: none;
 	color: #283A5D;
 	font-family: 'Lucida Grande',Geneva,Helvetica,Arial,sans-serif;
@@ -1234,8 +1172,7 @@ dl {
         padding: 0 0 0 0;
 }
 
-/*
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+/* dl.note, dl.warning, dl.attention, dl.pre, dl.post, dl.invariant, dl.deprecated, dl.todo, dl.test, dl.bug, dl.examples */
 dl.section {
 	margin-left: 0px;
 	padding-left: 0px;
@@ -1248,7 +1185,7 @@ dl.note {
   border-color: #D0C000;
 }
 
-dl.warning, dl.attention, dl.important {
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   padding-left: 3px;
   border-left: 4px solid;
@@ -1290,103 +1227,8 @@ dl.bug {
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-    overflow: hidden;
-    margin-left: 0;
-    border-radius: 4px;
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-
 dl.section dd {
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-
-dl.warning, dl.attention, dl.important {
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-    border-left: 8px solid #b61825;
-    color: #75070f;
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-dl.note, dl.remark {
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-    border-left: 8px solid #f3a600;
-    color: #5f4204;
-}
-
-dl.note dt, dl.remark dt {
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-
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-    color: #274a5c;
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-
-dl.todo dt {
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-
-dl.test {
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-    border-left: 8px solid #3939C4;
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-
-dl.test dt {
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-
-dl.bug dt a {
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-
-dl.bug {
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-    border-left: 8px solid #5b2bdd;
-    color: #2a0d72;
-}
-
-dl.bug dt a {
-    color: #5b2bdd !important;
-}
-
-dl.deprecated {
-    background: #ecf0f3;
-    border-left: 8px solid #5b6269;
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-}
-
-dl.deprecated dt a {
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-}
-
-dl.note dd, dl.warning dd, dl.pre dd, dl.post dd,
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-}
-
-dl.invariant, dl.pre, dl.post {
-    background: #d8f1e3;
-    border-left: 8px solid #44b86f;
-    color: #265532;
-}
-
-dl.invariant dt, dl.pre dt, dl.post dt {
-    color: #44b86f;
+	margin-bottom: 6px;
 }
 
 
@@ -1401,12 +1243,12 @@ dl.invariant dt, dl.pre dt, dl.post dt {
 	vertical-align: bottom;
 	border-collapse: separate;
 }
-
+ 
 #projectlogo img
-{
+{ 
 	border: 0px none;
 }
-
+ 
 #projectalign
 {
         vertical-align: middle;
@@ -1421,11 +1263,6 @@ dl.invariant dt, dl.pre dt, dl.post dt {
 	padding: 2px 0px;
 }
 
-#side-nav #projectname
-{
-	font-size: 130%;
-}
-
 #projectbrief
 {
 	font-size: 90%;
@@ -1532,17 +1369,20 @@ div.toc ul {
         padding: 0px;
 }
 
-div.toc li[class^='level'] {
-        margin-left: 15px;
-}
-
 div.toc li.level1 {
         margin-left: 0px;
 }
 
-div.toc li.empty {
-        background-image: none;
-        margin-top: 0px;
+div.toc li.level2 {
+        margin-left: 15px;
+}
+
+div.toc li.level3 {
+        margin-left: 15px;
+}
+
+div.toc li.level4 {
+        margin-left: 15px;
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+<path fill="none" stroke="#63b8ff" d="M414.68,-137.25C432.39,-125.86 454.23,-111.81 470.18,-101.54"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="412.37,-134.58 405.86,-142.94 416.16,-140.47 412.37,-134.58"/>
 </a>
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diff --git a/docs/html/dynsections.js b/docs/html/dynsections.js
index 3cc426a6..ee3f142f 100644
--- a/docs/html/dynsections.js
+++ b/docs/html/dynsections.js
@@ -22,177 +22,171 @@
 
  @licend  The above is the entire license notice for the JavaScript code in this file
  */
-
-function toggleVisibility(linkObj) {
-  return dynsection.toggleVisibility(linkObj);
+function toggleVisibility(linkObj)
+{
+ var base = $(linkObj).attr('id');
+ var summary = $('#'+base+'-summary');
+ var content = $('#'+base+'-content');
+ var trigger = $('#'+base+'-trigger');
+ var src=$(trigger).attr('src');
+ if (content.is(':visible')===true) {
+   content.hide();
+   summary.show();
+   $(linkObj).addClass('closed').removeClass('opened');
+   $(trigger).attr('src',src.substring(0,src.length-8)+'closed.png');
+ } else {
+   content.show();
+   summary.hide();
+   $(linkObj).removeClass('closed').addClass('opened');
+   $(trigger).attr('src',src.substring(0,src.length-10)+'open.png');
+ }
+ return false;
 }
 
-let dynsection = {
+function updateStripes()
+{
+  $('table.directory tr').
+       removeClass('even').filter(':visible:even').addClass('even');
+  $('table.directory tr').
+       removeClass('odd').filter(':visible:odd').addClass('odd');
+}
 
-  // helper function
-  updateStripes : function() {
-    $('table.directory tr').
-      removeClass('even').filter(':visible:even').addClass('even');
-    $('table.directory tr').
-      removeClass('odd').filter(':visible:odd').addClass('odd');
-  },
-
-  toggleVisibility : function(linkObj) {
-    const base = $(linkObj).attr('id');
-    const summary = $('#'+base+'-summary');
-    const content = $('#'+base+'-content');
-    const trigger = $('#'+base+'-trigger');
-    const src=$(trigger).attr('src');
-    if (content.is(':visible')===true) {
-      content.hide();
-      summary.show();
-      $(linkObj).addClass('closed').removeClass('opened');
-      $(trigger).attr('src',src.substring(0,src.length-8)+'closed.png');
+function toggleLevel(level)
+{
+  $('table.directory tr').each(function() {
+    var l = this.id.split('_').length-1;
+    var i = $('#img'+this.id.substring(3));
+    var a = $('#arr'+this.id.substring(3));
+    if (l<level+1) {
+      i.removeClass('iconfopen iconfclosed').addClass('iconfopen');
+      a.html('&#9660;');
+      $(this).show();
+    } else if (l==level+1) {
+      i.removeClass('iconfclosed iconfopen').addClass('iconfclosed');
+      a.html('&#9658;');
+      $(this).show();
     } else {
-      content.show();
-      summary.hide();
-      $(linkObj).removeClass('closed').addClass('opened');
-      $(trigger).attr('src',src.substring(0,src.length-10)+'open.png');
+      $(this).hide();
     }
-    return false;
-  },
+  });
+  updateStripes();
+}
 
-  toggleLevel : function(level) {
-    $('table.directory tr').each(function() {
-      const l = this.id.split('_').length-1;
-      const i = $('#img'+this.id.substring(3));
-      const a = $('#arr'+this.id.substring(3));
-      if (l<level+1) {
-        i.removeClass('iconfopen iconfclosed').addClass('iconfopen');
-        a.html('&#9660;');
-        $(this).show();
-      } else if (l==level+1) {
-        i.removeClass('iconfclosed iconfopen').addClass('iconfclosed');
-        a.html('&#9658;');
-        $(this).show();
-      } else {
-        $(this).hide();
-      }
+function toggleFolder(id)
+{
+  // the clicked row
+  var currentRow = $('#row_'+id);
+
+  // all rows after the clicked row
+  var rows = currentRow.nextAll("tr");
+
+  var re = new RegExp('^row_'+id+'\\d+_$', "i"); //only one sub
+
+  // only match elements AFTER this one (can't hide elements before)
+  var childRows = rows.filter(function() { return this.id.match(re); });
+
+  // first row is visible we are HIDING
+  if (childRows.filter(':first').is(':visible')===true) {
+    // replace down arrow by right arrow for current row
+    var currentRowSpans = currentRow.find("span");
+    currentRowSpans.filter(".iconfopen").removeClass("iconfopen").addClass("iconfclosed");
+    currentRowSpans.filter(".arrow").html('&#9658;');
+    rows.filter("[id^=row_"+id+"]").hide(); // hide all children
+  } else { // we are SHOWING
+    // replace right arrow by down arrow for current row
+    var currentRowSpans = currentRow.find("span");
+    currentRowSpans.filter(".iconfclosed").removeClass("iconfclosed").addClass("iconfopen");
+    currentRowSpans.filter(".arrow").html('&#9660;');
+    // replace down arrows by right arrows for child rows
+    var childRowsSpans = childRows.find("span");
+    childRowsSpans.filter(".iconfopen").removeClass("iconfopen").addClass("iconfclosed");
+    childRowsSpans.filter(".arrow").html('&#9658;');
+    childRows.show(); //show all children
+  }
+  updateStripes();
+}
+
+
+function toggleInherit(id)
+{
+  var rows = $('tr.inherit.'+id);
+  var img = $('tr.inherit_header.'+id+' img');
+  var src = $(img).attr('src');
+  if (rows.filter(':first').is(':visible')===true) {
+    rows.css('display','none');
+    $(img).attr('src',src.substring(0,src.length-8)+'closed.png');
+  } else {
+    rows.css('display','table-row'); // using show() causes jump in firefox
+    $(img).attr('src',src.substring(0,src.length-10)+'open.png');
+  }
+}
+
+var opened=true;
+// in case HTML_COLORSTYLE is LIGHT or DARK the vars will be replaced, so we write them out explicitly and use double quotes
+var plusImg  = [ "url('plus.svg')",  "url('../../plus.svg')" ];
+var minusImg = [ "url('minus.svg')", "url('../../minus.svg')" ];
+
+// toggle all folding blocks
+function codefold_toggle_all(relPath) {
+ if (opened) {
+   $('#fold_all').css('background-image',plusImg[relPath]);
+   $('div[id^=foldopen]').hide();
+   $('div[id^=foldclosed]').show();
+ } else {
+   $('#fold_all').css('background-image',minusImg[relPath]);
+   $('div[id^=foldopen]').show();
+   $('div[id^=foldclosed]').hide();
+ }
+ opened=!opened;
+}
+
+// toggle single folding block
+function codefold_toggle(id) {
+  $('#foldopen'+id).toggle();
+  $('#foldclosed'+id).toggle();
+}
+function init_codefold(relPath) {
+  $('span[class=lineno]').css(
+    {'padding-right':'4px',
+     'margin-right':'2px',
+     'display':'inline-block',
+     'width':'54px',
+     'background':'linear-gradient(#808080,#808080) no-repeat 46px/2px 100%'
     });
-    this.updateStripes();
-  },
-
-  toggleFolder : function(id) {
-    // the clicked row
-    const currentRow = $('#row_'+id);
-
-    // all rows after the clicked row
-    const rows = currentRow.nextAll("tr");
-
-    const re = new RegExp('^row_'+id+'\\d+_$', "i"); //only one sub
-
-    // only match elements AFTER this one (can't hide elements before)
-    const childRows = rows.filter(function() { return this.id.match(re); });
-
-    // first row is visible we are HIDING
-    if (childRows.filter(':first').is(':visible')===true) {
-      // replace down arrow by right arrow for current row
-      const currentRowSpans = currentRow.find("span");
-      currentRowSpans.filter(".iconfopen").removeClass("iconfopen").addClass("iconfclosed");
-      currentRowSpans.filter(".arrow").html('&#9658;');
-      rows.filter("[id^=row_"+id+"]").hide(); // hide all children
-    } else { // we are SHOWING
-      // replace right arrow by down arrow for current row
-      const currentRowSpans = currentRow.find("span");
-      currentRowSpans.filter(".iconfclosed").removeClass("iconfclosed").addClass("iconfopen");
-      currentRowSpans.filter(".arrow").html('&#9660;');
-      // replace down arrows by right arrows for child rows
-      const childRowsSpans = childRows.find("span");
-      childRowsSpans.filter(".iconfopen").removeClass("iconfopen").addClass("iconfclosed");
-      childRowsSpans.filter(".arrow").html('&#9658;');
-      childRows.show(); //show all children
+  // add global toggle to first line
+  $('span[class=lineno]:first').append('<span class="fold" id="fold_all" '+
+                                             'onclick="javascript:codefold_toggle_all('+relPath+');" '+
+                                             'style="background-image:'+minusImg[relPath]+';"></span>');
+  // add vertical lines to other rows
+  $('span[class=lineno]').not(':eq(0)').append('<span class="fold"></span>');
+  // add toggle controls to lines with fold divs
+  $('div[class=foldopen]').each(function() {
+    // extract specific id to use
+    var id    = $(this).attr('id').replace('foldopen','');
+    // extract start and end foldable fragment attributes
+    var start = $(this).attr('data-start');
+    var end   = $(this).attr('data-end');
+    // replace normal fold span with controls for the first line of a foldable fragment
+    $(this).find('span[class=fold]:first').replaceWith('<span class="fold" '+
+                                                       'onclick="javascript:codefold_toggle(\''+id+'\');" '+
+                                                       'style="background-image:'+minusImg[relPath]+';"></span>');
+    // append div for folded (closed) representation
+    $(this).after('<div id="foldclosed'+id+'" class="foldclosed" style="display:none;"></div>');
+    // extract the first line from the "open" section to represent closed content
+    var line = $(this).children().first().clone();
+    // remove any glow that might still be active on the original line
+    $(line).removeClass('glow');
+    if (start) {
+      // if line already ends with a start marker (e.g. trailing {), remove it
+      $(line).html($(line).html().replace(new RegExp('\\s*'+start+'\\s*$','g'),''));
     }
-    this.updateStripes();
-  },
+    // replace minus with plus symbol
+    $(line).find('span[class=fold]').css('background-image',plusImg[relPath]);
+    // append ellipsis
+    $(line).append(' '+start+'<a href="javascript:codefold_toggle(\''+id+'\')">&#8230;</a>'+end);
+    // insert constructed line into closed div
+    $('#foldclosed'+id).html(line);
+  });
+}
 
-  toggleInherit : function(id) {
-    const rows = $('tr.inherit.'+id);
-    const img = $('tr.inherit_header.'+id+' img');
-    const src = $(img).attr('src');
-    if (rows.filter(':first').is(':visible')===true) {
-      rows.css('display','none');
-      $(img).attr('src',src.substring(0,src.length-8)+'closed.png');
-    } else {
-      rows.css('display','table-row'); // using show() causes jump in firefox
-      $(img).attr('src',src.substring(0,src.length-10)+'open.png');
-    }
-  },
-};
-
-let codefold = {
-  opened : true,
-
-  // in case HTML_COLORSTYLE is LIGHT or DARK the vars will be replaced, so we write them out explicitly and use double quotes
-  plusImg:  [ "url('plus.svg')",  "url('../../plus.svg')" ],
-  minusImg: [ "url('minus.svg')", "url('../../minus.svg')" ],
-
-  // toggle all folding blocks
-  toggle_all : function(relPath) {
-    if (this.opened) {
-      $('#fold_all').css('background-image',this.plusImg[relPath]);
-      $('div[id^=foldopen]').hide();
-      $('div[id^=foldclosed]').show();
-    } else {
-      $('#fold_all').css('background-image',this.minusImg[relPath]);
-      $('div[id^=foldopen]').show();
-      $('div[id^=foldclosed]').hide();
-    }
-    this.opened=!this.opened;
-  },
-
-  // toggle single folding block
-  toggle : function(id) {
-    $('#foldopen'+id).toggle();
-    $('#foldclosed'+id).toggle();
-  },
-
-  init : function(relPath) {
-    $('span[class=lineno]').css({
-      'padding-right':'4px',
-      'margin-right':'2px',
-      'display':'inline-block',
-      'width':'54px',
-      'background':'linear-gradient(#808080,#808080) no-repeat 46px/2px 100%'
-    });
-    // add global toggle to first line
-    $('span[class=lineno]:first').append('<span class="fold" id="fold_all" '+
-      'onclick="javascript:codefold.toggle_all('+relPath+');" '+
-      'style="background-image:'+this.minusImg[relPath]+';"></span>');
-    // add vertical lines to other rows
-    $('span[class=lineno]').not(':eq(0)').append('<span class="fold"></span>');
-    // add toggle controls to lines with fold divs
-    $('div[class=foldopen]').each(function() {
-      // extract specific id to use
-      const id    = $(this).attr('id').replace('foldopen','');
-      // extract start and end foldable fragment attributes
-      const start = $(this).attr('data-start');
-      const end   = $(this).attr('data-end');
-      // replace normal fold span with controls for the first line of a foldable fragment
-      $(this).find('span[class=fold]:first').replaceWith('<span class="fold" '+
-                   'onclick="javascript:codefold.toggle(\''+id+'\');" '+
-                   'style="background-image:'+codefold.minusImg[relPath]+';"></span>');
-      // append div for folded (closed) representation
-      $(this).after('<div id="foldclosed'+id+'" class="foldclosed" style="display:none;"></div>');
-      // extract the first line from the "open" section to represent closed content
-      const line = $(this).children().first().clone();
-      // remove any glow that might still be active on the original line
-      $(line).removeClass('glow');
-      if (start) {
-        // if line already ends with a start marker (e.g. trailing {), remove it
-        $(line).html($(line).html().replace(new RegExp('\\s*'+start+'\\s*$','g'),''));
-      }
-      // replace minus with plus symbol
-      $(line).find('span[class=fold]').css('background-image',codefold.plusImg[relPath]);
-      // append ellipsis
-      $(line).append(' '+start+'<a href="javascript:codefold.toggle(\''+id+'\')">&#8230;</a>'+end);
-      // insert constructed line into closed div
-      $('#foldclosed'+id).html(line);
-    });
-  },
-};
 /* @license-end */
diff --git a/docs/html/engine_2bindings_8cpp.html b/docs/html/engine_2bindings_8cpp.html
index 864904a8..881734f8 100644
--- a/docs/html/engine_2bindings_8cpp.html
+++ b/docs/html/engine_2bindings_8cpp.html
@@ -3,18 +3,16 @@
 <head>
 <meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
 <meta http-equiv="X-UA-Compatible" content="IE=11"/>
-<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="generator" content="Doxygen 1.9.8"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
 <title>GridFire: src/python/engine/bindings.cpp File Reference</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
 <link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
 <script type="text/javascript" src="navtreedata.js"></script>
 <script type="text/javascript" src="navtree.js"></script>
-<script type="text/javascript" src="resize.js"></script>
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 <script type="text/javascript" src="search/search.js"></script>
@@ -29,7 +27,7 @@
  <tbody>
  <tr id="projectrow">
   <td id="projectalign">
-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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   </td>
@@ -38,24 +36,19 @@
 </table>
 </div>
 <!-- end header part -->
-<!-- Generated by Doxygen 1.13.2 -->
+<!-- Generated by Doxygen 1.9.8 -->
 <script type="text/javascript">
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 /* @license-end */
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-<script type="text/javascript">
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-  $(function() { init_search(); });
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
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@@ -73,7 +66,7 @@ $(function() {
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+$(document).ready(function(){initNavTree('engine_2bindings_8cpp.html',''); initResizable(); });
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@@ -121,40 +114,40 @@ Include dependency graph for bindings.cpp:</div>
 </div><table class="memberdecls">
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">concept &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="concept_0d109_1_1IsDynamicEngine.html">@109::IsDynamicEngine</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
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 </table>
 <h2 class="groupheader">Function Documentation</h2>
@@ -167,7 +160,8 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void abs_stype_register_dynamic_engine_bindings </td>
           <td>(</td>
-          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -184,7 +178,8 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void abs_stype_register_engine_bindings </td>
           <td>(</td>
-          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -201,7 +196,8 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void con_stype_register_graph_engine_bindings </td>
           <td>(</td>
-          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -218,7 +214,8 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_base_engine_bindings </td>
           <td>(</td>
-          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -235,7 +232,8 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_engine_bindings </td>
           <td>(</td>
-          <td class="paramtype">py::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">py::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -252,7 +250,8 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_engine_building_type_bindings </td>
           <td>(</td>
-          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -269,7 +268,8 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_engine_construction_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -286,7 +286,8 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_engine_diagnostic_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -303,7 +304,8 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_engine_priming_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -320,7 +322,8 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_engine_procedural_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -337,7 +340,8 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_engine_reporting_type_bindings </td>
           <td>(</td>
-          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -354,7 +358,8 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_engine_type_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -371,7 +376,8 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_engine_types_bindings </td>
           <td>(</td>
-          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -388,7 +394,8 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_engine_view_bindings </td>
           <td>(</td>
-          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -405,7 +412,8 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void register_jacobian_type_bindings </td>
           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
           <td></td>
         </tr>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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index 6bfe3436..599e7358 100644
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-          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
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+          <td class="paramname"><em>m</em></td><td>)</td>
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           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
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-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
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-          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
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-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
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           <td>(</td>
-          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
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           <td>(</td>
-          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
           <td></td>
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         <tr>
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           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+<title>Node28</title>
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+</g>
+<!-- Node25&#45;&gt;Node28 -->
+<g id="edge37_Node000025_Node000028" class="edge">
+<title>Node25&#45;&gt;Node28</title>
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@@ -802,80 +819,80 @@ var sectionId = 'dynsection-0';
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+<!-- Node47&#45;&gt;Node8 -->
+<g id="edge92_Node000047_Node000008" class="edge">
+<title>Node47&#45;&gt;Node8</title>
+<g id="a_edge92_Node000047_Node000008"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M730.34,-407.65C630.33,-402.91 433.87,-390.02 372.07,-360 233.81,-292.83 168.33,-95.66 150.95,-34.38"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="154.28,-33.3 148.25,-24.59 147.53,-35.16 154.28,-33.3"/>
+</a>
+</g>
+</g>
+<!-- Node47&#45;&gt;Node14 -->
+<g id="edge87_Node000047_Node000014" class="edge">
+<title>Node47&#45;&gt;Node14</title>
+<g id="a_edge87_Node000047_Node000014"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M730.38,-405.94C671.9,-400.48 581.04,-387.98 507.07,-360 454.46,-340.09 428.7,-341.82 399.07,-294 387.63,-275.53 387.52,-249.9 389.19,-232.67"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="392.67,-233.08 390.45,-222.72 385.72,-232.2 392.67,-233.08"/>
+</a>
+</g>
+</g>
+<!-- Node47&#45;&gt;Node15 -->
+<g id="edge85_Node000047_Node000015" class="edge">
+<title>Node47&#45;&gt;Node15</title>
+<g id="a_edge85_Node000047_Node000015"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M805.67,-395.79C837.4,-367.48 912.62,-303.39 985.07,-264 1059.57,-223.5 1083.25,-223.64 1164.07,-198 1203.16,-185.6 1247.47,-173.66 1283.15,-164.56"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1284.14,-167.92 1292.97,-162.07 1282.42,-161.13 1284.14,-167.92"/>
+</a>
+</g>
+</g>
+<!-- Node47&#45;&gt;Node16 -->
+<g id="edge86_Node000047_Node000016" class="edge">
+<title>Node47&#45;&gt;Node16</title>
+<g id="a_edge86_Node000047_Node000016"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M849.68,-410.34C947.02,-409.56 1145.46,-402.29 1307.07,-360 1339.03,-351.64 1343.74,-340.45 1375.07,-330 1442.16,-307.63 1486.08,-349.38 1530.07,-294 1544.81,-275.45 1527.17,-251.64 1509.65,-234.83"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1511.99,-232.23 1502.24,-228.09 1507.28,-237.41 1511.99,-232.23"/>
+</a>
+</g>
+</g>
+<!-- Node47&#45;&gt;Node34 -->
+<g id="edge89_Node000047_Node000034" class="edge">
+<title>Node47&#45;&gt;Node34</title>
+<g id="a_edge89_Node000047_Node000034"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M730.47,-407.5C679.29,-403.14 604.98,-391.4 548.07,-360 520.06,-344.55 496.01,-315.51 482.55,-296.99"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="485.29,-294.79 476.67,-288.63 479.56,-298.82 485.29,-294.79"/>
+</a>
+</g>
+</g>
+<!-- Node47&#45;&gt;Node36 -->
+<g id="edge91_Node000047_Node000036" class="edge">
+<title>Node47&#45;&gt;Node36</title>
+<g id="a_edge91_Node000047_Node000036"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M849.65,-410.66C962.02,-410.71 1212.33,-405.17 1417.07,-360 1454.56,-351.73 1460.69,-338.75 1498.07,-330 1570.17,-313.12 1773.38,-295.35 1888.62,-286.22"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1889.11,-289.7 1898.81,-285.42 1888.56,-282.72 1889.11,-289.7"/>
+</a>
+</g>
+</g>
+<!-- Node47&#45;&gt;Node48 -->
+<g id="edge83_Node000047_Node000048" class="edge">
+<title>Node47&#45;&gt;Node48</title>
+<g id="a_edge83_Node000047_Node000048"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M849.75,-406.34C966.25,-399.01 1232.07,-381.38 1455.07,-360 1468.77,-358.69 1483.32,-357.13 1497.39,-355.54"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1498,-358.99 1507.53,-354.37 1497.2,-352.03 1498,-358.99"/>
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-<g id="edge82_Node000048_Node000002" class="edge">
+<g id="edge84_Node000048_Node000002" class="edge">
 <title>Node48&#45;&gt;Node2</title>
-<g id="a_edge82_Node000048_Node000002"><a xlink:title=" ">
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-<!-- Node48&#45;&gt;Node6 -->
-<g id="edge88_Node000048_Node000006" class="edge">
-<title>Node48&#45;&gt;Node6</title>
-<g id="a_edge88_Node000048_Node000006"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M893.17,-400.54C890.41,-399.99 887.68,-399.47 885,-399 753.19,-375.74 712.46,-406.86 586,-363 478.77,-325.81 448,-310.51 368,-230 343.69,-205.54 337.22,-196.73 328,-163.5 315.62,-118.89 330.02,-95.64 366,-66.5 389.66,-47.34 420.77,-35.43 449.04,-28.05"/>
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-</g>
-<!-- Node48&#45;&gt;Node7 -->
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-<title>Node48&#45;&gt;Node7</title>
-<g id="a_edge90_Node000048_Node000007"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M893.19,-400.45C890.42,-399.93 887.68,-399.44 885,-399 716.7,-371.54 663.74,-419.93 503,-363 345.4,-307.18 316.97,-243.83 237,-97 226.26,-77.29 218.44,-52.67 213.83,-35.84"/>
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-<!-- Node48&#45;&gt;Node8 -->
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-<title>Node48&#45;&gt;Node8</title>
-<g id="a_edge92_Node000048_Node000008"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M893.19,-400.4C890.43,-399.89 887.69,-399.42 885,-399 684.11,-367.79 620.67,-430.77 429,-363 281.16,-310.72 237.11,-285.02 138,-163.5 106.09,-124.38 88.22,-66.46 80.55,-36.24"/>
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-</g>
-<!-- Node48&#45;&gt;Node14 -->
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-<title>Node48&#45;&gt;Node14</title>
-<g id="a_edge87_Node000048_Node000014"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M999.08,-404.72C1014.21,-402.56 1030.72,-400.44 1046,-399 1392.39,-366.42 1481.84,-398.01 1828,-363 2017.78,-343.81 2128.01,-441.45 2252,-296.5 2266.56,-279.48 2257.92,-252.86 2249.1,-234.88"/>
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-<!-- Node48&#45;&gt;Node15 -->
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-<title>Node48&#45;&gt;Node15</title>
-<g id="a_edge85_Node000048_Node000015"><a xlink:title=" ">
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-<!-- Node48&#45;&gt;Node16 -->
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-<title>Node48&#45;&gt;Node16</title>
-<g id="a_edge86_Node000048_Node000016"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M998.89,-405.36C1014.08,-403.19 1030.69,-400.91 1046,-399 1200.48,-379.72 1639.51,-416.23 1739,-296.5 1751.66,-281.26 1747.45,-258.48 1741.05,-240.99"/>
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-<!-- Node48&#45;&gt;Node34 -->
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-<title>Node48&#45;&gt;Node34</title>
-<g id="a_edge89_Node000048_Node000034"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M893.16,-400.59C890.41,-400.03 887.67,-399.5 885,-399 770.3,-377.71 727.54,-418.63 625,-363 598.43,-348.58 577.33,-319.81 565.49,-300.79"/>
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-<!-- Node48&#45;&gt;Node36 -->
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-<title>Node48&#45;&gt;Node36</title>
-<g id="a_edge91_Node000048_Node000036"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M999.09,-404.74C1014.21,-402.58 1030.72,-400.45 1046,-399 1128.83,-391.12 1718.21,-397.34 1794,-363 1820.61,-350.94 1842.8,-325.33 1856.62,-306.16"/>
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-<!-- Node48&#45;&gt;Node49 -->
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-<title>Node48&#45;&gt;Node49</title>
-<g id="a_edge83_Node000048_Node000049"><a xlink:title=" ">
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="1006.89,-372.96 1012.89,-364.22 1002.76,-367.31 1006.89,-372.96"/>
+<g id="a_edge84_Node000048_Node000002"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1602.94,-329.95C1621.22,-320.74 1645.33,-308.6 1665.19,-298.59"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1666.91,-301.64 1674.27,-294.01 1663.76,-295.39 1666.91,-301.64"/>
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 <!-- Node49&#45;&gt;Node2 -->
-<g id="edge84_Node000049_Node000002" class="edge">
+<g id="edge95_Node000049_Node000002" class="edge">
 <title>Node49&#45;&gt;Node2</title>
-<g id="a_edge84_Node000049_Node000002"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M1041.03,-332.11C1044.6,-324.69 1049.03,-315.47 1053.11,-306.99"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="1056.16,-308.72 1057.34,-298.19 1049.85,-305.69 1056.16,-308.72"/>
+<g id="a_edge95_Node000049_Node000002"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M473.67,-407.22C666.98,-398.12 1266.49,-369.3 1307.07,-360 1340.86,-352.25 1345.66,-339.24 1379.07,-330 1486,-300.44 1516.61,-312.05 1626.07,-294 1627.38,-293.79 1628.69,-293.57 1630.02,-293.34"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1631.04,-296.72 1640.3,-291.58 1629.86,-289.82 1631.04,-296.72"/>
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-<!-- Node50&#45;&gt;Node2 -->
-<g id="edge95_Node000050_Node000002" class="edge">
-<title>Node50&#45;&gt;Node2</title>
-<g id="a_edge95_Node000050_Node000002"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M842.77,-398.65C866.51,-381.51 907.91,-352.83 946,-332.5 967.92,-320.8 993.15,-309.82 1014.73,-301.12"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="1015.91,-304.42 1023.91,-297.48 1013.32,-297.91 1015.91,-304.42"/>
+<!-- Node49&#45;&gt;Node7 -->
+<g id="edge99_Node000049_Node000007" class="edge">
+<title>Node49&#45;&gt;Node7</title>
+<g id="a_edge99_Node000049_Node000007"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M361.55,-395.9C313.56,-379.9 245.45,-348.66 214.07,-294 191.41,-254.52 83.59,-373.87 222.07,-66 228.46,-51.8 240.91,-39.6 252.02,-30.81"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="254.2,-33.55 260.14,-24.77 250.02,-27.93 254.2,-33.55"/>
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-<!-- Node50&#45;&gt;Node7 -->
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-<title>Node50&#45;&gt;Node7</title>
-<g id="a_edge99_Node000050_Node000007"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M770.07,-414.12C611.62,-415.33 152,-407.99 152,-282.25 152,-282.25 152,-282.25 152,-147.25 152,-103.85 178.64,-58.57 195.49,-34.26"/>
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+<!-- Node49&#45;&gt;Node8 -->
+<g id="edge100_Node000049_Node000008" class="edge">
+<title>Node49&#45;&gt;Node8</title>
+<g id="a_edge100_Node000049_Node000008"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M354.4,-402.39C291.49,-390.87 195.24,-362.51 149.07,-294 91.15,-208.05 62.41,-162.56 100.07,-66 105.36,-52.44 116.25,-40.33 126.1,-31.42"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="128.62,-33.87 133.99,-24.74 124.1,-28.53 128.62,-33.87"/>
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-<!-- Node50&#45;&gt;Node8 -->
-<g id="edge100_Node000050_Node000008" class="edge">
-<title>Node50&#45;&gt;Node8</title>
-<g id="a_edge100_Node000050_Node000008"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M770.15,-413.03C636.91,-411.85 290.3,-404.73 184,-363 62.93,-315.48 74.22,-226.49 62,-97 60.73,-83.5 60.16,-79.93 62,-66.5 63.4,-56.27 66.33,-45.18 69.15,-36.03"/>
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+<!-- Node49&#45;&gt;Node14 -->
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+<title>Node49&#45;&gt;Node14</title>
+<g id="a_edge97_Node000049_Node000014"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M384.49,-395.8C369.92,-387.35 353.31,-375.28 343.07,-360 326.33,-335.01 331.43,-323.89 328.07,-294 326.59,-280.75 322.23,-275.98 328.07,-264 335.78,-248.2 351.16,-235.93 364.91,-227.5"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="366.68,-230.52 373.62,-222.51 363.2,-224.45 366.68,-230.52"/>
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-<!-- Node50&#45;&gt;Node14 -->
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-<title>Node50&#45;&gt;Node14</title>
-<g id="a_edge97_Node000050_Node000014"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M875.8,-400.38C878.57,-399.87 881.31,-399.41 884,-399 1103.39,-365.66 1160.73,-379.84 1382,-363 1405.12,-361.24 2195.98,-311.09 2214,-296.5 2231.82,-282.06 2236.81,-255.02 2238.01,-236.22"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="2241.51,-236.4 2238.3,-226.3 2234.51,-236.19 2241.51,-236.4"/>
+<!-- Node49&#45;&gt;Node20 -->
+<g id="edge101_Node000049_Node000020" class="edge">
+<title>Node49&#45;&gt;Node20</title>
+<g id="a_edge101_Node000049_Node000020"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M406.46,-395.8C392.14,-366.93 365.53,-301 399.07,-264 454.12,-203.29 701.08,-277.91 766.07,-228 785.06,-213.42 792.03,-185.42 794.59,-166.72"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="798.08,-167.04 795.66,-156.72 791.12,-166.29 798.08,-167.04"/>
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-<!-- Node50&#45;&gt;Node20 -->
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-<title>Node50&#45;&gt;Node20</title>
-<g id="a_edge101_Node000050_Node000020"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M770.06,-408.72C656.35,-397.08 405.67,-360.19 490,-266 538.47,-211.86 747.88,-257.85 815,-230 835,-221.7 833.93,-209.76 853,-199.5 899.04,-174.72 915.95,-181.62 965,-163.5 965.97,-163.14 966.96,-162.77 967.95,-162.39"/>
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+<!-- Node49&#45;&gt;Node33 -->
+<g id="edge96_Node000049_Node000033" class="edge">
+<title>Node49&#45;&gt;Node33</title>
+<g id="a_edge96_Node000049_Node000033"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M473.59,-405.37C621.45,-393.87 1005.08,-364.04 1165.21,-351.59"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1165.73,-355.06 1175.43,-350.79 1165.19,-348.08 1165.73,-355.06"/>
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-<!-- Node50&#45;&gt;Node33 -->
-<g id="edge96_Node000050_Node000033" class="edge">
-<title>Node50&#45;&gt;Node33</title>
-<g id="a_edge96_Node000050_Node000033"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M875.83,-400.52C878.58,-399.98 881.32,-399.47 884,-399 1013.97,-376.39 1167.6,-361.34 1253.11,-354"/>
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+<!-- Node49&#45;&gt;Node34 -->
+<g id="edge98_Node000049_Node000034" class="edge">
+<title>Node49&#45;&gt;Node34</title>
+<g id="a_edge98_Node000049_Node000034"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M420.28,-395.84C430.68,-372.13 451.6,-324.41 463.08,-298.23"/>
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-<!-- Node50&#45;&gt;Node34 -->
-<g id="edge98_Node000050_Node000034" class="edge">
-<title>Node50&#45;&gt;Node34</title>
-<g id="a_edge98_Node000050_Node000034"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M769.94,-408.01C708.5,-400.95 612.22,-386.48 585,-363 567.33,-347.76 560.06,-321.11 557.07,-302.61"/>
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+<!-- Node49&#45;&gt;Node48 -->
+<g id="edge94_Node000049_Node000048" class="edge">
+<title>Node49&#45;&gt;Node48</title>
+<g id="a_edge94_Node000049_Node000048"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M473.67,-407.32C625.01,-400.42 1036.44,-381.11 1379.07,-360 1417.97,-357.6 1461.17,-354.56 1497.1,-351.92"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1497.8,-355.38 1507.52,-351.15 1497.29,-348.4 1497.8,-355.38"/>
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-<!-- Node50&#45;&gt;Node49 -->
-<g id="edge94_Node000050_Node000049" class="edge">
-<title>Node50&#45;&gt;Node49</title>
-<g id="a_edge94_Node000050_Node000049"><a xlink:title=" ">
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+<!-- Node51&#45;&gt;Node2 -->
+<g id="edge103_Node000051_Node000002" class="edge">
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-<text xml:space="preserve" text-anchor="middle" x="906" y="-144.38" font-family="Helvetica,sans-Serif" font-size="10.00">map</text>
+<polygon fill="#e0e0e0" stroke="#999999" points="680.07,-156.5 642.07,-156.5 642.07,-137.5 680.07,-137.5 680.07,-156.5"/>
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+<polygon fill="#e0e0e0" stroke="#999999" points="818.07,-156.5 774.07,-156.5 774.07,-137.5 818.07,-137.5 818.07,-156.5"/>
+<text text-anchor="middle" x="796.07" y="-144.5" font-family="Helvetica,sans-Serif" font-size="10.00">string</text>
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+<polygon fill="#63b8ff" stroke="#63b8ff" points="771.19,-164.05 778.64,-156.52 768.12,-157.76 771.19,-164.05"/>
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+<polygon fill="#e0e0e0" stroke="#999999" points="755.57,-156.5 698.57,-156.5 698.57,-137.5 755.57,-137.5 755.57,-156.5"/>
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="763.67,-169.1 767.49,-159.22 758.34,-164.56 763.67,-169.1"/>
+<path fill="none" stroke="#63b8ff" d="M678.83,-197.8C688.5,-187.82 701.44,-174.46 711.49,-164.09"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="714.06,-166.46 718.5,-156.84 709.03,-161.59 714.06,-166.46"/>
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-<text xml:space="preserve" text-anchor="middle" x="845" y="-144.38" font-family="Helvetica,sans-Serif" font-size="10.00">sstream</text>
+<polygon fill="#e0e0e0" stroke="#999999" points="624.07,-156.5 568.07,-156.5 568.07,-137.5 624.07,-137.5 624.07,-156.5"/>
+<text text-anchor="middle" x="596.07" y="-144.5" font-family="Helvetica,sans-Serif" font-size="10.00">sstream</text>
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="819.08,-166.68 826.34,-158.96 815.85,-160.47 819.08,-166.68"/>
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+<polygon fill="#63b8ff" stroke="#63b8ff" points="615.32,-161.08 605.61,-156.84 610.56,-166.21 615.32,-161.08"/>
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-<text xml:space="preserve" text-anchor="middle" x="1919" y="-144.38" font-family="Helvetica,sans-Serif" font-size="10.00">variant</text>
+<polygon fill="#e0e0e0" stroke="#999999" points="2081.57,-156.5 2030.57,-156.5 2030.57,-137.5 2081.57,-137.5 2081.57,-156.5"/>
+<text text-anchor="middle" x="2056.07" y="-144.5" font-family="Helvetica,sans-Serif" font-size="10.00">variant</text>
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="1903.12,-168.41 1908.17,-159.09 1898.41,-163.22 1903.12,-168.41"/>
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="547.02,-29.64 536.97,-26.29 542.73,-35.18 547.02,-29.64"/>
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="124.69,-23.89 114.16,-25.01 123.09,-30.7 124.69,-23.89"/>
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-<!-- Node48&#45;&gt;Node8 -->
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-<title>Node48&#45;&gt;Node8</title>
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-<!-- Node48&#45;&gt;Node14 -->
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-<title>Node48&#45;&gt;Node14</title>
-<g id="a_edge87_Node000048_Node000014"><a xlink:title=" ">
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-<!-- Node48&#45;&gt;Node15 -->
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-<title>Node48&#45;&gt;Node15</title>
-<g id="a_edge85_Node000048_Node000015"><a xlink:title=" ">
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-<!-- Node48&#45;&gt;Node16 -->
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-<title>Node48&#45;&gt;Node16</title>
-<g id="a_edge86_Node000048_Node000016"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M998.89,-405.36C1014.08,-403.19 1030.69,-400.91 1046,-399 1200.48,-379.72 1639.51,-416.23 1739,-296.5 1751.66,-281.26 1747.45,-258.48 1741.05,-240.99"/>
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-<!-- Node48&#45;&gt;Node34 -->
-<g id="edge89_Node000048_Node000034" class="edge">
-<title>Node48&#45;&gt;Node34</title>
-<g id="a_edge89_Node000048_Node000034"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M893.16,-400.59C890.41,-400.03 887.67,-399.5 885,-399 770.3,-377.71 727.54,-418.63 625,-363 598.43,-348.58 577.33,-319.81 565.49,-300.79"/>
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-<!-- Node48&#45;&gt;Node36 -->
-<g id="edge91_Node000048_Node000036" class="edge">
-<title>Node48&#45;&gt;Node36</title>
-<g id="a_edge91_Node000048_Node000036"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M999.09,-404.74C1014.21,-402.58 1030.72,-400.45 1046,-399 1128.83,-391.12 1718.21,-397.34 1794,-363 1820.61,-350.94 1842.8,-325.33 1856.62,-306.16"/>
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-<!-- Node48&#45;&gt;Node49 -->
-<g id="edge83_Node000048_Node000049" class="edge">
-<title>Node48&#45;&gt;Node49</title>
-<g id="a_edge83_Node000048_Node000049"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M965.97,-398.61C977.56,-390.12 992.35,-379.27 1005.19,-369.87"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="1006.89,-372.96 1012.89,-364.22 1002.76,-367.31 1006.89,-372.96"/>
+<g id="a_edge84_Node000048_Node000002"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1602.94,-329.95C1621.22,-320.74 1645.33,-308.6 1665.19,-298.59"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1666.91,-301.64 1674.27,-294.01 1663.76,-295.39 1666.91,-301.64"/>
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 </g>
 <!-- Node49&#45;&gt;Node2 -->
-<g id="edge84_Node000049_Node000002" class="edge">
+<g id="edge95_Node000049_Node000002" class="edge">
 <title>Node49&#45;&gt;Node2</title>
-<g id="a_edge84_Node000049_Node000002"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M1041.03,-332.11C1044.6,-324.69 1049.03,-315.47 1053.11,-306.99"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="1056.16,-308.72 1057.34,-298.19 1049.85,-305.69 1056.16,-308.72"/>
+<g id="a_edge95_Node000049_Node000002"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M473.67,-407.22C666.98,-398.12 1266.49,-369.3 1307.07,-360 1340.86,-352.25 1345.66,-339.24 1379.07,-330 1486,-300.44 1516.61,-312.05 1626.07,-294 1627.38,-293.79 1628.69,-293.57 1630.02,-293.34"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1631.04,-296.72 1640.3,-291.58 1629.86,-289.82 1631.04,-296.72"/>
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-<!-- Node50&#45;&gt;Node2 -->
-<g id="edge95_Node000050_Node000002" class="edge">
-<title>Node50&#45;&gt;Node2</title>
-<g id="a_edge95_Node000050_Node000002"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M842.77,-398.65C866.51,-381.51 907.91,-352.83 946,-332.5 967.92,-320.8 993.15,-309.82 1014.73,-301.12"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="1015.91,-304.42 1023.91,-297.48 1013.32,-297.91 1015.91,-304.42"/>
+<!-- Node49&#45;&gt;Node7 -->
+<g id="edge99_Node000049_Node000007" class="edge">
+<title>Node49&#45;&gt;Node7</title>
+<g id="a_edge99_Node000049_Node000007"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M361.55,-395.9C313.56,-379.9 245.45,-348.66 214.07,-294 191.41,-254.52 83.59,-373.87 222.07,-66 228.46,-51.8 240.91,-39.6 252.02,-30.81"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="254.2,-33.55 260.14,-24.77 250.02,-27.93 254.2,-33.55"/>
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-<!-- Node50&#45;&gt;Node7 -->
-<g id="edge99_Node000050_Node000007" class="edge">
-<title>Node50&#45;&gt;Node7</title>
-<g id="a_edge99_Node000050_Node000007"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M770.07,-414.12C611.62,-415.33 152,-407.99 152,-282.25 152,-282.25 152,-282.25 152,-147.25 152,-103.85 178.64,-58.57 195.49,-34.26"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="198.13,-36.58 201.13,-26.42 192.45,-32.5 198.13,-36.58"/>
+<!-- Node49&#45;&gt;Node8 -->
+<g id="edge100_Node000049_Node000008" class="edge">
+<title>Node49&#45;&gt;Node8</title>
+<g id="a_edge100_Node000049_Node000008"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M354.4,-402.39C291.49,-390.87 195.24,-362.51 149.07,-294 91.15,-208.05 62.41,-162.56 100.07,-66 105.36,-52.44 116.25,-40.33 126.1,-31.42"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="128.62,-33.87 133.99,-24.74 124.1,-28.53 128.62,-33.87"/>
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-<!-- Node50&#45;&gt;Node8 -->
-<g id="edge100_Node000050_Node000008" class="edge">
-<title>Node50&#45;&gt;Node8</title>
-<g id="a_edge100_Node000050_Node000008"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M770.15,-413.03C636.91,-411.85 290.3,-404.73 184,-363 62.93,-315.48 74.22,-226.49 62,-97 60.73,-83.5 60.16,-79.93 62,-66.5 63.4,-56.27 66.33,-45.18 69.15,-36.03"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="72.39,-37.38 72.18,-26.79 65.74,-35.2 72.39,-37.38"/>
+<!-- Node49&#45;&gt;Node14 -->
+<g id="edge97_Node000049_Node000014" class="edge">
+<title>Node49&#45;&gt;Node14</title>
+<g id="a_edge97_Node000049_Node000014"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M384.49,-395.8C369.92,-387.35 353.31,-375.28 343.07,-360 326.33,-335.01 331.43,-323.89 328.07,-294 326.59,-280.75 322.23,-275.98 328.07,-264 335.78,-248.2 351.16,-235.93 364.91,-227.5"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="366.68,-230.52 373.62,-222.51 363.2,-224.45 366.68,-230.52"/>
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-<!-- Node50&#45;&gt;Node14 -->
-<g id="edge97_Node000050_Node000014" class="edge">
-<title>Node50&#45;&gt;Node14</title>
-<g id="a_edge97_Node000050_Node000014"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M875.8,-400.38C878.57,-399.87 881.31,-399.41 884,-399 1103.39,-365.66 1160.73,-379.84 1382,-363 1405.12,-361.24 2195.98,-311.09 2214,-296.5 2231.82,-282.06 2236.81,-255.02 2238.01,-236.22"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="2241.51,-236.4 2238.3,-226.3 2234.51,-236.19 2241.51,-236.4"/>
+<!-- Node49&#45;&gt;Node20 -->
+<g id="edge101_Node000049_Node000020" class="edge">
+<title>Node49&#45;&gt;Node20</title>
+<g id="a_edge101_Node000049_Node000020"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M406.46,-395.8C392.14,-366.93 365.53,-301 399.07,-264 454.12,-203.29 701.08,-277.91 766.07,-228 785.06,-213.42 792.03,-185.42 794.59,-166.72"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="798.08,-167.04 795.66,-156.72 791.12,-166.29 798.08,-167.04"/>
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-<!-- Node50&#45;&gt;Node20 -->
-<g id="edge101_Node000050_Node000020" class="edge">
-<title>Node50&#45;&gt;Node20</title>
-<g id="a_edge101_Node000050_Node000020"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M770.06,-408.72C656.35,-397.08 405.67,-360.19 490,-266 538.47,-211.86 747.88,-257.85 815,-230 835,-221.7 833.93,-209.76 853,-199.5 899.04,-174.72 915.95,-181.62 965,-163.5 965.97,-163.14 966.96,-162.77 967.95,-162.39"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="969.22,-165.65 977.21,-158.69 966.63,-159.15 969.22,-165.65"/>
+<!-- Node49&#45;&gt;Node33 -->
+<g id="edge96_Node000049_Node000033" class="edge">
+<title>Node49&#45;&gt;Node33</title>
+<g id="a_edge96_Node000049_Node000033"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M473.59,-405.37C621.45,-393.87 1005.08,-364.04 1165.21,-351.59"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1165.73,-355.06 1175.43,-350.79 1165.19,-348.08 1165.73,-355.06"/>
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-<!-- Node50&#45;&gt;Node33 -->
-<g id="edge96_Node000050_Node000033" class="edge">
-<title>Node50&#45;&gt;Node33</title>
-<g id="a_edge96_Node000050_Node000033"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M875.83,-400.52C878.58,-399.98 881.32,-399.47 884,-399 1013.97,-376.39 1167.6,-361.34 1253.11,-354"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="1253.28,-357.49 1262.95,-353.16 1252.69,-350.52 1253.28,-357.49"/>
+<!-- Node49&#45;&gt;Node34 -->
+<g id="edge98_Node000049_Node000034" class="edge">
+<title>Node49&#45;&gt;Node34</title>
+<g id="a_edge98_Node000049_Node000034"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M420.28,-395.84C430.68,-372.13 451.6,-324.41 463.08,-298.23"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="466.43,-299.31 467.24,-288.75 460.02,-296.5 466.43,-299.31"/>
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-<!-- Node50&#45;&gt;Node34 -->
-<g id="edge98_Node000050_Node000034" class="edge">
-<title>Node50&#45;&gt;Node34</title>
-<g id="a_edge98_Node000050_Node000034"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M769.94,-408.01C708.5,-400.95 612.22,-386.48 585,-363 567.33,-347.76 560.06,-321.11 557.07,-302.61"/>
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+<!-- Node49&#45;&gt;Node48 -->
+<g id="edge94_Node000049_Node000048" class="edge">
+<title>Node49&#45;&gt;Node48</title>
+<g id="a_edge94_Node000049_Node000048"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M473.67,-407.32C625.01,-400.42 1036.44,-381.11 1379.07,-360 1417.97,-357.6 1461.17,-354.56 1497.1,-351.92"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1497.8,-355.38 1507.52,-351.15 1497.29,-348.4 1497.8,-355.38"/>
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-<!-- Node50&#45;&gt;Node49 -->
-<g id="edge94_Node000050_Node000049" class="edge">
-<title>Node50&#45;&gt;Node49</title>
-<g id="a_edge94_Node000050_Node000049"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M871.14,-398.53C902.07,-389.08 942.44,-376.74 975.25,-366.71"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="976.08,-370.12 984.62,-363.85 974.03,-363.42 976.08,-370.12"/>
+<!-- Node51&#45;&gt;Node2 -->
+<g id="edge103_Node000051_Node000002" class="edge">
+<title>Node51&#45;&gt;Node2</title>
+<g id="a_edge103_Node000051_Node000002"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1590.51,-395.94C1610.32,-387.65 1633.6,-375.68 1651.07,-360 1668.7,-344.18 1682.61,-320.9 1691.42,-303.52"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1694.79,-304.6 1696.01,-294.08 1688.5,-301.54 1694.79,-304.6"/>
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-<!-- Node52&#45;&gt;Node2 -->
-<g id="edge103_Node000052_Node000002" class="edge">
-<title>Node52&#45;&gt;Node2</title>
-<g id="a_edge103_Node000052_Node000002"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M1109.84,-398.73C1111.36,-382.15 1112.14,-354.48 1104,-332.5 1100.36,-322.68 1094.06,-313.23 1087.58,-305.23"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="1090.23,-302.95 1081.02,-297.72 1084.95,-307.55 1090.23,-302.95"/>
+<!-- Node51&#45;&gt;Node33 -->
+<g id="edge105_Node000051_Node000033" class="edge">
+<title>Node51&#45;&gt;Node33</title>
+<g id="a_edge105_Node000051_Node000033"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1490.46,-397.81C1438.7,-387.23 1363.62,-371.88 1308.62,-360.63"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1309.1,-357.15 1298.6,-358.58 1307.7,-364.01 1309.1,-357.15"/>
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-<!-- Node52&#45;&gt;Node33 -->
-<g id="edge105_Node000052_Node000033" class="edge">
-<title>Node52&#45;&gt;Node33</title>
-<g id="a_edge105_Node000052_Node000033"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M1156.14,-398.53C1187.07,-389.08 1227.44,-376.74 1260.25,-366.71"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="1261.08,-370.12 1269.62,-363.85 1259.03,-363.42 1261.08,-370.12"/>
+<!-- Node51&#45;&gt;Node48 -->
+<g id="edge104_Node000051_Node000048" class="edge">
+<title>Node51&#45;&gt;Node48</title>
+<g id="a_edge104_Node000051_Node000048"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1555.62,-395.8C1558.63,-388.09 1562.43,-378.37 1565.87,-369.56"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1569.16,-370.75 1569.54,-360.16 1562.64,-368.21 1569.16,-370.75"/>
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-<!-- Node52&#45;&gt;Node49 -->
-<g id="edge104_Node000052_Node000049" class="edge">
-<title>Node52&#45;&gt;Node49</title>
-<g id="a_edge104_Node000052_Node000049"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M1091.21,-398.61C1081.75,-390.37 1069.74,-379.9 1059.18,-370.69"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="1061.7,-368.25 1051.87,-364.32 1057.1,-373.53 1061.7,-368.25"/>
+<!-- Node56&#45;&gt;Node6 -->
+<g id="edge109_Node000056_Node000006" class="edge">
+<title>Node56&#45;&gt;Node6</title>
+<g id="a_edge109_Node000056_Node000006"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M157.12,-461.69C173.7,-416.59 230.81,-275.81 323.07,-198 430.09,-107.74 473.71,-101.73 609.07,-66 700.87,-41.77 965.62,-26.64 1109.4,-19.98"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1109.72,-23.47 1119.54,-19.51 1109.39,-16.48 1109.72,-23.47"/>
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-<!-- Node57&#45;&gt;Node6 -->
-<g id="edge109_Node000057_Node000006" class="edge">
-<title>Node57&#45;&gt;Node6</title>
-<g id="a_edge109_Node000057_Node000006"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M349.68,-465.23C321.15,-406.37 224.19,-183.15 332,-66.5 348.11,-49.07 402.62,-35.8 449.31,-27.29"/>
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+<!-- Node56&#45;&gt;Node7 -->
+<g id="edge108_Node000056_Node000007" class="edge">
+<title>Node56&#45;&gt;Node7</title>
+<g id="a_edge108_Node000056_Node000007"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M106.43,-461.87C89.41,-454.14 71.86,-442.64 62.07,-426 25.56,-363.95 39.81,-332.47 62.07,-264 95.72,-160.52 129.33,-143.14 206.07,-66 219.72,-52.28 237.39,-39.41 251.29,-30.16"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="253.32,-33.02 259.8,-24.64 249.51,-27.14 253.32,-33.02"/>
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-<!-- Node57&#45;&gt;Node7 -->
-<g id="edge108_Node000057_Node000007" class="edge">
-<title>Node57&#45;&gt;Node7</title>
-<g id="a_edge108_Node000057_Node000007"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M304,-477.31C228.98,-472.79 97.04,-460.56 62,-429.5 33.98,-404.66 38,-386.19 38,-348.75 38,-348.75 38,-348.75 38,-280.25 38,-170.64 143.13,-70.61 188.52,-32.53"/>
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+<!-- Node56&#45;&gt;Node8 -->
+<g id="edge110_Node000056_Node000008" class="edge">
+<title>Node56&#45;&gt;Node8</title>
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 <title>Node5&#45;&gt;Node15</title>
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="452.82,-27.11 442.44,-29.23 451.88,-34.05 452.82,-27.11"/>
+<path fill="none" stroke="#63b8ff" d="M1885.9,-68.57C1745.81,-57.2 1441.41,-32.5 1305.68,-21.49"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1305.67,-17.98 1295.42,-20.66 1305.11,-24.96 1305.67,-17.98"/>
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@@ -796,8 +795,8 @@ var sectionId = 'dynsection-0';
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@@ -805,8 +804,8 @@ var sectionId = 'dynsection-0';
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="392.66,-42.36 389.48,-32.25 385.66,-42.13 392.66,-42.36"/>
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@@ -814,8 +813,8 @@ var sectionId = 'dynsection-0';
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="1402.7,-94.98 1395.14,-87.56 1396.42,-98.08 1402.7,-94.98"/>
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+<polygon fill="#63b8ff" stroke="#63b8ff" points="2005.8,-83.94 1995.26,-85.05 2004.19,-90.76 2005.8,-83.94"/>
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@@ -823,8 +822,8 @@ var sectionId = 'dynsection-0';
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="2319.38,-23.24 2329.21,-19.3 2319.07,-16.25 2319.38,-23.24"/>
+<path fill="none" stroke="#63b8ff" d="M2232.03,-120.88C2272.96,-97.8 2353.68,-52.28 2393.95,-29.56"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="2395.83,-32.52 2402.82,-24.56 2392.39,-26.42 2395.83,-32.52"/>
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@@ -832,8 +831,8 @@ var sectionId = 'dynsection-0';
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+<polygon fill="#63b8ff" stroke="#63b8ff" points="1854.04,-18.27 1843.58,-19.96 1852.81,-25.16 1854.04,-18.27"/>
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@@ -841,8 +840,8 @@ var sectionId = 'dynsection-0';
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 <title>Node17&#45;&gt;Node14</title>
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="1016.02,-24.9 1005.45,-25.71 1014.21,-31.66 1016.02,-24.9"/>
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+<polygon fill="#63b8ff" stroke="#63b8ff" points="2201.21,-34.35 2196.81,-24.71 2194.24,-34.99 2201.21,-34.35"/>
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@@ -850,8 +849,8 @@ var sectionId = 'dynsection-0';
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 <title>Node18&#45;&gt;Node17</title>
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="1430.27,-162.54 1423.97,-154.02 1423.59,-164.61 1430.27,-162.54"/>
+<path fill="none" stroke="#63b8ff" d="M2156.43,-186.8C2164.93,-178.43 2175.84,-167.68 2185.36,-158.31"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="2187.94,-160.67 2192.61,-151.16 2183.03,-155.69 2187.94,-160.67"/>
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@@ -859,8 +858,8 @@ var sectionId = 'dynsection-0';
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 <title>Node19</title>
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-<text xml:space="preserve" text-anchor="middle" x="1556" y="-133.12" font-family="Helvetica,sans-Serif" font-size="10.00">memory</text>
+<polygon fill="#e0e0e0" stroke="#999999" points="2090,-145.5 2032,-145.5 2032,-126.5 2090,-126.5 2090,-145.5"/>
+<text text-anchor="middle" x="2061" y="-133.5" font-family="Helvetica,sans-Serif" font-size="10.00">memory</text>
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@@ -868,17 +867,17 @@ var sectionId = 'dynsection-0';
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 <g id="a_edge25_Node000018_Node000019"><a xlink:title=" ">
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="1531.26,-155.63 1538.33,-147.74 1527.88,-149.5 1531.26,-155.63"/>
+<path fill="none" stroke="#63b8ff" d="M2124.02,-186.8C2111.02,-176.53 2093.49,-162.67 2080.21,-152.18"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="2082.21,-149.3 2072.19,-145.84 2077.87,-154.79 2082.21,-149.3"/>
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-<g id="edge30_Node000020_Node000015" class="edge">
+<g id="edge31_Node000020_Node000015" class="edge">
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-<g id="a_edge30_Node000020_Node000015"><a xlink:title=" ">
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="431.21,-33.13 420.72,-31.63 427.98,-39.34 431.21,-33.13"/>
+<g id="a_edge31_Node000020_Node000015"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M953.91,-187C970.09,-177.52 991.37,-164.35 1009,-151 1024.8,-139.03 1027.15,-134.13 1042,-121 1070.1,-96.16 1073.75,-85.15 1106,-66 1128.68,-52.53 1155.64,-41.54 1179.25,-33.34"/>
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@@ -886,8 +885,8 @@ var sectionId = 'dynsection-0';
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-<text xml:space="preserve" text-anchor="middle" x="660" y="-133.12" font-family="Helvetica,sans-Serif" font-size="10.00">map</text>
+<polygon fill="#e0e0e0" stroke="#999999" points="926,-145.5 888,-145.5 888,-126.5 926,-126.5 926,-145.5"/>
+<text text-anchor="middle" x="907" y="-133.5" font-family="Helvetica,sans-Serif" font-size="10.00">map</text>
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@@ -895,8 +894,8 @@ var sectionId = 'dynsection-0';
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="663.5,-158.34 660,-148.34 656.5,-158.34 663.5,-158.34"/>
+<path fill="none" stroke="#63b8ff" d="M924.12,-186.8C920.96,-177.6 916.81,-165.53 913.39,-155.58"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="916.6,-154.16 910.04,-145.84 909.98,-156.44 916.6,-154.16"/>
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@@ -904,8 +903,8 @@ var sectionId = 'dynsection-0';
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@@ -913,8 +912,8 @@ var sectionId = 'dynsection-0';
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+<polygon fill="#e0e0e0" stroke="#999999" points="1206.5,-85 1149.5,-85 1149.5,-66 1206.5,-66 1206.5,-85"/>
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+<!-- Node20&#45;&gt;Node24 -->
+<g id="edge30_Node000020_Node000024" class="edge">
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-<text xml:space="preserve" text-anchor="middle" x="312" y="-77.88" font-family="Helvetica,sans-Serif" font-size="10.00">tuple</text>
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+<path fill="none" stroke="#63b8ff" d="M323.33,-131.8C322.91,-122.7 322.35,-110.79 321.89,-100.9"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="325.38,-100.67 321.41,-90.84 318.39,-101 325.38,-100.67"/>
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-<text xml:space="preserve" text-anchor="middle" x="454" y="-77.88" font-family="Helvetica,sans-Serif" font-size="10.00">functional</text>
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@@ -855,8 +854,8 @@ var sectionId = 'dynsection-0';
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@@ -873,8 +872,8 @@ var sectionId = 'dynsection-0';
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@@ -891,8 +890,8 @@ var sectionId = 'dynsection-0';
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="1313.23,-158.53 1310.36,-148.33 1306.25,-158.1 1313.23,-158.53"/>
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="1947.13,-158.07 1942.38,-148.6 1940.19,-158.97 1947.13,-158.07"/>
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="1982.93,-225.22 1984.1,-214.69 1976.62,-222.18 1982.93,-225.22"/>
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="1315.26,-229.76 1309.99,-220.57 1308.38,-231.04 1315.26,-229.76"/>
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+<polygon fill="#63b8ff" stroke="#63b8ff" points="1249.59,-217.88 1239.03,-217.01 1246.74,-224.27 1249.59,-217.88"/>
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="1484.31,-225.67 1492.97,-219.57 1482.4,-218.93 1484.31,-225.67"/>
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+<polygon fill="#63b8ff" stroke="#63b8ff" points="1579.82,-221.71 1588.86,-216.19 1578.35,-214.86 1579.82,-221.71"/>
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="481.69,-23.67 471.27,-25.55 480.59,-30.58 481.69,-23.67"/>
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="1001.78,-352.21 1011.05,-347.07 1000.6,-345.31 1001.78,-352.21"/>
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+<!-- Node46&#45;&gt;Node3 -->
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+<title>Node46&#45;&gt;Node3</title>
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@@ -847,8 +846,8 @@ var sectionId = 'dynsection-0';
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@@ -856,8 +855,8 @@ var sectionId = 'dynsection-0';
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="2066.76,-34.89 2072.7,-26.12 2062.59,-29.27 2066.76,-34.89"/>
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@@ -874,8 +873,8 @@ var sectionId = 'dynsection-0';
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="1638.85,-163.4 1628.29,-164.29 1637.1,-170.18 1638.85,-163.4"/>
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@@ -901,8 +900,8 @@ var sectionId = 'dynsection-0';
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@@ -919,8 +918,8 @@ var sectionId = 'dynsection-0';
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@@ -937,8 +936,8 @@ var sectionId = 'dynsection-0';
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@@ -946,8 +945,8 @@ var sectionId = 'dynsection-0';
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@@ -955,8 +954,8 @@ var sectionId = 'dynsection-0';
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@@ -964,8 +963,8 @@ var sectionId = 'dynsection-0';
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+    [ "gridfire::exceptions::StaleJacobianError", "classgridfire_1_1exceptions_1_1StaleJacobianError.html", null ],
+    [ "gridfire::exceptions::UninitializedJacobianError", "classgridfire_1_1exceptions_1_1UninitializedJacobianError.html", null ],
+    [ "gridfire::exceptions::UnknownJacobianError", "classgridfire_1_1exceptions_1_1UnknownJacobianError.html", null ]
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diff --git a/docs/html/error__utils_8h.js b/docs/html/error__utils_8h.js
index 71e87d0a..c1357ddb 100644
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-<li>clear()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300">gridfire::engine::ReactionSet</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300">gridfire::reaction::ReactionSet</a></li>
-<li>clone()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_reaction.html#a588a8c19970463d97f5aa333fcd312dc">gridfire::engine::Reaction</a>, <a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_chain_policy.html#a83042f4626ec22810314fa5181d3392a">gridfire::policy::CNOIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_i_chain_policy.html#ab3aa5daaf2d9274770f981d8f67ae20b">gridfire::policy::CNOIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_i_i_chain_policy.html#a9c0e056615742b3d77f47b3eb676ff28">gridfire::policy::CNOIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_v_chain_policy.html#a35bef8035035eb85bb188ede6045556c">gridfire::policy::CNOIVChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_hot_c_n_o_i_chain_policy.html#ae70a448fdeee35e159784fd6a506dce7">gridfire::policy::HotCNOIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_hot_c_n_o_i_i_chain_policy.html#afeb9b237b70963715adc64ad68e11675">gridfire::policy::HotCNOIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_hot_c_n_o_i_i_i_chain_policy.html#a5d86341bb4370647762c889519793d41">gridfire::policy::HotCNOIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_multi_reaction_chain_policy.html#ab3bbbf21164211a01c5398a0ee281bb2">gridfire::policy::MultiReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_proton_proton_i_chain_policy.html#affd234a60ba31decca25b3367c7ede5e">gridfire::policy::ProtonProtonIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_proton_proton_i_i_chain_policy.html#ad70b081f8623fad207050c0f81f6a457">gridfire::policy::ProtonProtonIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_proton_proton_i_i_i_chain_policy.html#ac84ab054fc0f600f783ea3282d6fd4f6">gridfire::policy::ProtonProtonIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_reaction_chain_policy.html#ac24ff49b7715ad3eefea4bed1bf23686">gridfire::policy::ReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_triple_alpha_chain_policy.html#a447ff0d2de9df09400e63f0fc087efa3">gridfire::policy::TripleAlphaChainPolicy</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac10e1451d20876f6eab199e127f213c7">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad113b9cb64c449f9449c4cce4fa64076">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a54fde02e7010e806136f976ab64b1740">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab95ce7fb022a9432bdc77f14679221ee">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_weak_reaclib_reaction.html#ac3fc463a1cea6854ea989732e1e5f65a">gridfire::reaction::WeakReaclibReaction</a>, <a class="el" href="class_py_partition_function.html#af918b357e38fb82499ad53584557c43d">PyPartitionFunction</a>, <a class="el" href="class_py_reaction_chain_policy.html#a0b44991bd6a5edebb861e78a26f783cd">PyReactionChainPolicy</a></li>
-<li>CNOChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1_c_n_o_chain_policy.html#a5a526c6239c3a321c81484061a7a53e4">gridfire::policy::CNOChainPolicy</a></li>
-<li>CNOIChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_chain_policy.html#a7b428233b7cd85bac48c0b4906f990ce">gridfire::policy::CNOIChainPolicy</a></li>
-<li>CNOIIChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_i_chain_policy.html#aebcb36cb5cfbde4cf0e5b785c4b8cbd8">gridfire::policy::CNOIIChainPolicy</a></li>
-<li>CNOIIIChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_i_i_chain_policy.html#af5ba73b9349e97fd1e2876ce9e9fac0b">gridfire::policy::CNOIIIChainPolicy</a></li>
-<li>CNOIVChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_v_chain_policy.html#a3a73e280dca833ff6517bef9b9193aa1">gridfire::policy::CNOIVChainPolicy</a></li>
-<li>coeffs&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1_reaction_record.html#a80803f612e574859fde0a163bca84bc0">gridfire::reaclib::ReactionRecord</a></li>
-<li>collect()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_defined_engine_view.html#a38191e2b3b219d348eba0109dce271c3">gridfire::engine::DefinedEngineView</a></li>
-<li>collectAtomicReverseRateAtomicBases()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#a5fadd1bb2692e1527ce24295c77cfc72">gridfire::engine::GraphEngine</a></li>
-<li>collectComposition()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_adaptive_engine_view.html#a77d4c08eecfad5cc414161d0fc8db946">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1_defined_engine_view.html#a25dc44af1a58561b665103b16abe9bbc">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1_dynamic_engine.html#a41877719ae5e8de53c1692c7cf9bfbfc">gridfire::engine::DynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#ae9d4d99c791876c012697fe5a0ba06c8">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view.html#a97d9616558f681ad010ee452394f3519">gridfire::engine::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a239826d90cb5db236e68230f7ac84bcb">PyDynamicEngine</a></li>
-<li>collectNetworkSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#a8f29c77e777fdc6517f2c7778537ba6f">gridfire::engine::GraphEngine</a></li>
-<li>Column()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1_column.html#a7d7e4f4cf6f8e03725afeb9f664321b8">gridfire::utils::Column&lt; T &gt;</a></li>
-<li>comp&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_solver_1_1_user_data.html#abdf43266a5641c80c25fb2ab3391e40e">gridfire::engine::MultiscalePartitioningEngineView::QSESolver::UserData</a></li>
-<li>CompositePartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#ad80743933712de627c6a69d06d42ceb5">gridfire::partition::CompositePartitionFunction</a></li>
-<li>composition&#160;:&#160;<a class="el" href="structgridfire_1_1_net_in.html#a13058f4929e72c1187abbebcddb8aed1">gridfire::NetIn</a>, <a class="el" href="structgridfire_1_1_net_out.html#a073529511ae0e52f868b47cce0e8ac0a">gridfire::NetOut</a></li>
-<li>Config&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_adaptive_engine_view.html#a0a49d174e105adb3ffd9cf98ff58db3e">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1_file_defined_engine_view.html#a8d066e95f4cc201cbda90c2aec5d98c4">gridfire::engine::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036">gridfire::io::SimpleReactionListFileParser</a></li>
-<li>construct()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1_main_sequence_policy.html#aa9b4e39dacada73756bfd78885da60bd">gridfire::policy::MainSequencePolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_network_policy.html#a13cd74c967592392b01d8fe9a5b34d88">gridfire::policy::NetworkPolicy</a>, <a class="el" href="class_py_network_policy.html#a6871d8aae79db9b784d40b05225b3445">PyNetworkPolicy</a></li>
-<li>constructCandidateGroups()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view.html#a28502c9e8fc0a40211fd3717c2b67214">gridfire::engine::MultiscalePartitioningEngineView</a></li>
-<li>constructPrimingReactionSet()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_network_priming_engine_view.html#acaf9433246a58f2365c5bd8907cbacbb">gridfire::engine::NetworkPrimingEngineView</a></li>
-<li>constructReactionIndexMap()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_defined_engine_view.html#a8464c50142f34583201c4abc7fbcba36">gridfire::engine::DefinedEngineView</a></li>
-<li>constructSpeciesIndexMap()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_defined_engine_view.html#a20b54c8b13616982eddb3ae3979b842d">gridfire::engine::DefinedEngineView</a></li>
-<li>contains()&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a64018f4dd6c225b0790a0fd4065a0972">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a>, <a class="el" href="classgridfire_1_1engine_1_1_reaction.html#adaeb5d72faf7d55d4e26f6e1fcba21c1">gridfire::engine::Reaction</a>, <a class="el" href="classgridfire_1_1engine_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387">gridfire::engine::ReactionSet</a>, <a class="el" href="classgridfire_1_1policy_1_1_multi_reaction_chain_policy.html#a792cf0af8e5c365d0332cd585968dae1">gridfire::policy::MultiReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_reaction_chain_policy.html#a0c9a42646920ac02c8d1e63dfe6f9461">gridfire::policy::ReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_temperature_dependent_chain_policy.html#a8869287d36b3ff143e7f84799ef35dd9">gridfire::policy::TemperatureDependentChainPolicy</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a745b161968f37873b5d40fe6bf9d2118">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a171b690e1abaf23f11a94c39e9f8c944">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a768db057d358240d4825c21869af0792">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#ae5f8078e77a700a8356487fbd69ba387">gridfire::reaction::ReactionSet</a>, <a class="el" href="class_py_reaction_chain_policy.html#a16f289efd1d92eead3a3ca6fcfceba4d">PyReactionChainPolicy</a></li>
-<li>contains_product()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_reaction.html#a5a17ca61d069749960e5a83e58c0b8a1">gridfire::engine::Reaction</a>, <a class="el" href="classgridfire_1_1engine_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e">gridfire::engine::ReactionSet</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a957b5bfe70e536290ef677a7c5b6643f">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a4e4811436d09afaa4a14c51d9af71f88">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a2708d2e8f42159df6605a5948b13c4c5">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a4bdf50219d686a6cbc0b3cc5365dc18e">gridfire::reaction::ReactionSet</a></li>
-<li>contains_reactant()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_reaction.html#afca3afba45a3db79980c8fe18c87c750">gridfire::engine::Reaction</a>, <a class="el" href="classgridfire_1_1engine_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2">gridfire::engine::ReactionSet</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a98095e6536d9a6434c5955f4c169d505">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a65a12e5f6180873866cfaaf130fd1156">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab28bf4f9417ecabcc8350bae449fedd5">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a256998eddf292f744d51cdc3e178d4c2">gridfire::reaction::ReactionSet</a></li>
-<li>contains_species()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a">gridfire::engine::ReactionSet</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a5b872a8519740a6d06cfaed03784826a">gridfire::reaction::ReactionSet</a></li>
-<li>containsAlgebraic()&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a553a39a2a8e6cea1d6f849cb7097fee6">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></li>
-<li>containsSeed()&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#aa65229a4974b74ce4fc3f7c0544fbe91">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></li>
-<li>ConvergenceFailureTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#a63010d8ba73689dda0c2228a1462aae2">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></li>
-<li>countProductOccurrences()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_reaction.html#aa786369c0aff9b7c8fffbfb632cdc61f">gridfire::engine::Reaction</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#aeba08ed8204fc4999dc0324076d67d2a">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#abe3ab72b2577cbe0f87436b063ce812c">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a62fc82b29bacc10cfbceaa1571b14525">gridfire::reaction::Reaction</a></li>
-<li>countReactantOccurrences()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_reaction.html#a3e1e3dbac9fc81799b5284a57e9bd3ec">gridfire::engine::Reaction</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#acfc3740ed0aa72986b2c1bc2666974d6">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a79928f9c52822202b3156bd145e35ad8">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a036773e4dc917facbf2308dbbe853633">gridfire::reaction::Reaction</a></li>
+<li>c&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1GraphEngine_1_1constants.html#acb2760ecfe67d55b165c45f2bf80e560">gridfire::engine::GraphEngine::constants</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#ab176a60ea64181d84be3bb6496ad0b0e">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>calculate_energy_generation_rate()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a091d6d4aa59f788c97f9b5481f46f1b5">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a4282f85c34d6db1994c07e7a40f66d80">gridfire::reaction::Reaction</a></li>
+<li>calculate_log_rate_partial_deriv_wrt_T9()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#ac2d5366d4b5766413db34558dbce3cb3">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a9b1363314159eaf9c56aaa233f5eebd6">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ada6ec1ae05b9a92b58e6a4ecdf5a1656">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#aa2b615e764bb005e526ca9327319c735">gridfire::reaction::Reaction</a></li>
+<li>calculate_rate()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aa28f151d4ce14e0d6fcbecb07d03cd28">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a19462806927500f72b7d3f578b3040de">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#aeb177f9cf69e4f97c4518a27e6480523">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#af8303d67df61fc9e31ce054f0e8a3e14">gridfire::reaction::Reaction</a></li>
+<li>calculate_rhs()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a460c2d19b468769770ec14e52684c0c8">gridfire::solver::CVODESolverStrategy</a></li>
+<li>calculateAllDerivatives()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a23187ad3ee504de46f59e1644c715c9f">gridfire::engine::GraphEngine</a></li>
+<li>calculateAllDerivativesUsingPrecomputation()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#abdd3ea788cbe3448b11969c7bbe09546">gridfire::engine::GraphEngine</a></li>
+<li>calculateAllReactionFlows()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a6f13f42773dec03a6b3e90b4997d42fb">gridfire::engine::AdaptiveEngineView</a></li>
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+<li>calculateFactors_impl()&#160;:&#160;<a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#a48a3392d735c61b15b4855c823acfada">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1IntermediateScreeningModel.html#a794b7781f07343383da3894208cfbfa9">gridfire::screening::IntermediateScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html#aa9f95ba8c052dacb72295775516b7e5f">gridfire::screening::WeakScreeningModel</a></li>
+<li>calculateMolarReactionFlow()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a5bd0174105e836dd98c71ab495357e5b">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a2f0ad1febc467bce87b5c6ad29b059fb">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aa57fa5e58b98a03fba31bcddda8001d4">gridfire::engine::DynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#aaff9cdc04ca01e7c927d36476bcf5da4">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#af030c9bd6a95686a09429b4619ad188c">gridfire::engine::MultiscalePartitioningEngineView</a>, <a class="el" href="classPyDynamicEngine.html#a8facba88b6df6e016ce53a0ff3cff125">PyDynamicEngine</a></li>
+<li>calculateReverseMolarReactionFlow()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a2e7012382ee44473478ebc37ac36695c">gridfire::engine::GraphEngine</a></li>
+<li>calculateReverseRate()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a4dd5733c77e9a7ad8b5e541c187fabae">gridfire::engine::GraphEngine</a></li>
+<li>calculateReverseRateTwoBody()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#aa6b07108beeab1bc75c3099c25be7833">gridfire::engine::GraphEngine</a></li>
+<li>calculateReverseRateTwoBodyDerivative()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a83ef40080c62d667b3fee71237efd2e0">gridfire::engine::GraphEngine</a></li>
+<li>calculateRHSAndEnergy()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a5de5211bc99a1995143307284be6df4a">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a82cbef591ef1aafcb9a42e01bf38fc38">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1Engine.html#a764fc091c72c12c8529105d7c96badb2">gridfire::engine::Engine</a>, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#aee098a65f5cecded199d2c00422b398d">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aa960005503d18066015aef280680d616">gridfire::engine::MultiscalePartitioningEngineView</a>, <a class="el" href="classPyDynamicEngine.html#aac1f2005c0a58befc4e01627c9357924">PyDynamicEngine</a>, <a class="el" href="classPyEngine.html#abc26a86d4f93b37564d32814edbbac4d">PyEngine</a></li>
+<li>calculateScreeningFactors()&#160;:&#160;<a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#ad252ce1de82401bab24747aabf0c8a3a">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1IntermediateScreeningModel.html#a86a218ce82306ed582296cbeb3de0250">gridfire::screening::IntermediateScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a1da8242c7591ab32453d1e0109999d6c">gridfire::screening::ScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html#a6a215d082b0d05126fb2b19fd1983446">gridfire::screening::WeakScreeningModel</a>, <a class="el" href="classPyScreening.html#aa67b5f0528006d9c742033b8c5ab3a05">PyScreening</a></li>
+<li>captured_exception&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a574e03aef08e1d3c9f4914bda1ad78c6">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></li>
+<li>causes&#160;:&#160;<a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html#a7cf4d21d3cd3e53b62736932b44072cd">gridfire::trigger::TriggerResult</a></li>
+<li>chapter&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1ReactionRecord.html#a5c853b69a23b0a8c39ab4b55ac3fe3cc">gridfire::reaclib::ReactionRecord</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#abe189c43e4d509d9d05dd205861ceddc">gridfire::reaction::ReaclibReaction</a></li>
+<li>check()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#aaefdfa86856f9f7839b6a7fdffa4a579">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a69fbb099f8d13d39602f58fa8aa8e7f2">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#ae453a72df20fdd416443ef7867f86b92">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#ac8be54d91e77ed16ae3cca2417d82e0a">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#ae8765656a45319335c2bb90c3fb3d308">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a3855b15459217383647ecdf12bc35775">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a50df7fefee167390522aa258fa6ee960">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a04598611b0807cad395bdd2fbc41a6c2">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a1579ffb1c841cda4e67990b42d400d88">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
+<li>check_status()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#af5101829bcb344aa29ea65983732333d">gridfire::policy::MainSequencePolicy</a></li>
+<li>cleanup_cvode_resources()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a7f6786780137de1a136e081c537a9667">gridfire::solver::CVODESolverStrategy</a></li>
+<li>clear()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#aa8e0d65aafc6e0320690b4906e1bf300">gridfire::reaction::ReactionSet</a></li>
+<li>clone()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a7b000d55c7d1f489e54a57f7f4e3808a">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#ade2b0f92a3d9b74968166793466a11e4">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a677a90f992fd56b8718e36655c33ce6d">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#ad229cac0a84df5ebbcaf0550f83debf6">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIChainPolicy.html#a83042f4626ec22810314fa5181d3392a">gridfire::policy::CNOIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html#ab3aa5daaf2d9274770f981d8f67ae20b">gridfire::policy::CNOIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIIIChainPolicy.html#a9c0e056615742b3d77f47b3eb676ff28">gridfire::policy::CNOIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html#a35bef8035035eb85bb188ede6045556c">gridfire::policy::CNOIVChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html#ae70a448fdeee35e159784fd6a506dce7">gridfire::policy::HotCNOIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html#afeb9b237b70963715adc64ad68e11675">gridfire::policy::HotCNOIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html#a5d86341bb4370647762c889519793d41">gridfire::policy::HotCNOIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab3bbbf21164211a01c5398a0ee281bb2">gridfire::policy::MultiReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html#affd234a60ba31decca25b3367c7ede5e">gridfire::policy::ProtonProtonIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html#ad70b081f8623fad207050c0f81f6a457">gridfire::policy::ProtonProtonIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html#ac84ab054fc0f600f783ea3282d6fd4f6">gridfire::policy::ProtonProtonIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac24ff49b7715ad3eefea4bed1bf23686">gridfire::policy::ReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html#a447ff0d2de9df09400e63f0fc087efa3">gridfire::policy::TripleAlphaChainPolicy</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#ac10e1451d20876f6eab199e127f213c7">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#ad113b9cb64c449f9449c4cce4fa64076">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a54fde02e7010e806136f976ab64b1740">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab95ce7fb022a9432bdc77f14679221ee">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html#ac3fc463a1cea6854ea989732e1e5f65a">gridfire::reaction::WeakReaclibReaction</a>, <a class="el" href="classPyPartitionFunction.html#af918b357e38fb82499ad53584557c43d">PyPartitionFunction</a>, <a class="el" href="classPyReactionChainPolicy.html#a0b44991bd6a5edebb861e78a26f783cd">PyReactionChainPolicy</a></li>
+<li>CNOChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1CNOChainPolicy.html#a5a526c6239c3a321c81484061a7a53e4">gridfire::policy::CNOChainPolicy</a></li>
+<li>CNOIChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1CNOIChainPolicy.html#a7b428233b7cd85bac48c0b4906f990ce">gridfire::policy::CNOIChainPolicy</a></li>
+<li>CNOIIChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html#aebcb36cb5cfbde4cf0e5b785c4b8cbd8">gridfire::policy::CNOIIChainPolicy</a></li>
+<li>CNOIIIChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1CNOIIIChainPolicy.html#af5ba73b9349e97fd1e2876ce9e9fac0b">gridfire::policy::CNOIIIChainPolicy</a></li>
+<li>CNOIVChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html#a3a73e280dca833ff6517bef9b9193aa1">gridfire::policy::CNOIVChainPolicy</a></li>
+<li>coeffs&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1ReactionRecord.html#a80803f612e574859fde0a163bca84bc0">gridfire::reaclib::ReactionRecord</a></li>
+<li>collect()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a38191e2b3b219d348eba0109dce271c3">gridfire::engine::DefinedEngineView</a></li>
+<li>collectAtomicReverseRateAtomicBases()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a5fadd1bb2692e1527ce24295c77cfc72">gridfire::engine::GraphEngine</a></li>
+<li>collectComposition()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a77d4c08eecfad5cc414161d0fc8db946">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a25dc44af1a58561b665103b16abe9bbc">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a41877719ae5e8de53c1692c7cf9bfbfc">gridfire::engine::DynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ae9d4d99c791876c012697fe5a0ba06c8">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a97d9616558f681ad010ee452394f3519">gridfire::engine::MultiscalePartitioningEngineView</a>, <a class="el" href="classPyDynamicEngine.html#a239826d90cb5db236e68230f7ac84bcb">PyDynamicEngine</a></li>
+<li>collectNetworkSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a8f29c77e777fdc6517f2c7778537ba6f">gridfire::engine::GraphEngine</a></li>
+<li>Column()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1Column.html#a7d7e4f4cf6f8e03725afeb9f664321b8">gridfire::utils::Column&lt; T &gt;</a></li>
+<li>comp&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver_1_1UserData.html#abdf43266a5641c80c25fb2ab3391e40e">gridfire::engine::MultiscalePartitioningEngineView::QSESolver::UserData</a></li>
+<li>CompositePartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#ad80743933712de627c6a69d06d42ceb5">gridfire::partition::CompositePartitionFunction</a></li>
+<li>composition&#160;:&#160;<a class="el" href="structgridfire_1_1NetIn.html#a13058f4929e72c1187abbebcddb8aed1">gridfire::NetIn</a>, <a class="el" href="structgridfire_1_1NetOut.html#a073529511ae0e52f868b47cce0e8ac0a">gridfire::NetOut</a></li>
+<li>Config&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a0a49d174e105adb3ffd9cf98ff58db3e">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html#a8d066e95f4cc201cbda90c2aec5d98c4">gridfire::engine::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html#af43ad8375abf1cedfdccc296b9958c2b">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#ad913155a5a2a36b29e4ce4ca8d71c036">gridfire::io::SimpleReactionListFileParser</a></li>
+<li>construct()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#aa9b4e39dacada73756bfd78885da60bd">gridfire::policy::MainSequencePolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a13cd74c967592392b01d8fe9a5b34d88">gridfire::policy::NetworkPolicy</a>, <a class="el" href="classPyNetworkPolicy.html#a6871d8aae79db9b784d40b05225b3445">PyNetworkPolicy</a></li>
+<li>constructCandidateGroups()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a28502c9e8fc0a40211fd3717c2b67214">gridfire::engine::MultiscalePartitioningEngineView</a></li>
+<li>constructPrimingReactionSet()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#acaf9433246a58f2365c5bd8907cbacbb">gridfire::engine::NetworkPrimingEngineView</a></li>
+<li>constructReactionIndexMap()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a8464c50142f34583201c4abc7fbcba36">gridfire::engine::DefinedEngineView</a></li>
+<li>constructSpeciesIndexMap()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a20b54c8b13616982eddb3ae3979b842d">gridfire::engine::DefinedEngineView</a></li>
+<li>contains()&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a64018f4dd6c225b0790a0fd4065a0972">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a>, <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a792cf0af8e5c365d0332cd585968dae1">gridfire::policy::MultiReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a0c9a42646920ac02c8d1e63dfe6f9461">gridfire::policy::ReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8869287d36b3ff143e7f84799ef35dd9">gridfire::policy::TemperatureDependentChainPolicy</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a745b161968f37873b5d40fe6bf9d2118">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a171b690e1abaf23f11a94c39e9f8c944">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a768db057d358240d4825c21869af0792">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a2f6b165c86634a68f35032c2267255f8">gridfire::reaction::ReactionSet</a>, <a class="el" href="classPyReactionChainPolicy.html#a16f289efd1d92eead3a3ca6fcfceba4d">PyReactionChainPolicy</a></li>
+<li>contains_product()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a957b5bfe70e536290ef677a7c5b6643f">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a4e4811436d09afaa4a14c51d9af71f88">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a2708d2e8f42159df6605a5948b13c4c5">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a4bdf50219d686a6cbc0b3cc5365dc18e">gridfire::reaction::ReactionSet</a></li>
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+<li>dt0&#160;:&#160;<a class="el" href="structgridfire_1_1NetIn.html#a4e556f7bb18f46654b3445476734076a">gridfire::NetIn</a></li>
+<li>dydt&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html#aad90bec88a31fce600c60c29835410b1">gridfire::engine::StepDerivatives&lt; T &gt;</a></li>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/functions_func.html b/docs/html/functions_func.html
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 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
 <link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
 <script type="text/javascript" src="navtreedata.js"></script>
 <script type="text/javascript" src="navtree.js"></script>
-<script type="text/javascript" src="resize.js"></script>
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 <script type="text/javascript" src="search/searchdata.js"></script>
 <script type="text/javascript" src="search/search.js"></script>
@@ -29,7 +27,7 @@
  <tbody>
  <tr id="projectrow">
   <td id="projectalign">
-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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    <div id="projectbrief">General Purpose Nuclear Network</div>
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 </table>
 </div>
 <!-- end header part -->
-<!-- Generated by Doxygen 1.13.2 -->
+<!-- Generated by Doxygen 1.9.8 -->
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 $(function() {
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-  $(function() { init_search(); });
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
 });
 /* @license-end */
 </script>
@@ -73,7 +66,7 @@ $(function() {
 </div>
 <script type="text/javascript">
 /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
-$(function(){initNavTree('functions_func.html',''); initResizable(true); });
+$(document).ready(function(){initNavTree('functions_func.html',''); initResizable(); });
 /* @license-end */
 </script>
 <div id="doc-content">
@@ -102,22 +95,22 @@ $(function(){initNavTree('functions_func.html',''); initResizable(true); });
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-<li>AdaptiveEngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_adaptive_engine_view.html#aea8914f56e34445aacf0a5d0af073897">gridfire::engine::AdaptiveEngineView</a></li>
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-<li>analyzeTimescalePoolConnectivity()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view.html#a8d4153f520b486dbb262888e22b95896">gridfire::engine::MultiscalePartitioningEngineView</a></li>
-<li>AndTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a969738baf0bda97664715937d4bc403e">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></li>
-<li>AtomicReverseRate()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_graph_engine_1_1_atomic_reverse_rate.html#a29639c336e8a6786ec2edea98915c0a4">gridfire::engine::GraphEngine::AtomicReverseRate</a></li>
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+<li>abs_failure()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a5ae9ce66d4bbafd83145f8545a32d33a">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></li>
+<li>AdaptiveEngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#aea8914f56e34445aacf0a5d0af073897">gridfire::engine::AdaptiveEngineView</a></li>
+<li>add_reaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a69508797ca0793f6d3f58de4e0b97667">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#ad9dbc77e93467c95ebda908b53e9a9d1">gridfire::reaction::ReactionSet</a></li>
+<li>all_species()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a6e567323ca019eadcbb9dbb814ebeb0b">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a445777acbbee2032d83a256181a90e3c">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#aa13cd9097229fcc99128d9286b8f17e6">gridfire::reaction::Reaction</a></li>
+<li>analyzeTimescalePoolConnectivity()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a8d4153f520b486dbb262888e22b95896">gridfire::engine::MultiscalePartitioningEngineView</a></li>
+<li>AndTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a969738baf0bda97664715937d4bc403e">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>AtomicReverseRate()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#a29639c336e8a6786ec2edea98915c0a4">gridfire::engine::GraphEngine::AtomicReverseRate</a></li>
+<li>AtomicWeakRate()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#a46d76ca50ee00198a9f4a873c6ceb874">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></li>
+<li>available_isotopes()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#a976f84b6f6e33b5f3dd733a771afd7ba">gridfire::rates::weak::WeakRateInterpolator</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
   </ul>
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diff --git a/docs/html/functions_func_b.html b/docs/html/functions_func_b.html
index 1bab28f0..24092e5f 100644
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-<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="generator" content="Doxygen 1.9.8"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
 <title>GridFire: Class Members - Functions</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
 <link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
 <script type="text/javascript" src="navtreedata.js"></script>
 <script type="text/javascript" src="navtree.js"></script>
-<script type="text/javascript" src="resize.js"></script>
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 <script type="text/javascript" src="search/searchdata.js"></script>
 <script type="text/javascript" src="search/search.js"></script>
@@ -29,7 +27,7 @@
  <tbody>
  <tr id="projectrow">
   <td id="projectalign">
-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
    </div>
    <div id="projectbrief">General Purpose Nuclear Network</div>
   </td>
@@ -38,24 +36,19 @@
 </table>
 </div>
 <!-- end header part -->
-<!-- Generated by Doxygen 1.13.2 -->
+<!-- Generated by Doxygen 1.9.8 -->
 <script type="text/javascript">
 /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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 /* @license-end */
 </script>
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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-/* @license-end */
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 <script type="text/javascript">
 /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
 $(function() {
-  initMenu('',true,false,'search.php','Search',true);
-  $(function() { init_search(); });
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
 });
 /* @license-end */
 </script>
@@ -73,7 +66,7 @@ $(function() {
 </div>
 <script type="text/javascript">
 /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
-$(function(){initNavTree('functions_func_b.html',''); initResizable(true); });
+$(document).ready(function(){initNavTree('functions_func_b.html',''); initResizable(); });
 /* @license-end */
 </script>
 <div id="doc-content">
@@ -102,16 +95,16 @@ $(function(){initNavTree('functions_func_b.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
 <h3><a id="index_b" name="index_b"></a>- b -</h3><ul>
-<li>begin()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613">gridfire::engine::ReactionSet</a>, <a class="el" href="classgridfire_1_1policy_1_1_multi_reaction_chain_policy.html#a2317c6351bb1fc07ff0a27cd358b4f73">gridfire::policy::MultiReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a1353d7d2208497b38799bf69f574c275">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a228f2a00f46a6ee01be887490a722613">gridfire::reaction::ReactionSet</a></li>
-<li>build_partition_function()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1_main_sequence_policy.html#a5f38cd1549544854e60c2c7a847c0ea7">gridfire::policy::MainSequencePolicy</a></li>
-<li>buildConnectivityGraph()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view.html#a35482c1d5f1d2b3f2cd6c3976432644e">gridfire::engine::MultiscalePartitioningEngineView</a></li>
+<li>begin()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a2317c6351bb1fc07ff0a27cd358b4f73">gridfire::policy::MultiReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a1353d7d2208497b38799bf69f574c275">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a228f2a00f46a6ee01be887490a722613">gridfire::reaction::ReactionSet</a></li>
+<li>build_partition_function()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a5f38cd1549544854e60c2c7a847c0ea7">gridfire::policy::MainSequencePolicy</a></li>
+<li>buildConnectivityGraph()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a35482c1d5f1d2b3f2cd6c3976432644e">gridfire::engine::MultiscalePartitioningEngineView</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
   </ul>
 </div>
 </body>
diff --git a/docs/html/functions_func_c.html b/docs/html/functions_func_c.html
index f72fa4fb..ad81649b 100644
--- a/docs/html/functions_func_c.html
+++ b/docs/html/functions_func_c.html
@@ -3,18 +3,16 @@
 <head>
 <meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
 <meta http-equiv="X-UA-Compatible" content="IE=11"/>
-<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="generator" content="Doxygen 1.9.8"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
 <title>GridFire: Class Members - Functions</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
 <link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
 <script type="text/javascript" src="navtreedata.js"></script>
 <script type="text/javascript" src="navtree.js"></script>
-<script type="text/javascript" src="resize.js"></script>
-<script type="text/javascript" src="cookie.js"></script>
 <link href="search/search.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="search/searchdata.js"></script>
 <script type="text/javascript" src="search/search.js"></script>
@@ -29,7 +27,7 @@
  <tbody>
  <tr id="projectrow">
   <td id="projectalign">
-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
    </div>
    <div id="projectbrief">General Purpose Nuclear Network</div>
   </td>
@@ -38,24 +36,19 @@
 </table>
 </div>
 <!-- end header part -->
-<!-- Generated by Doxygen 1.13.2 -->
+<!-- Generated by Doxygen 1.9.8 -->
 <script type="text/javascript">
 /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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 <script type="text/javascript" src="menudata.js"></script>
 <script type="text/javascript" src="menu.js"></script>
 <script type="text/javascript">
 /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
 $(function() {
-  initMenu('',true,false,'search.php','Search',true);
-  $(function() { init_search(); });
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
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 /* @license-end */
 </script>
@@ -73,7 +66,7 @@ $(function() {
 </div>
 <script type="text/javascript">
 /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
-$(function(){initNavTree('functions_func_c.html',''); initResizable(true); });
+$(document).ready(function(){initNavTree('functions_func_c.html',''); initResizable(); });
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 <div id="doc-content">
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-<li>calculate_log_rate_partial_deriv_wrt_T9()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_reaction.html#aec9859c030364e1d4a740197514731db">gridfire::engine::Reaction</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac2d5366d4b5766413db34558dbce3cb3">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a9b1363314159eaf9c56aaa233f5eebd6">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ada6ec1ae05b9a92b58e6a4ecdf5a1656">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa2b615e764bb005e526ca9327319c735">gridfire::reaction::Reaction</a></li>
-<li>calculate_rate()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_reaction.html#abb3e2b9c5404f45fc5656eeac1d06a6c">gridfire::engine::Reaction</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a05df0657efed55eb4262c7834d81400a">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ac21a726884930e6a00792e7c3eb43f42">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#acd16b1daf13456b3523362a37b1bf9b0">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a83c121480533593adfd68c4a67a649f1">gridfire::reaction::Reaction</a></li>
-<li>calculate_rhs()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a460c2d19b468769770ec14e52684c0c8">gridfire::solver::CVODESolverStrategy</a></li>
-<li>calculateAllDerivatives()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#a5970c97be4c7b5b764ce1155b5c7f870">gridfire::engine::GraphEngine</a></li>
-<li>calculateAllDerivativesUsingPrecomputation()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#abdd3ea788cbe3448b11969c7bbe09546">gridfire::engine::GraphEngine</a></li>
-<li>calculateAllReactionFlows()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_adaptive_engine_view.html#a6f13f42773dec03a6b3e90b4997d42fb">gridfire::engine::AdaptiveEngineView</a></li>
-<li>calculateEpsDerivatives()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_adaptive_engine_view.html#a17bbc9c0d480a8533acb193cb9a46fea">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1_defined_engine_view.html#a2a866a7ba9572d36efab8efe72a063f5">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1_dynamic_engine.html#ada6a1295a92c2aede841672ecae0cede">gridfire::engine::DynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#ac7e4624ed6eee72e7a8df42381d098bb">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view.html#ac720fcea2f0304c3d7e7ba8a6dfb84da">gridfire::engine::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a6832a7898da51017a20f578e33cba729">PyDynamicEngine</a></li>
-<li>calculateFactors_impl()&#160;:&#160;<a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a48a3392d735c61b15b4855c823acfada">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html#a794b7781f07343383da3894208cfbfa9">gridfire::screening::IntermediateScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#aa9f95ba8c052dacb72295775516b7e5f">gridfire::screening::WeakScreeningModel</a></li>
-<li>calculateMolarReactionFlow()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_adaptive_engine_view.html#a5bd0174105e836dd98c71ab495357e5b">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1_defined_engine_view.html#a2f0ad1febc467bce87b5c6ad29b059fb">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1_dynamic_engine.html#aa57fa5e58b98a03fba31bcddda8001d4">gridfire::engine::DynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#aaff9cdc04ca01e7c927d36476bcf5da4">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view.html#af030c9bd6a95686a09429b4619ad188c">gridfire::engine::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a8facba88b6df6e016ce53a0ff3cff125">PyDynamicEngine</a></li>
-<li>calculateReverseMolarReactionFlow()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#a2e7012382ee44473478ebc37ac36695c">gridfire::engine::GraphEngine</a></li>
-<li>calculateReverseRate()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#a4dd5733c77e9a7ad8b5e541c187fabae">gridfire::engine::GraphEngine</a></li>
-<li>calculateReverseRateTwoBody()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#aa6b07108beeab1bc75c3099c25be7833">gridfire::engine::GraphEngine</a></li>
-<li>calculateReverseRateTwoBodyDerivative()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#a83ef40080c62d667b3fee71237efd2e0">gridfire::engine::GraphEngine</a></li>
-<li>calculateRHSAndEnergy()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_adaptive_engine_view.html#a5de5211bc99a1995143307284be6df4a">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1_defined_engine_view.html#a82cbef591ef1aafcb9a42e01bf38fc38">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1_engine.html#a764fc091c72c12c8529105d7c96badb2">gridfire::engine::Engine</a>, <a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#aee098a65f5cecded199d2c00422b398d">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view.html#aa960005503d18066015aef280680d616">gridfire::engine::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#aac1f2005c0a58befc4e01627c9357924">PyDynamicEngine</a>, <a class="el" href="class_py_engine.html#abc26a86d4f93b37564d32814edbbac4d">PyEngine</a></li>
-<li>calculateScreeningFactors()&#160;:&#160;<a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ad252ce1de82401bab24747aabf0c8a3a">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html#a86a218ce82306ed582296cbeb3de0250">gridfire::screening::IntermediateScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#ab08c4490f9da18254a7c6f29be1f62ce">gridfire::screening::ScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#a6a215d082b0d05126fb2b19fd1983446">gridfire::screening::WeakScreeningModel</a>, <a class="el" href="class_py_screening.html#aa67b5f0528006d9c742033b8c5ab3a05">PyScreening</a></li>
-<li>chapter()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#abe189c43e4d509d9d05dd205861ceddc">gridfire::reaction::ReaclibReaction</a></li>
-<li>check()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#aaefdfa86856f9f7839b6a7fdffa4a579">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a69fbb099f8d13d39602f58fa8aa8e7f2">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#ae453a72df20fdd416443ef7867f86b92">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#ac8be54d91e77ed16ae3cca2417d82e0a">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#ae8765656a45319335c2bb90c3fb3d308">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a3855b15459217383647ecdf12bc35775">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a50df7fefee167390522aa258fa6ee960">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a04598611b0807cad395bdd2fbc41a6c2">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a1579ffb1c841cda4e67990b42d400d88">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
-<li>check_status()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1_main_sequence_policy.html#af5101829bcb344aa29ea65983732333d">gridfire::policy::MainSequencePolicy</a></li>
-<li>cleanup_cvode_resources()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a7f6786780137de1a136e081c537a9667">gridfire::solver::CVODESolverStrategy</a></li>
-<li>clear()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300">gridfire::engine::ReactionSet</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#aa8e0d65aafc6e0320690b4906e1bf300">gridfire::reaction::ReactionSet</a></li>
-<li>clone()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_reaction.html#a588a8c19970463d97f5aa333fcd312dc">gridfire::engine::Reaction</a>, <a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#a7b000d55c7d1f489e54a57f7f4e3808a">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#ade2b0f92a3d9b74968166793466a11e4">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#a677a90f992fd56b8718e36655c33ce6d">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#ad229cac0a84df5ebbcaf0550f83debf6">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_chain_policy.html#a83042f4626ec22810314fa5181d3392a">gridfire::policy::CNOIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_i_chain_policy.html#ab3aa5daaf2d9274770f981d8f67ae20b">gridfire::policy::CNOIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_i_i_chain_policy.html#a9c0e056615742b3d77f47b3eb676ff28">gridfire::policy::CNOIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_v_chain_policy.html#a35bef8035035eb85bb188ede6045556c">gridfire::policy::CNOIVChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_hot_c_n_o_i_chain_policy.html#ae70a448fdeee35e159784fd6a506dce7">gridfire::policy::HotCNOIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_hot_c_n_o_i_i_chain_policy.html#afeb9b237b70963715adc64ad68e11675">gridfire::policy::HotCNOIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_hot_c_n_o_i_i_i_chain_policy.html#a5d86341bb4370647762c889519793d41">gridfire::policy::HotCNOIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_multi_reaction_chain_policy.html#ab3bbbf21164211a01c5398a0ee281bb2">gridfire::policy::MultiReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_proton_proton_i_chain_policy.html#affd234a60ba31decca25b3367c7ede5e">gridfire::policy::ProtonProtonIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_proton_proton_i_i_chain_policy.html#ad70b081f8623fad207050c0f81f6a457">gridfire::policy::ProtonProtonIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_proton_proton_i_i_i_chain_policy.html#ac84ab054fc0f600f783ea3282d6fd4f6">gridfire::policy::ProtonProtonIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_reaction_chain_policy.html#ac24ff49b7715ad3eefea4bed1bf23686">gridfire::policy::ReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_triple_alpha_chain_policy.html#a447ff0d2de9df09400e63f0fc087efa3">gridfire::policy::TripleAlphaChainPolicy</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#ac10e1451d20876f6eab199e127f213c7">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad113b9cb64c449f9449c4cce4fa64076">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a54fde02e7010e806136f976ab64b1740">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab95ce7fb022a9432bdc77f14679221ee">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_weak_reaclib_reaction.html#ac3fc463a1cea6854ea989732e1e5f65a">gridfire::reaction::WeakReaclibReaction</a>, <a class="el" href="class_py_partition_function.html#af918b357e38fb82499ad53584557c43d">PyPartitionFunction</a>, <a class="el" href="class_py_reaction_chain_policy.html#a0b44991bd6a5edebb861e78a26f783cd">PyReactionChainPolicy</a></li>
-<li>CNOChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1_c_n_o_chain_policy.html#a5a526c6239c3a321c81484061a7a53e4">gridfire::policy::CNOChainPolicy</a></li>
-<li>CNOIChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_chain_policy.html#a7b428233b7cd85bac48c0b4906f990ce">gridfire::policy::CNOIChainPolicy</a></li>
-<li>CNOIIChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_i_chain_policy.html#aebcb36cb5cfbde4cf0e5b785c4b8cbd8">gridfire::policy::CNOIIChainPolicy</a></li>
-<li>CNOIIIChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_i_i_chain_policy.html#af5ba73b9349e97fd1e2876ce9e9fac0b">gridfire::policy::CNOIIIChainPolicy</a></li>
-<li>CNOIVChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_v_chain_policy.html#a3a73e280dca833ff6517bef9b9193aa1">gridfire::policy::CNOIVChainPolicy</a></li>
-<li>collect()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_defined_engine_view.html#a38191e2b3b219d348eba0109dce271c3">gridfire::engine::DefinedEngineView</a></li>
-<li>collectAtomicReverseRateAtomicBases()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#a5fadd1bb2692e1527ce24295c77cfc72">gridfire::engine::GraphEngine</a></li>
-<li>collectComposition()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_adaptive_engine_view.html#a77d4c08eecfad5cc414161d0fc8db946">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1_defined_engine_view.html#a25dc44af1a58561b665103b16abe9bbc">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1_dynamic_engine.html#a41877719ae5e8de53c1692c7cf9bfbfc">gridfire::engine::DynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#ae9d4d99c791876c012697fe5a0ba06c8">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view.html#a97d9616558f681ad010ee452394f3519">gridfire::engine::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#a239826d90cb5db236e68230f7ac84bcb">PyDynamicEngine</a></li>
-<li>collectNetworkSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#a8f29c77e777fdc6517f2c7778537ba6f">gridfire::engine::GraphEngine</a></li>
-<li>Column()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1_column.html#a7d7e4f4cf6f8e03725afeb9f664321b8">gridfire::utils::Column&lt; T &gt;</a></li>
-<li>CompositePartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#ad80743933712de627c6a69d06d42ceb5">gridfire::partition::CompositePartitionFunction</a></li>
-<li>construct()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1_main_sequence_policy.html#aa9b4e39dacada73756bfd78885da60bd">gridfire::policy::MainSequencePolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_network_policy.html#a13cd74c967592392b01d8fe9a5b34d88">gridfire::policy::NetworkPolicy</a>, <a class="el" href="class_py_network_policy.html#a6871d8aae79db9b784d40b05225b3445">PyNetworkPolicy</a></li>
-<li>constructCandidateGroups()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view.html#a28502c9e8fc0a40211fd3717c2b67214">gridfire::engine::MultiscalePartitioningEngineView</a></li>
-<li>constructPrimingReactionSet()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_network_priming_engine_view.html#acaf9433246a58f2365c5bd8907cbacbb">gridfire::engine::NetworkPrimingEngineView</a></li>
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-<li>constructSpeciesIndexMap()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_defined_engine_view.html#a20b54c8b13616982eddb3ae3979b842d">gridfire::engine::DefinedEngineView</a></li>
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-<li>ConvergenceFailureTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#a63010d8ba73689dda0c2228a1462aae2">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></li>
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-<li>current_mean()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#a3d8d9eafff17ea6a283afbc7e8b450bb">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></li>
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+<li>calculate_log_rate_partial_deriv_wrt_T9()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#ac2d5366d4b5766413db34558dbce3cb3">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a9b1363314159eaf9c56aaa233f5eebd6">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ada6ec1ae05b9a92b58e6a4ecdf5a1656">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#aa2b615e764bb005e526ca9327319c735">gridfire::reaction::Reaction</a></li>
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+<li>calculateAllDerivativesUsingPrecomputation()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#abdd3ea788cbe3448b11969c7bbe09546">gridfire::engine::GraphEngine</a></li>
+<li>calculateAllReactionFlows()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a6f13f42773dec03a6b3e90b4997d42fb">gridfire::engine::AdaptiveEngineView</a></li>
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+<li>calculateFactors_impl()&#160;:&#160;<a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#a48a3392d735c61b15b4855c823acfada">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1IntermediateScreeningModel.html#a794b7781f07343383da3894208cfbfa9">gridfire::screening::IntermediateScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html#aa9f95ba8c052dacb72295775516b7e5f">gridfire::screening::WeakScreeningModel</a></li>
+<li>calculateMolarReactionFlow()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a5bd0174105e836dd98c71ab495357e5b">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a2f0ad1febc467bce87b5c6ad29b059fb">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#aa57fa5e58b98a03fba31bcddda8001d4">gridfire::engine::DynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#aaff9cdc04ca01e7c927d36476bcf5da4">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#af030c9bd6a95686a09429b4619ad188c">gridfire::engine::MultiscalePartitioningEngineView</a>, <a class="el" href="classPyDynamicEngine.html#a8facba88b6df6e016ce53a0ff3cff125">PyDynamicEngine</a></li>
+<li>calculateReverseMolarReactionFlow()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a2e7012382ee44473478ebc37ac36695c">gridfire::engine::GraphEngine</a></li>
+<li>calculateReverseRate()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a4dd5733c77e9a7ad8b5e541c187fabae">gridfire::engine::GraphEngine</a></li>
+<li>calculateReverseRateTwoBody()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#aa6b07108beeab1bc75c3099c25be7833">gridfire::engine::GraphEngine</a></li>
+<li>calculateReverseRateTwoBodyDerivative()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a83ef40080c62d667b3fee71237efd2e0">gridfire::engine::GraphEngine</a></li>
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+<li>check_status()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#af5101829bcb344aa29ea65983732333d">gridfire::policy::MainSequencePolicy</a></li>
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+<li>clear()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#aa8e0d65aafc6e0320690b4906e1bf300">gridfire::reaction::ReactionSet</a></li>
+<li>clone()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a7b000d55c7d1f489e54a57f7f4e3808a">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#ade2b0f92a3d9b74968166793466a11e4">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a677a90f992fd56b8718e36655c33ce6d">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#ad229cac0a84df5ebbcaf0550f83debf6">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIChainPolicy.html#a83042f4626ec22810314fa5181d3392a">gridfire::policy::CNOIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html#ab3aa5daaf2d9274770f981d8f67ae20b">gridfire::policy::CNOIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIIIChainPolicy.html#a9c0e056615742b3d77f47b3eb676ff28">gridfire::policy::CNOIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html#a35bef8035035eb85bb188ede6045556c">gridfire::policy::CNOIVChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html#ae70a448fdeee35e159784fd6a506dce7">gridfire::policy::HotCNOIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html#afeb9b237b70963715adc64ad68e11675">gridfire::policy::HotCNOIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html#a5d86341bb4370647762c889519793d41">gridfire::policy::HotCNOIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab3bbbf21164211a01c5398a0ee281bb2">gridfire::policy::MultiReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html#affd234a60ba31decca25b3367c7ede5e">gridfire::policy::ProtonProtonIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html#ad70b081f8623fad207050c0f81f6a457">gridfire::policy::ProtonProtonIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html#ac84ab054fc0f600f783ea3282d6fd4f6">gridfire::policy::ProtonProtonIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac24ff49b7715ad3eefea4bed1bf23686">gridfire::policy::ReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html#a447ff0d2de9df09400e63f0fc087efa3">gridfire::policy::TripleAlphaChainPolicy</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#ac10e1451d20876f6eab199e127f213c7">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#ad113b9cb64c449f9449c4cce4fa64076">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a54fde02e7010e806136f976ab64b1740">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab95ce7fb022a9432bdc77f14679221ee">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html#ac3fc463a1cea6854ea989732e1e5f65a">gridfire::reaction::WeakReaclibReaction</a>, <a class="el" href="classPyPartitionFunction.html#af918b357e38fb82499ad53584557c43d">PyPartitionFunction</a>, <a class="el" href="classPyReactionChainPolicy.html#a0b44991bd6a5edebb861e78a26f783cd">PyReactionChainPolicy</a></li>
+<li>CNOChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1CNOChainPolicy.html#a5a526c6239c3a321c81484061a7a53e4">gridfire::policy::CNOChainPolicy</a></li>
+<li>CNOIChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1CNOIChainPolicy.html#a7b428233b7cd85bac48c0b4906f990ce">gridfire::policy::CNOIChainPolicy</a></li>
+<li>CNOIIChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html#aebcb36cb5cfbde4cf0e5b785c4b8cbd8">gridfire::policy::CNOIIChainPolicy</a></li>
+<li>CNOIIIChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1CNOIIIChainPolicy.html#af5ba73b9349e97fd1e2876ce9e9fac0b">gridfire::policy::CNOIIIChainPolicy</a></li>
+<li>CNOIVChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html#a3a73e280dca833ff6517bef9b9193aa1">gridfire::policy::CNOIVChainPolicy</a></li>
+<li>collect()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a38191e2b3b219d348eba0109dce271c3">gridfire::engine::DefinedEngineView</a></li>
+<li>collectAtomicReverseRateAtomicBases()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a5fadd1bb2692e1527ce24295c77cfc72">gridfire::engine::GraphEngine</a></li>
+<li>collectComposition()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a77d4c08eecfad5cc414161d0fc8db946">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a25dc44af1a58561b665103b16abe9bbc">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a41877719ae5e8de53c1692c7cf9bfbfc">gridfire::engine::DynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#ae9d4d99c791876c012697fe5a0ba06c8">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a97d9616558f681ad010ee452394f3519">gridfire::engine::MultiscalePartitioningEngineView</a>, <a class="el" href="classPyDynamicEngine.html#a239826d90cb5db236e68230f7ac84bcb">PyDynamicEngine</a></li>
+<li>collectNetworkSpecies()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a8f29c77e777fdc6517f2c7778537ba6f">gridfire::engine::GraphEngine</a></li>
+<li>Column()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1Column.html#a7d7e4f4cf6f8e03725afeb9f664321b8">gridfire::utils::Column&lt; T &gt;</a></li>
+<li>CompositePartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#ad80743933712de627c6a69d06d42ceb5">gridfire::partition::CompositePartitionFunction</a></li>
+<li>construct()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#aa9b4e39dacada73756bfd78885da60bd">gridfire::policy::MainSequencePolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a13cd74c967592392b01d8fe9a5b34d88">gridfire::policy::NetworkPolicy</a>, <a class="el" href="classPyNetworkPolicy.html#a6871d8aae79db9b784d40b05225b3445">PyNetworkPolicy</a></li>
+<li>constructCandidateGroups()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a28502c9e8fc0a40211fd3717c2b67214">gridfire::engine::MultiscalePartitioningEngineView</a></li>
+<li>constructPrimingReactionSet()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#acaf9433246a58f2365c5bd8907cbacbb">gridfire::engine::NetworkPrimingEngineView</a></li>
+<li>constructReactionIndexMap()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a8464c50142f34583201c4abc7fbcba36">gridfire::engine::DefinedEngineView</a></li>
+<li>constructSpeciesIndexMap()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a20b54c8b13616982eddb3ae3979b842d">gridfire::engine::DefinedEngineView</a></li>
+<li>contains()&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a64018f4dd6c225b0790a0fd4065a0972">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a>, <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a792cf0af8e5c365d0332cd585968dae1">gridfire::policy::MultiReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a0c9a42646920ac02c8d1e63dfe6f9461">gridfire::policy::ReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a8984d58dee6865d4bd98aedf31bb445e">gridfire::policy::TemperatureDependentChainPolicy</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a745b161968f37873b5d40fe6bf9d2118">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a171b690e1abaf23f11a94c39e9f8c944">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a768db057d358240d4825c21869af0792">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a2f6b165c86634a68f35032c2267255f8">gridfire::reaction::ReactionSet</a>, <a class="el" href="classPyReactionChainPolicy.html#a16f289efd1d92eead3a3ca6fcfceba4d">PyReactionChainPolicy</a></li>
+<li>contains_product()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a957b5bfe70e536290ef677a7c5b6643f">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a4e4811436d09afaa4a14c51d9af71f88">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a2708d2e8f42159df6605a5948b13c4c5">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a4bdf50219d686a6cbc0b3cc5365dc18e">gridfire::reaction::ReactionSet</a></li>
+<li>contains_reactant()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a98095e6536d9a6434c5955f4c169d505">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a65a12e5f6180873866cfaaf130fd1156">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab28bf4f9417ecabcc8350bae449fedd5">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a256998eddf292f744d51cdc3e178d4c2">gridfire::reaction::ReactionSet</a></li>
+<li>contains_species()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a5b872a8519740a6d06cfaed03784826a">gridfire::reaction::ReactionSet</a></li>
+<li>containsAlgebraic()&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a553a39a2a8e6cea1d6f849cb7097fee6">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></li>
+<li>containsSeed()&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#aa65229a4974b74ce4fc3f7c0544fbe91">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></li>
+<li>ConvergenceFailureTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a63010d8ba73689dda0c2228a1462aae2">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></li>
+<li>countProductOccurrences()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aeba08ed8204fc4999dc0324076d67d2a">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#abe3ab72b2577cbe0f87436b063ce812c">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a62fc82b29bacc10cfbceaa1571b14525">gridfire::reaction::Reaction</a></li>
+<li>countReactantOccurrences()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#acfc3740ed0aa72986b2c1bc2666974d6">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a79928f9c52822202b3156bd145e35ad8">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a036773e4dc917facbf2308dbbe853633">gridfire::reaction::Reaction</a></li>
+<li>cullReactionsByFlow()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a99ffb65b98dcbc1eae8643c25dbffe91">gridfire::engine::AdaptiveEngineView</a></li>
+<li>current_mean()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a3d8d9eafff17ea6a283afbc7e8b450bb">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></li>
+<li>cvode_jac_wrapper()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#ae13fc9c21f595edbee1c9b7debaa61b3">gridfire::solver::CVODESolverStrategy</a></li>
+<li>cvode_rhs_wrapper()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a14c620ef75749c8ef3dfdb84132e5620">gridfire::solver::CVODESolverStrategy</a></li>
+<li>CVODESolverStrategy()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a8beeb102d8e459cd133cd1bd5fb7e135">gridfire::solver::CVODESolverStrategy</a></li>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+<script type="text/javascript" src="resize.js"></script>
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-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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    <div id="projectbrief">General Purpose Nuclear Network</div>
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-<!-- Generated by Doxygen 1.13.2 -->
+<!-- Generated by Doxygen 1.9.8 -->
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+$(document).ready(function(){initNavTree('functions_func_d.html',''); initResizable(); });
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@@ -102,18 +95,18 @@ $(function(){initNavTree('functions_func_d.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
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-<li>data()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html#adb5643398b6f5fbf0ab8f09580b93402">gridfire::engine::NetworkJacobian</a></li>
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+<li>data()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#adb5643398b6f5fbf0ab8f09580b93402">gridfire::engine::NetworkJacobian</a></li>
+<li>DebugException()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1DebugException.html#a4c9767a6ef00a5b185ee121f79775b0c">gridfire::exceptions::DebugException</a></li>
+<li>DefinedEngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ada2f326789dc8ae8305617c8d700ae05">gridfire::engine::DefinedEngineView</a></li>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+<script type="text/javascript" src="resize.js"></script>
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-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
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+<li>EveryNthTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a69e5a3061926e1cd36fbd0a5285fa0a7">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>evolve()&#160;:&#160;<a class="el" href="structgridfire__mod_1_1gridfire.html#a6d864e135a5c93f3c57eafbc3622a6aa">gridfire_mod::gridfire</a>, <a class="el" href="structGridFireContext.html#a1b75911fd12ec1cd83d20d91df621bee">GridFireContext</a></li>
+<li>excess_energy()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a0b30c49925823c87980b4fca17c8282e">gridfire::reaction::ReaclibReaction</a></li>
+<li>exportToCSV()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a2c0c50ba51537a2f565183e2f47eef69">gridfire::engine::GraphEngine</a></li>
+<li>exportToDot()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a77d9755e68c81279316c96e6bb160ee4">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#accbf5a67f126627833a4169a81f1be01">gridfire::engine::MultiscalePartitioningEngineView</a></li>
+<li>extend()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a6a4836776f5dd00158d2336e5bcc3222">gridfire::reaction::ReactionSet</a></li>
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+<li>mapViewToFullReactionIndex()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#afa9aeb6d11645e4b9cecf56fb63b51ef">gridfire::engine::DefinedEngineView</a></li>
+<li>mapViewToFullSpeciesIndex()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ad6986fa5cda1d9ed9d4f54f444f402e8">gridfire::engine::DefinedEngineView</a></li>
+<li>merge_coupled_groups()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a4da0432598ecb0415b70b94d8300d3ef">gridfire::engine::MultiscalePartitioningEngineView</a></li>
+<li>MESANetworkFileParser()&#160;:&#160;<a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html#ac5963d0da6780de753df996b490f8d2c">gridfire::io::MESANetworkFileParser</a></li>
+<li>MultiReactionChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ab0e3ba293b5e52d595dfa02db4fcbee7">gridfire::policy::MultiReactionChainPolicy</a></li>
+<li>MultiscalePartitioningEngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a0a500b19283ad3dd654ca4c4646b2604">gridfire::engine::MultiscalePartitioningEngineView</a></li>
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 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/functions_func_n.html b/docs/html/functions_func_n.html
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 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
 <h3><a id="index_n" name="index_n"></a>- n -</h3><ul>
-<li>name()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1_c_n_o_chain_policy.html#a66511726b37f0e114cba2dd15db42440">gridfire::policy::CNOChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_chain_policy.html#ad3d4721e3046d792c0aa8e5c6c99aa2d">gridfire::policy::CNOIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_i_chain_policy.html#a6bf1057d28cb37db4f9ffde9cb3815ed">gridfire::policy::CNOIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_i_i_chain_policy.html#a96abfb16ec2b692c070da139444435e3">gridfire::policy::CNOIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_v_chain_policy.html#a101a884a8ead5d961fd5d43a0dbffde8">gridfire::policy::CNOIVChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_hot_c_n_o_chain_policy.html#a95e2f3c1a32b3f2dd5d5601c2a81f42f">gridfire::policy::HotCNOChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_hot_c_n_o_i_chain_policy.html#a13b2857d96e42f162888dcc294a27b9b">gridfire::policy::HotCNOIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_hot_c_n_o_i_i_chain_policy.html#a262a18dafbc68db925beefb14c43668f">gridfire::policy::HotCNOIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_hot_c_n_o_i_i_i_chain_policy.html#a59168da23f2d6b4d8667f5118153b514">gridfire::policy::HotCNOIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_main_sequence_policy.html#a6520ddfead2ba2700e2b1329774b4ff6">gridfire::policy::MainSequencePolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_main_sequence_reaction_chain_policy.html#a7411e9a885d7ebb79590d8e1c5834881">gridfire::policy::MainSequenceReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_multi_reaction_chain_policy.html#ac21f837d0d452d32588451f48d5482e6">gridfire::policy::MultiReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_network_policy.html#aa59c1baf7077a5d35d45ff753b32a565">gridfire::policy::NetworkPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_proton_proton_chain_policy.html#a2e818c9a269bc859b01985fea8423ac0">gridfire::policy::ProtonProtonChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_proton_proton_i_chain_policy.html#ab9542fd71e87159216cdd51501b6d1d3">gridfire::policy::ProtonProtonIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_proton_proton_i_i_chain_policy.html#a2782c6abea3596cf566a246239b96f80">gridfire::policy::ProtonProtonIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_proton_proton_i_i_i_chain_policy.html#a06d103e970b19c9a40cbae8d52ef0d0c">gridfire::policy::ProtonProtonIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_reaction_chain_policy.html#a41758d921a2d7e83f446aa4fec00d598">gridfire::policy::ReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_triple_alpha_chain_policy.html#a2d6543b9fa7f96b8b21d7e7545f9a22d">gridfire::policy::TripleAlphaChainPolicy</a>, <a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#ab78539e5cd88194ab9e98434793eae3f">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a4a834d24286f9204995bf78fb69f35dc">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#acc3bd2938f7746997fb1d255681d8b20">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a062af4f567dc48c088f1fcfb64cc79ec">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#a92a57cea3b58bd7948c3c3fb4f75619b">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a594893c029f044be3119118808470f7a">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a87fc9fe6bd8762f148c858452ec30043">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a290e5643eea08726d2fd44a1cd5617d0">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a3e5b017147f22ca0733733cd39e334b7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="class_py_network_policy.html#ac2c1ef3897e6491d5ab03e7342075245">PyNetworkPolicy</a>, <a class="el" href="class_py_reaction_chain_policy.html#af148bf87fea9ebe61de745913a2fd504">PyReactionChainPolicy</a></li>
-<li>nans()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html#a9292384722bcb0245acab9affcdb8c6d">gridfire::engine::NetworkJacobian</a></li>
-<li>ncols()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1_table.html#afd3ddec237e460916d2245b3f52c68ad">gridfire::utils::Table&lt; T &gt;</a>, <a class="el" href="classgridfire_1_1utils_1_1_table_base.html#af1a64a10395240ae527c33de5555e91b">gridfire::utils::TableBase</a></li>
-<li>NetworkJacobian()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html#aee558bd90f26fdb6172a04fb63d2572e">gridfire::engine::NetworkJacobian</a></li>
-<li>NetworkPrimingEngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_network_priming_engine_view.html#ad4eec8af1ab1f918fd4e92fac47adaf4">gridfire::engine::NetworkPrimingEngineView</a></li>
-<li>NetworkSolverStrategy()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></li>
-<li>nnz()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html#a2016fcfe27363650817b5be1ce6aaa32">gridfire::engine::NetworkJacobian</a></li>
-<li>NotTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a4828599aae5ff37f4c82e51fe192bed3">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></li>
-<li>nrows()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1_table.html#adc88ced7876f48aada9bc3cf73163567">gridfire::utils::Table&lt; T &gt;</a>, <a class="el" href="classgridfire_1_1utils_1_1_table_base.html#a271f10ae6349dc5a6e37f27f1d580752">gridfire::utils::TableBase</a></li>
-<li>num_species()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_reaction.html#a348aae35a6c82194ef5387278419e0e6">gridfire::engine::Reaction</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1210917ca1727ea474bb606cf8279edb">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a9205126955ad38f56e8aca3112bc150a">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ae2a1b0395ac127c792a8049cd0bcc249">gridfire::reaction::Reaction</a></li>
-<li>numMisses()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#addfd61f8cb234881f535fb8f4d618d74">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#ae7776f4a526db3245e64a74a3b0172d3">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a2f9b0d6a6ac54f6371c5a208c06826ea">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a0b3a7f45604dbb27e832d9559dd20997">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#aa26bf911c73b7f2ec343d473caf13718">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a0e1ad148f9f3232992a4b16e440c249a">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a273eb8a3e80d1235d2b3f252e55c5b50">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a94bb1de08a5ff55e1874f595f8c8965c">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a81848e5af844795d879b6d885a2701d7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
-<li>numTriggers()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#afffb4281569963183d7db3ed1568eb3a">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a7e5568c9d7799b7f80ad0d3efe2cd143">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#ae2d27d72af9e1fbf711a58e4583b43a3">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#afc7d3eae8306ee383d76997ac3803327">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#aa7cc311316539b2d348422ba907dc64e">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a32980aaf6d9c7632c024b4b74b1d9e70">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a34d285584ea96f71b99eefad8c738296">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#ad2a7c2567b100f97a024f65818ecefed">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
+<li>name()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1CNOChainPolicy.html#a66511726b37f0e114cba2dd15db42440">gridfire::policy::CNOChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIChainPolicy.html#ad3d4721e3046d792c0aa8e5c6c99aa2d">gridfire::policy::CNOIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html#a6bf1057d28cb37db4f9ffde9cb3815ed">gridfire::policy::CNOIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIIIChainPolicy.html#a96abfb16ec2b692c070da139444435e3">gridfire::policy::CNOIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html#a101a884a8ead5d961fd5d43a0dbffde8">gridfire::policy::CNOIVChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1HotCNOChainPolicy.html#a95e2f3c1a32b3f2dd5d5601c2a81f42f">gridfire::policy::HotCNOChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html#a13b2857d96e42f162888dcc294a27b9b">gridfire::policy::HotCNOIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html#a262a18dafbc68db925beefb14c43668f">gridfire::policy::HotCNOIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html#a59168da23f2d6b4d8667f5118153b514">gridfire::policy::HotCNOIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html#a6520ddfead2ba2700e2b1329774b4ff6">gridfire::policy::MainSequencePolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html#a7411e9a885d7ebb79590d8e1c5834881">gridfire::policy::MainSequenceReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#ac21f837d0d452d32588451f48d5482e6">gridfire::policy::MultiReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#aa59c1baf7077a5d35d45ff753b32a565">gridfire::policy::NetworkPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html#a2e818c9a269bc859b01985fea8423ac0">gridfire::policy::ProtonProtonChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html#ab9542fd71e87159216cdd51501b6d1d3">gridfire::policy::ProtonProtonIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html#a2782c6abea3596cf566a246239b96f80">gridfire::policy::ProtonProtonIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html#a06d103e970b19c9a40cbae8d52ef0d0c">gridfire::policy::ProtonProtonIIIChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a41758d921a2d7e83f446aa4fec00d598">gridfire::policy::ReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html#a2d6543b9fa7f96b8b21d7e7545f9a22d">gridfire::policy::TripleAlphaChainPolicy</a>, <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#ab78539e5cd88194ab9e98434793eae3f">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a4a834d24286f9204995bf78fb69f35dc">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#acc3bd2938f7746997fb1d255681d8b20">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a062af4f567dc48c088f1fcfb64cc79ec">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a92a57cea3b58bd7948c3c3fb4f75619b">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a594893c029f044be3119118808470f7a">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a87fc9fe6bd8762f148c858452ec30043">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a290e5643eea08726d2fd44a1cd5617d0">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a3e5b017147f22ca0733733cd39e334b7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classPyNetworkPolicy.html#ac2c1ef3897e6491d5ab03e7342075245">PyNetworkPolicy</a>, <a class="el" href="classPyReactionChainPolicy.html#af148bf87fea9ebe61de745913a2fd504">PyReactionChainPolicy</a></li>
+<li>nans()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a9292384722bcb0245acab9affcdb8c6d">gridfire::engine::NetworkJacobian</a></li>
+<li>ncols()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1Table.html#afd3ddec237e460916d2245b3f52c68ad">gridfire::utils::Table&lt; T &gt;</a>, <a class="el" href="classgridfire_1_1utils_1_1TableBase.html#af1a64a10395240ae527c33de5555e91b">gridfire::utils::TableBase</a></li>
+<li>NetworkJacobian()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#aee558bd90f26fdb6172a04fb63d2572e">gridfire::engine::NetworkJacobian</a></li>
+<li>NetworkPrimingEngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#ad4eec8af1ab1f918fd4e92fac47adaf4">gridfire::engine::NetworkPrimingEngineView</a></li>
+<li>NetworkSolverStrategy()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a01cbbec0eb5c3a60f50da38cdaf66505">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></li>
+<li>nnz()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a2016fcfe27363650817b5be1ce6aaa32">gridfire::engine::NetworkJacobian</a></li>
+<li>NotTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a4828599aae5ff37f4c82e51fe192bed3">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>nrows()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1Table.html#adc88ced7876f48aada9bc3cf73163567">gridfire::utils::Table&lt; T &gt;</a>, <a class="el" href="classgridfire_1_1utils_1_1TableBase.html#a271f10ae6349dc5a6e37f27f1d580752">gridfire::utils::TableBase</a></li>
+<li>num_species()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a1210917ca1727ea474bb606cf8279edb">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a9205126955ad38f56e8aca3112bc150a">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ae2a1b0395ac127c792a8049cd0bcc249">gridfire::reaction::Reaction</a></li>
+<li>numMisses()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#addfd61f8cb234881f535fb8f4d618d74">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#ae7776f4a526db3245e64a74a3b0172d3">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a2f9b0d6a6ac54f6371c5a208c06826ea">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a0b3a7f45604dbb27e832d9559dd20997">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#aa26bf911c73b7f2ec343d473caf13718">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a0e1ad148f9f3232992a4b16e440c249a">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a273eb8a3e80d1235d2b3f252e55c5b50">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a94bb1de08a5ff55e1874f595f8c8965c">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a81848e5af844795d879b6d885a2701d7">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
+<li>numTriggers()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#afffb4281569963183d7db3ed1568eb3a">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a7e5568c9d7799b7f80ad0d3efe2cd143">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#ae2d27d72af9e1fbf711a58e4583b43a3">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#afc7d3eae8306ee383d76997ac3803327">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#aa7cc311316539b2d348422ba907dc64e">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a32980aaf6d9c7632c024b4b74b1d9e70">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a34d285584ea96f71b99eefad8c738296">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#ad2a7c2567b100f97a024f65818ecefed">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4ea3abfb76a09c4f55ad05d73a2cf12d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
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 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/functions_func_o.html b/docs/html/functions_func_o.html
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+<meta name="generator" content="Doxygen 1.9.8"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
 <title>GridFire: Class Members - Functions</title>
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 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
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+<script type="text/javascript" src="resize.js"></script>
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  <tbody>
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-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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    <div id="projectbrief">General Purpose Nuclear Network</div>
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-<!-- Generated by Doxygen 1.13.2 -->
+<!-- Generated by Doxygen 1.9.8 -->
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+$(document).ready(function(){initNavTree('functions_func_o.html',''); initResizable(); });
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 </script>
 <div id="doc-content">
@@ -102,22 +95,22 @@ $(function(){initNavTree('functions_func_o.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
 <h3><a id="index_o" name="index_o"></a>- o -</h3><ul>
-<li>OffDiagonalTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a6dc334b85ffb822880c6740dc457ea52">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></li>
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-<li>operator()()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html#a6aef41de3c48ac77ae991ca427ce46a9">gridfire::engine::NetworkJacobian</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4.html#abab92065d884b95cdddcc2f8f6fdd490">std::hash&lt; gridfire::rates::weak::TableAxes &gt;</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9">std::hash&lt; gridfire::reaction::Reaction &gt;</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921">std::hash&lt; gridfire::reaction::ReactionSet &gt;</a></li>
-<li>operator&lt;()&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#ac9f99ea2754b419d030e92c314fba4ed">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></li>
-<li>operator=()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_solver.html#a338cd55e34af1286f0f4593b04be7508">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a>, <a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html#ac5372d721127646e75c0f177661566f9">gridfire::engine::NetworkJacobian</a>, <a class="el" href="classgridfire_1_1engine_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a">gridfire::engine::ReactionSet</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#aac890bf7fdf689890d765ff67489520a">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#af500df838024c82724eaf7fe1cb9b8e8">gridfire::solver::CVODESolverStrategy</a></li>
-<li>operator==()&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a846d372046454aa0ff97a4c83d85b96d">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a>, <a class="el" href="classgridfire_1_1engine_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135">gridfire::engine::ReactionSet</a>, <a class="el" href="classgridfire_1_1policy_1_1_multi_reaction_chain_policy.html#abc3ed7c255b3e6c06e292aee8ef7f46d">gridfire::policy::MultiReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_reaction_chain_policy.html#a30420a3881779c822ab06c0405ea7b28">gridfire::policy::ReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1_temperature_dependent_chain_policy.html#add9c0230ad7c3e6e2cb182bdb4849c52">gridfire::policy::TemperatureDependentChainPolicy</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae7c930525db447e39b4de18fbc1251a8">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a4e572e823a80b905e7d002b612123135">gridfire::reaction::ReactionSet</a>, <a class="el" href="class_py_reaction_chain_policy.html#ad6671a30c99ad7a80edd60bd43a8a233">PyReactionChainPolicy</a></li>
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-<li>operator[]()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b">gridfire::engine::ReactionSet</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a4057f74ae647b691f4f61f150553c52b">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1utils_1_1_table.html#a405477a1b9ecf0f1dc84ec102cdec7b3">gridfire::utils::Table&lt; T &gt;</a>, <a class="el" href="classgridfire_1_1utils_1_1_table_base.html#a33d1f279cc02a4edb66e846bb7b10077">gridfire::utils::TableBase</a></li>
-<li>OrTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#aaf4f8a090bdd10eeba0b7849fa8ed888">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>OffDiagonalTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a6dc334b85ffb822880c6740dc457ea52">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></li>
+<li>operator!=()&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a5ec476b65fcedc5e4eb603a18037bf25">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a>, <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#aa36844fe4417617175d31124e541da50">gridfire::policy::MultiReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#ac19e354a8bcd28f60783b70d8a761030">gridfire::policy::ReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a264dc45c3410ab3ec49a340633aa5950">gridfire::policy::TemperatureDependentChainPolicy</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a8b6008e0f629329bfc62256f4f081b77">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a529189f464aebc6b5ac5c717f70e14b8">gridfire::reaction::ReactionSet</a>, <a class="el" href="classPyReactionChainPolicy.html#a8e3c5cdd4c1901bedf93168868a759a9">PyReactionChainPolicy</a></li>
+<li>operator()()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a6aef41de3c48ac77ae991ca427ce46a9">gridfire::engine::NetworkJacobian</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1TableAxes_01_4.html#abab92065d884b95cdddcc2f8f6fdd490">std::hash&lt; gridfire::rates::weak::TableAxes &gt;</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1Reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9">std::hash&lt; gridfire::reaction::Reaction &gt;</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1ReactionSet_01_4.html#a32b976b3e3e4e0403c1295f9b467e921">std::hash&lt; gridfire::reaction::ReactionSet &gt;</a></li>
+<li>operator&lt;()&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#ac9f99ea2754b419d030e92c314fba4ed">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></li>
+<li>operator=()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a338cd55e34af1286f0f4593b04be7508">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a>, <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#ac5372d721127646e75c0f177661566f9">gridfire::engine::NetworkJacobian</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#aac890bf7fdf689890d765ff67489520a">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#af500df838024c82724eaf7fe1cb9b8e8">gridfire::solver::CVODESolverStrategy</a></li>
+<li>operator==()&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a846d372046454aa0ff97a4c83d85b96d">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a>, <a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#abc3ed7c255b3e6c06e292aee8ef7f46d">gridfire::policy::MultiReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#a30420a3881779c822ab06c0405ea7b28">gridfire::policy::ReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#add9c0230ad7c3e6e2cb182bdb4849c52">gridfire::policy::TemperatureDependentChainPolicy</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae7c930525db447e39b4de18fbc1251a8">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a4e572e823a80b905e7d002b612123135">gridfire::reaction::ReactionSet</a>, <a class="el" href="classPyReactionChainPolicy.html#ad6671a30c99ad7a80edd60bd43a8a233">PyReactionChainPolicy</a></li>
+<li>operator&gt;()&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#adc1710fde415de7a337dbec664b16e45">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></li>
+<li>operator[]()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a4057f74ae647b691f4f61f150553c52b">gridfire::reaction::ReactionSet</a>, <a class="el" href="classgridfire_1_1utils_1_1Table.html#a405477a1b9ecf0f1dc84ec102cdec7b3">gridfire::utils::Table&lt; T &gt;</a>, <a class="el" href="classgridfire_1_1utils_1_1TableBase.html#a33d1f279cc02a4edb66e846bb7b10077">gridfire::utils::TableBase</a></li>
+<li>OrTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#aaf4f8a090bdd10eeba0b7849fa8ed888">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
   </ul>
 </div>
 </body>
diff --git a/docs/html/functions_func_p.html b/docs/html/functions_func_p.html
index ab923413..64a35616 100644
--- a/docs/html/functions_func_p.html
+++ b/docs/html/functions_func_p.html
@@ -3,18 +3,16 @@
 <head>
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 <meta http-equiv="X-UA-Compatible" content="IE=11"/>
-<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="generator" content="Doxygen 1.9.8"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
 <title>GridFire: Class Members - Functions</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
 <link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
 <script type="text/javascript" src="navtreedata.js"></script>
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@@ -102,30 +95,30 @@ $(function(){initNavTree('functions_func_r.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
 <h3><a id="index_r" name="index_r"></a>- r -</h3><ul>
-<li>rank()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html#af9544f4cec7b450027fe991614adabfa">gridfire::engine::NetworkJacobian</a></li>
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-<li>ReactionSet()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de">gridfire::engine::ReactionSet</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#a9a63306b92e23e3651c955ab614084de">gridfire::reaction::ReactionSet</a></li>
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+<li>rank()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#af9544f4cec7b450027fe991614adabfa">gridfire::engine::NetworkJacobian</a></li>
+<li>rateCoefficients()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#adfed51cf788a7ed4770cbd5945ddab2f">gridfire::reaction::ReaclibReaction</a></li>
+<li>RauscherThielemannPartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#ae67464baee3b12cdc0470be74524866c">gridfire::partition::RauscherThielemannPartitionFunction</a></li>
+<li>ReaclibReaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a264112a230817a6080c770686e5bcc01">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html#a264112a230817a6080c770686e5bcc01">gridfire::reaction::WeakReaclibReaction</a></li>
+<li>reactant_species()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aae06ff559026e3ce242a42cdd888c5a0">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ad85ca288289b25d482cbb8e3ff270028">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a82c14096308cdc9126ab6d9667febcd2">gridfire::reaction::Reaction</a></li>
+<li>reactants()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a1362d46630f30203027093e35883d1b1">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ad095aba46860fec0e68386bf04f7f142">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ac7b08c61cdc97268b9442afec4d08dad">gridfire::reaction::Reaction</a></li>
+<li>ReactionError()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html#a51a26442fb905643a6d871ab733f0ab5">gridfire::exceptions::ReactionError</a>, <a class="el" href="classgridfire_1_1exceptions_1_1ReactionParsingError.html#a51a26442fb905643a6d871ab733f0ab5">gridfire::exceptions::ReactionParsingError</a></li>
+<li>ReactionSet()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a9a63306b92e23e3651c955ab614084de">gridfire::reaction::ReactionSet</a></li>
+<li>rebuild()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a2444b9ed3bc61920ce23c546444269e4">gridfire::engine::DynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a6c5245a27da1b45e10fb410518b79d4e">gridfire::engine::GraphEngine</a>, <a class="el" href="classPyDynamicEngine.html#a25e52496b36d731127603c31e9dcaa97">PyDynamicEngine</a></li>
+<li>recordADTape()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a727ae752bcf5d6266a1cf3dedacf50fa">gridfire::engine::GraphEngine</a></li>
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+<li>rel_failure()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a4180dc6761c073acd82583a834ca09fd">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></li>
+<li>remove_reaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a1177193b1e46b4e5be630028883ab8dd">gridfire::reaction::ReactionSet</a></li>
+<li>rescueEdgeSpeciesDestructionChannel()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a85e70c0ff022c31702472aa39fc64816">gridfire::engine::AdaptiveEngineView</a></li>
+<li>reset()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a2436d8643911ade907e03fb29531ceaa">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#abf218d255bde157540b51cd6a54f6eb1">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#afe337517b77e5433d92ded3a64565141">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#ab42043e55c81bac5d3f981bc139579de">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a0bcab0247b3db618b76bd6769cf9a2ea">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a9b782cbf033ed2023da6b2d55dcefc4e">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#af4034fa431e6c88fd05c50cce31b2fa0">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a0fe6af73b11b820561bd4e5552890d4e">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#af652af761675736419b961b6946c728d">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
+<li>rev_sparse_jac()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#af5b5eff42682cf278fa4559e50c47eed">gridfire::engine::GraphEngine::AtomicReverseRate</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#ae9d61bdda761da89733408c232d7220e">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></li>
+<li>reverse()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#a23aed1727ab0cbba996561421e754018">gridfire::engine::GraphEngine::AtomicReverseRate</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#aad13654ea15547c2c95035c3b7937d58">gridfire::rates::weak::WeakReaction::AtomicWeakRate</a></li>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/functions_func_s.html b/docs/html/functions_func_s.html
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 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
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+<script type="text/javascript" src="resize.js"></script>
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@@ -29,7 +27,7 @@
  <tbody>
  <tr id="projectrow">
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-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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    <div id="projectbrief">General Purpose Nuclear Network</div>
   </td>
@@ -38,24 +36,19 @@
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-<!-- Generated by Doxygen 1.13.2 -->
+<!-- Generated by Doxygen 1.9.8 -->
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-<script type="text/javascript">
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@@ -102,43 +95,43 @@ $(function(){initNavTree('functions_func_s.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
 <h3><a id="index_s" name="index_s"></a>- s -</h3><ul>
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-<li>set()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html#a6fc63f3c5d3fe7a1fd8b0704f2e71e2c">gridfire::engine::NetworkJacobian</a></li>
-<li>set_absTol()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#aed8907852f77c15bb40d5a8e8f8af9b2">gridfire::solver::CVODESolverStrategy</a></li>
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-<li>set_detailed_step_logging()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a91966d110ca6225af60b633af5521cb4">gridfire::solver::CVODESolverStrategy</a></li>
-<li>set_relTol()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a6444290be523ad9fa91fa57c1dd4b6a2">gridfire::solver::CVODESolverStrategy</a></li>
-<li>set_stdout_logging_enabled()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a9857665a1198e24aac6add02afc6e306">gridfire::solver::CVODESolverStrategy</a></li>
-<li>setNetworkReactions()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_adaptive_engine_view.html#a5dbfcafa606c3242dc4ced62c2494a2d">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1_defined_engine_view.html#ae89529e13f2b7fd2febcfa5af40d4666">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1_dynamic_engine.html#ab321170954bffc53b1bedaf54f6976be">gridfire::engine::DynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#a90251650123d0d8ce0281e18c4476f45">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view.html#aa378d0e0fa6018b989d83945daa47952">gridfire::engine::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#af469cba3be850d53f659ec173f0eb4e4">PyDynamicEngine</a></li>
-<li>setPrecomputation()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#a0e0650a14247a7f43623d58de8eedb19">gridfire::engine::GraphEngine</a></li>
-<li>setScreeningModel()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_adaptive_engine_view.html#ab050409db954a3fa593633f9d2cd5d89">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1_defined_engine_view.html#a68bd0e51d3e127e5f9fd74fdb8180fd9">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1_dynamic_engine.html#a50e76977d0dc3cc23d52b51842d35003">gridfire::engine::DynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#af842981deaf84a698b6cbfa66abcb715">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view.html#ad11aa1e168ec03d0c3ed90eeddcefe52">gridfire::engine::MultiscalePartitioningEngineView</a>, <a class="el" href="class_py_dynamic_engine.html#afa3abfd612033336a656f092721c14ac">PyDynamicEngine</a></li>
+<li>selectPartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a32f397abf9e9ace9f0c721e4e14eb60b">gridfire::partition::CompositePartitionFunction</a></li>
+<li>set()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a6fc63f3c5d3fe7a1fd8b0704f2e71e2c">gridfire::engine::NetworkJacobian</a></li>
+<li>set_absTol()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#aed8907852f77c15bb40d5a8e8f8af9b2">gridfire::solver::CVODESolverStrategy</a></li>
+<li>set_callback()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a77638ef3d2279009e5a57bbd3f0eb63b">gridfire::solver::CVODESolverStrategy</a>, <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a4d97ee85933d5e5f90d4194bb021a1dc">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a>, <a class="el" href="classPyDynamicNetworkSolverStrategy.html#a112a7babc03858a69d6994a7155370d3">PyDynamicNetworkSolverStrategy</a></li>
+<li>set_detailed_step_logging()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a91966d110ca6225af60b633af5521cb4">gridfire::solver::CVODESolverStrategy</a></li>
+<li>set_relTol()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a6444290be523ad9fa91fa57c1dd4b6a2">gridfire::solver::CVODESolverStrategy</a></li>
+<li>set_stdout_logging_enabled()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a9857665a1198e24aac6add02afc6e306">gridfire::solver::CVODESolverStrategy</a></li>
+<li>setNetworkReactions()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a5dbfcafa606c3242dc4ced62c2494a2d">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#ae89529e13f2b7fd2febcfa5af40d4666">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#ab321170954bffc53b1bedaf54f6976be">gridfire::engine::DynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a90251650123d0d8ce0281e18c4476f45">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#aa378d0e0fa6018b989d83945daa47952">gridfire::engine::MultiscalePartitioningEngineView</a>, <a class="el" href="classPyDynamicEngine.html#af469cba3be850d53f659ec173f0eb4e4">PyDynamicEngine</a></li>
+<li>setPrecomputation()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a0e0650a14247a7f43623d58de8eedb19">gridfire::engine::GraphEngine</a></li>
+<li>setScreeningModel()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#ab050409db954a3fa593633f9d2cd5d89">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a68bd0e51d3e127e5f9fd74fdb8180fd9">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a50e76977d0dc3cc23d52b51842d35003">gridfire::engine::DynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#af842981deaf84a698b6cbfa66abcb715">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#ad11aa1e168ec03d0c3ed90eeddcefe52">gridfire::engine::MultiscalePartitioningEngineView</a>, <a class="el" href="classPyDynamicEngine.html#afa3abfd612033336a656f092721c14ac">PyDynamicEngine</a></li>
 <li>setup_policy()&#160;:&#160;<a class="el" href="structgridfire__mod_1_1gridfire.html#a2537a8b237e390fefea02ae2da46f851">gridfire_mod::gridfire</a></li>
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-<li>setUseReverseReactions()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#a959928abbef89fd0a20264ef8b79c111">gridfire::engine::GraphEngine</a></li>
-<li>shape()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html#a699933e9f807ec196157f92ffb46b9ba">gridfire::engine::NetworkJacobian</a></li>
-<li>SimpleReactionListFileParser()&#160;:&#160;<a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993">gridfire::io::SimpleReactionListFileParser</a></li>
-<li>SimulationTimeTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#a235f84a37370a1ca2226fb881b4051c7">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></li>
-<li>singular()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html#a485321469d84b3cf923ec79957044406">gridfire::engine::NetworkJacobian</a></li>
-<li>size()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf">gridfire::engine::ReactionSet</a>, <a class="el" href="classgridfire_1_1policy_1_1_multi_reaction_chain_policy.html#a84fcdc2adab96284d850f8dd43315278">gridfire::policy::MultiReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a4c58951d9f7ab252717c226b0da80a9d">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html#af14cf34d7367cb6a6be5191724c2d4cf">gridfire::reaction::ReactionSet</a></li>
-<li>solve()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_solver.html#aa6f28cf2f5759efad7d428f6794cc151">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></li>
-<li>solveQSEAbundances()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view.html#a6c785a6334e5fd9593d3e279bafee592">gridfire::engine::MultiscalePartitioningEngineView</a></li>
-<li>solves()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_solver.html#a420ca8991dd60fac7a9d18fae0eda0c1">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></li>
-<li>sourceLabel()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a96d4ab87de02e9b0be3c248e2e955b4b">gridfire::reaction::ReaclibReaction</a></li>
-<li>sources()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#ad4979f437dc787a5475c3a029804ed99">gridfire::reaction::LogicalReaclibReaction</a></li>
-<li>step()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1_and_trigger.html#a8e743e8ebe71f9ded835177db6fad908">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#a26d0aca39087a1f69e96e0701ca83f81">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_not_trigger.html#a5096cb7e70ea357f28e1b9fc8301c793">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html#a95a801aafb5aaa9a22566ebf722a1150">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#aaef2090ed67a7c27967821f75a61e524">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a8b882c6ba6e267d7051031140bbb7ad6">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#aafc7f40bde2c78f4d100b6f9da771831">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a9723e389aeba05fdb3d4fd1dcc1ba07d">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1_trigger.html#a4b7ffa4d8d31e2118a8e86172be51041">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
-<li>StepDerivatives()&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1_step_derivatives.html#ab6f82eeaf31cdb66fb40267838b19a34">gridfire::engine::StepDerivatives&lt; T &gt;</a></li>
-<li>stoichiometry()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_reaction.html#a55b7f61d9bde45f2ca485c1b07a05950">gridfire::engine::Reaction</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a8bf7dc26d9f1375625df99bceba08a44">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaclib_reaction.html#a57b2695d152360a6ba08776cc760e3a1">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ad49f4cad024db72c966d949c75f1ce4d">gridfire::reaction::Reaction</a></li>
-<li>supports()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="class_py_partition_function.html#a0f288a01a3ed7fb92fff5d9fd7d56aa8">PyPartitionFunction</a></li>
-<li>syncInternalMaps()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html#a9af928bf8a5327d3cb45254c0e59f914">gridfire::engine::GraphEngine</a></li>
-<li>sys_func()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_solver.html#a58b7b2ac01c40084cc839309267e400e">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></li>
-<li>sys_jac()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_solver.html#a9a34e36baa074c1b39b230e0b5010a82">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></li>
+<li>setUseReverseReactions()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a959928abbef89fd0a20264ef8b79c111">gridfire::engine::GraphEngine</a></li>
+<li>shape()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a699933e9f807ec196157f92ffb46b9ba">gridfire::engine::NetworkJacobian</a></li>
+<li>SimpleReactionListFileParser()&#160;:&#160;<a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#afc8ed91e8c98205c505e3d9f0cff1993">gridfire::io::SimpleReactionListFileParser</a></li>
+<li>SimulationTimeTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a235f84a37370a1ca2226fb881b4051c7">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></li>
+<li>singular()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a485321469d84b3cf923ec79957044406">gridfire::engine::NetworkJacobian</a></li>
+<li>size()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#a84fcdc2adab96284d850f8dd43315278">gridfire::policy::MultiReactionChainPolicy</a>, <a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a4c58951d9f7ab252717c226b0da80a9d">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#af14cf34d7367cb6a6be5191724c2d4cf">gridfire::reaction::ReactionSet</a></li>
+<li>solve()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#aa6f28cf2f5759efad7d428f6794cc151">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></li>
+<li>solveQSEAbundances()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a6c785a6334e5fd9593d3e279bafee592">gridfire::engine::MultiscalePartitioningEngineView</a></li>
+<li>solves()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a420ca8991dd60fac7a9d18fae0eda0c1">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></li>
+<li>sourceLabel()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a96d4ab87de02e9b0be3c248e2e955b4b">gridfire::reaction::ReaclibReaction</a></li>
+<li>sources()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#ad4979f437dc787a5475c3a029804ed99">gridfire::reaction::LogicalReaclibReaction</a></li>
+<li>step()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a8e743e8ebe71f9ded835177db6fad908">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a26d0aca39087a1f69e96e0701ca83f81">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a5096cb7e70ea357f28e1b9fc8301c793">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a95a801aafb5aaa9a22566ebf722a1150">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#aaef2090ed67a7c27967821f75a61e524">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a8b882c6ba6e267d7051031140bbb7ad6">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#aafc7f40bde2c78f4d100b6f9da771831">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a9723e389aeba05fdb3d4fd1dcc1ba07d">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a4b7ffa4d8d31e2118a8e86172be51041">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
+<li>StepDerivatives()&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html#ab6f82eeaf31cdb66fb40267838b19a34">gridfire::engine::StepDerivatives&lt; T &gt;</a></li>
+<li>stoichiometry()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a1f4acfdb39bb861aaee9f3f28cfc406e">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a0f629cbfe95dc5643b5e3724be0db2f9">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab7888b57507d6d27de6e5fcaea40fff5">gridfire::reaction::Reaction</a></li>
+<li>supports()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#ae8908a78f087ea516cdd5a4cdd449a9c">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#a49b18aae58eb6250aaa23d43d55f02bd">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a6df4191d10516477371a0384e1e55bf5">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a588a11c654751765b04d6425c99041f5">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="classPyPartitionFunction.html#a0f288a01a3ed7fb92fff5d9fd7d56aa8">PyPartitionFunction</a></li>
+<li>syncInternalMaps()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a9af928bf8a5327d3cb45254c0e59f914">gridfire::engine::GraphEngine</a></li>
+<li>sys_func()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a58b7b2ac01c40084cc839309267e400e">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></li>
+<li>sys_jac()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a9a34e36baa074c1b39b230e0b5010a82">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></li>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
   </ul>
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 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
 <link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
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-<script type="text/javascript" src="resize.js"></script>
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 <script type="text/javascript" src="search/search.js"></script>
@@ -29,7 +27,7 @@
  <tbody>
  <tr id="projectrow">
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-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
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@@ -38,24 +36,19 @@
 </table>
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-<!-- Generated by Doxygen 1.13.2 -->
+<!-- Generated by Doxygen 1.9.8 -->
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+  $(document).ready(function() { init_search(); });
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 </div>
 <script type="text/javascript">
 /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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+$(document).ready(function(){initNavTree('functions_func_t.html',''); initResizable(); });
 /* @license-end */
 </script>
 <div id="doc-content">
@@ -102,22 +95,22 @@ $(function(){initNavTree('functions_func_t.html',''); initResizable(true); });
 <div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
 
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+<li>Table()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1Table.html#af1003bb9d31eb82a13f63e3e2cdad987">gridfire::utils::Table&lt; T &gt;</a></li>
+<li>TemperatureDependentChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a07f5a057d382874ec641b3494338dc65">gridfire::policy::TemperatureDependentChainPolicy</a></li>
+<li>TimestepCollapseTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a171e6dee7f7d8275b3e8875eaeb0850d">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></li>
+<li>TimestepContext()&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a04c4ce00c6a0a62ba6d1e6fb1a0a53be">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
+<li>to_csv()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a8267f02eacb52d238da6daa19dbea764">gridfire::engine::NetworkJacobian</a></li>
+<li>toCSV()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1Table.html#a75503b09c879108faf597a5c93723e4a">gridfire::utils::Table&lt; T &gt;</a>, <a class="el" href="classgridfire_1_1utils_1_1TableBase.html#acd7d5ca97586c58a6b54d54370111597">gridfire::utils::TableBase</a></li>
+<li>toString()&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#aa56ff69de9025ce559202c06f95f8b6b">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></li>
+<li>TripleAlphaChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html#a857760f885820ad7cb0cee2d8512d36d">gridfire::policy::TripleAlphaChainPolicy</a></li>
+<li>type()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#a66560e21a4a7b08e8da135ce8279ed88">gridfire::partition::CompositePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#af8d0146fc2afedf3785ae9ec932d3250">gridfire::partition::GroundStatePartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#ab0c67985a972707eac0ebc64417dfb97">gridfire::partition::PartitionFunction</a>, <a class="el" href="classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html#a3aa478acf12e09b6dd268f744071b2a0">gridfire::partition::RauscherThielemannPartitionFunction</a>, <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#aade329265a26bdc005c0793ba7a36ab2">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#acbfa2d4e23dff6641be21cc1e754be15">gridfire::reaction::LogicalReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a3c0fbdd07f9a837bd031c5bdc58e0e8f">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a7f2590eee9f0dfb7b73cd92170a844b7">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html#af191b4afdf41a9916ecf9647e88d8037">gridfire::reaction::WeakReaclibReaction</a>, <a class="el" href="classPyPartitionFunction.html#a07f4d0ff83822dd2800897161d2a3717">PyPartitionFunction</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
   </ul>
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diff --git a/docs/html/functions_func_u.html b/docs/html/functions_func_u.html
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--- a/docs/html/functions_func_u.html
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 <head>
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+<meta name="generator" content="Doxygen 1.9.8"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
 <title>GridFire: Class Members - Functions</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
 <link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
 <script type="text/javascript" src="navtreedata.js"></script>
 <script type="text/javascript" src="navtree.js"></script>
-<script type="text/javascript" src="resize.js"></script>
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 <script type="text/javascript" src="search/search.js"></script>
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  <tbody>
  <tr id="projectrow">
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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    <div id="projectbrief">General Purpose Nuclear Network</div>
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 </table>
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 <!-- end header part -->
-<!-- Generated by Doxygen 1.13.2 -->
+<!-- Generated by Doxygen 1.9.8 -->
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 <div id="doc-content">
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+<li>update()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a8db6ba52f454c136ee0a1335436fab6e">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a1d99b55bf8e94bc2397715aa1f916733">gridfire::engine::DefinedEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a8dd85442ec54f20d91743c72364e36ff">gridfire::engine::DynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a7f6d98a9a4f22f1bbc015b1cbb8198e3">gridfire::engine::GraphEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a28c8ac1ec594cf55a297e3f9586e214a">gridfire::engine::MultiscalePartitioningEngineView</a>, <a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a62f7dbbcf0554caa68e3d778580b3c1d">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a0dd783afab7ef6005f0241f9de7b31f6">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a846432abf33c7602af0fbb5475c0ad32">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a775dac97d109c5fcd5c0287ca98f308c">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#ae47bbdf6edae798f30866c1ac4104cc1">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a179cb09a91d5c638d7a347137b208767">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a468bf58f66417493501c59d7a8aabc98">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#af6bff6a484e8729445c26620b489665d">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a048899795704f68668960454d118a6fc">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classPyDynamicEngine.html#af8e6a8cd44f278535d7bcc9a896d6da8">PyDynamicEngine</a></li>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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-<script type="text/javascript" src="clipboard.js"></script>
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+<script type="text/javascript" src="resize.js"></script>
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 </table>
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-  $(function() { init_search(); });
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+  $(document).ready(function() { init_search(); });
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 <div id="doc-content">
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+<li>validateConservation()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a87bf3a33fc21f7da2a26173ebdfa69f7">gridfire::engine::GraphEngine</a></li>
+<li>validateGroupsWithFluxAnalysis()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#acf5cfbd18ebb2566f637cb176f861423">gridfire::engine::MultiscalePartitioningEngineView</a></li>
+<li>validateNetworkState()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1DefinedEngineView.html#a91ea88e43c17f99ff0d95a8f54b09cbf">gridfire::engine::DefinedEngineView</a></li>
+<li>validateState()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a63837a6a4343a2ac6a61e21576b62655">gridfire::engine::AdaptiveEngineView</a></li>
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 </div><!-- contents -->
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 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/functions_func_w.html b/docs/html/functions_func_w.html
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 <meta name="viewport" content="width=device-width, initial-scale=1"/>
 <title>GridFire: Class Members - Functions</title>
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 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
 <link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
 <script type="text/javascript" src="navtreedata.js"></script>
 <script type="text/javascript" src="navtree.js"></script>
-<script type="text/javascript" src="resize.js"></script>
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 <script type="text/javascript" src="search/searchdata.js"></script>
 <script type="text/javascript" src="search/search.js"></script>
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  <tbody>
  <tr id="projectrow">
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-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
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 </table>
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-<!-- Generated by Doxygen 1.13.2 -->
+<!-- Generated by Doxygen 1.9.8 -->
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+$(document).ready(function(){initNavTree('functions_func_w.html',''); initResizable(); });
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+<li>what()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html#a6986522d45e8d94da310d1b37373414c">gridfire::exceptions::GridFireError</a>, <a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html#a7bc47cdb02c2f8a803306cb9bb75b1af">gridfire::exceptions::ReactionError</a></li>
+<li>why()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a01033721e8f5d90483d65c904399cf96">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#a3bf0d69122f801deca4b62db47262d9b">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#abfb3eb7befba646ce9f11f36a63750ae">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#a7bca0da16353f4b04a2f40fb29c07922">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#aedd397b71cd5b1ad26a0b21a34cf5631">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a3af973e466ba62ebf1e41c608355e327">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#a9dfab0b765d3a4c362cecd860d59f58a">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a22d8bc7aacbc388108225c26158e918c">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a>, <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a9f020d828ca36a601b780566cc3377ea">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
 </ul>
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 </div><!-- doc-content -->
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 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
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-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+<li>~AndTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html#a2ee18348ca65cc1aa56eb41292a39bc5">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>~ColumnBase()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html#a704c1fc03271c14fc9f3da43612a1589">gridfire::utils::ColumnBase</a></li>
+<li>~CVODESolverStrategy()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#aca2d01a907c3bb828f9f99ad05506578">gridfire::solver::CVODESolverStrategy</a></li>
+<li>~Engine()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1Engine.html#af0ea99416c28933d364a872fc6aff556">gridfire::engine::Engine</a></li>
+<li>~EngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1EngineView.html#a17d63e853d6efca31064e9147c80d497">gridfire::engine::EngineView&lt; EngineT &gt;</a></li>
+<li>~EveryNthTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#ae28e54330d575d9d1d3d8ebc6e7a6f75">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>~MultiscalePartitioningEngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#ae553a4d590c0cfae5591bcd8bbe6f9d3">gridfire::engine::MultiscalePartitioningEngineView</a></li>
+<li>~NetworkFileParser()&#160;:&#160;<a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html#a9b4095d06fad5df3805c92ae97b3eab3">gridfire::io::NetworkFileParser</a></li>
+<li>~NetworkPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html#a0d32c22a2d3794c328e8dd24d2cda2be">gridfire::policy::NetworkPolicy</a></li>
+<li>~NetworkSolverStrategy()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a1693dc93f63599c89587d729aca8e318">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></li>
+<li>~NotTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#afa4173490171d1251cc1757b92841755">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>~OrTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#afe30f95de39c1375557d032b8a8111f9">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>~PartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a197a0663dcfb4ab4be3b0e14b98391db">gridfire::partition::PartitionFunction</a></li>
+<li>~QSESolver()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a308ee7b77cde2658ea0c1e43827cea49">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></li>
+<li>~ReaclibReaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae2b9b41a598c5f0dcd050b32985ea44e">gridfire::reaction::ReaclibReaction</a></li>
+<li>~Reaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab1860df84843be70f97469761e11ab6a">gridfire::reaction::Reaction</a></li>
+<li>~ReactionChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">gridfire::policy::ReactionChainPolicy</a></li>
+<li>~ScreeningModel()&#160;:&#160;<a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#adef175acdbd911527f56a1f1592579a7">gridfire::screening::ScreeningModel</a></li>
+<li>~SolverContextBase()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1SolverContextBase.html#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8">gridfire::solver::SolverContextBase</a></li>
+<li>~SolverPluginInterface()&#160;:&#160;<a class="el" href="classSolverPluginInterface.html#a5611d046cd2fd4d4200785725854e39b">SolverPluginInterface</a></li>
+<li>~TableBase()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1TableBase.html#a0529d4130643358562e1c1d1f78c924f">gridfire::utils::TableBase</a></li>
+<li>~TemperatureDependentChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a74b59b1cb02703834373fb7a3d09614e">gridfire::policy::TemperatureDependentChainPolicy</a></li>
+<li>~Trigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
+<li>~WeakReactionMap()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html#a73cc5a9d4a236091bbb40f22ed66b2f1">gridfire::rates::weak::WeakReactionMap</a></li>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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 <meta http-equiv="X-UA-Compatible" content="IE=11"/>
-<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="generator" content="Doxygen 1.9.8"/>
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 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
 <link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
 <script type="text/javascript" src="navtreedata.js"></script>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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@@ -38,24 +36,19 @@
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-<!-- Generated by Doxygen 1.13.2 -->
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+<li>GroundStatePartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#a8afa2aee993eb3ed8d01c887d39b57eb">gridfire::partition::GroundStatePartitionFunction</a></li>
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+<li>nans()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a9292384722bcb0245acab9affcdb8c6d">gridfire::engine::NetworkJacobian</a></li>
+<li>ncols()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1Table.html#afd3ddec237e460916d2245b3f52c68ad">gridfire::utils::Table&lt; T &gt;</a>, <a class="el" href="classgridfire_1_1utils_1_1TableBase.html#af1a64a10395240ae527c33de5555e91b">gridfire::utils::TableBase</a></li>
+<li>NetworkJacobian()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#aee558bd90f26fdb6172a04fb63d2572e">gridfire::engine::NetworkJacobian</a></li>
+<li>NetworkPrimingEngineView()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#a0d505b967dc3b50f6966a0110e53a6d7">gridfire::engine::NetworkPrimingEngineView</a></li>
+<li>NetworkSolverStrategy()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html#a01cbbec0eb5c3a60f50da38cdaf66505">gridfire::solver::NetworkSolverStrategy&lt; EngineT &gt;</a></li>
+<li>networkSpecies&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a41a5bc46358cb59373f62c791e1bc29c">gridfire::solver::CVODESolverStrategy::CVODEUserData</a>, <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a75d7e32c9df3d8a047069fe2d64cd089">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
+<li>neutrino_energy_loss_rate&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODERHSOutputData.html#a449c2a51ffbe6a14f1916afd8a2a20fb">gridfire::solver::CVODESolverStrategy::CVODERHSOutputData</a>, <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a309e36605c79136e96f91f89dcde06d6">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></li>
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+<li>neutronMassG&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#a2d6c6d4eb9b54c050c266298611c1e44">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>neutronMassMeV&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#a0629ea0e5d51166e400696a358b0045e">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>nnz()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html#a2016fcfe27363650817b5be1ce6aaa32">gridfire::engine::NetworkJacobian</a></li>
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+<li>NotTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#a4828599aae5ff37f4c82e51fe192bed3">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>nrows()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1Table.html#adc88ced7876f48aada9bc3cf73163567">gridfire::utils::Table&lt; T &gt;</a>, <a class="el" href="classgridfire_1_1utils_1_1TableBase.html#a271f10ae6349dc5a6e37f27f1d580752">gridfire::utils::TableBase</a></li>
+<li>nuclearEnergyGenerationRate&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html#ab00be76673548db59c4097f19dc8be93">gridfire::engine::StepDerivatives&lt; T &gt;</a></li>
+<li>num_species()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a1210917ca1727ea474bb606cf8279edb">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#a9205126955ad38f56e8aca3112bc150a">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ae2a1b0395ac127c792a8049cd0bcc249">gridfire::reaction::Reaction</a>, <a class="el" href="structgridfire__mod_1_1gridfire.html#ad4e967702e2d02d33589d23ecf0234d4">gridfire_mod::gridfire</a></li>
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+<li>qse_solve_species_index_map&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver_1_1UserData.html#a1aca1d483f9a0ef647238b79db860f23">gridfire::engine::MultiscalePartitioningEngineView::QSESolver::UserData</a></li>
+<li>QSEPartition&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a892741542388166db4dc55631567ee0a">gridfire::engine::MultiscalePartitioningEngineView</a></li>
+<li>QSESolver()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html#a953520d6b705533fbdea699a50e31d54">gridfire::engine::MultiscalePartitioningEngineView::QSESolver</a></li>
+<li>queryValue&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1BoundsErrorInfo.html#a3eb0be2063f7333994a026a569ae5568">gridfire::rates::weak::BoundsErrorInfo</a></li>
+<li>qValue()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#afedb724bf9f1c8fc91d853f2bedb10cb">gridfire::rates::weak::WeakReaction</a>, <a class="el" href="structgridfire_1_1reaclib_1_1ReactionRecord.html#aeeb8a1e078a27420e398663825cce644">gridfire::reaclib::ReactionRecord</a>, <a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae47931948f12816eb890c0db4fff4d68">gridfire::reaction::ReaclibReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#a7e06936f9e8bb74e68eaa10e708e5d3c">gridfire::reaction::Reaction</a></li>
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 <div class="textblock">Here is a list of all class members with links to the classes they belong to:</div>
 
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+<li>reactionContributions&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html#ac269799f25d23045bf60dd27376d4337">gridfire::engine::StepDerivatives&lt; T &gt;</a></li>
+<li>ReactionError()&#160;:&#160;<a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html#a51a26442fb905643a6d871ab733f0ab5">gridfire::exceptions::ReactionError</a>, <a class="el" href="classgridfire_1_1exceptions_1_1ReactionParsingError.html#a51a26442fb905643a6d871ab733f0ab5">gridfire::exceptions::ReactionParsingError</a></li>
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+<li>ReactionSet()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html#a9a63306b92e23e3651c955ab614084de">gridfire::reaction::ReactionSet</a></li>
+<li>rebuild()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html#a2444b9ed3bc61920ce23c546444269e4">gridfire::engine::DynamicEngine</a>, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a6c5245a27da1b45e10fb410518b79d4e">gridfire::engine::GraphEngine</a>, <a class="el" href="classPyDynamicEngine.html#a25e52496b36d731127603c31e9dcaa97">PyDynamicEngine</a></li>
+<li>recordADTape()&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html#a727ae752bcf5d6266a1cf3dedacf50fa">gridfire::engine::GraphEngine</a></li>
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+<li>tMax&#160;:&#160;<a class="el" href="structgridfire_1_1NetIn.html#a0a8d820cfeaa92ee31f253795c57e0d1">gridfire::NetIn</a></li>
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+<li>total_neutrino_flux&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODERHSOutputData.html#ab36ca1b318b47e72c05f1e162f005e1b">gridfire::solver::CVODESolverStrategy::CVODERHSOutputData</a>, <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a7a495c5df9e1da7f2e7182511f6a95c8">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></li>
+<li>totalNeutrinoFlux&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html#a97a3fe3cf9178044bcb57e371063a820">gridfire::engine::StepDerivatives&lt; T &gt;</a></li>
+<li>TripleAlphaChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html#a857760f885820ad7cb0cee2d8512d36d">gridfire::policy::TripleAlphaChainPolicy</a></li>
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  <tbody>
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+$(document).ready(function(){initNavTree('functions_type.html',''); initResizable(); });
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@@ -100,20 +93,20 @@ $(function(){initNavTree('functions_type.html',''); initResizable(true); });
 
 <div class="contents">
 <div class="textblock">Here is a list of all typedefs with links to the classes they belong to:</div><ul>
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+<li>ADDouble&#160;:&#160;<a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html#a51119d705267e0b415aae8b4881d8c96">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#a107ff2897f040d6f27f69d56a0bdd28d">gridfire::screening::ScreeningModel</a></li>
+<li>Config&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a0a49d174e105adb3ffd9cf98ff58db3e">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html#a8d066e95f4cc201cbda90c2aec5d98c4">gridfire::engine::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html#af43ad8375abf1cedfdccc296b9958c2b">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#ad913155a5a2a36b29e4ce4ca8d71c036">gridfire::io::SimpleReactionListFileParser</a></li>
+<li>LogManager&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#ae8810c067d301b2f620869b0a5c8d5ce">gridfire::engine::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html#af2183aba50db8f91055042425fb84766">gridfire::engine::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html#a84aa6894a331ad57bdab1e1ab85d4055">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html#a6f8f9a1f54cd2be5ec66c3181be892de">gridfire::io::SimpleReactionListFileParser</a></li>
+<li>QSEPartition&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html#a892741542388166db4dc55631567ee0a">gridfire::engine::MultiscalePartitioningEngineView</a></li>
+<li>RescueSet&#160;:&#160;<a class="el" href="classgridfire_1_1engine_1_1AdaptiveEngineView.html#a21367fa61169e6f5185bc91b40cc04be">gridfire::engine::AdaptiveEngineView</a></li>
+<li>RowDataTable&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#afd3e0e1c5edaf12609b5fc81c379e3e5">gridfire::rates::weak::WeakRateInterpolator</a></li>
+<li>TimestepCallback&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html#a89c537c2f34ba3e202374304b7e5990a">gridfire::solver::CVODESolverStrategy</a></li>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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@@ -102,27 +95,27 @@ $(function(){initNavTree('functions_vars_d.html',''); initResizable(true); });
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+<li>d_log_antineutrino_loss_bd&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives.html#a5f6e7e1c799fbdc9822397a86454cf3f">gridfire::rates::weak::WeakRateDerivatives</a></li>
+<li>d_log_beta_minus&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives.html#a4d631203f78251f58ccfe5292c12cd56">gridfire::rates::weak::WeakRateDerivatives</a></li>
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+<li>d_log_electron_capture&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives.html#a38a088b882131fa00bab789eeaca3dc3">gridfire::rates::weak::WeakRateDerivatives</a></li>
+<li>d_log_neutrino_loss_ec&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives.html#a8a3167159eeaffbf3052528f5067cbac">gridfire::rates::weak::WeakRateDerivatives</a></li>
+<li>d_log_positron_capture&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives.html#a66e72144cc2398e0ff5f8b43ad9d15e8">gridfire::rates::weak::WeakRateDerivatives</a></li>
+<li>data&#160;:&#160;<a class="el" href="structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1IdentifiedIsotope.html#a9b8fc949cc2cb1729c719cf20463e070">gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html#ad0df5ef84e3a78d881838a3bb014db83">gridfire::rates::weak::IsotopeGrid</a></li>
+<li>density&#160;:&#160;<a class="el" href="structgridfire_1_1NetIn.html#a06f0dff9f8927b7cf2da3004c8fa1577">gridfire::NetIn</a></li>
+<li>dEps_dRho&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html#a3017720ca1eb0a7567d6a1e30c8bfc5e">gridfire::engine::EnergyDerivatives</a>, <a class="el" href="structgridfire_1_1NetOut.html#ad0bde670fb87bcab4de413e8284d624e">gridfire::NetOut</a></li>
+<li>dEps_dT&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html#a121c9ec02cae31730f81cec9a8774e6e">gridfire::engine::EnergyDerivatives</a>, <a class="el" href="structgridfire_1_1NetOut.html#a210c0c395bc012c8ce6bef8cc6b683d6">gridfire::NetOut</a></li>
+<li>description&#160;:&#160;<a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html#aaf99ffdeb73f5e792e61c4cca68aa157">gridfire::trigger::TriggerResult</a></li>
+<li>dt&#160;:&#160;<a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a6442d15673e6385bb6fdd11e1179c487">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
+<li>dt0&#160;:&#160;<a class="el" href="structgridfire_1_1NetIn.html#a4e556f7bb18f46654b3445476734076a">gridfire::NetIn</a></li>
+<li>dydt&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html#aad90bec88a31fce600c60c29835410b1">gridfire::engine::StepDerivatives&lt; T &gt;</a></li>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
   </ul>
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diff --git a/docs/html/functions_vars_e.html b/docs/html/functions_vars_e.html
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 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
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+<script type="text/javascript" src="resize.js"></script>
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 </script>
 <div id="doc-content">
@@ -102,18 +95,18 @@ $(function(){initNavTree('functions_vars_e.html',''); initResizable(true); });
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-<li>energy&#160;:&#160;<a class="el" href="structgridfire_1_1_net_in.html#ae1fbce804bafa6ad2be4ac3470dac93b">gridfire::NetIn</a>, <a class="el" href="structgridfire_1_1_net_out.html#a43d5a861708992c949f616aa2a035ec6">gridfire::NetOut</a>, <a class="el" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#a1fb4ca773aaad8d1d958a3a0e82d8edd">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></li>
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+<li>electronMassG&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#a8998f5acb979463eeabb14da50fb6856">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>electronMassMeV&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#a24d6517e15c177fb8ca72f08f8eaf509">gridfire::rates::weak::WeakReaction::constants</a></li>
+<li>energy&#160;:&#160;<a class="el" href="structgridfire_1_1NetIn.html#ae1fbce804bafa6ad2be4ac3470dac93b">gridfire::NetIn</a>, <a class="el" href="structgridfire_1_1NetOut.html#a43d5a861708992c949f616aa2a035ec6">gridfire::NetOut</a>, <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a1fb4ca773aaad8d1d958a3a0e82d8edd">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></li>
+<li>engine&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver_1_1UserData.html#a15347dc13bbe872c5d2ed222426750f4">gridfire::engine::MultiscalePartitioningEngineView::QSESolver::UserData</a>, <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a657f34d754521a6991351e29e0942ed6">gridfire::solver::CVODESolverStrategy::CVODEUserData</a>, <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a5a457651dcb9d4a66ed219ddf7095313">gridfire::solver::CVODESolverStrategy::TimestepContext</a>, <a class="el" href="structGridFireContext.html#ad3e84807850731ccdafe782aa5a81622">GridFireContext</a></li>
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-<script type="text/javascript" src="clipboard.js"></script>
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+<script type="text/javascript" src="resize.js"></script>
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+<li>policy&#160;:&#160;<a class="el" href="structGridFireContext.html#af2c2beed9c6710d8e2fb39fc8ac0eb60">GridFireContext</a></li>
+<li>primedComposition&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html#a73acbf3cbec59f5516e4c7aa3f6ca150">gridfire::engine::PrimingReport</a></li>
+<li>product_powers&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1GraphEngine_1_1PrecomputedReaction.html#ae0dce375a45959da6c75fec3ede46fea">gridfire::engine::GraphEngine::PrecomputedReaction</a></li>
+<li>products_str&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1ReactionRecord.html#af1b1d3b0308d965ef0697b247fcf9082">gridfire::reaclib::ReactionRecord</a></li>
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+<li>protonMassMeV&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#a8a780d3937e60794f007ec65fe866a56">gridfire::rates::weak::WeakReaction::constants</a></li>
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-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
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+<li>qse_solve_species&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver_1_1UserData.html#aac144e8d23e08c3578b3e36ade594f70">gridfire::engine::MultiscalePartitioningEngineView::QSESolver::UserData</a></li>
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 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
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-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+<li>reaction_hash&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1GraphEngine_1_1PrecomputedReaction.html#a2a63022b616788e377c804fcf1ccf847">gridfire::engine::GraphEngine::PrecomputedReaction</a></li>
+<li>reaction_index&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1GraphEngine_1_1PrecomputedReaction.html#ac6acad530a508ccb16ae103191490083">gridfire::engine::GraphEngine::PrecomputedReaction</a></li>
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+<li>reactionContributions&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html#ac269799f25d23045bf60dd27376d4337">gridfire::engine::StepDerivatives&lt; T &gt;</a></li>
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+<li>reverse&#160;:&#160;<a class="el" href="structgridfire_1_1reaclib_1_1ReactionRecord.html#aa1fd4f510d7c00d2e4197e9b9caf29fd">gridfire::reaclib::ReactionRecord</a></li>
+<li>reverse_symmetry_factor&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1GraphEngine_1_1PrecomputedReaction.html#ae70bcf64f86170160d837abd5bdce873">gridfire::engine::GraphEngine::PrecomputedReaction</a></li>
+<li>rho&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver_1_1UserData.html#a7ff42828a485eabd21811a9775eb4d3c">gridfire::engine::MultiscalePartitioningEngineView::QSESolver::UserData</a>, <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#afdc510f8160693806737c4ab517058b8">gridfire::solver::CVODESolverStrategy::CVODEUserData</a>, <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a4a25afbc9f8a907304992e144dfa3529">gridfire::solver::CVODESolverStrategy::TimestepContext</a></li>
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-<script type="text/javascript" src="clipboard.js"></script>
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  <tbody>
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 <div class="textblock">Here is a list of all variables with links to the classes they belong to:</div>
 
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+<li>seed_species&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a9434050b990ecfa0459feebff3047ee2">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></li>
+<li>solver&#160;:&#160;<a class="el" href="structGridFireContext.html#a958e9c99e8759bf8388df5689fd45baa">GridFireContext</a></li>
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+<li>speciesList&#160;:&#160;<a class="el" href="structGridFireContext.html#af6c7cfb326dd3540ce615ecb67935959">GridFireContext</a></li>
+<li>specific_neutrino_energy_loss&#160;:&#160;<a class="el" href="structgridfire_1_1NetOut.html#a801b7bf34375fc56cc6e6cdaef77b070">gridfire::NetOut</a></li>
+<li>specific_neutrino_flux&#160;:&#160;<a class="el" href="structgridfire_1_1NetOut.html#a84a4f64f5a6b7ff965c36b4f7f8aa8f6">gridfire::NetOut</a></li>
+<li>speedOfLight&#160;:&#160;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#a016c3e02f622e21073f9110707177b76">gridfire::rates::weak::WeakReaction::constants</a></li>
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+<li>status&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html#ac3e0c141e56c7bc41dd89d5fc873fa41">gridfire::engine::PrimingReport</a></li>
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+<li>success&#160;:&#160;<a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html#a68aa5f346f5d9d598bf921e175c49239">gridfire::engine::PrimingReport</a></li>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
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+<script type="text/javascript" src="resize.js"></script>
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+<li>~NotTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html#afa4173490171d1251cc1757b92841755">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>~OrTrigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html#afe30f95de39c1375557d032b8a8111f9">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></li>
+<li>~PartitionFunction()&#160;:&#160;<a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html#a197a0663dcfb4ab4be3b0e14b98391db">gridfire::partition::PartitionFunction</a></li>
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+<li>~ReaclibReaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html#ae2b9b41a598c5f0dcd050b32985ea44e">gridfire::reaction::ReaclibReaction</a></li>
+<li>~Reaction()&#160;:&#160;<a class="el" href="classgridfire_1_1reaction_1_1Reaction.html#ab1860df84843be70f97469761e11ab6a">gridfire::reaction::Reaction</a></li>
+<li>~ReactionChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#aa3e6c1e4844fe788aeb08d272070ae13">gridfire::policy::ReactionChainPolicy</a></li>
+<li>~ScreeningModel()&#160;:&#160;<a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html#adef175acdbd911527f56a1f1592579a7">gridfire::screening::ScreeningModel</a></li>
+<li>~SolverContextBase()&#160;:&#160;<a class="el" href="classgridfire_1_1solver_1_1SolverContextBase.html#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8">gridfire::solver::SolverContextBase</a></li>
+<li>~SolverPluginInterface()&#160;:&#160;<a class="el" href="classSolverPluginInterface.html#a5611d046cd2fd4d4200785725854e39b">SolverPluginInterface</a></li>
+<li>~TableBase()&#160;:&#160;<a class="el" href="classgridfire_1_1utils_1_1TableBase.html#a0529d4130643358562e1c1d1f78c924f">gridfire::utils::TableBase</a></li>
+<li>~TemperatureDependentChainPolicy()&#160;:&#160;<a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#a74b59b1cb02703834373fb7a3d09614e">gridfire::policy::TemperatureDependentChainPolicy</a></li>
+<li>~Trigger()&#160;:&#160;<a class="el" href="classgridfire_1_1trigger_1_1Trigger.html#a2c077ccbaf4de9f7068e50144391edda">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></li>
+<li>~WeakReactionMap()&#160;:&#160;<a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html#a73cc5a9d4a236091bbb40f22ed66b2f1">gridfire::rates::weak::WeakReactionMap</a></li>
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 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
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+$(document).ready(function(){initNavTree('generative_8h.html',''); initResizable(); });
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+<!-- Node85&#45;&gt;Node4 -->
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+<!-- Node85&#45;&gt;Node5 -->
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+<!-- Node85&#45;&gt;Node61 -->
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+<!-- Node85&#45;&gt;Node78 -->
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+<title>Node85&#45;&gt;Node78</title>
+<g id="a_edge91_Node000085_Node000078"><a xlink:title=" ">
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+<!-- Node87&#45;&gt;Node12 -->
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+<g id="a_edge95_Node000087_Node000012"><a xlink:title=" ">
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+<!-- Node87&#45;&gt;Node19 -->
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+<title>Node87&#45;&gt;Node19</title>
+<g id="a_edge96_Node000087_Node000019"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1185.8,-332.8C1109.72,-316.68 973.72,-282.7 868,-228 848.58,-217.95 849.28,-206.18 829,-198 761.81,-170.92 553.31,-215.98 505,-162 393.66,-37.61 764.1,-15.32 888.61,-11.35"/>
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+<!-- Node87&#45;&gt;Node85 -->
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+<title>Node87&#45;&gt;Node85</title>
+<g id="a_edge94_Node000087_Node000085"><a xlink:title=" ">
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+<!-- Node88&#45;&gt;Node5 -->
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+<path fill="none" stroke="#63b8ff" d="M1287.24,-401.3C1312.12,-382.05 1373.71,-334.31 1425,-294 1438.49,-283.4 1530.41,-205.17 1546,-198 1566.22,-188.71 1693.43,-166.1 1771.55,-152.78"/>
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+<!-- Node88&#45;&gt;Node85 -->
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+<!-- Node88&#45;&gt;Node87 -->
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+<g id="a_edge99_Node000088_Node000087"><a xlink:title=" ">
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+<!-- Node89&#45;&gt;Node4 -->
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+<title>Node89&#45;&gt;Node4</title>
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+<!-- Node89&#45;&gt;Node8 -->
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+<!-- Node89&#45;&gt;Node15 -->
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+<!-- Node89&#45;&gt;Node83 -->
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+<!-- Node89&#45;&gt;Node85 -->
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+<title>Node75&#45;&gt;Node76</title>
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+<title>Node52&#45;&gt;Node9</title>
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+<title>Node52&#45;&gt;Node10</title>
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 <h2 class="groupheader">Function Documentation</h2>
@@ -143,22 +136,31 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">int gf_construct_engine_from_policy </td>
           <td>(</td>
-          <td class="paramtype">void *</td>          <td class="paramname"><span class="paramname"><em>ptr</em></span>, </td>
+          <td class="paramtype">void *&#160;</td>
+          <td class="paramname"><em>ptr</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const char *</td>          <td class="paramname"><span class="paramname"><em>policy_name</em></span>, </td>
+          <td class="paramtype">const char *&#160;</td>
+          <td class="paramname"><em>policy_name</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double *</td>          <td class="paramname"><span class="paramname"><em>abundances</em></span>, </td>
+          <td class="paramtype">const double *&#160;</td>
+          <td class="paramname"><em>abundances</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const size_t</td>          <td class="paramname"><span class="paramname"><em>num_species</em></span>&#160;)</td>
+          <td class="paramtype">const size_t&#160;</td>
+          <td class="paramname"><em>num_species</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -174,12 +176,19 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">int gf_construct_solver_from_engine </td>
           <td>(</td>
-          <td class="paramtype">void *</td>          <td class="paramname"><span class="paramname"><em>ptr</em></span>, </td>
+          <td class="paramtype">void *&#160;</td>
+          <td class="paramname"><em>ptr</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const char *</td>          <td class="paramname"><span class="paramname"><em>solver_name</em></span>&#160;)</td>
+          <td class="paramtype">const char *&#160;</td>
+          <td class="paramname"><em>solver_name</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -195,7 +204,8 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">char * gf_error_code_to_string </td>
           <td>(</td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>error_code</em></span></td><td>)</td>
+          <td class="paramtype">const int&#160;</td>
+          <td class="paramname"><em>error_code</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -212,72 +222,91 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">int gf_evolve </td>
           <td>(</td>
-          <td class="paramtype">void *</td>          <td class="paramname"><span class="paramname"><em>ptr</em></span>, </td>
+          <td class="paramtype">void *&#160;</td>
+          <td class="paramname"><em>ptr</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double *</td>          <td class="paramname"><span class="paramname"><em>Y_in</em></span>, </td>
+          <td class="paramtype">const double *&#160;</td>
+          <td class="paramname"><em>Y_in</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const size_t</td>          <td class="paramname"><span class="paramname"><em>num_species</em></span>, </td>
+          <td class="paramtype">const size_t&#160;</td>
+          <td class="paramname"><em>num_species</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>T</em></span>, </td>
+          <td class="paramtype">const double&#160;</td>
+          <td class="paramname"><em>T</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+          <td class="paramtype">const double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>tMax</em></span>, </td>
+          <td class="paramtype">const double&#160;</td>
+          <td class="paramname"><em>tMax</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double</td>          <td class="paramname"><span class="paramname"><em>dt0</em></span>, </td>
+          <td class="paramtype">const double&#160;</td>
+          <td class="paramname"><em>dt0</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double *</td>          <td class="paramname"><span class="paramname"><em>Y_out</em></span>, </td>
+          <td class="paramtype">double *&#160;</td>
+          <td class="paramname"><em>Y_out</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double *</td>          <td class="paramname"><span class="paramname"><em>energy_out</em></span>, </td>
+          <td class="paramtype">double *&#160;</td>
+          <td class="paramname"><em>energy_out</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double *</td>          <td class="paramname"><span class="paramname"><em>dEps_dT</em></span>, </td>
+          <td class="paramtype">double *&#160;</td>
+          <td class="paramname"><em>dEps_dT</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double *</td>          <td class="paramname"><span class="paramname"><em>dEps_dRho</em></span>, </td>
+          <td class="paramtype">double *&#160;</td>
+          <td class="paramname"><em>dEps_dRho</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double *</td>          <td class="paramname"><span class="paramname"><em>specific_neutrino_energy_loss</em></span>, </td>
+          <td class="paramtype">double *&#160;</td>
+          <td class="paramname"><em>specific_neutrino_energy_loss</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double *</td>          <td class="paramname"><span class="paramname"><em>specific_neutrino_flux</em></span>, </td>
+          <td class="paramtype">double *&#160;</td>
+          <td class="paramname"><em>specific_neutrino_flux</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double *</td>          <td class="paramname"><span class="paramname"><em>mass_lost</em></span>&#160;)</td>
+          <td class="paramtype">double *&#160;</td>
+          <td class="paramname"><em>mass_lost</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
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@@ -293,7 +322,8 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void gf_free </td>
           <td>(</td>
-          <td class="paramtype">void *</td>          <td class="paramname"><span class="paramname"><em>ctx</em></span></td><td>)</td>
+          <td class="paramtype">void *&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
           <td></td>
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@@ -310,7 +340,8 @@ Functions</h2></td></tr>
         <tr>
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           <td>(</td>
-          <td class="paramtype">void *</td>          <td class="paramname"><span class="paramname"><em>ptr</em></span></td><td>)</td>
+          <td class="paramtype">void *&#160;</td>
+          <td class="paramname"><em>ptr</em></td><td>)</td>
           <td></td>
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@@ -327,7 +358,7 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void * gf_init </td>
           <td>(</td>
-          <td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
+          <td class="paramname"></td><td>)</td>
           <td></td>
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           <td>(</td>
-          <td class="paramtype">void *</td>          <td class="paramname"><span class="paramname"><em>ptr</em></span>, </td>
+          <td class="paramtype">void *&#160;</td>
+          <td class="paramname"><em>ptr</em>, </td>
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           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>num_species</em></span>, </td>
+          <td class="paramtype">const int&#160;</td>
+          <td class="paramname"><em>num_species</em>, </td>
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-          <td class="paramtype">const char **</td>          <td class="paramname"><span class="paramname"><em>species_names</em></span>&#160;)</td>
+          <td class="paramtype">const char **&#160;</td>
+          <td class="paramname"><em>species_names</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
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+<!-- Node80&#45;&gt;Node10 -->
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+<!-- Node80&#45;&gt;Node19 -->
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+<!-- Node88&#45;&gt;Node5 -->
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+<!-- Node88&#45;&gt;Node87 -->
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+<!-- Node89&#45;&gt;Node4 -->
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+<!-- Node89&#45;&gt;Node12 -->
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+<!-- Node89&#45;&gt;Node83 -->
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+<!-- Node89&#45;&gt;Node85 -->
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+<!-- Node88&#45;&gt;Node5 -->
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+<!-- Node88&#45;&gt;Node87 -->
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+<!-- Node89&#45;&gt;Node4 -->
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+<!-- Node89&#45;&gt;Node83 -->
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+&#160;&#160;<a class="el" href="gridfire__extern_8h.html#a356f381bb83c032241c5cdab44a5d828a35ddf5ec93ac14ae4bb6c15136958af0">GF_JACOBIAN_ERROR</a> = 14
+, <a class="el" href="gridfire__extern_8h.html#a356f381bb83c032241c5cdab44a5d828ac8b987908b121b282b6a970493c53d9a">GF_ENGINE_ERROR</a> = 15
+, <a class="el" href="gridfire__extern_8h.html#a356f381bb83c032241c5cdab44a5d828a2b0b126d30f2504f2f3aeb101b7856aa">GF_MISSING_BASE_REACTION_ERROR</a> = 16
+, <a class="el" href="gridfire__extern_8h.html#a356f381bb83c032241c5cdab44a5d828a4c64ce0edc9df9a12b7eb3e86842acb4">GF_MISSING_SEED_SPECIES_ERROR</a> = 17
 , <br />
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-, <a class="el" href="#a356f381bb83c032241c5cdab44a5d828a2200c512266154c94cb12e535043a4d4">GF_POLICY_ERROR</a> = 19
-, <a class="el" href="#a356f381bb83c032241c5cdab44a5d828a2a58eeed96e3b31a23733a43bc96aace">GF_REACTION_PARSING_ERROR</a> = 20
-, <a class="el" href="#a356f381bb83c032241c5cdab44a5d828a1a5ad34aeb15eaf4dca51f81bc7a4fed">GF_REACTION_ERROR</a> = 21
+&#160;&#160;<a class="el" href="gridfire__extern_8h.html#a356f381bb83c032241c5cdab44a5d828ae47f8bc2eb22a77ac95993b2baa37c35">GF_MISSING_KEY_REACTION_ERROR</a> = 18
+, <a class="el" href="gridfire__extern_8h.html#a356f381bb83c032241c5cdab44a5d828a2200c512266154c94cb12e535043a4d4">GF_POLICY_ERROR</a> = 19
+, <a class="el" href="gridfire__extern_8h.html#a356f381bb83c032241c5cdab44a5d828a2a58eeed96e3b31a23733a43bc96aace">GF_REACTION_PARSING_ERROR</a> = 20
+, <a class="el" href="gridfire__extern_8h.html#a356f381bb83c032241c5cdab44a5d828a1a5ad34aeb15eaf4dca51f81bc7a4fed">GF_REACTION_ERROR</a> = 21
 , <br />
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-, <a class="el" href="#a356f381bb83c032241c5cdab44a5d828a96bc6c2c47cfdc396eb2f6bde285943b">GF_ILL_CONDITIONED_JACOBIAN_ERROR</a> = 23
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+&#160;&#160;<a class="el" href="gridfire__extern_8h.html#a356f381bb83c032241c5cdab44a5d828a7188c09db61a3f8dc1824363b7b30708">GF_SINGULAR_JACOBIAN_ERROR</a> = 22
+, <a class="el" href="gridfire__extern_8h.html#a356f381bb83c032241c5cdab44a5d828a96bc6c2c47cfdc396eb2f6bde285943b">GF_ILL_CONDITIONED_JACOBIAN_ERROR</a> = 23
+, <a class="el" href="gridfire__extern_8h.html#a356f381bb83c032241c5cdab44a5d828a9d671ac538c996be0202e6525ad1c2ca">GF_CVODE_SOLVER_FAILURE_ERROR</a> = 24
+, <a class="el" href="gridfire__extern_8h.html#a356f381bb83c032241c5cdab44a5d828a8e1a8eb541be83ef7071fcbca3a144ca">GF_KINSOL_SOLVER_FAILURE_ERROR</a> = 25
 , <br />
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-, <a class="el" href="#a356f381bb83c032241c5cdab44a5d828ac42076a26785008b8618ec715976ff35">GF_SOLVER_ERROR</a> = 27
-, <a class="el" href="#a356f381bb83c032241c5cdab44a5d828a9a57ef6d36fcf8961b5a113673cf9087">GF_HASHING_ERROR</a> = 28
-, <a class="el" href="#a356f381bb83c032241c5cdab44a5d828aed54d3f628971ab1bc7713a82bc834c3">GF_UTILITY_ERROR</a> = 29
+&#160;&#160;<a class="el" href="gridfire__extern_8h.html#a356f381bb83c032241c5cdab44a5d828ac21a70b23fa7c60b866d11b6c60ba366">GF_SUNDIALS_ERROR</a> = 26
+, <a class="el" href="gridfire__extern_8h.html#a356f381bb83c032241c5cdab44a5d828ac42076a26785008b8618ec715976ff35">GF_SOLVER_ERROR</a> = 27
+, <a class="el" href="gridfire__extern_8h.html#a356f381bb83c032241c5cdab44a5d828a9a57ef6d36fcf8961b5a113673cf9087">GF_HASHING_ERROR</a> = 28
+, <a class="el" href="gridfire__extern_8h.html#a356f381bb83c032241c5cdab44a5d828aed54d3f628971ab1bc7713a82bc834c3">GF_UTILITY_ERROR</a> = 29
 , <br />
-&#160;&#160;<a class="el" href="#a356f381bb83c032241c5cdab44a5d828a6ad462fe6e7b47aa4d77eda129dbe799">GF_DEBUG_ERROR</a> = 30
-, <a class="el" href="#a356f381bb83c032241c5cdab44a5d828a63ccd4c867da53dd7b01673b295f8523">GF_GRIDFIRE_ERROR</a> = 31
+&#160;&#160;<a class="el" href="gridfire__extern_8h.html#a356f381bb83c032241c5cdab44a5d828a6ad462fe6e7b47aa4d77eda129dbe799">GF_DEBUG_ERROR</a> = 30
+, <a class="el" href="gridfire__extern_8h.html#a356f381bb83c032241c5cdab44a5d828a63ccd4c867da53dd7b01673b295f8523">GF_GRIDFIRE_ERROR</a> = 31
 <br />
  }</td></tr>
 <tr class="separator:a356f381bb83c032241c5cdab44a5d828"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:a851d8c23bdc73852988b870c5f409639" id="r_a851d8c23bdc73852988b870c5f409639"><td class="memItemLeft" align="right" valign="top">char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a851d8c23bdc73852988b870c5f409639">gf_get_last_error_message</a> (void *ptr)</td></tr>
+<tr class="memitem:a851d8c23bdc73852988b870c5f409639" id="r_a851d8c23bdc73852988b870c5f409639"><td class="memItemLeft" align="right" valign="top">char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="gridfire__extern_8h.html#a851d8c23bdc73852988b870c5f409639">gf_get_last_error_message</a> (void *ptr)</td></tr>
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+<tr class="memitem:ac7089c7bad97d0ffe7c9445dcd0258f2" id="r_ac7089c7bad97d0ffe7c9445dcd0258f2"><td class="memItemLeft" align="right" valign="top">char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="gridfire__extern_8h.html#ac7089c7bad97d0ffe7c9445dcd0258f2">gf_error_code_to_string</a> (int error_code)</td></tr>
 <tr class="separator:ac7089c7bad97d0ffe7c9445dcd0258f2"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa06d49e737afd147061f4f15e6e5afcc" id="r_aa06d49e737afd147061f4f15e6e5afcc"><td class="memItemLeft" align="right" valign="top">void *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa06d49e737afd147061f4f15e6e5afcc">gf_init</a> ()</td></tr>
+<tr class="memitem:aa06d49e737afd147061f4f15e6e5afcc" id="r_aa06d49e737afd147061f4f15e6e5afcc"><td class="memItemLeft" align="right" valign="top">void *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="gridfire__extern_8h.html#aa06d49e737afd147061f4f15e6e5afcc">gf_init</a> ()</td></tr>
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-<tr class="memitem:a5ddf1a13fef574a435fd76a7fb1bb374" id="r_a5ddf1a13fef574a435fd76a7fb1bb374"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5ddf1a13fef574a435fd76a7fb1bb374">gf_free</a> (void *ctx)</td></tr>
+<tr class="memitem:a5ddf1a13fef574a435fd76a7fb1bb374" id="r_a5ddf1a13fef574a435fd76a7fb1bb374"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="gridfire__extern_8h.html#a5ddf1a13fef574a435fd76a7fb1bb374">gf_free</a> (void *ctx)</td></tr>
 <tr class="separator:a5ddf1a13fef574a435fd76a7fb1bb374"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af7e09bf5cf979211260e715faaa3a680" id="r_af7e09bf5cf979211260e715faaa3a680"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af7e09bf5cf979211260e715faaa3a680">gf_register_species</a> (void *ptr, const int num_species, const char **species_names)</td></tr>
+<tr class="memitem:af7e09bf5cf979211260e715faaa3a680" id="r_af7e09bf5cf979211260e715faaa3a680"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="gridfire__extern_8h.html#af7e09bf5cf979211260e715faaa3a680">gf_register_species</a> (void *ptr, const int num_species, const char **species_names)</td></tr>
 <tr class="separator:af7e09bf5cf979211260e715faaa3a680"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memitem:ae70b23310adcce0925900ca00a18a4a6" id="r_ae70b23310adcce0925900ca00a18a4a6"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="gridfire__extern_8h.html#ae70b23310adcce0925900ca00a18a4a6">gf_construct_engine_from_policy</a> (void *ptr, const char *policy_name, const double *abundances, size_t num_species)</td></tr>
 <tr class="separator:ae70b23310adcce0925900ca00a18a4a6"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a57d58696555e3402eddd043cea125f5e" id="r_a57d58696555e3402eddd043cea125f5e"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a57d58696555e3402eddd043cea125f5e">gf_construct_solver_from_engine</a> (void *ptr, const char *solver_name)</td></tr>
+<tr class="memitem:a57d58696555e3402eddd043cea125f5e" id="r_a57d58696555e3402eddd043cea125f5e"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="gridfire__extern_8h.html#a57d58696555e3402eddd043cea125f5e">gf_construct_solver_from_engine</a> (void *ptr, const char *solver_name)</td></tr>
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+<tr class="memitem:abde0ca38a62727d2f76f0bcd920bf124" id="r_abde0ca38a62727d2f76f0bcd920bf124"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="gridfire__extern_8h.html#abde0ca38a62727d2f76f0bcd920bf124">gf_evolve</a> (void *ptr, const double *Y_in, size_t num_species, double T, double rho, double tMax, double dt0, double *Y_out, double *energy_out, double *dEps_dT, double *dEps_dRho, double *specific_neutrino_energy_loss, double *specific_neutrino_flux, double *mass_lost)</td></tr>
 <tr class="separator:abde0ca38a62727d2f76f0bcd920bf124"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Enumeration Type Documentation</h2>
@@ -200,7 +193,7 @@ Functions</h2></td></tr>
 <div class="memproto">
       <table class="memname">
         <tr>
-          <td class="memname">enum <a class="el" href="#a94348e7f89768e5dbe4b60018a4af040">FDSSE_ERROR_CODES</a></td>
+          <td class="memname">enum <a class="el" href="gridfire__extern_8h.html#a94348e7f89768e5dbe4b60018a4af040">FDSSE_ERROR_CODES</a></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -223,7 +216,7 @@ Functions</h2></td></tr>
 <div class="memproto">
       <table class="memname">
         <tr>
-          <td class="memname">enum <a class="el" href="#a356f381bb83c032241c5cdab44a5d828">GF_ERROR_CODES</a></td>
+          <td class="memname">enum <a class="el" href="gridfire__extern_8h.html#a356f381bb83c032241c5cdab44a5d828">GF_ERROR_CODES</a></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -272,22 +265,31 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">int gf_construct_engine_from_policy </td>
           <td>(</td>
-          <td class="paramtype">void *</td>          <td class="paramname"><span class="paramname"><em>ptr</em></span>, </td>
+          <td class="paramtype">void *&#160;</td>
+          <td class="paramname"><em>ptr</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const char *</td>          <td class="paramname"><span class="paramname"><em>policy_name</em></span>, </td>
+          <td class="paramtype">const char *&#160;</td>
+          <td class="paramname"><em>policy_name</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double *</td>          <td class="paramname"><span class="paramname"><em>abundances</em></span>, </td>
+          <td class="paramtype">const double *&#160;</td>
+          <td class="paramname"><em>abundances</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">size_t</td>          <td class="paramname"><span class="paramname"><em>num_species</em></span>&#160;)</td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>num_species</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -303,12 +305,19 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">int gf_construct_solver_from_engine </td>
           <td>(</td>
-          <td class="paramtype">void *</td>          <td class="paramname"><span class="paramname"><em>ptr</em></span>, </td>
+          <td class="paramtype">void *&#160;</td>
+          <td class="paramname"><em>ptr</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const char *</td>          <td class="paramname"><span class="paramname"><em>solver_name</em></span>&#160;)</td>
+          <td class="paramtype">const char *&#160;</td>
+          <td class="paramname"><em>solver_name</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -324,7 +333,8 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">char * gf_error_code_to_string </td>
           <td>(</td>
-          <td class="paramtype">int</td>          <td class="paramname"><span class="paramname"><em>error_code</em></span></td><td>)</td>
+          <td class="paramtype">int&#160;</td>
+          <td class="paramname"><em>error_code</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -341,72 +351,91 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">int gf_evolve </td>
           <td>(</td>
-          <td class="paramtype">void *</td>          <td class="paramname"><span class="paramname"><em>ptr</em></span>, </td>
+          <td class="paramtype">void *&#160;</td>
+          <td class="paramname"><em>ptr</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const double *</td>          <td class="paramname"><span class="paramname"><em>Y_in</em></span>, </td>
+          <td class="paramtype">const double *&#160;</td>
+          <td class="paramname"><em>Y_in</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">size_t</td>          <td class="paramname"><span class="paramname"><em>num_species</em></span>, </td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>num_species</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T</em></span>, </td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>tMax</em></span>, </td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>tMax</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>dt0</em></span>, </td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>dt0</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double *</td>          <td class="paramname"><span class="paramname"><em>Y_out</em></span>, </td>
+          <td class="paramtype">double *&#160;</td>
+          <td class="paramname"><em>Y_out</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double *</td>          <td class="paramname"><span class="paramname"><em>energy_out</em></span>, </td>
+          <td class="paramtype">double *&#160;</td>
+          <td class="paramname"><em>energy_out</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double *</td>          <td class="paramname"><span class="paramname"><em>dEps_dT</em></span>, </td>
+          <td class="paramtype">double *&#160;</td>
+          <td class="paramname"><em>dEps_dT</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double *</td>          <td class="paramname"><span class="paramname"><em>dEps_dRho</em></span>, </td>
+          <td class="paramtype">double *&#160;</td>
+          <td class="paramname"><em>dEps_dRho</em>, </td>
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+    [ "gff_free", "gridfire__mod_8f90.html#a64b4012b59c5ddf025073c6a8bf467c3", null ],
+    [ "gff_init", "gridfire__mod_8f90.html#aa7a417138a7967e7eacd2d79339850eb", null ],
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+<div class="levels">[detail level <span onclick="javascript:toggleLevel(1);">1</span><span onclick="javascript:toggleLevel(2);">2</span><span onclick="javascript:toggleLevel(3);">3</span><span onclick="javascript:toggleLevel(4);">4</span><span onclick="javascript:toggleLevel(5);">5</span>]</div><table class="directory">
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+<tr id="row_14_0_1_0_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1BadCollectionError.html" target="_self">gridfire::exceptions::BadCollectionError</a></td><td class="desc">Exception for invalid composition collection in the engine </td></tr>
+<tr id="row_14_0_1_1_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1BadRHSEngineError.html" target="_self">gridfire::exceptions::BadRHSEngineError</a></td><td class="desc">Exception for errors in calculating the right-hand side (RHS) </td></tr>
+<tr id="row_14_0_1_2_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1FailedToPartitionEngineError.html" target="_self">gridfire::exceptions::FailedToPartitionEngineError</a></td><td class="desc">Exception for failures in partitioning the engine </td></tr>
+<tr id="row_14_0_1_3_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1InvalidQSESolutionError.html" target="_self">gridfire::exceptions::InvalidQSESolutionError</a></td><td class="desc">Exception for invalid QSE solution in the engine </td></tr>
+<tr id="row_14_0_1_4_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_14_0_1_4_" class="arrow" onclick="toggleFolder('14_0_1_4_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1JacobianError.html" target="_self">gridfire::exceptions::JacobianError</a></td><td class="desc">Base class for Jacobian-related exceptions </td></tr>
+<tr id="row_14_0_1_4_0_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1StaleJacobianError.html" target="_self">gridfire::exceptions::StaleJacobianError</a></td><td class="desc">Exception for stale Jacobian matrix access </td></tr>
+<tr id="row_14_0_1_4_1_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1UninitializedJacobianError.html" target="_self">gridfire::exceptions::UninitializedJacobianError</a></td><td class="desc">Exception for uninitialized Jacobian matrix access </td></tr>
+<tr id="row_14_0_1_4_2_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1UnknownJacobianError.html" target="_self">gridfire::exceptions::UnknownJacobianError</a></td><td class="desc">Exception for unknown Jacobian matrix access </td></tr>
+<tr id="row_14_0_1_5_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1NetworkResizedError.html" target="_self">gridfire::exceptions::NetworkResizedError</a></td><td class="desc">Exception for errors during network resizing </td></tr>
+<tr id="row_14_0_1_6_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1UnableToSetNetworkReactionsError.html" target="_self">gridfire::exceptions::UnableToSetNetworkReactionsError</a></td><td class="desc">Exception for failures in setting network reactions </td></tr>
+<tr id="row_14_0_2_" class="odd" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_14_0_2_" class="arrow" onclick="toggleFolder('14_0_2_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1PolicyError.html" target="_self">gridfire::exceptions::PolicyError</a></td><td class="desc">Base class for all exceptions related to network policy operations </td></tr>
+<tr id="row_14_0_2_0_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1MissingBaseReactionError.html" target="_self">gridfire::exceptions::MissingBaseReactionError</a></td><td class="desc">Exception thrown when a required reaction is missing from the underlying database (e.g., REACLIB) </td></tr>
+<tr id="row_14_0_2_1_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1MissingKeyReactionError.html" target="_self">gridfire::exceptions::MissingKeyReactionError</a></td><td class="desc">Exception thrown when a constructed network fails to include a key reaction required by the policy </td></tr>
+<tr id="row_14_0_2_2_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1MissingSeedSpeciesError.html" target="_self">gridfire::exceptions::MissingSeedSpeciesError</a></td><td class="desc">Exception thrown when a required seed species is not found in the initial composition </td></tr>
+<tr id="row_14_0_3_" class="odd" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_14_0_3_" class="arrow" onclick="toggleFolder('14_0_3_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html" target="_self">gridfire::exceptions::ReactionError</a></td><td class="desc">Base class for all exceptions related to reaction operations </td></tr>
+<tr id="row_14_0_3_0_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1ReactionParsingError.html" target="_self">gridfire::exceptions::ReactionParsingError</a></td><td class="desc"></td></tr>
+<tr id="row_14_0_4_" class="odd" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_14_0_4_" class="arrow" onclick="toggleFolder('14_0_4_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1SolverError.html" target="_self">gridfire::exceptions::SolverError</a></td><td class="desc">Base class for all exceptions related to solver operations </td></tr>
+<tr id="row_14_0_4_0_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1IllConditionedJacobianError.html" target="_self">gridfire::exceptions::IllConditionedJacobianError</a></td><td class="desc">Exception thrown when the Jacobian matrix is ill-conditioned </td></tr>
+<tr id="row_14_0_4_1_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_14_0_4_1_" class="arrow" onclick="toggleFolder('14_0_4_1_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1SUNDIALSError.html" target="_self">gridfire::exceptions::SUNDIALSError</a></td><td class="desc">Base class for exceptions related to SUNDIALS solver operations </td></tr>
+<tr id="row_14_0_4_1_0_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1CVODESolverFailureError.html" target="_self">gridfire::exceptions::CVODESolverFailureError</a></td><td class="desc">Exception for failures in the CVODE solver </td></tr>
+<tr id="row_14_0_4_1_1_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1KINSolSolverFailureError.html" target="_self">gridfire::exceptions::KINSolSolverFailureError</a></td><td class="desc">Exception for failures in the KINSOL solver </td></tr>
+<tr id="row_14_0_4_2_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1SingularJacobianError.html" target="_self">gridfire::exceptions::SingularJacobianError</a></td><td class="desc">Exception thrown when the Jacobian matrix is singular </td></tr>
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+<tr id="row_14_0_5_0_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1HashingError.html" target="_self">gridfire::exceptions::HashingError</a></td><td class="desc">Exception class for hashing-related errors in GridFire </td></tr>
+<tr id="row_15_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1FluxValidationResult.html" target="_self">gridfire::engine::MultiscalePartitioningEngineView::FluxValidationResult</a></td><td class="desc"></td></tr>
+<tr id="row_16_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structstd_1_1formatter_3_01gridfire_1_1engine_1_1NetworkJacobian_01_4.html" target="_self">std::formatter&lt; gridfire::engine::NetworkJacobian &gt;</a></td><td class="desc"></td></tr>
 <tr id="row_17_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacegridfire__mod_1_1gf__construct__engine__from__policy.html" target="_self">gridfire_mod::gf_construct_engine_from_policy</a></td><td class="desc"></td></tr>
 <tr id="row_18_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacegridfire__mod_1_1gf__construct__solver__from__engine.html" target="_self">gridfire_mod::gf_construct_solver_from_engine</a></td><td class="desc"></td></tr>
 <tr id="row_19_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacegridfire__mod_1_1gf__evolve.html" target="_self">gridfire_mod::gf_evolve</a></td><td class="desc"></td></tr>
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 <tr id="row_22_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacegridfire__mod_1_1gf__init.html" target="_self">gridfire_mod::gf_init</a></td><td class="desc"></td></tr>
 <tr id="row_23_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfacegridfire__mod_1_1gf__register__species.html" target="_self">gridfire_mod::gf_register_species</a></td><td class="desc"></td></tr>
 <tr id="row_24_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire__mod_1_1gridfire.html" target="_self">gridfire_mod::gridfire</a></td><td class="desc"></td></tr>
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+<tr id="row_52_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1AdaptiveEngineView_1_1ReactionFlow.html" target="_self">gridfire::engine::AdaptiveEngineView::ReactionFlow</a></td><td class="desc">A struct to hold a reaction and its flow rate </td></tr>
+<tr id="row_53_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1reaclib_1_1ReactionRecord.html" target="_self">gridfire::reaclib::ReactionRecord</a></td><td class="desc"></td></tr>
+<tr id="row_54_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html" target="_self">gridfire::reaction::ReactionSet</a></td><td class="desc"></td></tr>
+<tr id="row_55_" class="odd"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_55_" class="arrow" onclick="toggleFolder('55_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html" target="_self">gridfire::screening::ScreeningModel</a></td><td class="desc">An abstract base class for plasma screening models </td></tr>
+<tr id="row_55_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classPyScreening.html" target="_self">PyScreening</a></td><td class="desc"></td></tr>
+<tr id="row_55_1_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html" target="_self">gridfire::screening::BareScreeningModel</a></td><td class="desc">A screening model that applies no screening effect </td></tr>
+<tr id="row_55_2_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1screening_1_1IntermediateScreeningModel.html" target="_self">gridfire::screening::IntermediateScreeningModel</a></td><td class="desc"></td></tr>
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+<tr id="row_56_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_56_" class="arrow" onclick="toggleFolder('56_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1solver_1_1SolverContextBase.html" target="_self">gridfire::solver::SolverContextBase</a></td><td class="desc">Base class for solver callback contexts </td></tr>
+<tr id="row_56_0_" class="odd" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classPySolverContextBase.html" target="_self">PySolverContextBase</a></td><td class="desc"></td></tr>
+<tr id="row_56_1_" class="odd" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html" target="_self">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="desc">Immutable view of the current integration state passed to callbacks </td></tr>
+<tr id="row_57_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html" target="_self">gridfire::engine::StepDerivatives&lt; T &gt;</a></td><td class="desc">Structure holding derivatives and energy generation for a network step </td></tr>
+<tr id="row_58_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_58_" class="arrow" onclick="toggleFolder('58_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1utils_1_1TableBase.html" target="_self">gridfire::utils::TableBase</a></td><td class="desc"></td></tr>
+<tr id="row_58_0_" class="odd" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1utils_1_1Table.html" target="_self">gridfire::utils::Table&lt; T &gt;</a></td><td class="desc"></td></tr>
+<tr id="row_59_" class="odd"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_59_" class="arrow" onclick="toggleFolder('59_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html" target="_self">gridfire::trigger::Trigger&lt; TriggerContextStruct &gt;</a></td><td class="desc">Generic trigger interface for signaling events/conditions during integration </td></tr>
+<tr id="row_59_0_" class="even" style="display:none;"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_59_0_" class="arrow" onclick="toggleFolder('59_0_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1LogicalTrigger.html" target="_self">gridfire::trigger::LogicalTrigger&lt; TriggerContextStruct &gt;</a></td><td class="desc"></td></tr>
+<tr id="row_59_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html" target="_self">gridfire::trigger::AndTrigger&lt; TriggerContextStruct &gt;</a></td><td class="desc">Logical conjunction of two triggers with short-circuit evaluation </td></tr>
+<tr id="row_59_0_1_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html" target="_self">gridfire::trigger::EveryNthTrigger&lt; TriggerContextStruct &gt;</a></td><td class="desc">Pass-through trigger that fires every Nth time its child trigger is true </td></tr>
+<tr id="row_59_0_2_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html" target="_self">gridfire::trigger::NotTrigger&lt; TriggerContextStruct &gt;</a></td><td class="desc">Logical negation of a trigger </td></tr>
+<tr id="row_59_0_3_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html" target="_self">gridfire::trigger::OrTrigger&lt; TriggerContextStruct &gt;</a></td><td class="desc">Logical disjunction of two triggers with short-circuit evaluation </td></tr>
+<tr id="row_60_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_60_" class="arrow" onclick="toggleFolder('60_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html" target="_self">gridfire::trigger::Trigger&lt; gridfire::solver::CVODESolverStrategy::TimestepContext &gt;</a></td><td class="desc"></td></tr>
+<tr id="row_60_0_" class="odd" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html" target="_self">gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger</a></td><td class="desc"></td></tr>
+<tr id="row_60_1_" class="odd" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html" target="_self">gridfire::trigger::solver::CVODE::OffDiagonalTrigger</a></td><td class="desc">Triggers when any off-diagonal Jacobian entry magnitude exceeds a threshold </td></tr>
+<tr id="row_60_2_" class="odd" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html" target="_self">gridfire::trigger::solver::CVODE::SimulationTimeTrigger</a></td><td class="desc">Triggers when the current simulation time advances by at least a fixed interval </td></tr>
+<tr id="row_60_3_" class="odd" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html" target="_self">gridfire::trigger::solver::CVODE::TimestepCollapseTrigger</a></td><td class="desc">Triggers when the timestep deviates from its recent average beyond a threshold </td></tr>
+<tr id="row_61_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html" target="_self">gridfire::trigger::TriggerResult</a></td><td class="desc"></td></tr>
+<tr id="row_62_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver_1_1UserData.html" target="_self">gridfire::engine::MultiscalePartitioningEngineView::QSESolver::UserData</a></td><td class="desc"></td></tr>
+<tr id="row_63_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives.html" target="_self">gridfire::rates::weak::WeakRateDerivatives</a></td><td class="desc">Partial derivatives of the log10() fields w.r.t. (T9, log10(rho*Ye)) </td></tr>
+<tr id="row_64_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html" target="_self">gridfire::rates::weak::WeakRateInterpolator</a></td><td class="desc">3D table interpolator for tabulated weak reaction data by isotope </td></tr>
+<tr id="row_65_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html" target="_self">gridfire::rates::weak::WeakRatePayload</a></td><td class="desc">Interpolated weak-rate payload at a single state </td></tr>
+<tr id="row_66_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html" target="_self">gridfire::rates::weak::WeakReactionEntry</a></td><td class="desc">A single weak-reaction data point (type, state, and log values) </td></tr>
+<tr id="row_67_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html" target="_self">gridfire::rates::weak::WeakReactionMap</a></td><td class="desc">Index of available weak reactions keyed by species </td></tr>
 </table>
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-          [ "gridfire::engine::NetworkPrimingEngineView", "classgridfire_1_1engine_1_1_network_priming_engine_view.html", null ]
+    [ "gridfire::engine::GraphEngine::constants", "structgridfire_1_1engine_1_1GraphEngine_1_1constants.html", null ],
+    [ "gridfire::rates::weak::WeakReaction::constants", "structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html", null ],
+    [ "gridfire::solver::CVODESolverStrategy::CVODERHSOutputData", "structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODERHSOutputData.html", null ],
+    [ "gridfire::solver::CVODESolverStrategy::CVODEUserData", "structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html", null ],
+    [ "gridfire::engine::EnergyDerivatives", "structgridfire_1_1engine_1_1EnergyDerivatives.html", null ],
+    [ "gridfire::engine::Engine", "classgridfire_1_1engine_1_1Engine.html", [
+      [ "PyEngine", "classPyEngine.html", null ],
+      [ "gridfire::engine::DynamicEngine", "classgridfire_1_1engine_1_1DynamicEngine.html", [
+        [ "PyDynamicEngine", "classPyDynamicEngine.html", null ],
+        [ "gridfire::engine::AdaptiveEngineView", "classgridfire_1_1engine_1_1AdaptiveEngineView.html", null ],
+        [ "gridfire::engine::DefinedEngineView", "classgridfire_1_1engine_1_1DefinedEngineView.html", [
+          [ "gridfire::engine::FileDefinedEngineView", "classgridfire_1_1engine_1_1FileDefinedEngineView.html", null ],
+          [ "gridfire::engine::NetworkPrimingEngineView", "classgridfire_1_1engine_1_1NetworkPrimingEngineView.html", null ]
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-        [ "gridfire::engine::GraphEngine", "classgridfire_1_1engine_1_1_graph_engine.html", null ],
-        [ "gridfire::engine::MultiscalePartitioningEngineView", "classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view.html", null ]
+        [ "gridfire::engine::GraphEngine", "classgridfire_1_1engine_1_1GraphEngine.html", null ],
+        [ "gridfire::engine::MultiscalePartitioningEngineView", "classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html", null ]
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-    [ "gridfire::engine::EngineView< EngineT >", "classgridfire_1_1engine_1_1_engine_view.html", null ],
-    [ "gridfire::engine::EngineView< DynamicEngine >", "classgridfire_1_1engine_1_1_engine_view.html", [
-      [ "gridfire::engine::AdaptiveEngineView", "classgridfire_1_1engine_1_1_adaptive_engine_view.html", null ],
-      [ "gridfire::engine::DefinedEngineView", "classgridfire_1_1engine_1_1_defined_engine_view.html", null ],
-      [ "gridfire::engine::MultiscalePartitioningEngineView", "classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view.html", null ]
+    [ "gridfire::engine::EngineView< EngineT >", "classgridfire_1_1engine_1_1EngineView.html", null ],
+    [ "gridfire::engine::EngineView< DynamicEngine >", "classgridfire_1_1engine_1_1EngineView.html", [
+      [ "gridfire::engine::AdaptiveEngineView", "classgridfire_1_1engine_1_1AdaptiveEngineView.html", null ],
+      [ "gridfire::engine::DefinedEngineView", "classgridfire_1_1engine_1_1DefinedEngineView.html", null ],
+      [ "gridfire::engine::MultiscalePartitioningEngineView", "classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html", null ]
     ] ],
-    [ "gridfire::engine::EngineView< gridfire::engine::DynamicEngine >", "classgridfire_1_1engine_1_1_engine_view.html", [
-      [ "PyDynamicEngineView", "class_py_dynamic_engine_view.html", null ]
+    [ "gridfire::engine::EngineView< gridfire::engine::DynamicEngine >", "classgridfire_1_1engine_1_1EngineView.html", [
+      [ "PyDynamicEngineView", "classPyDynamicEngineView.html", null ]
     ] ],
-    [ "gridfire::engine::EngineView< gridfire::engine::Engine >", "classgridfire_1_1engine_1_1_engine_view.html", [
-      [ "PyEngineView", "class_py_engine_view.html", null ]
+    [ "gridfire::engine::EngineView< gridfire::engine::Engine >", "classgridfire_1_1engine_1_1EngineView.html", [
+      [ "PyEngineView", "classPyEngineView.html", null ]
     ] ],
     [ "std::exception", null, [
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-        [ "gridfire::exceptions::DebugException", "classgridfire_1_1exceptions_1_1_debug_exception.html", null ],
-        [ "gridfire::exceptions::EngineError", "classgridfire_1_1exceptions_1_1_engine_error.html", [
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-          [ "gridfire::exceptions::BadRHSEngineError", "classgridfire_1_1exceptions_1_1_bad_r_h_s_engine_error.html", null ],
-          [ "gridfire::exceptions::FailedToPartitionEngineError", "classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html", null ],
-          [ "gridfire::exceptions::InvalidQSESolutionError", "classgridfire_1_1exceptions_1_1_invalid_q_s_e_solution_error.html", null ],
-          [ "gridfire::exceptions::JacobianError", "classgridfire_1_1exceptions_1_1_jacobian_error.html", [
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-            [ "gridfire::exceptions::UninitializedJacobianError", "classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.html", null ],
-            [ "gridfire::exceptions::UnknownJacobianError", "classgridfire_1_1exceptions_1_1_unknown_jacobian_error.html", null ]
+      [ "gridfire::exceptions::GridFireError", "classgridfire_1_1exceptions_1_1GridFireError.html", [
+        [ "gridfire::exceptions::DebugException", "classgridfire_1_1exceptions_1_1DebugException.html", null ],
+        [ "gridfire::exceptions::EngineError", "classgridfire_1_1exceptions_1_1EngineError.html", [
+          [ "gridfire::exceptions::BadCollectionError", "classgridfire_1_1exceptions_1_1BadCollectionError.html", null ],
+          [ "gridfire::exceptions::BadRHSEngineError", "classgridfire_1_1exceptions_1_1BadRHSEngineError.html", null ],
+          [ "gridfire::exceptions::FailedToPartitionEngineError", "classgridfire_1_1exceptions_1_1FailedToPartitionEngineError.html", null ],
+          [ "gridfire::exceptions::InvalidQSESolutionError", "classgridfire_1_1exceptions_1_1InvalidQSESolutionError.html", null ],
+          [ "gridfire::exceptions::JacobianError", "classgridfire_1_1exceptions_1_1JacobianError.html", [
+            [ "gridfire::exceptions::StaleJacobianError", "classgridfire_1_1exceptions_1_1StaleJacobianError.html", null ],
+            [ "gridfire::exceptions::UninitializedJacobianError", "classgridfire_1_1exceptions_1_1UninitializedJacobianError.html", null ],
+            [ "gridfire::exceptions::UnknownJacobianError", "classgridfire_1_1exceptions_1_1UnknownJacobianError.html", null ]
           ] ],
-          [ "gridfire::exceptions::NetworkResizedError", "classgridfire_1_1exceptions_1_1_network_resized_error.html", null ],
-          [ "gridfire::exceptions::UnableToSetNetworkReactionsError", "classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html", null ]
+          [ "gridfire::exceptions::NetworkResizedError", "classgridfire_1_1exceptions_1_1NetworkResizedError.html", null ],
+          [ "gridfire::exceptions::UnableToSetNetworkReactionsError", "classgridfire_1_1exceptions_1_1UnableToSetNetworkReactionsError.html", null ]
         ] ],
-        [ "gridfire::exceptions::PolicyError", "classgridfire_1_1exceptions_1_1_policy_error.html", [
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-          [ "gridfire::exceptions::MissingKeyReactionError", "classgridfire_1_1exceptions_1_1_missing_key_reaction_error.html", null ],
-          [ "gridfire::exceptions::MissingSeedSpeciesError", "classgridfire_1_1exceptions_1_1_missing_seed_species_error.html", null ]
+        [ "gridfire::exceptions::PolicyError", "classgridfire_1_1exceptions_1_1PolicyError.html", [
+          [ "gridfire::exceptions::MissingBaseReactionError", "classgridfire_1_1exceptions_1_1MissingBaseReactionError.html", null ],
+          [ "gridfire::exceptions::MissingKeyReactionError", "classgridfire_1_1exceptions_1_1MissingKeyReactionError.html", null ],
+          [ "gridfire::exceptions::MissingSeedSpeciesError", "classgridfire_1_1exceptions_1_1MissingSeedSpeciesError.html", null ]
         ] ],
-        [ "gridfire::exceptions::ReactionError", "classgridfire_1_1exceptions_1_1_reaction_error.html", [
-          [ "gridfire::exceptions::ReactionParsingError", "classgridfire_1_1exceptions_1_1_reaction_parsing_error.html", null ]
+        [ "gridfire::exceptions::ReactionError", "classgridfire_1_1exceptions_1_1ReactionError.html", [
+          [ "gridfire::exceptions::ReactionParsingError", "classgridfire_1_1exceptions_1_1ReactionParsingError.html", null ]
         ] ],
-        [ "gridfire::exceptions::SolverError", "classgridfire_1_1exceptions_1_1_solver_error.html", [
-          [ "gridfire::exceptions::IllConditionedJacobianError", "classgridfire_1_1exceptions_1_1_ill_conditioned_jacobian_error.html", null ],
-          [ "gridfire::exceptions::SUNDIALSError", "classgridfire_1_1exceptions_1_1_s_u_n_d_i_a_l_s_error.html", [
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-            [ "gridfire::exceptions::KINSolSolverFailureError", "classgridfire_1_1exceptions_1_1_k_i_n_sol_solver_failure_error.html", null ]
+        [ "gridfire::exceptions::SolverError", "classgridfire_1_1exceptions_1_1SolverError.html", [
+          [ "gridfire::exceptions::IllConditionedJacobianError", "classgridfire_1_1exceptions_1_1IllConditionedJacobianError.html", null ],
+          [ "gridfire::exceptions::SUNDIALSError", "classgridfire_1_1exceptions_1_1SUNDIALSError.html", [
+            [ "gridfire::exceptions::CVODESolverFailureError", "classgridfire_1_1exceptions_1_1CVODESolverFailureError.html", null ],
+            [ "gridfire::exceptions::KINSolSolverFailureError", "classgridfire_1_1exceptions_1_1KINSolSolverFailureError.html", null ]
           ] ],
-          [ "gridfire::exceptions::SingularJacobianError", "classgridfire_1_1exceptions_1_1_singular_jacobian_error.html", null ]
+          [ "gridfire::exceptions::SingularJacobianError", "classgridfire_1_1exceptions_1_1SingularJacobianError.html", null ]
         ] ],
-        [ "gridfire::exceptions::UtilityError", "classgridfire_1_1exceptions_1_1_utility_error.html", [
-          [ "gridfire::exceptions::HashingError", "classgridfire_1_1exceptions_1_1_hashing_error.html", null ]
+        [ "gridfire::exceptions::UtilityError", "classgridfire_1_1exceptions_1_1UtilityError.html", [
+          [ "gridfire::exceptions::HashingError", "classgridfire_1_1exceptions_1_1HashingError.html", null ]
         ] ]
       ] ]
     ] ],
-    [ "gridfire::engine::MultiscalePartitioningEngineView::FluxValidationResult", "structgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_flux_validation_result.html", null ],
-    [ "std::formatter< gridfire::engine::NetworkJacobian >", "structstd_1_1formatter_3_01gridfire_1_1engine_1_1_network_jacobian_01_4.html", null ],
+    [ "gridfire::engine::MultiscalePartitioningEngineView::FluxValidationResult", "structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1FluxValidationResult.html", null ],
+    [ "std::formatter< gridfire::engine::NetworkJacobian >", "structstd_1_1formatter_3_01gridfire_1_1engine_1_1NetworkJacobian_01_4.html", null ],
     [ "gridfire_mod::gf_construct_engine_from_policy", "interfacegridfire__mod_1_1gf__construct__engine__from__policy.html", null ],
     [ "gridfire_mod::gf_construct_solver_from_engine", "interfacegridfire__mod_1_1gf__construct__solver__from__engine.html", null ],
     [ "gridfire_mod::gf_evolve", "interfacegridfire__mod_1_1gf__evolve.html", null ],
@@ -86,119 +86,113 @@ var hierarchy =
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     [ "gridfire_mod::gf_register_species", "interfacegridfire__mod_1_1gf__register__species.html", null ],
     [ "gridfire_mod::gridfire", "structgridfire__mod_1_1gridfire.html", null ],
-    [ "GridFireContext", "struct_grid_fire_context.html", null ],
-    [ "std::hash< gridfire::rates::weak::TableAxes >", "structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4.html", null ],
-    [ "std::hash< gridfire::reaction::Reaction >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html", null ],
-    [ "std::hash< gridfire::reaction::ReactionSet >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html", null ],
-    [ "gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope", "structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_identified_isotope.html", null ],
-    [ "gridfire::rates::weak::InterpolationError", "structgridfire_1_1rates_1_1weak_1_1_interpolation_error.html", null ],
-    [ "gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints", "structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_interpolation_points.html", null ],
-    [ "gridfire::partition::RauscherThielemannPartitionFunction::IsotopeData", "structgridfire_1_1partition_1_1_rauscher_thielemann_partition_function_1_1_isotope_data.html", null ],
-    [ "gridfire::rates::weak::IsotopeGrid", "structgridfire_1_1rates_1_1weak_1_1_isotope_grid.html", null ],
-    [ "gridfire::NetIn", "structgridfire_1_1_net_in.html", null ],
-    [ "gridfire::NetOut", "structgridfire_1_1_net_out.html", null ],
-    [ "gridfire::io::NetworkFileParser", "classgridfire_1_1io_1_1_network_file_parser.html", [
-      [ "PyNetworkFileParser", "class_py_network_file_parser.html", null ],
-      [ "gridfire::io::MESANetworkFileParser", "classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html", null ],
-      [ "gridfire::io::SimpleReactionListFileParser", "classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html", null ]
+    [ "GridFireContext", "structGridFireContext.html", null ],
+    [ "std::hash< gridfire::rates::weak::TableAxes >", "structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1TableAxes_01_4.html", null ],
+    [ "std::hash< gridfire::reaction::Reaction >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1Reaction_01_4.html", null ],
+    [ "std::hash< gridfire::reaction::ReactionSet >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1ReactionSet_01_4.html", null ],
+    [ "gridfire::partition::RauscherThielemannPartitionFunction::IdentifiedIsotope", "structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1IdentifiedIsotope.html", null ],
+    [ "gridfire::rates::weak::InterpolationError", "structgridfire_1_1rates_1_1weak_1_1InterpolationError.html", null ],
+    [ "gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints", "structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1InterpolationPoints.html", null ],
+    [ "gridfire::partition::RauscherThielemannPartitionFunction::IsotopeData", "structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1IsotopeData.html", null ],
+    [ "gridfire::rates::weak::IsotopeGrid", "structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html", null ],
+    [ "gridfire::NetIn", "structgridfire_1_1NetIn.html", null ],
+    [ "gridfire::NetOut", "structgridfire_1_1NetOut.html", null ],
+    [ "gridfire::io::NetworkFileParser", "classgridfire_1_1io_1_1NetworkFileParser.html", [
+      [ "PyNetworkFileParser", "classPyNetworkFileParser.html", null ],
+      [ "gridfire::io::MESANetworkFileParser", "classgridfire_1_1io_1_1MESANetworkFileParser.html", null ],
+      [ "gridfire::io::SimpleReactionListFileParser", "classgridfire_1_1io_1_1SimpleReactionListFileParser.html", null ]
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-    [ "gridfire::engine::NetworkJacobian", "classgridfire_1_1engine_1_1_network_jacobian.html", null ],
-    [ "gridfire::policy::NetworkPolicy", "classgridfire_1_1policy_1_1_network_policy.html", [
-      [ "PyNetworkPolicy", "class_py_network_policy.html", null ],
-      [ "gridfire::policy::MainSequencePolicy", "classgridfire_1_1policy_1_1_main_sequence_policy.html", null ]
+    [ "gridfire::engine::NetworkJacobian", "classgridfire_1_1engine_1_1NetworkJacobian.html", null ],
+    [ "gridfire::policy::NetworkPolicy", "classgridfire_1_1policy_1_1NetworkPolicy.html", [
+      [ "PyNetworkPolicy", "classPyNetworkPolicy.html", null ],
+      [ "gridfire::policy::MainSequencePolicy", "classgridfire_1_1policy_1_1MainSequencePolicy.html", null ]
     ] ],
-    [ "gridfire::solver::NetworkSolverStrategy< EngineT >", "classgridfire_1_1solver_1_1_network_solver_strategy.html", null ],
-    [ "gridfire::solver::NetworkSolverStrategy< engine::DynamicEngine >", "classgridfire_1_1solver_1_1_network_solver_strategy.html", [
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-      [ "gridfire::solver::CVODESolverStrategy", "classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html", null ]
+    [ "gridfire::solver::NetworkSolverStrategy< EngineT >", "classgridfire_1_1solver_1_1NetworkSolverStrategy.html", [
+      [ "PyDynamicNetworkSolverStrategy", "classPyDynamicNetworkSolverStrategy.html", null ],
+      [ "gridfire::solver::CVODESolverStrategy", "classgridfire_1_1solver_1_1CVODESolverStrategy.html", null ]
     ] ],
-    [ "gridfire::partition::PartitionFunction", "classgridfire_1_1partition_1_1_partition_function.html", [
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-      [ "gridfire::partition::CompositePartitionFunction", "classgridfire_1_1partition_1_1_composite_partition_function.html", null ],
-      [ "gridfire::partition::GroundStatePartitionFunction", "classgridfire_1_1partition_1_1_ground_state_partition_function.html", null ],
-      [ "gridfire::partition::RauscherThielemannPartitionFunction", "classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html", null ]
+    [ "gridfire::partition::PartitionFunction", "classgridfire_1_1partition_1_1PartitionFunction.html", [
+      [ "PyPartitionFunction", "classPyPartitionFunction.html", null ],
+      [ "gridfire::partition::CompositePartitionFunction", "classgridfire_1_1partition_1_1CompositePartitionFunction.html", null ],
+      [ "gridfire::partition::GroundStatePartitionFunction", "classgridfire_1_1partition_1_1GroundStatePartitionFunction.html", null ],
+      [ "gridfire::partition::RauscherThielemannPartitionFunction", "classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html", null ]
     ] ],
     [ "fourdst::plugin::PluginBase", null, [
-      [ "SolverPluginInterface", "class_solver_plugin_interface.html", null ]
+      [ "SolverPluginInterface", "classSolverPluginInterface.html", null ]
     ] ],
-    [ "gridfire::engine::GraphEngine::PrecomputedReaction", "structgridfire_1_1engine_1_1_graph_engine_1_1_precomputed_reaction.html", null ],
-    [ "gridfire::engine::PrimingReport", "structgridfire_1_1engine_1_1_priming_report.html", null ],
-    [ "gridfire::io::gen::PyFunctionDef", "structgridfire_1_1io_1_1gen_1_1_py_function_def.html", null ],
-    [ "gridfire::engine::MultiscalePartitioningEngineView::QSEGroup", "structgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html", null ],
-    [ "gridfire::engine::MultiscalePartitioningEngineView::QSESolver", "classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_solver.html", null ],
-    [ "gridfire::reaction::RateCoefficientSet", "structgridfire_1_1reaction_1_1_rate_coefficient_set.html", null ],
-    [ "gridfire::rates::weak::RateDataRow", "structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html", null ],
-    [ "gridfire::partition::record::RauscherThielemannPartitionDataRecord", "structgridfire_1_1partition_1_1record_1_1_rauscher_thielemann_partition_data_record.html", null ],
-    [ "gridfire::engine::Reaction", "classgridfire_1_1engine_1_1_reaction.html", [
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-      [ "gridfire::reaction::ReaclibReaction", "classgridfire_1_1reaction_1_1_reaclib_reaction.html", [
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-        [ "gridfire::reaction::WeakReaclibReaction", "classgridfire_1_1reaction_1_1_weak_reaclib_reaction.html", null ]
+    [ "gridfire::engine::GraphEngine::PrecomputedReaction", "structgridfire_1_1engine_1_1GraphEngine_1_1PrecomputedReaction.html", null ],
+    [ "gridfire::engine::PrimingReport", "structgridfire_1_1engine_1_1PrimingReport.html", null ],
+    [ "gridfire::io::gen::PyFunctionDef", "structgridfire_1_1io_1_1gen_1_1PyFunctionDef.html", null ],
+    [ "gridfire::engine::MultiscalePartitioningEngineView::QSEGroup", "structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html", null ],
+    [ "gridfire::engine::MultiscalePartitioningEngineView::QSESolver", "classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html", null ],
+    [ "gridfire::reaction::RateCoefficientSet", "structgridfire_1_1reaction_1_1RateCoefficientSet.html", null ],
+    [ "gridfire::rates::weak::RateDataRow", "structgridfire_1_1rates_1_1weak_1_1RateDataRow.html", null ],
+    [ "gridfire::partition::record::RauscherThielemannPartitionDataRecord", "structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html", null ],
+    [ "gridfire::reaction::Reaction", "classgridfire_1_1reaction_1_1Reaction.html", [
+      [ "gridfire::rates::weak::WeakReaction", "classgridfire_1_1rates_1_1weak_1_1WeakReaction.html", null ],
+      [ "gridfire::reaction::ReaclibReaction", "classgridfire_1_1reaction_1_1ReaclibReaction.html", [
+        [ "gridfire::reaction::LogicalReaclibReaction", "classgridfire_1_1reaction_1_1LogicalReaclibReaction.html", null ],
+        [ "gridfire::reaction::WeakReaclibReaction", "classgridfire_1_1reaction_1_1WeakReaclibReaction.html", null ]
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-      [ "gridfire::reaction::ReaclibReaction", "classgridfire_1_1reaction_1_1_reaclib_reaction.html", null ]
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-      [ "PyReactionChainPolicy", "class_py_reaction_chain_policy.html", null ],
-      [ "gridfire::policy::MultiReactionChainPolicy", "classgridfire_1_1policy_1_1_multi_reaction_chain_policy.html", [
-        [ "gridfire::policy::CNOChainPolicy", "classgridfire_1_1policy_1_1_c_n_o_chain_policy.html", null ],
-        [ "gridfire::policy::HotCNOChainPolicy", "classgridfire_1_1policy_1_1_hot_c_n_o_chain_policy.html", null ],
-        [ "gridfire::policy::MainSequenceReactionChainPolicy", "classgridfire_1_1policy_1_1_main_sequence_reaction_chain_policy.html", null ],
-        [ "gridfire::policy::ProtonProtonChainPolicy", "classgridfire_1_1policy_1_1_proton_proton_chain_policy.html", null ]
+    [ "gridfire::policy::ReactionChainPolicy", "classgridfire_1_1policy_1_1ReactionChainPolicy.html", [
+      [ "PyReactionChainPolicy", "classPyReactionChainPolicy.html", null ],
+      [ "gridfire::policy::MultiReactionChainPolicy", "classgridfire_1_1policy_1_1MultiReactionChainPolicy.html", [
+        [ "gridfire::policy::CNOChainPolicy", "classgridfire_1_1policy_1_1CNOChainPolicy.html", null ],
+        [ "gridfire::policy::HotCNOChainPolicy", "classgridfire_1_1policy_1_1HotCNOChainPolicy.html", null ],
+        [ "gridfire::policy::MainSequenceReactionChainPolicy", "classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html", null ],
+        [ "gridfire::policy::ProtonProtonChainPolicy", "classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html", null ]
       ] ],
-      [ "gridfire::policy::TemperatureDependentChainPolicy", "classgridfire_1_1policy_1_1_temperature_dependent_chain_policy.html", [
-        [ "gridfire::policy::CNOIChainPolicy", "classgridfire_1_1policy_1_1_c_n_o_i_chain_policy.html", null ],
-        [ "gridfire::policy::CNOIIChainPolicy", "classgridfire_1_1policy_1_1_c_n_o_i_i_chain_policy.html", null ],
-        [ "gridfire::policy::CNOIIIChainPolicy", "classgridfire_1_1policy_1_1_c_n_o_i_i_i_chain_policy.html", null ],
-        [ "gridfire::policy::CNOIVChainPolicy", "classgridfire_1_1policy_1_1_c_n_o_i_v_chain_policy.html", null ],
-        [ "gridfire::policy::HotCNOIChainPolicy", "classgridfire_1_1policy_1_1_hot_c_n_o_i_chain_policy.html", null ],
-        [ "gridfire::policy::HotCNOIIChainPolicy", "classgridfire_1_1policy_1_1_hot_c_n_o_i_i_chain_policy.html", null ],
-        [ "gridfire::policy::HotCNOIIIChainPolicy", "classgridfire_1_1policy_1_1_hot_c_n_o_i_i_i_chain_policy.html", null ],
-        [ "gridfire::policy::ProtonProtonIChainPolicy", "classgridfire_1_1policy_1_1_proton_proton_i_chain_policy.html", null ],
-        [ "gridfire::policy::ProtonProtonIIChainPolicy", "classgridfire_1_1policy_1_1_proton_proton_i_i_chain_policy.html", null ],
-        [ "gridfire::policy::ProtonProtonIIIChainPolicy", "classgridfire_1_1policy_1_1_proton_proton_i_i_i_chain_policy.html", null ],
-        [ "gridfire::policy::TripleAlphaChainPolicy", "classgridfire_1_1policy_1_1_triple_alpha_chain_policy.html", null ]
+      [ "gridfire::policy::TemperatureDependentChainPolicy", "classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html", [
+        [ "gridfire::policy::CNOIChainPolicy", "classgridfire_1_1policy_1_1CNOIChainPolicy.html", null ],
+        [ "gridfire::policy::CNOIIChainPolicy", "classgridfire_1_1policy_1_1CNOIIChainPolicy.html", null ],
+        [ "gridfire::policy::CNOIIIChainPolicy", "classgridfire_1_1policy_1_1CNOIIIChainPolicy.html", null ],
+        [ "gridfire::policy::CNOIVChainPolicy", "classgridfire_1_1policy_1_1CNOIVChainPolicy.html", null ],
+        [ "gridfire::policy::HotCNOIChainPolicy", "classgridfire_1_1policy_1_1HotCNOIChainPolicy.html", null ],
+        [ "gridfire::policy::HotCNOIIChainPolicy", "classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html", null ],
+        [ "gridfire::policy::HotCNOIIIChainPolicy", "classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html", null ],
+        [ "gridfire::policy::ProtonProtonIChainPolicy", "classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html", null ],
+        [ "gridfire::policy::ProtonProtonIIChainPolicy", "classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html", null ],
+        [ "gridfire::policy::ProtonProtonIIIChainPolicy", "classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html", null ],
+        [ "gridfire::policy::TripleAlphaChainPolicy", "classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html", null ]
       ] ]
     ] ],
-    [ "gridfire::engine::AdaptiveEngineView::ReactionFlow", "structgridfire_1_1engine_1_1_adaptive_engine_view_1_1_reaction_flow.html", null ],
-    [ "gridfire::reaclib::ReactionRecord", "structgridfire_1_1reaclib_1_1_reaction_record.html", null ],
-    [ "gridfire::engine::ReactionSet", "classgridfire_1_1engine_1_1_reaction_set.html", null ],
-    [ "gridfire::reaction::ReactionSet", "classgridfire_1_1reaction_1_1_reaction_set.html", null ],
-    [ "gridfire::screening::ScreeningModel", "classgridfire_1_1screening_1_1_screening_model.html", [
-      [ "PyScreening", "class_py_screening.html", null ],
-      [ "gridfire::screening::BareScreeningModel", "classgridfire_1_1screening_1_1_bare_screening_model.html", null ],
-      [ "gridfire::screening::IntermediateScreeningModel", "classgridfire_1_1screening_1_1_intermediate_screening_model.html", null ],
-      [ "gridfire::screening::WeakScreeningModel", "classgridfire_1_1screening_1_1_weak_screening_model.html", null ]
+    [ "gridfire::engine::AdaptiveEngineView::ReactionFlow", "structgridfire_1_1engine_1_1AdaptiveEngineView_1_1ReactionFlow.html", null ],
+    [ "gridfire::reaclib::ReactionRecord", "structgridfire_1_1reaclib_1_1ReactionRecord.html", null ],
+    [ "gridfire::reaction::ReactionSet", "classgridfire_1_1reaction_1_1ReactionSet.html", null ],
+    [ "gridfire::screening::ScreeningModel", "classgridfire_1_1screening_1_1ScreeningModel.html", [
+      [ "PyScreening", "classPyScreening.html", null ],
+      [ "gridfire::screening::BareScreeningModel", "classgridfire_1_1screening_1_1BareScreeningModel.html", null ],
+      [ "gridfire::screening::IntermediateScreeningModel", "classgridfire_1_1screening_1_1IntermediateScreeningModel.html", null ],
+      [ "gridfire::screening::WeakScreeningModel", "classgridfire_1_1screening_1_1WeakScreeningModel.html", null ]
     ] ],
-    [ "gridfire::solver::SolverContextBase", "classgridfire_1_1solver_1_1_solver_context_base.html", [
-      [ "PySolverContextBase", "class_py_solver_context_base.html", null ],
-      [ "gridfire::solver::CVODESolverStrategy::TimestepContext", "structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html", null ]
+    [ "gridfire::solver::SolverContextBase", "classgridfire_1_1solver_1_1SolverContextBase.html", [
+      [ "PySolverContextBase", "classPySolverContextBase.html", null ],
+      [ "gridfire::solver::CVODESolverStrategy::TimestepContext", "structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html", null ]
     ] ],
-    [ "gridfire::engine::StepDerivatives< T >", "structgridfire_1_1engine_1_1_step_derivatives.html", null ],
-    [ "gridfire::utils::TableBase", "classgridfire_1_1utils_1_1_table_base.html", [
-      [ "gridfire::utils::Table< T >", "classgridfire_1_1utils_1_1_table.html", null ]
+    [ "gridfire::engine::StepDerivatives< T >", "structgridfire_1_1engine_1_1StepDerivatives.html", null ],
+    [ "gridfire::utils::TableBase", "classgridfire_1_1utils_1_1TableBase.html", [
+      [ "gridfire::utils::Table< T >", "classgridfire_1_1utils_1_1Table.html", null ]
     ] ],
-    [ "gridfire::trigger::Trigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1_trigger.html", [
-      [ "gridfire::trigger::LogicalTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1_logical_trigger.html", [
-        [ "gridfire::trigger::AndTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1_and_trigger.html", null ],
-        [ "gridfire::trigger::EveryNthTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1_every_nth_trigger.html", null ],
-        [ "gridfire::trigger::NotTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1_not_trigger.html", null ],
-        [ "gridfire::trigger::OrTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1_or_trigger.html", null ]
+    [ "gridfire::trigger::Trigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1Trigger.html", [
+      [ "gridfire::trigger::LogicalTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1LogicalTrigger.html", [
+        [ "gridfire::trigger::AndTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1AndTrigger.html", null ],
+        [ "gridfire::trigger::EveryNthTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1EveryNthTrigger.html", null ],
+        [ "gridfire::trigger::NotTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1NotTrigger.html", null ],
+        [ "gridfire::trigger::OrTrigger< TriggerContextStruct >", "classgridfire_1_1trigger_1_1OrTrigger.html", null ]
       ] ]
     ] ],
-    [ "gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >", "classgridfire_1_1trigger_1_1_trigger.html", [
-      [ "gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html", null ],
-      [ "gridfire::trigger::solver::CVODE::OffDiagonalTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html", null ],
-      [ "gridfire::trigger::solver::CVODE::SimulationTimeTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html", null ],
-      [ "gridfire::trigger::solver::CVODE::TimestepCollapseTrigger", "classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html", null ]
+    [ "gridfire::trigger::Trigger< gridfire::solver::CVODESolverStrategy::TimestepContext >", "classgridfire_1_1trigger_1_1Trigger.html", [
+      [ "gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html", null ],
+      [ "gridfire::trigger::solver::CVODE::OffDiagonalTrigger", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html", null ],
+      [ "gridfire::trigger::solver::CVODE::SimulationTimeTrigger", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html", null ],
+      [ "gridfire::trigger::solver::CVODE::TimestepCollapseTrigger", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html", null ]
     ] ],
-    [ "gridfire::trigger::TriggerResult", "structgridfire_1_1trigger_1_1_trigger_result.html", null ],
-    [ "gridfire::engine::MultiscalePartitioningEngineView::QSESolver::UserData", "structgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_solver_1_1_user_data.html", null ],
-    [ "gridfire::rates::weak::WeakRateDerivatives", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html", null ],
-    [ "gridfire::rates::weak::WeakRateInterpolator", "classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html", null ],
-    [ "gridfire::rates::weak::WeakRatePayload", "structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html", null ],
-    [ "gridfire::rates::weak::WeakReactionEntry", "structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html", null ],
-    [ "gridfire::rates::weak::WeakReactionMap", "classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html", null ]
+    [ "gridfire::trigger::TriggerResult", "structgridfire_1_1trigger_1_1TriggerResult.html", null ],
+    [ "gridfire::engine::MultiscalePartitioningEngineView::QSESolver::UserData", "structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver_1_1UserData.html", null ],
+    [ "gridfire::rates::weak::WeakRateDerivatives", "structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives.html", null ],
+    [ "gridfire::rates::weak::WeakRateInterpolator", "classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html", null ],
+    [ "gridfire::rates::weak::WeakRatePayload", "structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html", null ],
+    [ "gridfire::rates::weak::WeakReactionEntry", "structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html", null ],
+    [ "gridfire::rates::weak::WeakReactionMap", "classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html", null ]
 ];
\ No newline at end of file
diff --git a/docs/html/index.html b/docs/html/index.html
index 7b08941a..0d5f1b2d 100644
--- a/docs/html/index.html
+++ b/docs/html/index.html
@@ -3,18 +3,16 @@
 <head>
 <meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
 <meta http-equiv="X-UA-Compatible" content="IE=11"/>
-<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="generator" content="Doxygen 1.9.8"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
 <title>GridFire: GridFire</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
 <link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
 <script type="text/javascript" src="navtreedata.js"></script>
 <script type="text/javascript" src="navtree.js"></script>
-<script type="text/javascript" src="resize.js"></script>
-<script type="text/javascript" src="cookie.js"></script>
 <link href="search/search.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="search/searchdata.js"></script>
 <script type="text/javascript" src="search/search.js"></script>
@@ -29,7 +27,7 @@
  <tbody>
  <tr id="projectrow">
   <td id="projectalign">
-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
    </div>
    <div id="projectbrief">General Purpose Nuclear Network</div>
   </td>
@@ -38,24 +36,19 @@
 </table>
 </div>
 <!-- end header part -->
-<!-- Generated by Doxygen 1.13.2 -->
+<!-- Generated by Doxygen 1.9.8 -->
 <script type="text/javascript">
 /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
 var searchBox = new SearchBox("searchBox", "search/",'.html');
 /* @license-end */
 </script>
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
-$(function() { codefold.init(0); });
-/* @license-end */
-</script>
 <script type="text/javascript" src="menudata.js"></script>
 <script type="text/javascript" src="menu.js"></script>
 <script type="text/javascript">
 /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
 $(function() {
-  initMenu('',true,false,'search.php','Search',true);
-  $(function() { init_search(); });
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
 });
 /* @license-end */
 </script>
@@ -73,7 +66,7 @@ $(function() {
 </div>
 <script type="text/javascript">
 /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
-$(function(){initNavTree('index.html',''); initResizable(true); });
+$(document).ready(function(){initNavTree('index.html',''); initResizable(); });
 /* @license-end */
 </script>
 <div id="doc-content">
@@ -145,16 +138,16 @@ pypi</h3>
 <td class="markdownTableBodyNone">0.5.0   </td><td class="markdownTableBodyNone">Linux   </td><td class="markdownTableBodyNone">x86_64   </td><td class="markdownTableBodyNone">3.8, 3.9, 3.10, 3.11, 3.12, 3.13 (std &amp; t), 3.14 (std &amp; t)   </td><td class="markdownTableBodyNone">3.10, 3.11   </td></tr>
 </table>
 <blockquote class="doxtable">
-<p><b>Note</b>: Currently macOS x86_64 does <b>not</b> have a precompiled wheel. Due to that platform being phased out it is likely that there will never be precompiled wheels or releases for it. </p>
+<p>&zwj;<b>Note</b>: Currently macOS x86_64 does <b>not</b> have a precompiled wheel. Due to that platform being phased out it is likely that there will never be precompiled wheels or releases for it. </p>
 </blockquote>
 <blockquote class="doxtable">
-<p><b>Note:</b> macOS wheels were targeted to macOS 12 Monterey and should work on any version more recent than that (at least as of August 2025). </p>
+<p>&zwj;<b>Note:</b> macOS wheels were targeted to macOS 12 Monterey and should work on any version more recent than that (at least as of August 2025). </p>
 </blockquote>
 <blockquote class="doxtable">
-<p><b>Note:</b> Linux wheels were compiled using manylinux_2_28 and are expected to work on Debian 10+, Ubuntu 18.10+, Fedora 29+, or CentOS/RHEL 8+ </p>
+<p>&zwj;<b>Note:</b> Linux wheels were compiled using manylinux_2_28 and are expected to work on Debian 10+, Ubuntu 18.10+, Fedora 29+, or CentOS/RHEL 8+ </p>
 </blockquote>
 <blockquote class="doxtable">
-<p><b>Note:</b> If your system does not have a prebuilt wheel the source distribution will download from pypi and try to build. This may simply not work if you do not have the correct system dependencies installed. If it fails the best bet is to try to build boost &gt;= 1.83.0 from source and install (<a href="https://www.boost.org/">https://www.boost.org/</a>) as that is the most common broken dependency. </p>
+<p>&zwj;<b>Note:</b> If your system does not have a prebuilt wheel the source distribution will download from pypi and try to build. This may simply not work if you do not have the correct system dependencies installed. If it fails the best bet is to try to build boost &gt;= 1.83.0 from source and install (<a href="https://www.boost.org/">https://www.boost.org/</a>) as that is the most common broken dependency. </p>
 </blockquote>
 <h3><a class="anchor" id="autotoc_md8"></a>
 source</h3>
@@ -163,10 +156,10 @@ source</h3>
 <div class="line">cd GridFire</div>
 <div class="line">pip install .</div>
 </div><!-- fragment --><blockquote class="doxtable">
-<p><b>Note:</b> that if you do not have all system dependencies installed this will fail, the steps in further sections address these in more detail. </p>
+<p>&zwj;<b>Note:</b> that if you do not have all system dependencies installed this will fail, the steps in further sections address these in more detail. </p>
 </blockquote>
 <blockquote class="doxtable">
-<p><b>Note:</b> If you are using macos you should use the included <code>pip_install_mac_patch.sh</code> script instead of <code>pip install .</code> as this will automatically patch the build shared object libraries such that they can be loaded by the macos dynamic loader. </p>
+<p>&zwj;<b>Note:</b> If you are using macos you should use the included <code>pip_install_mac_patch.sh</code> script instead of <code>pip install .</code> as this will automatically patch the build shared object libraries such that they can be loaded by the macos dynamic loader. </p>
 </blockquote>
 <h3><a class="anchor" id="autotoc_md9"></a>
 source for developers</h3>
@@ -208,7 +201,7 @@ Currently, known good platforms</h3>
 <li>Ubuntu 22.04 (X86_64)</li>
 </ul>
 <blockquote class="doxtable">
-<p><b>Note:</b> On Ubuntu 22.04 the user needs to install boost libraries manually as the versions in the Ubuntu repositories are too old. The installer automatically detects this and will instruct the user in how to do this. </p>
+<p>&zwj;<b>Note:</b> On Ubuntu 22.04 the user needs to install boost libraries manually as the versions in the Ubuntu repositories are too old. The installer automatically detects this and will instruct the user in how to do this. </p>
 </blockquote>
 <h2><a class="anchor" id="autotoc_md14"></a>
 Manual Build Instructions</h2>
@@ -233,13 +226,13 @@ Optional</h4>
 <li>pip (used by the <code>install.sh</code> script or by calling pip directly, not needed if using meson directly)</li>
 </ul>
 <blockquote class="doxtable">
-<p><b>Note:</b> Boost is the only external library dependency used by GridFire directly. </p>
+<p>&zwj;<b>Note:</b> Boost is the only external library dependency used by GridFire directly. </p>
 </blockquote>
 <blockquote class="doxtable">
-<p><b>Note:</b> Windows is not supported at this time and <em>there are no plans to support it in the future</em>. Windows users are encouraged to use WSL2 or a Linux VM. </p>
+<p>&zwj;<b>Note:</b> Windows is not supported at this time and <em>there are no plans to support it in the future</em>. Windows users are encouraged to use WSL2 or a Linux VM. </p>
 </blockquote>
 <blockquote class="doxtable">
-<p><b>Note:</b> If <code>install-tui.sh</code> is not able to find a usable version of boost it will provide directions to fetch, compile, and install a usable version. </p>
+<p>&zwj;<b>Note:</b> If <code>install-tui.sh</code> is not able to find a usable version of boost it will provide directions to fetch, compile, and install a usable version. </p>
 </blockquote>
 <h3><a class="anchor" id="autotoc_md18"></a>
 Install Scripts</h3>
@@ -252,23 +245,20 @@ Reproducibility</h4>
 <p>The TUI mode provides easy modification of meson build system and compiler settings which can then be saved to a config file. This config file can then be loaded by either tui mode or cli mode (with the <code>--config</code>) flag meaning that build configurations can be made and reused. Note that this is <b>not</b> a deterministically reproducible build system as it does not interact with any system dependencies or settings, only meson and compiler settings.</p>
 <h4><a class="anchor" id="autotoc_md21"></a>
 Examples</h4>
-<h5><a class="anchor" id="autotoc_md22"></a>
-TUI config and saving</h5>
+<p><a class="anchor" id="autotoc_md22"></a> </p><h5>TUI config and saving</h5>
 <p><a href="https://asciinema.org/a/ahIrQPL71ErZv5EKKujfO1ZEW"><img src="https://asciinema.org/a/ahIrQPL71ErZv5EKKujfO1ZEW.svg" alt="asciicast" style="pointer-events: none;" class="inline"/></a></p>
-<h5><a class="anchor" id="autotoc_md23"></a>
-TUI config loading and meson setup</h5>
+<p><a class="anchor" id="autotoc_md23"></a> </p><h5>TUI config loading and meson setup</h5>
 <p><a href="https://asciinema.org/a/zGdzt9kYsETltG0TJKC50g3BK"><img src="https://asciinema.org/a/zGdzt9kYsETltG0TJKC50g3BK.svg" alt="asciicast" style="pointer-events: none;" class="inline"/></a></p>
-<h5><a class="anchor" id="autotoc_md24"></a>
-CLI config loading, setup, and build</h5>
+<p><a class="anchor" id="autotoc_md24"></a> </p><h5>CLI config loading, setup, and build</h5>
 <p><a href="https://asciinema.org/a/GYaWTXZbDJRD4ohde0s3DkFMC"><img src="https://asciinema.org/a/GYaWTXZbDJRD4ohde0s3DkFMC.svg" alt="asciicast" style="pointer-events: none;" class="inline"/></a></p>
 <blockquote class="doxtable">
-<p><b>Note:</b> <code>install-tui.sh</code> is simply a script which calls <code>install.sh</code> with the <code>--tui</code> flag. You can get the exact same results by running <code>install.sh --tui</code>. </p>
+<p>&zwj;<b>Note:</b> <code>install-tui.sh</code> is simply a script which calls <code>install.sh</code> with the <code>--tui</code> flag. You can get the exact same results by running <code>install.sh --tui</code>. </p>
 </blockquote>
 <blockquote class="doxtable">
-<p><b>Note:</b> Call <code>install.sh</code> with the <code>--help</code> or <code>--h</code> flag to see command line options </p>
+<p>&zwj;<b>Note:</b> Call <code>install.sh</code> with the <code>--help</code> or <code>--h</code> flag to see command line options </p>
 </blockquote>
 <blockquote class="doxtable">
-<p><b>Note:</b> <code>clang</code> tends to compile GridFire much faster than <code>gcc</code> thus why I select it in the above asciinema recording. </p>
+<p>&zwj;<b>Note:</b> <code>clang</code> tends to compile GridFire much faster than <code>gcc</code> thus why I select it in the above asciinema recording. </p>
 </blockquote>
 <h3><a class="anchor" id="autotoc_md25"></a>
 Dependency Installation on Common Platforms</h3>
@@ -278,10 +268,10 @@ Dependency Installation on Common Platforms</h3>
 </div><!-- fragment --></li>
 </ul>
 <blockquote class="doxtable">
-<p><b>Note:</b> Depending on the ubuntu version you have the libboost-all-dev libraries may be too old. If this is the case refer to the boost documentation for how to download and install a version <code>&gt;=1.83.0</code> </p>
+<p>&zwj;<b>Note:</b> Depending on the ubuntu version you have the libboost-all-dev libraries may be too old. If this is the case refer to the boost documentation for how to download and install a version <code>&gt;=1.83.0</code> </p>
 </blockquote>
 <blockquote class="doxtable">
-<p><b>Note:</b> On recent versions of ubuntu python has switched to being externally managed by the system. We <b>strongly</b> recommend that if you install manually all python packages are installed inside some kind of virtual environment (e.g. <code>pyenv</code>, <code>conda</code>, <code>python-venv</code>, etc...). When using the installer script this is handled automatically using <code>python-venv</code>. </p>
+<p>&zwj;<b>Note:</b> On recent versions of ubuntu python has switched to being externally managed by the system. We <b>strongly</b> recommend that if you install manually all python packages are installed inside some kind of virtual environment (e.g. <code>pyenv</code>, <code>conda</code>, <code>python-venv</code>, etc...). When using the installer script this is handled automatically using <code>python-venv</code>. </p>
 </blockquote>
 <ul>
 <li><b>Fedora/CentOS/RHEL:</b> <div class="fragment"><div class="line">sudo dnf install -y gcc-c++ meson python3 python3-pip boost-devel</div>
@@ -453,7 +443,8 @@ Usage Examples</h1>
 C++</h2>
 <h3><a class="anchor" id="autotoc_md48"></a>
 GraphEngine Initialization</h3>
-<div class="fragment"><div class="line"><span class="preprocessor">#include &quot;<a class="code" href="engine__graph_8h.html">gridfire/engine/engine_graph.h</a>&quot;</span></div>
+<div class="fragment"><div class="line"> ++</div>
+<div class="line"><span class="preprocessor">#include &quot;<a class="code" href="engine__graph_8h.html">gridfire/engine/engine_graph.h</a>&quot;</span></div>
 <div class="line"><span class="preprocessor">#include &quot;fourdst/composition/composition.h&quot;</span></div>
 <div class="line"> </div>
 <div class="line"><span class="keywordtype">int</span> main(){</div>
@@ -464,7 +455,8 @@ GraphEngine Initialization</h3>
 <div class="ttc" id="aengine__graph_8h_html"><div class="ttname"><a href="engine__graph_8h.html">engine_graph.h</a></div></div>
 </div><!-- fragment --><h3><a class="anchor" id="autotoc_md49"></a>
 Adaptive Network View</h3>
-<div class="fragment"><div class="line"><span class="preprocessor">#include &quot;<a class="code" href="engine__adaptive_8h.html">gridfire/engine/views/engine_adaptive.h</a>&quot;</span></div>
+<div class="fragment"><div class="line"> ++</div>
+<div class="line"><span class="preprocessor">#include &quot;<a class="code" href="engine__adaptive_8h.html">gridfire/engine/views/engine_adaptive.h</a>&quot;</span></div>
 <div class="line"><span class="preprocessor">#include &quot;<a class="code" href="engine__graph_8h.html">gridfire/engine/engine_graph.h</a>&quot;</span></div>
 <div class="line"> </div>
 <div class="line"><span class="keywordtype">int</span> main(){</div>
@@ -476,7 +468,8 @@ Adaptive Network View</h3>
 <div class="ttc" id="aengine__adaptive_8h_html"><div class="ttname"><a href="engine__adaptive_8h.html">engine_adaptive.h</a></div></div>
 </div><!-- fragment --><h3><a class="anchor" id="autotoc_md50"></a>
 Composition Initialization</h3>
-<div class="fragment"><div class="line"><span class="preprocessor">#include &quot;fourdst/composition/composition.h&quot;</span></div>
+<div class="fragment"><div class="line"> ++</div>
+<div class="line"><span class="preprocessor">#include &quot;fourdst/composition/composition.h&quot;</span></div>
 <div class="line"><span class="preprocessor">#include &quot;fourdst/composition/utils.h&quot;</span> <span class="comment">// for buildCompositionFromMassFractions</span></div>
 <div class="line"><span class="preprocessor">#include &lt;vector&gt;</span></div>
 <div class="line"><span class="preprocessor">#include &lt;string&gt;</span></div>
@@ -495,7 +488,8 @@ Composition Initialization</h3>
 </div><!-- fragment --><h3><a class="anchor" id="autotoc_md51"></a>
 Common Workflow Example</h3>
 <p>A representative workflow often composes multiple engine views to balance accuracy, stability, and performance when integrating stiff nuclear networks:</p>
-<div class="fragment"><div class="line"><span class="preprocessor">#include &quot;<a class="code" href="gridfire_8h.html">gridfire/gridfire.h</a>&quot;</span> <span class="comment">// Unified header for real usage</span></div>
+<div class="fragment"><div class="line"> ++</div>
+<div class="line"><span class="preprocessor">#include &quot;<a class="code" href="gridfire_8h.html">gridfire/gridfire.h</a>&quot;</span> <span class="comment">// Unified header for real usage</span></div>
 <div class="line"> </div>
 <div class="line"><span class="preprocessor">#include &quot;fourdst/composition/composition.h&quot;</span></div>
 <div class="line"><span class="preprocessor">#include &quot;fourdst/composition/utils.h&quot;</span> <span class="comment">// for buildCompositionFromMassFractions</span></div>
@@ -542,7 +536,8 @@ Common Workflow Example</h3>
 </div><!-- fragment --><h3><a class="anchor" id="autotoc_md52"></a>
 Callback and Policy Example</h3>
 <p>Custom callback functions can be registered with any solver. Because it might make sense for each solver to provide different context to the callback function, you should use the struct <code><a class="el" href="namespacegridfire_1_1solver.html">gridfire::solver</a>::&lt;SolverName&gt;::TimestepContext</code> as the argument type for the callback function. This struct contains all the information provided by that solver to the callback function.</p>
-<div class="fragment"><div class="line"><span class="preprocessor">#include &quot;<a class="code" href="gridfire_8h.html">gridfire/gridfire.h</a>&quot;</span> <span class="comment">// Unified header for real usage</span></div>
+<div class="fragment"><div class="line"> ++</div>
+<div class="line"><span class="preprocessor">#include &quot;<a class="code" href="gridfire_8h.html">gridfire/gridfire.h</a>&quot;</span> <span class="comment">// Unified header for real usage</span></div>
 <div class="line"> </div>
 <div class="line"><span class="preprocessor">#include &quot;fourdst/composition/composition.h&quot;</span> <span class="comment">// for Composition</span></div>
 <div class="line"><span class="preprocessor">#include &quot;fourdst/composition/utils.h&quot;</span> <span class="comment">// for buildCompositionFromMassFractions</span></div>
@@ -550,11 +545,11 @@ Callback and Policy Example</h3>
 <div class="line"> </div>
 <div class="line"><span class="preprocessor">#include &lt;iostream&gt;</span></div>
 <div class="line"> </div>
-<div class="line"><span class="keywordtype">void</span> callback(<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a>&amp; context) {</div>
-<div class="line">    <span class="keywordtype">int</span> H1Index = context.<a class="code hl_variable" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a5a457651dcb9d4a66ed219ddf7095313">engine</a>.<a class="code hl_function" href="classgridfire_1_1engine_1_1_dynamic_engine.html#ac0f40017603e8e6887b75dc7360d7c5e">getSpeciesIndex</a>(fourdst::atomic::H_1);</div>
-<div class="line">    <span class="keywordtype">int</span> He4Index = context.<a class="code hl_variable" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a5a457651dcb9d4a66ed219ddf7095313">engine</a>.<a class="code hl_function" href="classgridfire_1_1engine_1_1_dynamic_engine.html#ac0f40017603e8e6887b75dc7360d7c5e">getSpeciesIndex</a>(fourdst::atomic::He_4);</div>
+<div class="line"><span class="keywordtype">void</span> callback(<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a>&amp; context) {</div>
+<div class="line">    <span class="keywordtype">int</span> H1Index = context.<a class="code hl_variable" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a5a457651dcb9d4a66ed219ddf7095313">engine</a>.<a class="code hl_function" href="classgridfire_1_1engine_1_1DynamicEngine.html#ac0f40017603e8e6887b75dc7360d7c5e">getSpeciesIndex</a>(fourdst::atomic::H_1);</div>
+<div class="line">    <span class="keywordtype">int</span> He4Index = context.<a class="code hl_variable" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a5a457651dcb9d4a66ed219ddf7095313">engine</a>.<a class="code hl_function" href="classgridfire_1_1engine_1_1DynamicEngine.html#ac0f40017603e8e6887b75dc7360d7c5e">getSpeciesIndex</a>(fourdst::atomic::He_4);</div>
 <div class="line"> </div>
-<div class="line">    std::cout &lt;&lt; context.<a class="code hl_variable" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a0b39f0d207181840efacb64417b492ae">t</a> &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; context.<a class="code hl_variable" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#aaae3c42b9172be4d501f022e67f5a6f6">state</a>(H1Index) &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; context.<a class="code hl_variable" href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#aaae3c42b9172be4d501f022e67f5a6f6">state</a>(He4Index) &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div>
+<div class="line">    std::cout &lt;&lt; context.<a class="code hl_variable" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a0b39f0d207181840efacb64417b492ae">t</a> &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; context.<a class="code hl_variable" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#aaae3c42b9172be4d501f022e67f5a6f6">state</a>(H1Index) &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; context.<a class="code hl_variable" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#aaae3c42b9172be4d501f022e67f5a6f6">state</a>(He4Index) &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div>
 <div class="line">}</div>
 <div class="line"> </div>
 <div class="line"><span class="keywordtype">int</span> main(){</div>
@@ -563,14 +558,14 @@ Callback and Policy Example</h3>
 <div class="line"> </div>
 <div class="line"> </div>
 <div class="line">    <span class="keyword">const</span> fourdst::composition::Composition composition = fourdst::composition::buildCompositionFromMassFractions(symbols, X);</div>
-<div class="line">    <a class="code hl_class" href="classgridfire_1_1policy_1_1_main_sequence_policy.html">gridfire::policy::MainSequencePolicy</a> stellarPolicy(netIn.composition);</div>
-<div class="line">    <a class="code hl_class" href="classgridfire_1_1engine_1_1_dynamic_engine.html">gridfire::engine::DynamicEngine</a>&amp; engine = stellarPolicy.construct();</div>
+<div class="line">    <a class="code hl_class" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a> stellarPolicy(netIn.composition);</div>
+<div class="line">    <a class="code hl_class" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a>&amp; engine = stellarPolicy.construct();</div>
 <div class="line">    </div>
-<div class="line">    <a class="code hl_class" href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a> solver(adaptView);</div>
+<div class="line">    <a class="code hl_class" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a> solver(adaptView);</div>
 <div class="line">    solver.set_callback(callback);</div>
 <div class="line"> </div>
 <div class="line">    <span class="comment">// 6. Prepare input conditions</span></div>
-<div class="line">    <a class="code hl_struct" href="structgridfire_1_1_net_in.html">gridfire::NetIn</a> input{</div>
+<div class="line">    <a class="code hl_struct" href="structgridfire_1_1NetIn.html">gridfire::NetIn</a> input{</div>
 <div class="line">        comp,     <span class="comment">// composition</span></div>
 <div class="line">        1.5e7,      <span class="comment">// temperature [K]</span></div>
 <div class="line">        1.5e2,      <span class="comment">// density [g/cm^3]</span></div>
@@ -579,44 +574,45 @@ Callback and Policy Example</h3>
 <div class="line">    };</div>
 <div class="line"> </div>
 <div class="line">    <span class="comment">// 7. Execute integration</span></div>
-<div class="line">    <a class="code hl_struct" href="structgridfire_1_1_net_out.html">gridfire::NetOut</a> output = solver.evaluate(input);</div>
+<div class="line">    <a class="code hl_struct" href="structgridfire_1_1NetOut.html">gridfire::NetOut</a> output = solver.evaluate(input);</div>
 <div class="line">    std::cout &lt;&lt; <span class="stringliteral">&quot;Final results are: &quot;</span> &lt;&lt; output &lt;&lt; std::endl;</div>
 <div class="line">}</div>
-<div class="ttc" id="aclassgridfire_1_1engine_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1engine_1_1_dynamic_engine.html">gridfire::engine::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> engine_abstract.h:175</div></div>
-<div class="ttc" id="aclassgridfire_1_1engine_1_1_dynamic_engine_html_ac0f40017603e8e6887b75dc7360d7c5e"><div class="ttname"><a href="classgridfire_1_1engine_1_1_dynamic_engine.html#ac0f40017603e8e6887b75dc7360d7c5e">gridfire::engine::DynamicEngine::getSpeciesIndex</a></div><div class="ttdeci">virtual size_t getSpeciesIndex(const fourdst::atomic::Species &amp;species) const =0</div><div class="ttdoc">Get the index of a species in the network.</div></div>
-<div class="ttc" id="aclassgridfire_1_1policy_1_1_main_sequence_policy_html"><div class="ttname"><a href="classgridfire_1_1policy_1_1_main_sequence_policy.html">gridfire::policy::MainSequencePolicy</a></div><div class="ttdoc">A NetworkPolicy for building reaction networks suitable for low-mass main-sequence stars.</div><div class="ttdef"><b>Definition</b> stellar_policy.h:60</div></div>
-<div class="ttc" id="aclassgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_html"><div class="ttname"><a href="classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html">gridfire::solver::CVODESolverStrategy</a></div><div class="ttdoc">Stiff ODE integrator backed by SUNDIALS CVODE (BDF) for network + energy.</div><div class="ttdef"><b>Definition</b> CVODE_solver_strategy.h:81</div></div>
-<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> types.h:27</div></div>
-<div class="ttc" id="astructgridfire_1_1_net_out_html"><div class="ttname"><a href="structgridfire_1_1_net_out.html">gridfire::NetOut</a></div><div class="ttdef"><b>Definition</b> types.h:37</div></div>
-<div class="ttc" id="astructgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context_html"><div class="ttname"><a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></div><div class="ttdoc">Immutable view of the current integration state passed to callbacks.</div><div class="ttdef"><b>Definition</b> CVODE_solver_strategy.h:173</div></div>
-<div class="ttc" id="astructgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context_html_a0b39f0d207181840efacb64417b492ae"><div class="ttname"><a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a0b39f0d207181840efacb64417b492ae">gridfire::solver::CVODESolverStrategy::TimestepContext::t</a></div><div class="ttdeci">const double t</div><div class="ttdoc">Current integration time [s].</div><div class="ttdef"><b>Definition</b> CVODE_solver_strategy.h:175</div></div>
-<div class="ttc" id="astructgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context_html_a5a457651dcb9d4a66ed219ddf7095313"><div class="ttname"><a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#a5a457651dcb9d4a66ed219ddf7095313">gridfire::solver::CVODESolverStrategy::TimestepContext::engine</a></div><div class="ttdeci">const engine::DynamicEngine &amp; engine</div><div class="ttdoc">Reference to the engine.</div><div class="ttdef"><b>Definition</b> CVODE_solver_strategy.h:182</div></div>
-<div class="ttc" id="astructgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context_html_aaae3c42b9172be4d501f022e67f5a6f6"><div class="ttname"><a href="structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#aaae3c42b9172be4d501f022e67f5a6f6">gridfire::solver::CVODESolverStrategy::TimestepContext::state</a></div><div class="ttdeci">const N_Vector &amp; state</div><div class="ttdoc">Current CVODE state vector (N_Vector).</div><div class="ttdef"><b>Definition</b> CVODE_solver_strategy.h:176</div></div>
+<div class="ttc" id="aclassgridfire_1_1engine_1_1DynamicEngine_html"><div class="ttname"><a href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> engine_abstract.h:175</div></div>
+<div class="ttc" id="aclassgridfire_1_1engine_1_1DynamicEngine_html_ac0f40017603e8e6887b75dc7360d7c5e"><div class="ttname"><a href="classgridfire_1_1engine_1_1DynamicEngine.html#ac0f40017603e8e6887b75dc7360d7c5e">gridfire::engine::DynamicEngine::getSpeciesIndex</a></div><div class="ttdeci">virtual size_t getSpeciesIndex(const fourdst::atomic::Species &amp;species) const =0</div><div class="ttdoc">Get the index of a species in the network.</div></div>
+<div class="ttc" id="aclassgridfire_1_1policy_1_1MainSequencePolicy_html"><div class="ttname"><a href="classgridfire_1_1policy_1_1MainSequencePolicy.html">gridfire::policy::MainSequencePolicy</a></div><div class="ttdoc">A NetworkPolicy for building reaction networks suitable for low-mass main-sequence stars.</div><div class="ttdef"><b>Definition</b> stellar_policy.h:60</div></div>
+<div class="ttc" id="aclassgridfire_1_1solver_1_1CVODESolverStrategy_html"><div class="ttname"><a href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">gridfire::solver::CVODESolverStrategy</a></div><div class="ttdoc">Stiff ODE integrator backed by SUNDIALS CVODE (BDF) for network + energy.</div><div class="ttdef"><b>Definition</b> CVODE_solver_strategy.h:81</div></div>
+<div class="ttc" id="astructgridfire_1_1NetIn_html"><div class="ttname"><a href="structgridfire_1_1NetIn.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> types.h:27</div></div>
+<div class="ttc" id="astructgridfire_1_1NetOut_html"><div class="ttname"><a href="structgridfire_1_1NetOut.html">gridfire::NetOut</a></div><div class="ttdef"><b>Definition</b> types.h:37</div></div>
+<div class="ttc" id="astructgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext_html"><div class="ttname"><a href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></div><div class="ttdoc">Immutable view of the current integration state passed to callbacks.</div><div class="ttdef"><b>Definition</b> CVODE_solver_strategy.h:173</div></div>
+<div class="ttc" id="astructgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext_html_a0b39f0d207181840efacb64417b492ae"><div class="ttname"><a href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a0b39f0d207181840efacb64417b492ae">gridfire::solver::CVODESolverStrategy::TimestepContext::t</a></div><div class="ttdeci">const double t</div><div class="ttdoc">Current integration time [s].</div><div class="ttdef"><b>Definition</b> CVODE_solver_strategy.h:175</div></div>
+<div class="ttc" id="astructgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext_html_a5a457651dcb9d4a66ed219ddf7095313"><div class="ttname"><a href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a5a457651dcb9d4a66ed219ddf7095313">gridfire::solver::CVODESolverStrategy::TimestepContext::engine</a></div><div class="ttdeci">const engine::DynamicEngine &amp; engine</div><div class="ttdoc">Reference to the engine.</div><div class="ttdef"><b>Definition</b> CVODE_solver_strategy.h:182</div></div>
+<div class="ttc" id="astructgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext_html_aaae3c42b9172be4d501f022e67f5a6f6"><div class="ttname"><a href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#aaae3c42b9172be4d501f022e67f5a6f6">gridfire::solver::CVODESolverStrategy::TimestepContext::state</a></div><div class="ttdeci">const N_Vector &amp; state</div><div class="ttdoc">Current CVODE state vector (N_Vector).</div><div class="ttdef"><b>Definition</b> CVODE_solver_strategy.h:176</div></div>
 </div><!-- fragment --><p> &gt;<b>Note:</b> If you want to see exactly why each repartitioning stage was triggered in a human readable manner add the flag True to <code>solver.evaluate</code> (<code>solver.evaluate(input, true)</code>).</p>
 <p>&gt;<b>Note:</b> A fully detailed list of all available information in the TimestepContext struct is available in the API documentation.</p>
 <p>&gt;<b>Note:</b> The order of species in the boost state vector (<code>ctx.state</code>) is <b>not guaranteed</b> to be any particular order run over run. Therefore, in order to reliably extract </p><blockquote class="doxtable">
-<p>values from it, you <b>must</b> use the <code>getSpeciesIndex</code> method of the engine to get the index of the species you are interested in (these will always be in the same order). </p>
+<p>&zwj;values from it, you <b>must</b> use the <code>getSpeciesIndex</code> method of the engine to get the index of the species you are interested in (these will always be in the same order). </p>
 </blockquote>
 <p>If you wish to know what is provided by a solver context without investigating the code you can simply do</p>
-<div class="fragment"><div class="line"><span class="keywordtype">void</span> callback(<span class="keyword">const</span> <a class="code hl_struct" href="classgridfire_1_1solver_1_1_solver_context_base.html">gridfire::solver::SolverContextBase</a>&amp; context) {</div>
-<div class="line">    <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>&amp; [parameterName, description] : context.<a class="code hl_function" href="classgridfire_1_1solver_1_1_solver_context_base.html#a9cbef3cabc8524e542613ee50d8860c6">describe</a>()) {</div>
+<div class="fragment"><div class="line"> ++</div>
+<div class="line"><span class="keywordtype">void</span> callback(<span class="keyword">const</span> <a class="code hl_struct" href="classgridfire_1_1solver_1_1SolverContextBase.html">gridfire::solver::SolverContextBase</a>&amp; context) {</div>
+<div class="line">    <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>&amp; [parameterName, description] : context.describe()) {</div>
 <div class="line">        std::cout &lt;&lt; parameterName &lt;&lt; <span class="stringliteral">&quot;: &quot;</span> &lt;&lt; description &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div>
 <div class="line">    }</div>
 <div class="line">    std::cout &lt;&lt; std::flush();</div>
 <div class="line">    exit(0);</div>
 <div class="line">}</div>
-<div class="ttc" id="aclassgridfire_1_1solver_1_1_solver_context_base_html"><div class="ttname"><a href="classgridfire_1_1solver_1_1_solver_context_base.html">gridfire::solver::SolverContextBase</a></div><div class="ttdoc">Base class for solver callback contexts.</div><div class="ttdef"><b>Definition</b> strategy_abstract.h:21</div></div>
-<div class="ttc" id="aclassgridfire_1_1solver_1_1_solver_context_base_html_a9cbef3cabc8524e542613ee50d8860c6"><div class="ttname"><a href="classgridfire_1_1solver_1_1_solver_context_base.html#a9cbef3cabc8524e542613ee50d8860c6">gridfire::solver::SolverContextBase::describe</a></div><div class="ttdeci">virtual std::vector&lt; std::tuple&lt; std::string, std::string &gt; &gt; describe() const =0</div><div class="ttdoc">Describe the context for callback functions.</div></div>
+<div class="ttc" id="aclassgridfire_1_1solver_1_1SolverContextBase_html"><div class="ttname"><a href="classgridfire_1_1solver_1_1SolverContextBase.html">gridfire::solver::SolverContextBase</a></div><div class="ttdoc">Base class for solver callback contexts.</div><div class="ttdef"><b>Definition</b> strategy_abstract.h:21</div></div>
 </div><!-- fragment --><p>If you set this as the callback (to any solver strategy) it will print out the available parameters and what they are and then close the code. This is useful when writing new callbacks.</p>
 <h4><a class="anchor" id="autotoc_md53"></a>
 Callback Context</h4>
 <p>Since each solver may provide different context to the callback function, and it may be frustrating to refer to the documentation every time, we also enforce that all solvers must implement a <code>descripe_callback_context</code> method which returns a vector of tuples&lt;string, string&gt; where the first element is the name of the field and the second is its datatype. It is on the developer to ensure that this information is accurate.</p>
-<div class="fragment"><div class="line">...</div>
+<div class="fragment"><div class="line"> ++</div>
+<div class="line">...</div>
 <div class="line">std::cout &lt;&lt; solver.describe_callback_context() &lt;&lt; std::endl;</div>
 </div><!-- fragment --><h2><a class="anchor" id="autotoc_md54"></a>
 Python</h2>
 <p>The python bindings intentionally look <b>very</b> similar to the C++ code. Generally all examples can be adapted to python by replacing includes of paths with imports of modules such that</p>
-<p><code>#include "gridfire/engine/GraphEngine.h"</code> becomes <code>import <a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html" title="A reaction network engine that uses a graph-based representation.">gridfire.engine.GraphEngine</a></code></p>
+<p><code>#include "gridfire/engine/GraphEngine.h"</code> becomes <code>import <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html" title="A reaction network engine that uses a graph-based representation.">gridfire.engine.GraphEngine</a></code></p>
 <p>All GridFire C++ types have been bound and can be passed around as one would expect.</p>
 <h3><a class="anchor" id="autotoc_md55"></a>
 Python Example for End Users</h3>
@@ -726,17 +722,15 @@ Python Example for End Users</h3>
 External Usage</h1>
 <p>C++ does not have a stable ABI nor does it make any strong guarantees about stl container layouts between compiler versions. Therefore, GridFire includes a set of stable C bindings which can be used to interface with a limited subset of GridFire functionality from other languages.</p>
 <blockquote class="doxtable">
-<p><b>Note:</b> These bindings are not intended to allow GridFire to be extended from other languages; rather, they are intended to allow GridFire to be used as a black-box library from other languages. </p>
+<p>&zwj;<b>Note:</b> These bindings are not intended to allow GridFire to be extended from other languages; rather, they are intended to allow GridFire to be used as a black-box library from other languages. </p>
 </blockquote>
 <blockquote class="doxtable">
-<p><b>Note:</b> One assumption for external usage is that the ordering of the species list will not change. That is to say that whatever order the array used to register the species is will be assumed to always be the order used when passing abundance arrays to and from GridFire. </p>
+<p>&zwj;<b>Note:</b> One assumption for external usage is that the ordering of the species list will not change. That is to say that whatever order the array used to register the species is will be assumed to always be the order used when passing abundance arrays to and from GridFire. </p>
 </blockquote>
 <blockquote class="doxtable">
-<p><b>Note:</b> Because the C API does not pass the general Composition object a <code>mass_lost</code> output parameter has been added to the evolve calls, this tracks the total mass in species which have not been registered with the C API GridFire by the caller </p>
+<p>&zwj;<b>Note:</b> Because the C API does not pass the general Composition object a <code>mass_lost</code> output parameter has been added to the evolve calls, this tracks the total mass in species which have not been registered with the C API GridFire by the caller </p>
 </blockquote>
-<h2><a class="anchor" id="autotoc_md57"></a>
-C API Overview</h2>
-<p>In general when using the C API the workflow is to </p>
+<p>## C API Overview In general when using the C API the workflow is to</p>
 <ol type="1">
 <li>create a <code>gf_context</code> pointer. This object holds the state of GridFire so that it does not need to be re-initialized for each call.</li>
 <li>call initialization routines on the context to set up the engine and solver you wish to use.</li>
@@ -744,9 +738,10 @@ C API Overview</h2>
 <li>At each state check the ret code of the function to ensure that no errors occurred. Valid ret-codes are 0 and 1. All other ret codes indicate an error.</li>
 <li>Finally, call <code>gf_free</code> to free the context and all associated memory.</li>
 </ol>
-<h3><a class="anchor" id="autotoc_md58"></a>
+<h3><a class="anchor" id="autotoc_md57"></a>
 C Example</h3>
-<div class="fragment"><div class="line"><span class="preprocessor">#include &quot;<a class="code" href="gridfire__extern_8h.html">gridfire/extern/gridfire_extern.h</a>&quot;</span></div>
+<div class="fragment"><div class="line"> ++</div>
+<div class="line"><span class="preprocessor">#include &quot;<a class="code" href="gridfire__extern_8h.html">gridfire/extern/gridfire_extern.h</a>&quot;</span></div>
 <div class="line"><span class="preprocessor">#include &lt;stdio.h&gt;</span></div>
 <div class="line"> </div>
 <div class="line"><span class="preprocessor">#define NUM_SPECIES 8</span></div>
@@ -831,7 +826,7 @@ C Example</h3>
 <div class="ttc" id="agridfire__extern_8h_html_abde0ca38a62727d2f76f0bcd920bf124"><div class="ttname"><a href="gridfire__extern_8h.html#abde0ca38a62727d2f76f0bcd920bf124">gf_evolve</a></div><div class="ttdeci">int gf_evolve(void *ptr, const double *Y_in, size_t num_species, double T, double rho, double tMax, double dt0, double *Y_out, double *energy_out, double *dEps_dT, double *dEps_dRho, double *specific_neutrino_energy_loss, double *specific_neutrino_flux, double *mass_lost)</div><div class="ttdef"><b>Definition</b> gridfire_extern.cpp:87</div></div>
 <div class="ttc" id="agridfire__extern_8h_html_ae70b23310adcce0925900ca00a18a4a6"><div class="ttname"><a href="gridfire__extern_8h.html#ae70b23310adcce0925900ca00a18a4a6">gf_construct_engine_from_policy</a></div><div class="ttdeci">int gf_construct_engine_from_policy(void *ptr, const char *policy_name, const double *abundances, size_t num_species)</div><div class="ttdef"><b>Definition</b> gridfire_extern.cpp:39</div></div>
 <div class="ttc" id="agridfire__extern_8h_html_af7e09bf5cf979211260e715faaa3a680"><div class="ttname"><a href="gridfire__extern_8h.html#af7e09bf5cf979211260e715faaa3a680">gf_register_species</a></div><div class="ttdeci">int gf_register_species(void *ptr, const int num_species, const char **species_names)</div><div class="ttdef"><b>Definition</b> gridfire_extern.cpp:15</div></div>
-</div><!-- fragment --><h2><a class="anchor" id="autotoc_md59"></a>
+</div><!-- fragment --><h2><a class="anchor" id="autotoc_md58"></a>
 Fortran API Overview</h2>
 <p>GridFire makes use of the stable C API and Fortran 2003's <code>iso_c_bindings</code> to provide a Fortran interface for legacy code. The fortran interface is designed to be very similar to the C API and exposes the same functionality.</p>
 <ol type="1">
@@ -844,13 +839,13 @@ Fortran API Overview</h2>
 <li><code>GridFiregff_free</code>: Frees the GridFire context and associated resources.</li>
 </ol>
 <blockquote class="doxtable">
-<p><b>Note:</b> You must instantiate a <code>GridFire</code> type object to access these methods. </p>
+<p>&zwj;<b>Note:</b> You must instantiate a <code>GridFire</code> type object to access these methods. </p>
 </blockquote>
 <blockquote class="doxtable">
-<p><b>Note:</b> free and init have had the <code>gff_</code> prefix (GridFire Fortran) to avoid name clashes with common Fortran functions. </p>
+<p>&zwj;<b>Note:</b> free and init have had the <code>gff_</code> prefix (GridFire Fortran) to avoid name clashes with common Fortran functions. </p>
 </blockquote>
 <p>When building GridFire a fortran module file <code>gridfire_mod.mod</code> is generated which contains all the necessary bindings to use GridFire from Fortran. You must also link your code against the C API library <code>libgridfire_extern</code>.</p>
-<h3><a class="anchor" id="autotoc_md60"></a>
+<h3><a class="anchor" id="autotoc_md59"></a>
 Fortran Example</h3>
 <div class="fragment"><div class="line"><span class="keyword">program</span> main</div>
 <div class="line">    <span class="keywordtype">use </span>iso_c_binding</div>
@@ -942,7 +937,7 @@ Fortran Example</h3>
 <div class="line"> </div>
 <div class="line"><span class="keyword">end program </span>main</div>
 <div class="ttc" id="anamespacegridfire__mod_html"><div class="ttname"><a href="namespacegridfire__mod.html">gridfire_mod</a></div><div class="ttdef"><b>Definition</b> gridfire_mod.f90:1</div></div>
-</div><!-- fragment --><h1><a class="anchor" id="autotoc_md61"></a>
+</div><!-- fragment --><h1><a class="anchor" id="autotoc_md60"></a>
 Related Projects</h1>
 <p>GridFire integrates with and builds upon several key 4D-STAR libraries:</p>
 <ul>
@@ -954,13 +949,12 @@ Related Projects</h1>
 <li><a href="https://github.com/4D-STAR/libplugin">libplugin</a>: Dynamically loadable plugin framework. </li>
 </ul>
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diff --git a/docs/html/inherit_graph_56.map b/docs/html/inherit_graph_56.map
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diff --git a/docs/html/inherit_graph_65.map b/docs/html/inherit_graph_65.map
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diff --git a/docs/html/inherit_graph_9.md5 b/docs/html/inherit_graph_9.md5
index 07c854f4..8ae6763e 100644
--- a/docs/html/inherit_graph_9.md5
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index 9e7871c3..0bd48722 100644
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index 2c7e1c09..2afcf2f2 100644
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+<meta name="generator" content="Doxygen 1.9.8"/>
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 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
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+<script type="text/javascript" src="resize.js"></script>
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  <tbody>
  <tr id="projectrow">
   <td id="projectalign">
-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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   </td>
@@ -38,24 +36,19 @@
 </table>
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+$(document).ready(function(){initNavTree('hierarchy.html',''); initResizable(); });
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-          <td class="paramtype">type(c_ptr), value</td>          <td class="paramname"><span class="paramname"><em>ptr</em></span>, </td>
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+          <td class="paramtype">real(c_double), intent(out)&#160;</td>
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+          <td class="paramname"><em>mass_lost</em>&#160;</td>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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-  $(function() { init_search(); });
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n=C.setTimeout(e,r);t.stop=function(){C.clearTimeout(n)}})},tt=E.createElement("input"),nt=E.createElement("select").appendChild(E.createElement("option")),tt.type="checkbox",y.checkOn=""!==tt.value,y.optSelected=nt.selected,(tt=E.createElement("input")).value="t",tt.type="radio",y.radioValue="t"===tt.value;var ct,ft=S.expr.attrHandle;S.fn.extend({attr:function(e,t){return $(this,S.attr,e,t,1<arguments.length)},removeAttr:function(e){return this.each(function(){S.removeAttr(this,e)})}}),S.extend({attr:function(e,t,n){var r,i,o=e.nodeType;if(3!==o&&8!==o&&2!==o)return"undefined"==typeof e.getAttribute?S.prop(e,t,n):(1===o&&S.isXMLDoc(e)||(i=S.attrHooks[t.toLowerCase()]||(S.expr.match.bool.test(t)?ct:void 0)),void 0!==n?null===n?void S.removeAttr(e,t):i&&"set"in i&&void 0!==(r=i.set(e,n,t))?r:(e.setAttribute(t,n+""),n):i&&"get"in i&&null!==(r=i.get(e,t))?r:null==(r=S.find.attr(e,t))?void 0:r)},attrHooks:{type:{set:function(e,t){if(!y.radioValue&&"radio"===t&&A(e,"input")){var 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e=g.left-l.left,i=e+c-a,s=g.top-l.top,n=s+f-r,o={target:{element:_,left:g.left,top:g.top,width:c,height:f},element:{element:h,left:l.left,top:l.top,width:a,height:r},horizontal:i<0?"left":0<e?"right":"center",vertical:n<0?"top":0<s?"bottom":"middle"};c<a&&D(e+i)<c&&(o.horizontal="center"),f<r&&D(s+n)<f&&(o.vertical="middle"),x(D(e),D(i))>x(D(s),D(n))?o.important="horizontal":o.important="vertical",p.using.call(this,t,o)}),h.offset(y.extend(l,{using:t}))})},y.ui.position={fit:{left:function(t,e){var i=e.within,s=i.isWindow?i.scrollLeft:i.offset.left,n=i.width,o=t.left-e.collisionPosition.marginLeft,h=s-o,a=o+e.collisionWidth-n-s;e.collisionWidth>n?0<h&&a<=0?(i=t.left+h+e.collisionWidth-n-s,t.left+=h-i):t.left=!(0<a&&h<=0)&&a<h?s+n-e.collisionWidth:s:0<h?t.left+=h:0<a?t.left-=a:t.left=x(t.left-o,t.left)},top:function(t,e){var i=e.within,s=i.isWindow?i.scrollTop:i.offset.top,n=e.within.height,o=t.top-e.collisionPosition.marginTop,h=s-o,a=o+e.collisionHeight-n-s;e.collisionHeight>n?0<h&&a<=0?(i=t.top+h+e.collisionHeight-n-s,t.top+=h-i):t.top=!(0<a&&h<=0)&&a<h?s+n-e.collisionHeight:s:0<h?t.top+=h:0<a?t.top-=a:t.top=x(t.top-o,t.top)}},flip:{left:function(t,e){var i=e.within,s=i.offset.left+i.scrollLeft,n=i.width,o=i.isWindow?i.scrollLeft:i.offset.left,h=t.left-e.collisionPosition.marginLeft,a=h-o,r=h+e.collisionWidth-n-o,l="left"===e.my[0]?-e.elemWidth:"right"===e.my[0]?e.elemWidth:0,i="left"===e.at[0]?e.targetWidth:"right"===e.at[0]?-e.targetWidth:0,h=-2*e.offset[0];a<0?((s=t.left+l+i+h+e.collisionWidth-n-s)<0||s<D(a))&&(t.left+=l+i+h):0<r&&(0<(o=t.left-e.collisionPosition.marginLeft+l+i+h-o)||D(o)<r)&&(t.left+=l+i+h)},top:function(t,e){var i=e.within,s=i.offset.top+i.scrollTop,n=i.height,o=i.isWindow?i.scrollTop:i.offset.top,h=t.top-e.collisionPosition.marginTop,a=h-o,r=h+e.collisionHeight-n-o,l="top"===e.my[1]?-e.elemHeight:"bottom"===e.my[1]?e.elemHeight:0,i="top"===e.at[1]?e.targetHeight:"bottom"===e.at[1]?-e.targetHeight:0,h=-2*e.offset[1];a<0?((s=t.top+l+i+h+e.collisionHeight-n-s)<0||s<D(a))&&(t.top+=l+i+h):0<r&&(0<(o=t.top-e.collisionPosition.marginTop+l+i+h-o)||D(o)<r)&&(t.top+=l+i+h)}},flipfit:{left:function(){y.ui.position.flip.left.apply(this,arguments),y.ui.position.fit.left.apply(this,arguments)},top:function(){y.ui.position.flip.top.apply(this,arguments),y.ui.position.fit.top.apply(this,arguments)}}};var t;y.ui.position,y.extend(y.expr.pseudos,{data:y.expr.createPseudo?y.expr.createPseudo(function(e){return function(t){return!!y.data(t,e)}}):function(t,e,i){return!!y.data(t,i[3])}}),y.fn.extend({disableSelection:(t="onselectstart"in document.createElement("div")?"selectstart":"mousedown",function(){return 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t=e.data("ui-form-reset-instances");y.each(t,function(){this.refresh()})})},_bindFormResetHandler:function(){var t;this.form=this.element._form(),this.form.length&&((t=this.form.data("ui-form-reset-instances")||[]).length||this.form.on("reset.ui-form-reset",this._formResetHandler),t.push(this),this.form.data("ui-form-reset-instances",t))},_unbindFormResetHandler:function(){var t;this.form.length&&((t=this.form.data("ui-form-reset-instances")).splice(y.inArray(this,t),1),t.length?this.form.data("ui-form-reset-instances",t):this.form.removeData("ui-form-reset-instances").off("reset.ui-form-reset"))}};y.expr.pseudos||(y.expr.pseudos=y.expr[":"]),y.uniqueSort||(y.uniqueSort=y.unique),y.escapeSelector||(e=/([\0-\x1f\x7f]|^-?\d)|^-$|[^\x80-\uFFFF\w-]/g,d=function(t,e){return e?"\0"===t?"�":t.slice(0,-1)+"\\"+t.charCodeAt(t.length-1).toString(16)+" ":"\\"+t},y.escapeSelector=function(t){return(t+"").replace(e,d)}),y.fn.even&&y.fn.odd||y.fn.extend({even:function(){return 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y.removeData(t.target,e.widgetName+".preventClickEvent"),t.stopImmediatePropagation(),!1}),this.started=!1},_mouseDestroy:function(){this.element.off("."+this.widgetName),this._mouseMoveDelegate&&this.document.off("mousemove."+this.widgetName,this._mouseMoveDelegate).off("mouseup."+this.widgetName,this._mouseUpDelegate)},_mouseDown:function(t){if(!f){this._mouseMoved=!1,this._mouseStarted&&this._mouseUp(t),this._mouseDownEvent=t;var e=this,i=1===t.which,s=!("string"!=typeof this.options.cancel||!t.target.nodeName)&&y(t.target).closest(this.options.cancel).length;return i&&!s&&this._mouseCapture(t)?(this.mouseDelayMet=!this.options.delay,this.mouseDelayMet||(this._mouseDelayTimer=setTimeout(function(){e.mouseDelayMet=!0},this.options.delay)),this._mouseDistanceMet(t)&&this._mouseDelayMet(t)&&(this._mouseStarted=!1!==this._mouseStart(t),!this._mouseStarted)?(t.preventDefault(),!0):(!0===y.data(t.target,this.widgetName+".preventClickEvent")&&y.removeData(t.target,this.widgetName+".preventClickEvent"),this._mouseMoveDelegate=function(t){return e._mouseMove(t)},this._mouseUpDelegate=function(t){return e._mouseUp(t)},this.document.on("mousemove."+this.widgetName,this._mouseMoveDelegate).on("mouseup."+this.widgetName,this._mouseUpDelegate),t.preventDefault(),f=!0)):!0}},_mouseMove:function(t){if(this._mouseMoved){if(y.ui.ie&&(!document.documentMode||document.documentMode<9)&&!t.button)return this._mouseUp(t);if(!t.which)if(t.originalEvent.altKey||t.originalEvent.ctrlKey||t.originalEvent.metaKey||t.originalEvent.shiftKey)this.ignoreMissingWhich=!0;else 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t,e,i,s,n,o=this.options,h=this;if(this.handles=o.handles||(y(".ui-resizable-handle",this.element).length?{n:".ui-resizable-n",e:".ui-resizable-e",s:".ui-resizable-s",w:".ui-resizable-w",se:".ui-resizable-se",sw:".ui-resizable-sw",ne:".ui-resizable-ne",nw:".ui-resizable-nw"}:"e,s,se"),this._handles=y(),this._addedHandles=y(),this.handles.constructor===String)for("all"===this.handles&&(this.handles="n,e,s,w,se,sw,ne,nw"),i=this.handles.split(","),this.handles={},e=0;e<i.length;e++)s="ui-resizable-"+(t=String.prototype.trim.call(i[e])),n=y("<div>"),this._addClass(n,"ui-resizable-handle "+s),n.css({zIndex:o.zIndex}),this.handles[t]=".ui-resizable-"+t,this.element.children(this.handles[t]).length||(this.element.append(n),this._addedHandles=this._addedHandles.add(n));this._renderAxis=function(t){var e,i,s;for(e in 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e,i,s=!1;for(e in this.handles)(i=y(this.handles[e])[0])!==t.target&&!y.contains(i,t.target)||(s=!0);return!this.options.disabled&&s},_mouseStart:function(t){var e,i,s=this.options,n=this.element;return this.resizing=!0,this._renderProxy(),e=this._num(this.helper.css("left")),i=this._num(this.helper.css("top")),s.containment&&(e+=y(s.containment).scrollLeft()||0,i+=y(s.containment).scrollTop()||0),this.offset=this.helper.offset(),this.position={left:e,top:i},this.size=this._helper?{width:this.helper.width(),height:this.helper.height()}:{width:n.width(),height:n.height()},this.originalSize=this._helper?{width:n.outerWidth(),height:n.outerHeight()}:{width:n.width(),height:n.height()},this.sizeDiff={width:n.outerWidth()-n.width(),height:n.outerHeight()-n.height()},this.originalPosition={left:e,top:i},this.originalMousePosition={left:t.pageX,top:t.pageY},this.aspectRatio="number"==typeof 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this._helper&&(s=(e=(i=this._proportionallyResizeElements).length&&/textarea/i.test(i[0].nodeName))&&this._hasScroll(i[0],"left")?0:o.sizeDiff.height,i=e?0:o.sizeDiff.width,e={width:o.helper.width()-i,height:o.helper.height()-s},i=parseFloat(o.element.css("left"))+(o.position.left-o.originalPosition.left)||null,s=parseFloat(o.element.css("top"))+(o.position.top-o.originalPosition.top)||null,n.animate||this.element.css(y.extend(e,{top:s,left:i})),o.helper.height(o.size.height),o.helper.width(o.size.width),this._helper&&!n.animate&&this._proportionallyResize()),y("body").css("cursor","auto"),this._removeClass("ui-resizable-resizing"),this._propagate("stop",t),this._helper&&this.helper.remove(),!1},_updatePrevProperties:function(){this.prevPosition={top:this.position.top,left:this.position.left},this.prevSize={width:this.size.width,height:this.size.height}},_applyChanges:function(){var t={};return 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cancelTimer(stopClose){hoverTimer=clearTimeout(hoverTimer);if(session.closeDelayTimeout&&myCloseDelay===session.closeDelayTimeout||stopClose){cancelClose()}}function cancelClose(){session.closeDelayTimeout=clearTimeout(session.closeDelayTimeout);session.delayInProgress=false}function closeAnyDelayed(){if(session.delayInProgress&&session.activeHover&&!session.activeHover.is(element)){session.activeHover.data(DATA_DISPLAYCONTROLLER).hide(true)}}function repositionTooltip(){tipController.resetPosition(element)}this.show=openTooltip;this.hide=closeTooltip;this.cancel=cancelTimer;this.resetPosition=repositionTooltip}function PlacementCalculator(){function computePlacementCoords(element,placement,tipWidth,tipHeight,offset){var placementBase=placement.split("-")[0],coords=new CSSCoordinates,position;if(isSvgElement(element)){position=getSvgPlacement(element,placementBase)}else{position=getHtmlPlacement(element,placementBase)}switch(placement){case"n":coords.set("left",position.left-tipWidth/2);coords.set("bottom",session.windowHeight-position.top+offset);break;case"e":coords.set("left",position.left+offset);coords.set("top",position.top-tipHeight/2);break;case"s":coords.set("left",position.left-tipWidth/2);coords.set("top",position.top+offset);break;case"w":coords.set("top",position.top-tipHeight/2);coords.set("right",session.windowWidth-position.left+offset);break;case"nw":coords.set("bottom",session.windowHeight-position.top+offset);coords.set("right",session.windowWidth-position.left-20);break;case"nw-alt":coords.set("left",position.left);coords.set("bottom",session.windowHeight-position.top+offset);break;case"ne":coords.set("left",position.left-20);coords.set("bottom",session.windowHeight-position.top+offset);break;case"ne-alt":coords.set("bottom",session.windowHeight-position.top+offset);coords.set("right",session.windowWidth-position.left);break;case"sw":coords.set("top",position.top+offset);coords.set("right",session.windowWidth-position.left-20);break;case"sw-alt":coords.set("left",position.left);coords.set("top",position.top+offset);break;case"se":coords.set("left",position.left-20);coords.set("top",position.top+offset);break;case"se-alt":coords.set("top",position.top+offset);coords.set("right",session.windowWidth-position.left);break}return coords}function getHtmlPlacement(element,placement){var objectOffset=element.offset(),objectWidth=element.outerWidth(),objectHeight=element.outerHeight(),left,top;switch(placement){case"n":left=objectOffset.left+objectWidth/2;top=objectOffset.top;break;case"e":left=objectOffset.left+objectWidth;top=objectOffset.top+objectHeight/2;break;case"s":left=objectOffset.left+objectWidth/2;top=objectOffset.top+objectHeight;break;case"w":left=objectOffset.left;top=objectOffset.top+objectHeight/2;break;case"nw":left=objectOffset.left;top=objectOffset.top;break;case"ne":left=objectOffset.left+objectWidth;top=objectOffset.top;break;case"sw":left=objectOffset.left;top=objectOffset.top+objectHeight;break;case"se":left=objectOffset.left+objectWidth;top=objectOffset.top+objectHeight;break}return{top:top,left:left}}function getSvgPlacement(element,placement){var svgElement=element.closest("svg")[0],domElement=element[0],point=svgElement.createSVGPoint(),boundingBox=domElement.getBBox(),matrix=domElement.getScreenCTM(),halfWidth=boundingBox.width/2,halfHeight=boundingBox.height/2,placements=[],placementKeys=["nw","n","ne","e","se","s","sw","w"],coords,rotation,steps,x;function pushPlacement(){placements.push(point.matrixTransform(matrix))}point.x=boundingBox.x;point.y=boundingBox.y;pushPlacement();point.x+=halfWidth;pushPlacement();point.x+=halfWidth;pushPlacement();point.y+=halfHeight;pushPlacement();point.y+=halfHeight;pushPlacement();point.x-=halfWidth;pushPlacement();point.x-=halfWidth;pushPlacement();point.y-=halfHeight;pushPlacement();if(placements[0].y!==placements[1].y||placements[0].x!==placements[7].x){rotation=Math.atan2(matrix.b,matrix.a)*RAD2DEG;steps=Math.ceil((rotation%360-22.5)/45);if(steps<1){steps+=8}while(steps--){placementKeys.push(placementKeys.shift())}}for(x=0;x<placements.length;x++){if(placementKeys[x]===placement){coords=placements[x];break}}return{top:coords.y+session.scrollTop,left:coords.x+session.scrollLeft}}this.compute=computePlacementCoords}function TooltipController(options){var placementCalculator=new PlacementCalculator,tipElement=$("#"+options.popupId);if(tipElement.length===0){tipElement=$("<div/>",{id:options.popupId});if($body.length===0){$body=$("body")}$body.append(tipElement);session.tooltips=session.tooltips?session.tooltips.add(tipElement):tipElement}if(options.followMouse){if(!tipElement.data(DATA_HASMOUSEMOVE)){$document.on("mousemove"+EVENT_NAMESPACE,positionTipOnCursor);$window.on("scroll"+EVENT_NAMESPACE,positionTipOnCursor);tipElement.data(DATA_HASMOUSEMOVE,true)}}function beginShowTip(element){element.data(DATA_HASACTIVEHOVER,true);tipElement.queue(function queueTipInit(next){showTip(element);next()})}function showTip(element){var tipContent;if(!element.data(DATA_HASACTIVEHOVER)){return}if(session.isTipOpen){if(!session.isClosing){hideTip(session.activeHover)}tipElement.delay(100).queue(function queueTipAgain(next){showTip(element);next()});return}element.trigger("powerTipPreRender");tipContent=getTooltipContent(element);if(tipContent){tipElement.empty().append(tipContent)}else{return}element.trigger("powerTipRender");session.activeHover=element;session.isTipOpen=true;tipElement.data(DATA_MOUSEONTOTIP,options.mouseOnToPopup);tipElement.addClass(options.popupClass);if(!options.followMouse||element.data(DATA_FORCEDOPEN)){positionTipOnElement(element);session.isFixedTipOpen=true}else{positionTipOnCursor()}if(!element.data(DATA_FORCEDOPEN)&&!options.followMouse){$document.on("click"+EVENT_NAMESPACE,function documentClick(event){var target=event.target;if(target!==element[0]){if(options.mouseOnToPopup){if(target!==tipElement[0]&&!$.contains(tipElement[0],target)){$.powerTip.hide()}}else{$.powerTip.hide()}}})}if(options.mouseOnToPopup&&!options.manual){tipElement.on("mouseenter"+EVENT_NAMESPACE,function tipMouseEnter(){if(session.activeHover){session.activeHover.data(DATA_DISPLAYCONTROLLER).cancel()}});tipElement.on("mouseleave"+EVENT_NAMESPACE,function tipMouseLeave(){if(session.activeHover){session.activeHover.data(DATA_DISPLAYCONTROLLER).hide()}})}tipElement.fadeIn(options.fadeInTime,function fadeInCallback(){if(!session.desyncTimeout){session.desyncTimeout=setInterval(closeDesyncedTip,500)}element.trigger("powerTipOpen")})}function hideTip(element){session.isClosing=true;session.isTipOpen=false;session.desyncTimeout=clearInterval(session.desyncTimeout);element.data(DATA_HASACTIVEHOVER,false);element.data(DATA_FORCEDOPEN,false);$document.off("click"+EVENT_NAMESPACE);tipElement.off(EVENT_NAMESPACE);tipElement.fadeOut(options.fadeOutTime,function fadeOutCallback(){var coords=new CSSCoordinates;session.activeHover=null;session.isClosing=false;session.isFixedTipOpen=false;tipElement.removeClass();coords.set("top",session.currentY+options.offset);coords.set("left",session.currentX+options.offset);tipElement.css(coords);element.trigger("powerTipClose")})}function positionTipOnCursor(){var tipWidth,tipHeight,coords,collisions,collisionCount;if(!session.isFixedTipOpen&&(session.isTipOpen||session.tipOpenImminent&&tipElement.data(DATA_HASMOUSEMOVE))){tipWidth=tipElement.outerWidth();tipHeight=tipElement.outerHeight();coords=new CSSCoordinates;coords.set("top",session.currentY+options.offset);coords.set("left",session.currentX+options.offset);collisions=getViewportCollisions(coords,tipWidth,tipHeight);if(collisions!==Collision.none){collisionCount=countFlags(collisions);if(collisionCount===1){if(collisions===Collision.right){coords.set("left",session.scrollLeft+session.windowWidth-tipWidth)}else if(collisions===Collision.bottom){coords.set("top",session.scrollTop+session.windowHeight-tipHeight)}}else{coords.set("left",session.currentX-tipWidth-options.offset);coords.set("top",session.currentY-tipHeight-options.offset)}}tipElement.css(coords)}}function positionTipOnElement(element){var priorityList,finalPlacement;if(options.smartPlacement||options.followMouse&&element.data(DATA_FORCEDOPEN)){priorityList=$.fn.powerTip.smartPlacementLists[options.placement];$.each(priorityList,function(idx,pos){var collisions=getViewportCollisions(placeTooltip(element,pos),tipElement.outerWidth(),tipElement.outerHeight());finalPlacement=pos;return collisions!==Collision.none})}else{placeTooltip(element,options.placement);finalPlacement=options.placement}tipElement.removeClass("w nw sw e ne se n s w se-alt sw-alt ne-alt nw-alt");tipElement.addClass(finalPlacement)}function placeTooltip(element,placement){var iterationCount=0,tipWidth,tipHeight,coords=new CSSCoordinates;coords.set("top",0);coords.set("left",0);tipElement.css(coords);do{tipWidth=tipElement.outerWidth();tipHeight=tipElement.outerHeight();coords=placementCalculator.compute(element,placement,tipWidth,tipHeight,options.offset);tipElement.css(coords)}while(++iterationCount<=5&&(tipWidth!==tipElement.outerWidth()||tipHeight!==tipElement.outerHeight()));return coords}function closeDesyncedTip(){var isDesynced=false,hasDesyncableCloseEvent=$.grep(["mouseleave","mouseout","blur","focusout"],function(eventType){return $.inArray(eventType,options.closeEvents)!==-1}).length>0;if(session.isTipOpen&&!session.isClosing&&!session.delayInProgress&&hasDesyncableCloseEvent){if(session.activeHover.data(DATA_HASACTIVEHOVER)===false||session.activeHover.is(":disabled")){isDesynced=true}else if(!isMouseOver(session.activeHover)&&!session.activeHover.is(":focus")&&!session.activeHover.data(DATA_FORCEDOPEN)){if(tipElement.data(DATA_MOUSEONTOTIP)){if(!isMouseOver(tipElement)){isDesynced=true}}else{isDesynced=true}}if(isDesynced){hideTip(session.activeHover)}}}this.showTip=beginShowTip;this.hideTip=hideTip;this.resetPosition=positionTipOnElement}function isSvgElement(element){return Boolean(window.SVGElement&&element[0]instanceof SVGElement)}function isMouseEvent(event){return Boolean(event&&$.inArray(event.type,MOUSE_EVENTS)>-1&&typeof event.pageX==="number")}function initTracking(){if(!session.mouseTrackingActive){session.mouseTrackingActive=true;getViewportDimensions();$(getViewportDimensions);$document.on("mousemove"+EVENT_NAMESPACE,trackMouse);$window.on("resize"+EVENT_NAMESPACE,trackResize);$window.on("scroll"+EVENT_NAMESPACE,trackScroll)}}function getViewportDimensions(){session.scrollLeft=$window.scrollLeft();session.scrollTop=$window.scrollTop();session.windowWidth=$window.width();session.windowHeight=$window.height()}function trackResize(){session.windowWidth=$window.width();session.windowHeight=$window.height()}function trackScroll(){var x=$window.scrollLeft(),y=$window.scrollTop();if(x!==session.scrollLeft){session.currentX+=x-session.scrollLeft;session.scrollLeft=x}if(y!==session.scrollTop){session.currentY+=y-session.scrollTop;session.scrollTop=y}}function trackMouse(event){session.currentX=event.pageX;session.currentY=event.pageY}function isMouseOver(element){var elementPosition=element.offset(),elementBox=element[0].getBoundingClientRect(),elementWidth=elementBox.right-elementBox.left,elementHeight=elementBox.bottom-elementBox.top;return session.currentX>=elementPosition.left&&session.currentX<=elementPosition.left+elementWidth&&session.currentY>=elementPosition.top&&session.currentY<=elementPosition.top+elementHeight}function getTooltipContent(element){var tipText=element.data(DATA_POWERTIP),tipObject=element.data(DATA_POWERTIPJQ),tipTarget=element.data(DATA_POWERTIPTARGET),targetElement,content;if(tipText){if($.isFunction(tipText)){tipText=tipText.call(element[0])}content=tipText}else if(tipObject){if($.isFunction(tipObject)){tipObject=tipObject.call(element[0])}if(tipObject.length>0){content=tipObject.clone(true,true)}}else if(tipTarget){targetElement=$("#"+tipTarget);if(targetElement.length>0){content=targetElement.html()}}return content}function getViewportCollisions(coords,elementWidth,elementHeight){var viewportTop=session.scrollTop,viewportLeft=session.scrollLeft,viewportBottom=viewportTop+session.windowHeight,viewportRight=viewportLeft+session.windowWidth,collisions=Collision.none;if(coords.top<viewportTop||Math.abs(coords.bottom-session.windowHeight)-elementHeight<viewportTop){collisions|=Collision.top}if(coords.top+elementHeight>viewportBottom||Math.abs(coords.bottom-session.windowHeight)>viewportBottom){collisions|=Collision.bottom}if(coords.left<viewportLeft||coords.right+elementWidth>viewportRight){collisions|=Collision.left}if(coords.left+elementWidth>viewportRight||coords.right<viewportLeft){collisions|=Collision.right}return collisions}function countFlags(value){var count=0;while(value){value&=value-1;count++}return count}return $.powerTip});/*!
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  *
  * Copyright 2011–2014, Dave Furfero
@@ -173,32 +28,7 @@ viewportRight=viewportLeft+session.windowWidth,collisions=Collision.none;if(coor
  * Depends:
  *  jquery.ui.widget.js
  *  jquery.ui.mouse.js
- */!function(a){function f(a,b){if(!(a.originalEvent.touches.length>1)){a.preventDefault();var c=a.originalEvent.changedTouches[0],d=document.createEvent("MouseEvents");d.initMouseEvent(b,!0,!0,window,1,c.screenX,c.screenY,c.clientX,c.clientY,!1,!1,!1,!1,0,null),a.target.dispatchEvent(d)}}if(a.support.touch="ontouchend"in document,a.support.touch){var e,b=a.ui.mouse.prototype,c=b._mouseInit,d=b._mouseDestroy;b._touchStart=function(a){var b=this;!e&&b._mouseCapture(a.originalEvent.changedTouches[0])&&(e=!0,b._touchMoved=!1,f(a,"mouseover"),f(a,"mousemove"),f(a,"mousedown"))},b._touchMove=function(a){e&&(this._touchMoved=!0,f(a,"mousemove"))},b._touchEnd=function(a){e&&(f(a,"mouseup"),f(a,"mouseout"),this._touchMoved||f(a,"click"),e=!1)},b._mouseInit=function(){var b=this;b.element.bind({touchstart:a.proxy(b,"_touchStart"),touchmove:a.proxy(b,"_touchMove"),touchend:a.proxy(b,"_touchEnd")}),c.call(b)},b._mouseDestroy=function(){var b=this;b.element.unbind({touchstart:a.proxy(b,"_touchStart"),touchmove:a.proxy(b,
-"_touchMove"),touchend:a.proxy(b,"_touchEnd")}),d.call(b)}}}(jQuery);
-/*! SmartMenus jQuery Plugin - v1.1.0 - September 17, 2017
+ */
+!function(a){function f(a,b){if(!(a.originalEvent.touches.length>1)){a.preventDefault();var c=a.originalEvent.changedTouches[0],d=document.createEvent("MouseEvents");d.initMouseEvent(b,!0,!0,window,1,c.screenX,c.screenY,c.clientX,c.clientY,!1,!1,!1,!1,0,null),a.target.dispatchEvent(d)}}if(a.support.touch="ontouchend"in document,a.support.touch){var e,b=a.ui.mouse.prototype,c=b._mouseInit,d=b._mouseDestroy;b._touchStart=function(a){var b=this;!e&&b._mouseCapture(a.originalEvent.changedTouches[0])&&(e=!0,b._touchMoved=!1,f(a,"mouseover"),f(a,"mousemove"),f(a,"mousedown"))},b._touchMove=function(a){e&&(this._touchMoved=!0,f(a,"mousemove"))},b._touchEnd=function(a){e&&(f(a,"mouseup"),f(a,"mouseout"),this._touchMoved||f(a,"click"),e=!1)},b._mouseInit=function(){var b=this;b.element.bind({touchstart:a.proxy(b,"_touchStart"),touchmove:a.proxy(b,"_touchMove"),touchend:a.proxy(b,"_touchEnd")}),c.call(b)},b._mouseDestroy=function(){var b=this;b.element.unbind({touchstart:a.proxy(b,"_touchStart"),touchmove:a.proxy(b,"_touchMove"),touchend:a.proxy(b,"_touchEnd")}),d.call(b)}}}(jQuery);/*! SmartMenus jQuery Plugin - v1.1.0 - September 17, 2017
  * http://www.smartmenus.org/
- * Copyright Vasil Dinkov, Vadikom Web Ltd. http://vadikom.com; Licensed MIT */(function(t){"function"==typeof define&&define.amd?define(["jquery"],t):"object"==typeof module&&"object"==typeof module.exports?module.exports=t(require("jquery")):t(jQuery)})(function($){function initMouseDetection(t){var e=".smartmenus_mouse";if(mouseDetectionEnabled||t)mouseDetectionEnabled&&t&&($(document).off(e),mouseDetectionEnabled=!1);else{var i=!0,s=null,o={mousemove:function(t){var e={x:t.pageX,y:t.pageY,timeStamp:(new Date).getTime()};if(s){var o=Math.abs(s.x-e.x),a=Math.abs(s.y-e.y);if((o>0||a>0)&&2>=o&&2>=a&&300>=e.timeStamp-s.timeStamp&&(mouse=!0,i)){var n=$(t.target).closest("a");n.is("a")&&$.each(menuTrees,function(){return $.contains(this.$root[0],n[0])?(this.itemEnter({currentTarget:n[0]}),!1):void 0}),i=!1}}s=e}};o[touchEvents?"touchstart":"pointerover pointermove pointerout MSPointerOver MSPointerMove MSPointerOut"]=function(t){isTouchEvent(t.originalEvent)&&(mouse=!1)},$(document).on(getEventsNS(o,e)),
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-this.docTouchStart,this),touchmove:$.proxy(this.docTouchMove,this),touchend:$.proxy(this.docTouchEnd,this),click:$.proxy(this.docClick,this)},i)),$(window).on(getEventsNS({"resize orientationchange":$.proxy(this.winResize,this)},i)),this.opts.subIndicators&&(this.$subArrow=$("<span/>").addClass("sub-arrow"),this.opts.subIndicatorsText&&this.$subArrow.html(this.opts.subIndicatorsText)),initMouseDetection()}if(this.$firstSub=this.$root.find("ul").each(function(){e.menuInit($(this))}).eq(0),this.$firstLink=this.$root.find("a").eq(0),this.opts.markCurrentItem){var s=/(index|default)\.[^#\?\/]*/i,o=/#.*/,a=window.location.href.replace(s,""),n=a.replace(o,"");this.$root.find("a").each(function(){var t=this.href.replace(s,""),i=$(this);(t==a||t==n)&&(i.addClass("current"),e.opts.markCurrentTree&&i.parentsUntil("[data-smartmenus-id]","ul").each(function(){$(this).dataSM("parent-a").addClass("current")}))})}this.wasCollapsible=this.isCollapsible()},destroy:function(t){if(!t){var e=".smartmenus";this.$root.removeData(
-"smartmenus").removeAttr("data-smartmenus-id").removeDataSM("level").off(e),e+=this.rootId,$(document).off(e),$(window).off(e),this.opts.subIndicators&&(this.$subArrow=null)}this.menuHideAll();var i=this;this.$root.find("ul").each(function(){var t=$(this);t.dataSM("scroll-arrows")&&t.dataSM("scroll-arrows").remove(),t.dataSM("shown-before")&&((i.opts.subMenusMinWidth||i.opts.subMenusMaxWidth)&&t.css({width:"",minWidth:"",maxWidth:""}).removeClass("sm-nowrap"),t.dataSM("scroll-arrows")&&t.dataSM("scroll-arrows").remove(),t.css({zIndex:"",top:"",left:"",marginLeft:"",marginTop:"",display:""})),0==(t.attr("id")||"").indexOf(i.accessIdPrefix)&&t.removeAttr("id")}).removeDataSM("in-mega").removeDataSM("shown-before").removeDataSM("scroll-arrows").removeDataSM("parent-a").removeDataSM("level").removeDataSM("beforefirstshowfired").removeAttr("role").removeAttr("aria-hidden").removeAttr("aria-labelledby").removeAttr("aria-expanded"),this.$root.find("a.has-submenu").each(function(){var t=$(this);0==t.attr("id"
-).indexOf(i.accessIdPrefix)&&t.removeAttr("id")}).removeClass("has-submenu").removeDataSM("sub").removeAttr("aria-haspopup").removeAttr("aria-controls").removeAttr("aria-expanded").closest("li").removeDataSM("sub"),this.opts.subIndicators&&this.$root.find("span.sub-arrow").remove(),this.opts.markCurrentItem&&this.$root.find("a.current").removeClass("current"),t||(this.$root=null,this.$firstLink=null,this.$firstSub=null,this.$disableOverlay&&(this.$disableOverlay.remove(),this.$disableOverlay=null),menuTrees.splice($.inArray(this,menuTrees),1))},disable:function(t){if(!this.disabled){if(this.menuHideAll(),!t&&!this.opts.isPopup&&this.$root.is(":visible")){var e=this.$root.offset();this.$disableOverlay=$('<div class="sm-jquery-disable-overlay"/>').css({position:"absolute",top:e.top,left:e.left,width:this.$root.outerWidth(),height:this.$root.outerHeight(),zIndex:this.getStartZIndex(!0),opacity:0}).appendTo(document.body)}this.disabled=!0}},docClick:function(t){return this.$touchScrollingSub?(
-this.$touchScrollingSub=null,void 0):((this.visibleSubMenus.length&&!$.contains(this.$root[0],t.target)||$(t.target).closest("a").length)&&this.menuHideAll(),void 0)},docTouchEnd:function(){if(this.lastTouch){if(!(!this.visibleSubMenus.length||void 0!==this.lastTouch.x2&&this.lastTouch.x1!=this.lastTouch.x2||void 0!==this.lastTouch.y2&&this.lastTouch.y1!=this.lastTouch.y2||this.lastTouch.target&&$.contains(this.$root[0],this.lastTouch.target))){this.hideTimeout&&(clearTimeout(this.hideTimeout),this.hideTimeout=0);var t=this;this.hideTimeout=setTimeout(function(){t.menuHideAll()},350)}this.lastTouch=null}},docTouchMove:function(t){if(this.lastTouch){var e=t.originalEvent.touches[0];this.lastTouch.x2=e.pageX,this.lastTouch.y2=e.pageY}},docTouchStart:function(t){var e=t.originalEvent.touches[0];this.lastTouch={x1:e.pageX,y1:e.pageY,target:e.target}},enable:function(){this.disabled&&(this.$disableOverlay&&(this.$disableOverlay.remove(),this.$disableOverlay=null),this.disabled=!1)},getClosestMenu:function(t){for(
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-"highlighted").attr("aria-expanded","false"),t.attr({"aria-expanded":"false","aria-hidden":"true"});var i=t.dataSM("level");this.activatedItems.splice(i-1,1),this.visibleSubMenus.splice($.inArray(t,this.visibleSubMenus),1),this.$root.triggerHandler("hide.smapi",t[0])}},menuHideAll:function(){this.showTimeout&&(clearTimeout(this.showTimeout),this.showTimeout=0);for(var t=this.opts.isPopup?1:0,e=this.visibleSubMenus.length-1;e>=t;e--)this.menuHide(this.visibleSubMenus[e]);this.opts.isPopup&&(canAnimate&&this.$root.stop(!0,!0),this.$root.is(":visible")&&(canAnimate&&this.opts.hideFunction?this.opts.hideFunction.call(this,this.$root):this.$root.hide(this.opts.hideDuration))),this.activatedItems=[],this.visibleSubMenus=[],this.clickActivated=!1,this.focusActivated=!1,this.zIndexInc=0,this.$root.triggerHandler("hideAll.smapi")},menuHideSubMenus:function(t){for(var e=this.activatedItems.length-1;e>=t;e--){var i=this.activatedItems[e].dataSM("sub");i&&this.menuHide(i)}},menuInit:function(t){if(!t.dataSM("in-mega")){
-t.hasClass("mega-menu")&&t.find("ul").dataSM("in-mega",!0);for(var e=2,i=t[0];(i=i.parentNode.parentNode)!=this.$root[0];)e++;var s=t.prevAll("a").eq(-1);s.length||(s=t.prevAll().find("a").eq(-1)),s.addClass("has-submenu").dataSM("sub",t),t.dataSM("parent-a",s).dataSM("level",e).parent().dataSM("sub",t);var o=s.attr("id")||this.accessIdPrefix+ ++this.idInc,a=t.attr("id")||this.accessIdPrefix+ ++this.idInc;s.attr({id:o,"aria-haspopup":"true","aria-controls":a,"aria-expanded":"false"}),t.attr({id:a,role:"group","aria-hidden":"true","aria-labelledby":o,"aria-expanded":"false"}),this.opts.subIndicators&&s[this.opts.subIndicatorsPos](this.$subArrow.clone())}},menuPosition:function(t){var e,i,s=t.dataSM("parent-a"),o=s.closest("li"),a=o.parent(),n=t.dataSM("level"),r=this.getWidth(t),h=this.getHeight(t),u=s.offset(),l=u.left,c=u.top,d=this.getWidth(s),m=this.getHeight(s),p=$(window),f=p.scrollLeft(),v=p.scrollTop(),b=this.getViewportWidth(),S=this.getViewportHeight(),g=a.parent().is("[data-sm-horizontal-sub]"
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-a=t.dataSM("scroll-arrows"),n=o.up?o.upEnd:o.downEnd;if(!e&&o.momentum){if(o.momentum*=.92,s=o.momentum,.5>s)return this.menuScrollStop(t),void 0}else s=i||(e||!this.opts.scrollAccelerate?this.opts.scrollStep:Math.floor(o.step));var r=t.dataSM("level");if(this.activatedItems[r-1]&&this.activatedItems[r-1].dataSM("sub")&&this.activatedItems[r-1].dataSM("sub").is(":visible")&&this.menuHideSubMenus(r-1),o.y=o.up&&o.y>=n||!o.up&&n>=o.y?o.y:Math.abs(n-o.y)>s?o.y+(o.up?s:-s):n,t.css(this.cssTransforms3d?{"-webkit-transform":"translate3d(0, "+o.y+"px, 0)",transform:"translate3d(0, "+o.y+"px, 0)"}:{marginTop:o.y}),mouse&&(o.up&&o.y>o.downEnd||!o.up&&o.y<o.upEnd)&&a.eq(o.up?1:0).show(),o.y==n)mouse&&a.eq(o.up?0:1).hide(),this.menuScrollStop(t);else if(!e){this.opts.scrollAccelerate&&o.step<this.opts.scrollStep&&(o.step+=.2);var h=this;this.scrollTimeout=requestAnimationFrame(function(){h.menuScroll(t)})}},menuScrollMousewheel:function(t,e){if(this.getClosestMenu(e.target)==t[0]){e=e.originalEvent;var i=(
-e.wheelDelta||-e.detail)>0;t.dataSM("scroll-arrows").eq(i?0:1).is(":visible")&&(t.dataSM("scroll").up=i,this.menuScroll(t,!0))}e.preventDefault()},menuScrollOut:function(t,e){mouse&&(/^scroll-(up|down)/.test((e.relatedTarget||"").className)||(t[0]==e.relatedTarget||$.contains(t[0],e.relatedTarget))&&this.getClosestMenu(e.relatedTarget)==t[0]||t.dataSM("scroll-arrows").css("visibility","hidden"))},menuScrollOver:function(t,e){if(mouse&&!/^scroll-(up|down)/.test(e.target.className)&&this.getClosestMenu(e.target)==t[0]){this.menuScrollRefreshData(t);var i=t.dataSM("scroll"),s=$(window).scrollTop()-t.dataSM("parent-a").offset().top-i.itemH;t.dataSM("scroll-arrows").eq(0).css("margin-top",s).end().eq(1).css("margin-top",s+this.getViewportHeight()-i.arrowDownH).end().css("visibility","visible")}},menuScrollRefreshData:function(t){var e=t.dataSM("scroll"),i=$(window).scrollTop()-t.dataSM("parent-a").offset().top-e.itemH;this.cssTransforms3d&&(i=-(parseFloat(t.css("margin-top"))-i)),$.extend(e,{upEnd:i,
-downEnd:i+this.getViewportHeight()-e.subH})},menuScrollStop:function(t){return this.scrollTimeout?(cancelAnimationFrame(this.scrollTimeout),this.scrollTimeout=0,t.dataSM("scroll").step=1,!0):void 0},menuScrollTouch:function(t,e){if(e=e.originalEvent,isTouchEvent(e)){var i=this.getTouchPoint(e);if(this.getClosestMenu(i.target)==t[0]){var s=t.dataSM("scroll");if(/(start|down)$/i.test(e.type))this.menuScrollStop(t)?(e.preventDefault(),this.$touchScrollingSub=t):this.$touchScrollingSub=null,this.menuScrollRefreshData(t),$.extend(s,{touchStartY:i.pageY,touchStartTime:e.timeStamp});else if(/move$/i.test(e.type)){var o=void 0!==s.touchY?s.touchY:s.touchStartY;if(void 0!==o&&o!=i.pageY){this.$touchScrollingSub=t;var a=i.pageY>o;void 0!==s.up&&s.up!=a&&$.extend(s,{touchStartY:i.pageY,touchStartTime:e.timeStamp}),$.extend(s,{up:a,touchY:i.pageY}),this.menuScroll(t,!0,Math.abs(i.pageY-o))}e.preventDefault()}else void 0!==s.touchY&&((s.momentum=15*Math.pow(Math.abs(i.pageY-s.touchStartY)/(e.timeStamp-s.touchStartTime),2)
-)&&(this.menuScrollStop(t),this.menuScroll(t),e.preventDefault()),delete s.touchY)}}},menuShow:function(t){if((t.dataSM("beforefirstshowfired")||(t.dataSM("beforefirstshowfired",!0),this.$root.triggerHandler("beforefirstshow.smapi",t[0])!==!1))&&this.$root.triggerHandler("beforeshow.smapi",t[0])!==!1&&(t.dataSM("shown-before",!0),canAnimate&&t.stop(!0,!0),!t.is(":visible"))){var e=t.dataSM("parent-a"),i=this.isCollapsible();if((this.opts.keepHighlighted||i)&&e.addClass("highlighted"),i)t.removeClass("sm-nowrap").css({zIndex:"",width:"auto",minWidth:"",maxWidth:"",top:"",left:"",marginLeft:"",marginTop:""});else{if(t.css("z-index",this.zIndexInc=(this.zIndexInc||this.getStartZIndex())+1),(this.opts.subMenusMinWidth||this.opts.subMenusMaxWidth)&&(t.css({width:"auto",minWidth:"",maxWidth:""}).addClass("sm-nowrap"),this.opts.subMenusMinWidth&&t.css("min-width",this.opts.subMenusMinWidth),this.opts.subMenusMaxWidth)){var s=this.getWidth(t);t.css("max-width",this.opts.subMenusMaxWidth),s>this.getWidth(t
-)&&t.removeClass("sm-nowrap").css("width",this.opts.subMenusMaxWidth)}this.menuPosition(t)}var o=function(){t.css("overflow","")};i?canAnimate&&this.opts.collapsibleShowFunction?this.opts.collapsibleShowFunction.call(this,t,o):t.show(this.opts.collapsibleShowDuration,o):canAnimate&&this.opts.showFunction?this.opts.showFunction.call(this,t,o):t.show(this.opts.showDuration,o),e.attr("aria-expanded","true"),t.attr({"aria-expanded":"true","aria-hidden":"false"}),this.visibleSubMenus.push(t),this.$root.triggerHandler("show.smapi",t[0])}},popupHide:function(t){this.hideTimeout&&(clearTimeout(this.hideTimeout),this.hideTimeout=0);var e=this;this.hideTimeout=setTimeout(function(){e.menuHideAll()},t?1:this.opts.hideTimeout)},popupShow:function(t,e){if(!this.opts.isPopup)return alert('SmartMenus jQuery Error:\n\nIf you want to show this menu via the "popupShow" method, set the isPopup:true option.'),void 0;if(this.hideTimeout&&(clearTimeout(this.hideTimeout),this.hideTimeout=0),this.$root.dataSM("shown-before",!0),
-canAnimate&&this.$root.stop(!0,!0),!this.$root.is(":visible")){this.$root.css({left:t,top:e});var i=this,s=function(){i.$root.css("overflow","")};canAnimate&&this.opts.showFunction?this.opts.showFunction.call(this,this.$root,s):this.$root.show(this.opts.showDuration,s),this.visibleSubMenus[0]=this.$root}},refresh:function(){this.destroy(!0),this.init(!0)},rootKeyDown:function(t){if(this.handleEvents())switch(t.keyCode){case 27:var e=this.activatedItems[0];if(e){this.menuHideAll(),e[0].focus();var i=e.dataSM("sub");i&&this.menuHide(i)}break;case 32:var s=$(t.target);if(s.is("a")&&this.handleItemEvents(s)){var i=s.dataSM("sub");i&&!i.is(":visible")&&(this.itemClick({currentTarget:t.target}),t.preventDefault())}}},rootOut:function(t){if(this.handleEvents()&&!this.isTouchMode()&&t.target!=this.$root[0]&&(this.hideTimeout&&(clearTimeout(this.hideTimeout),this.hideTimeout=0),!this.opts.showOnClick||!this.opts.hideOnClick)){var e=this;this.hideTimeout=setTimeout(function(){e.menuHideAll()},this.opts.hideTimeout)}},
-rootOver:function(t){this.handleEvents()&&!this.isTouchMode()&&t.target!=this.$root[0]&&this.hideTimeout&&(clearTimeout(this.hideTimeout),this.hideTimeout=0)},winResize:function(t){if(this.handleEvents()){if(!("onorientationchange"in window)||"orientationchange"==t.type){var e=this.isCollapsible();this.wasCollapsible&&e||(this.activatedItems.length&&this.activatedItems[this.activatedItems.length-1][0].blur(),this.menuHideAll()),this.wasCollapsible=e}}else if(this.$disableOverlay){var i=this.$root.offset();this.$disableOverlay.css({top:i.top,left:i.left,width:this.$root.outerWidth(),height:this.$root.outerHeight()})}}}}),$.fn.dataSM=function(t,e){return e?this.data(t+"_smartmenus",e):this.data(t+"_smartmenus")},$.fn.removeDataSM=function(t){return this.removeData(t+"_smartmenus")},$.fn.smartmenus=function(options){if("string"==typeof options){var args=arguments,method=options;return Array.prototype.shift.call(args),this.each(function(){var t=$(this).data("smartmenus");t&&t[method]&&t[method].apply(t,args)})}
-return this.each(function(){var dataOpts=$(this).data("sm-options")||null;if(dataOpts)try{dataOpts=eval("("+dataOpts+")")}catch(e){dataOpts=null,alert('ERROR\n\nSmartMenus jQuery init:\nInvalid "data-sm-options" attribute value syntax.')}new $.SmartMenus(this,$.extend({},$.fn.smartmenus.defaults,options,dataOpts))})},$.fn.smartmenus.defaults={isPopup:!1,mainMenuSubOffsetX:0,mainMenuSubOffsetY:0,subMenusSubOffsetX:0,subMenusSubOffsetY:0,subMenusMinWidth:"10em",subMenusMaxWidth:"20em",subIndicators:!0,subIndicatorsPos:"append",subIndicatorsText:"",scrollStep:30,scrollAccelerate:!0,showTimeout:250,hideTimeout:500,showDuration:0,showFunction:null,hideDuration:0,hideFunction:function(t,e){t.fadeOut(200,e)},collapsibleShowDuration:0,collapsibleShowFunction:function(t,e){t.slideDown(200,e)},collapsibleHideDuration:0,collapsibleHideFunction:function(t,e){t.slideUp(200,e)},showOnClick:!1,hideOnClick:!0,noMouseOver:!1,keepInViewport:!0,keepHighlighted:!0,markCurrentItem:!1,markCurrentTree:!0,rightToLeftSubMenus:!1,
-bottomToTopSubMenus:!1,collapsibleBehavior:"default"},$});
+ * Copyright Vasil Dinkov, Vadikom Web Ltd. http://vadikom.com; Licensed MIT */(function(t){"function"==typeof define&&define.amd?define(["jquery"],t):"object"==typeof module&&"object"==typeof module.exports?module.exports=t(require("jquery")):t(jQuery)})(function($){function initMouseDetection(t){var e=".smartmenus_mouse";if(mouseDetectionEnabled||t)mouseDetectionEnabled&&t&&($(document).off(e),mouseDetectionEnabled=!1);else{var i=!0,s=null,o={mousemove:function(t){var e={x:t.pageX,y:t.pageY,timeStamp:(new Date).getTime()};if(s){var o=Math.abs(s.x-e.x),a=Math.abs(s.y-e.y);if((o>0||a>0)&&2>=o&&2>=a&&300>=e.timeStamp-s.timeStamp&&(mouse=!0,i)){var n=$(t.target).closest("a");n.is("a")&&$.each(menuTrees,function(){return $.contains(this.$root[0],n[0])?(this.itemEnter({currentTarget:n[0]}),!1):void 0}),i=!1}}s=e}};o[touchEvents?"touchstart":"pointerover pointermove pointerout MSPointerOver MSPointerMove MSPointerOut"]=function(t){isTouchEvent(t.originalEvent)&&(mouse=!1)},$(document).on(getEventsNS(o,e)),mouseDetectionEnabled=!0}}function isTouchEvent(t){return!/^(4|mouse)$/.test(t.pointerType)}function getEventsNS(t,e){e||(e="");var i={};for(var s in t)i[s.split(" ").join(e+" ")+e]=t[s];return i}var menuTrees=[],mouse=!1,touchEvents="ontouchstart"in window,mouseDetectionEnabled=!1,requestAnimationFrame=window.requestAnimationFrame||function(t){return setTimeout(t,1e3/60)},cancelAnimationFrame=window.cancelAnimationFrame||function(t){clearTimeout(t)},canAnimate=!!$.fn.animate;return $.SmartMenus=function(t,e){this.$root=$(t),this.opts=e,this.rootId="",this.accessIdPrefix="",this.$subArrow=null,this.activatedItems=[],this.visibleSubMenus=[],this.showTimeout=0,this.hideTimeout=0,this.scrollTimeout=0,this.clickActivated=!1,this.focusActivated=!1,this.zIndexInc=0,this.idInc=0,this.$firstLink=null,this.$firstSub=null,this.disabled=!1,this.$disableOverlay=null,this.$touchScrollingSub=null,this.cssTransforms3d="perspective"in t.style||"webkitPerspective"in t.style,this.wasCollapsible=!1,this.init()},$.extend($.SmartMenus,{hideAll:function(){$.each(menuTrees,function(){this.menuHideAll()})},destroy:function(){for(;menuTrees.length;)menuTrees[0].destroy();initMouseDetection(!0)},prototype:{init:function(t){var e=this;if(!t){menuTrees.push(this),this.rootId=((new Date).getTime()+Math.random()+"").replace(/\D/g,""),this.accessIdPrefix="sm-"+this.rootId+"-",this.$root.hasClass("sm-rtl")&&(this.opts.rightToLeftSubMenus=!0);var i=".smartmenus";this.$root.data("smartmenus",this).attr("data-smartmenus-id",this.rootId).dataSM("level",1).on(getEventsNS({"mouseover focusin":$.proxy(this.rootOver,this),"mouseout focusout":$.proxy(this.rootOut,this),keydown:$.proxy(this.rootKeyDown,this)},i)).on(getEventsNS({mouseenter:$.proxy(this.itemEnter,this),mouseleave:$.proxy(this.itemLeave,this),mousedown:$.proxy(this.itemDown,this),focus:$.proxy(this.itemFocus,this),blur:$.proxy(this.itemBlur,this),click:$.proxy(this.itemClick,this)},i),"a"),i+=this.rootId,this.opts.hideOnClick&&$(document).on(getEventsNS({touchstart:$.proxy(this.docTouchStart,this),touchmove:$.proxy(this.docTouchMove,this),touchend:$.proxy(this.docTouchEnd,this),click:$.proxy(this.docClick,this)},i)),$(window).on(getEventsNS({"resize orientationchange":$.proxy(this.winResize,this)},i)),this.opts.subIndicators&&(this.$subArrow=$("<span/>").addClass("sub-arrow"),this.opts.subIndicatorsText&&this.$subArrow.html(this.opts.subIndicatorsText)),initMouseDetection()}if(this.$firstSub=this.$root.find("ul").each(function(){e.menuInit($(this))}).eq(0),this.$firstLink=this.$root.find("a").eq(0),this.opts.markCurrentItem){var s=/(index|default)\.[^#\?\/]*/i,o=/#.*/,a=window.location.href.replace(s,""),n=a.replace(o,"");this.$root.find("a").each(function(){var t=this.href.replace(s,""),i=$(this);(t==a||t==n)&&(i.addClass("current"),e.opts.markCurrentTree&&i.parentsUntil("[data-smartmenus-id]","ul").each(function(){$(this).dataSM("parent-a").addClass("current")}))})}this.wasCollapsible=this.isCollapsible()},destroy:function(t){if(!t){var e=".smartmenus";this.$root.removeData("smartmenus").removeAttr("data-smartmenus-id").removeDataSM("level").off(e),e+=this.rootId,$(document).off(e),$(window).off(e),this.opts.subIndicators&&(this.$subArrow=null)}this.menuHideAll();var i=this;this.$root.find("ul").each(function(){var t=$(this);t.dataSM("scroll-arrows")&&t.dataSM("scroll-arrows").remove(),t.dataSM("shown-before")&&((i.opts.subMenusMinWidth||i.opts.subMenusMaxWidth)&&t.css({width:"",minWidth:"",maxWidth:""}).removeClass("sm-nowrap"),t.dataSM("scroll-arrows")&&t.dataSM("scroll-arrows").remove(),t.css({zIndex:"",top:"",left:"",marginLeft:"",marginTop:"",display:""})),0==(t.attr("id")||"").indexOf(i.accessIdPrefix)&&t.removeAttr("id")}).removeDataSM("in-mega").removeDataSM("shown-before").removeDataSM("scroll-arrows").removeDataSM("parent-a").removeDataSM("level").removeDataSM("beforefirstshowfired").removeAttr("role").removeAttr("aria-hidden").removeAttr("aria-labelledby").removeAttr("aria-expanded"),this.$root.find("a.has-submenu").each(function(){var t=$(this);0==t.attr("id").indexOf(i.accessIdPrefix)&&t.removeAttr("id")}).removeClass("has-submenu").removeDataSM("sub").removeAttr("aria-haspopup").removeAttr("aria-controls").removeAttr("aria-expanded").closest("li").removeDataSM("sub"),this.opts.subIndicators&&this.$root.find("span.sub-arrow").remove(),this.opts.markCurrentItem&&this.$root.find("a.current").removeClass("current"),t||(this.$root=null,this.$firstLink=null,this.$firstSub=null,this.$disableOverlay&&(this.$disableOverlay.remove(),this.$disableOverlay=null),menuTrees.splice($.inArray(this,menuTrees),1))},disable:function(t){if(!this.disabled){if(this.menuHideAll(),!t&&!this.opts.isPopup&&this.$root.is(":visible")){var e=this.$root.offset();this.$disableOverlay=$('<div class="sm-jquery-disable-overlay"/>').css({position:"absolute",top:e.top,left:e.left,width:this.$root.outerWidth(),height:this.$root.outerHeight(),zIndex:this.getStartZIndex(!0),opacity:0}).appendTo(document.body)}this.disabled=!0}},docClick:function(t){return this.$touchScrollingSub?(this.$touchScrollingSub=null,void 0):((this.visibleSubMenus.length&&!$.contains(this.$root[0],t.target)||$(t.target).closest("a").length)&&this.menuHideAll(),void 0)},docTouchEnd:function(){if(this.lastTouch){if(!(!this.visibleSubMenus.length||void 0!==this.lastTouch.x2&&this.lastTouch.x1!=this.lastTouch.x2||void 0!==this.lastTouch.y2&&this.lastTouch.y1!=this.lastTouch.y2||this.lastTouch.target&&$.contains(this.$root[0],this.lastTouch.target))){this.hideTimeout&&(clearTimeout(this.hideTimeout),this.hideTimeout=0);var t=this;this.hideTimeout=setTimeout(function(){t.menuHideAll()},350)}this.lastTouch=null}},docTouchMove:function(t){if(this.lastTouch){var e=t.originalEvent.touches[0];this.lastTouch.x2=e.pageX,this.lastTouch.y2=e.pageY}},docTouchStart:function(t){var e=t.originalEvent.touches[0];this.lastTouch={x1:e.pageX,y1:e.pageY,target:e.target}},enable:function(){this.disabled&&(this.$disableOverlay&&(this.$disableOverlay.remove(),this.$disableOverlay=null),this.disabled=!1)},getClosestMenu:function(t){for(var e=$(t).closest("ul");e.dataSM("in-mega");)e=e.parent().closest("ul");return e[0]||null},getHeight:function(t){return this.getOffset(t,!0)},getOffset:function(t,e){var i;"none"==t.css("display")&&(i={position:t[0].style.position,visibility:t[0].style.visibility},t.css({position:"absolute",visibility:"hidden"}).show());var s=t[0].getBoundingClientRect&&t[0].getBoundingClientRect(),o=s&&(e?s.height||s.bottom-s.top:s.width||s.right-s.left);return o||0===o||(o=e?t[0].offsetHeight:t[0].offsetWidth),i&&t.hide().css(i),o},getStartZIndex:function(t){var e=parseInt(this[t?"$root":"$firstSub"].css("z-index"));return!t&&isNaN(e)&&(e=parseInt(this.$root.css("z-index"))),isNaN(e)?1:e},getTouchPoint:function(t){return t.touches&&t.touches[0]||t.changedTouches&&t.changedTouches[0]||t},getViewport:function(t){var e=t?"Height":"Width",i=document.documentElement["client"+e],s=window["inner"+e];return s&&(i=Math.min(i,s)),i},getViewportHeight:function(){return this.getViewport(!0)},getViewportWidth:function(){return this.getViewport()},getWidth:function(t){return this.getOffset(t)},handleEvents:function(){return!this.disabled&&this.isCSSOn()},handleItemEvents:function(t){return this.handleEvents()&&!this.isLinkInMegaMenu(t)},isCollapsible:function(){return"static"==this.$firstSub.css("position")},isCSSOn:function(){return"inline"!=this.$firstLink.css("display")},isFixed:function(){var t="fixed"==this.$root.css("position");return t||this.$root.parentsUntil("body").each(function(){return"fixed"==$(this).css("position")?(t=!0,!1):void 0}),t},isLinkInMegaMenu:function(t){return $(this.getClosestMenu(t[0])).hasClass("mega-menu")},isTouchMode:function(){return!mouse||this.opts.noMouseOver||this.isCollapsible()},itemActivate:function(t,e){var i=t.closest("ul"),s=i.dataSM("level");if(s>1&&(!this.activatedItems[s-2]||this.activatedItems[s-2][0]!=i.dataSM("parent-a")[0])){var o=this;$(i.parentsUntil("[data-smartmenus-id]","ul").get().reverse()).add(i).each(function(){o.itemActivate($(this).dataSM("parent-a"))})}if((!this.isCollapsible()||e)&&this.menuHideSubMenus(this.activatedItems[s-1]&&this.activatedItems[s-1][0]==t[0]?s:s-1),this.activatedItems[s-1]=t,this.$root.triggerHandler("activate.smapi",t[0])!==!1){var a=t.dataSM("sub");a&&(this.isTouchMode()||!this.opts.showOnClick||this.clickActivated)&&this.menuShow(a)}},itemBlur:function(t){var e=$(t.currentTarget);this.handleItemEvents(e)&&this.$root.triggerHandler("blur.smapi",e[0])},itemClick:function(t){var e=$(t.currentTarget);if(this.handleItemEvents(e)){if(this.$touchScrollingSub&&this.$touchScrollingSub[0]==e.closest("ul")[0])return this.$touchScrollingSub=null,t.stopPropagation(),!1;if(this.$root.triggerHandler("click.smapi",e[0])===!1)return!1;var i=$(t.target).is(".sub-arrow"),s=e.dataSM("sub"),o=s?2==s.dataSM("level"):!1,a=this.isCollapsible(),n=/toggle$/.test(this.opts.collapsibleBehavior),r=/link$/.test(this.opts.collapsibleBehavior),h=/^accordion/.test(this.opts.collapsibleBehavior);if(s&&!s.is(":visible")){if((!r||!a||i)&&(this.opts.showOnClick&&o&&(this.clickActivated=!0),this.itemActivate(e,h),s.is(":visible")))return this.focusActivated=!0,!1}else if(a&&(n||i))return this.itemActivate(e,h),this.menuHide(s),n&&(this.focusActivated=!1),!1;return this.opts.showOnClick&&o||e.hasClass("disabled")||this.$root.triggerHandler("select.smapi",e[0])===!1?!1:void 0}},itemDown:function(t){var e=$(t.currentTarget);this.handleItemEvents(e)&&e.dataSM("mousedown",!0)},itemEnter:function(t){var e=$(t.currentTarget);if(this.handleItemEvents(e)){if(!this.isTouchMode()){this.showTimeout&&(clearTimeout(this.showTimeout),this.showTimeout=0);var i=this;this.showTimeout=setTimeout(function(){i.itemActivate(e)},this.opts.showOnClick&&1==e.closest("ul").dataSM("level")?1:this.opts.showTimeout)}this.$root.triggerHandler("mouseenter.smapi",e[0])}},itemFocus:function(t){var e=$(t.currentTarget);this.handleItemEvents(e)&&(!this.focusActivated||this.isTouchMode()&&e.dataSM("mousedown")||this.activatedItems.length&&this.activatedItems[this.activatedItems.length-1][0]==e[0]||this.itemActivate(e,!0),this.$root.triggerHandler("focus.smapi",e[0]))},itemLeave:function(t){var e=$(t.currentTarget);this.handleItemEvents(e)&&(this.isTouchMode()||(e[0].blur(),this.showTimeout&&(clearTimeout(this.showTimeout),this.showTimeout=0)),e.removeDataSM("mousedown"),this.$root.triggerHandler("mouseleave.smapi",e[0]))},menuHide:function(t){if(this.$root.triggerHandler("beforehide.smapi",t[0])!==!1&&(canAnimate&&t.stop(!0,!0),"none"!=t.css("display"))){var e=function(){t.css("z-index","")};this.isCollapsible()?canAnimate&&this.opts.collapsibleHideFunction?this.opts.collapsibleHideFunction.call(this,t,e):t.hide(this.opts.collapsibleHideDuration,e):canAnimate&&this.opts.hideFunction?this.opts.hideFunction.call(this,t,e):t.hide(this.opts.hideDuration,e),t.dataSM("scroll")&&(this.menuScrollStop(t),t.css({"touch-action":"","-ms-touch-action":"","-webkit-transform":"",transform:""}).off(".smartmenus_scroll").removeDataSM("scroll").dataSM("scroll-arrows").hide()),t.dataSM("parent-a").removeClass("highlighted").attr("aria-expanded","false"),t.attr({"aria-expanded":"false","aria-hidden":"true"});var i=t.dataSM("level");this.activatedItems.splice(i-1,1),this.visibleSubMenus.splice($.inArray(t,this.visibleSubMenus),1),this.$root.triggerHandler("hide.smapi",t[0])}},menuHideAll:function(){this.showTimeout&&(clearTimeout(this.showTimeout),this.showTimeout=0);for(var t=this.opts.isPopup?1:0,e=this.visibleSubMenus.length-1;e>=t;e--)this.menuHide(this.visibleSubMenus[e]);this.opts.isPopup&&(canAnimate&&this.$root.stop(!0,!0),this.$root.is(":visible")&&(canAnimate&&this.opts.hideFunction?this.opts.hideFunction.call(this,this.$root):this.$root.hide(this.opts.hideDuration))),this.activatedItems=[],this.visibleSubMenus=[],this.clickActivated=!1,this.focusActivated=!1,this.zIndexInc=0,this.$root.triggerHandler("hideAll.smapi")},menuHideSubMenus:function(t){for(var e=this.activatedItems.length-1;e>=t;e--){var i=this.activatedItems[e].dataSM("sub");i&&this.menuHide(i)}},menuInit:function(t){if(!t.dataSM("in-mega")){t.hasClass("mega-menu")&&t.find("ul").dataSM("in-mega",!0);for(var e=2,i=t[0];(i=i.parentNode.parentNode)!=this.$root[0];)e++;var s=t.prevAll("a").eq(-1);s.length||(s=t.prevAll().find("a").eq(-1)),s.addClass("has-submenu").dataSM("sub",t),t.dataSM("parent-a",s).dataSM("level",e).parent().dataSM("sub",t);var o=s.attr("id")||this.accessIdPrefix+ ++this.idInc,a=t.attr("id")||this.accessIdPrefix+ ++this.idInc;s.attr({id:o,"aria-haspopup":"true","aria-controls":a,"aria-expanded":"false"}),t.attr({id:a,role:"group","aria-hidden":"true","aria-labelledby":o,"aria-expanded":"false"}),this.opts.subIndicators&&s[this.opts.subIndicatorsPos](this.$subArrow.clone())}},menuPosition:function(t){var e,i,s=t.dataSM("parent-a"),o=s.closest("li"),a=o.parent(),n=t.dataSM("level"),r=this.getWidth(t),h=this.getHeight(t),u=s.offset(),l=u.left,c=u.top,d=this.getWidth(s),m=this.getHeight(s),p=$(window),f=p.scrollLeft(),v=p.scrollTop(),b=this.getViewportWidth(),S=this.getViewportHeight(),g=a.parent().is("[data-sm-horizontal-sub]")||2==n&&!a.hasClass("sm-vertical"),M=this.opts.rightToLeftSubMenus&&!o.is("[data-sm-reverse]")||!this.opts.rightToLeftSubMenus&&o.is("[data-sm-reverse]"),w=2==n?this.opts.mainMenuSubOffsetX:this.opts.subMenusSubOffsetX,T=2==n?this.opts.mainMenuSubOffsetY:this.opts.subMenusSubOffsetY;if(g?(e=M?d-r-w:w,i=this.opts.bottomToTopSubMenus?-h-T:m+T):(e=M?w-r:d-w,i=this.opts.bottomToTopSubMenus?m-T-h:T),this.opts.keepInViewport){var y=l+e,I=c+i;if(M&&f>y?e=g?f-y+e:d-w:!M&&y+r>f+b&&(e=g?f+b-r-y+e:w-r),g||(S>h&&I+h>v+S?i+=v+S-h-I:(h>=S||v>I)&&(i+=v-I)),g&&(I+h>v+S+.49||v>I)||!g&&h>S+.49){var x=this;t.dataSM("scroll-arrows")||t.dataSM("scroll-arrows",$([$('<span class="scroll-up"><span class="scroll-up-arrow"></span></span>')[0],$('<span class="scroll-down"><span class="scroll-down-arrow"></span></span>')[0]]).on({mouseenter:function(){t.dataSM("scroll").up=$(this).hasClass("scroll-up"),x.menuScroll(t)},mouseleave:function(e){x.menuScrollStop(t),x.menuScrollOut(t,e)},"mousewheel DOMMouseScroll":function(t){t.preventDefault()}}).insertAfter(t));var A=".smartmenus_scroll";if(t.dataSM("scroll",{y:this.cssTransforms3d?0:i-m,step:1,itemH:m,subH:h,arrowDownH:this.getHeight(t.dataSM("scroll-arrows").eq(1))}).on(getEventsNS({mouseover:function(e){x.menuScrollOver(t,e)},mouseout:function(e){x.menuScrollOut(t,e)},"mousewheel DOMMouseScroll":function(e){x.menuScrollMousewheel(t,e)}},A)).dataSM("scroll-arrows").css({top:"auto",left:"0",marginLeft:e+(parseInt(t.css("border-left-width"))||0),width:r-(parseInt(t.css("border-left-width"))||0)-(parseInt(t.css("border-right-width"))||0),zIndex:t.css("z-index")}).eq(g&&this.opts.bottomToTopSubMenus?0:1).show(),this.isFixed()){var C={};C[touchEvents?"touchstart touchmove touchend":"pointerdown pointermove pointerup MSPointerDown MSPointerMove MSPointerUp"]=function(e){x.menuScrollTouch(t,e)},t.css({"touch-action":"none","-ms-touch-action":"none"}).on(getEventsNS(C,A))}}}t.css({top:"auto",left:"0",marginLeft:e,marginTop:i-m})},menuScroll:function(t,e,i){var s,o=t.dataSM("scroll"),a=t.dataSM("scroll-arrows"),n=o.up?o.upEnd:o.downEnd;if(!e&&o.momentum){if(o.momentum*=.92,s=o.momentum,.5>s)return this.menuScrollStop(t),void 0}else s=i||(e||!this.opts.scrollAccelerate?this.opts.scrollStep:Math.floor(o.step));var r=t.dataSM("level");if(this.activatedItems[r-1]&&this.activatedItems[r-1].dataSM("sub")&&this.activatedItems[r-1].dataSM("sub").is(":visible")&&this.menuHideSubMenus(r-1),o.y=o.up&&o.y>=n||!o.up&&n>=o.y?o.y:Math.abs(n-o.y)>s?o.y+(o.up?s:-s):n,t.css(this.cssTransforms3d?{"-webkit-transform":"translate3d(0, "+o.y+"px, 0)",transform:"translate3d(0, "+o.y+"px, 0)"}:{marginTop:o.y}),mouse&&(o.up&&o.y>o.downEnd||!o.up&&o.y<o.upEnd)&&a.eq(o.up?1:0).show(),o.y==n)mouse&&a.eq(o.up?0:1).hide(),this.menuScrollStop(t);else if(!e){this.opts.scrollAccelerate&&o.step<this.opts.scrollStep&&(o.step+=.2);var h=this;this.scrollTimeout=requestAnimationFrame(function(){h.menuScroll(t)})}},menuScrollMousewheel:function(t,e){if(this.getClosestMenu(e.target)==t[0]){e=e.originalEvent;var i=(e.wheelDelta||-e.detail)>0;t.dataSM("scroll-arrows").eq(i?0:1).is(":visible")&&(t.dataSM("scroll").up=i,this.menuScroll(t,!0))}e.preventDefault()},menuScrollOut:function(t,e){mouse&&(/^scroll-(up|down)/.test((e.relatedTarget||"").className)||(t[0]==e.relatedTarget||$.contains(t[0],e.relatedTarget))&&this.getClosestMenu(e.relatedTarget)==t[0]||t.dataSM("scroll-arrows").css("visibility","hidden"))},menuScrollOver:function(t,e){if(mouse&&!/^scroll-(up|down)/.test(e.target.className)&&this.getClosestMenu(e.target)==t[0]){this.menuScrollRefreshData(t);var i=t.dataSM("scroll"),s=$(window).scrollTop()-t.dataSM("parent-a").offset().top-i.itemH;t.dataSM("scroll-arrows").eq(0).css("margin-top",s).end().eq(1).css("margin-top",s+this.getViewportHeight()-i.arrowDownH).end().css("visibility","visible")}},menuScrollRefreshData:function(t){var e=t.dataSM("scroll"),i=$(window).scrollTop()-t.dataSM("parent-a").offset().top-e.itemH;this.cssTransforms3d&&(i=-(parseFloat(t.css("margin-top"))-i)),$.extend(e,{upEnd:i,downEnd:i+this.getViewportHeight()-e.subH})},menuScrollStop:function(t){return this.scrollTimeout?(cancelAnimationFrame(this.scrollTimeout),this.scrollTimeout=0,t.dataSM("scroll").step=1,!0):void 0},menuScrollTouch:function(t,e){if(e=e.originalEvent,isTouchEvent(e)){var i=this.getTouchPoint(e);if(this.getClosestMenu(i.target)==t[0]){var s=t.dataSM("scroll");if(/(start|down)$/i.test(e.type))this.menuScrollStop(t)?(e.preventDefault(),this.$touchScrollingSub=t):this.$touchScrollingSub=null,this.menuScrollRefreshData(t),$.extend(s,{touchStartY:i.pageY,touchStartTime:e.timeStamp});else if(/move$/i.test(e.type)){var o=void 0!==s.touchY?s.touchY:s.touchStartY;if(void 0!==o&&o!=i.pageY){this.$touchScrollingSub=t;var a=i.pageY>o;void 0!==s.up&&s.up!=a&&$.extend(s,{touchStartY:i.pageY,touchStartTime:e.timeStamp}),$.extend(s,{up:a,touchY:i.pageY}),this.menuScroll(t,!0,Math.abs(i.pageY-o))}e.preventDefault()}else void 0!==s.touchY&&((s.momentum=15*Math.pow(Math.abs(i.pageY-s.touchStartY)/(e.timeStamp-s.touchStartTime),2))&&(this.menuScrollStop(t),this.menuScroll(t),e.preventDefault()),delete s.touchY)}}},menuShow:function(t){if((t.dataSM("beforefirstshowfired")||(t.dataSM("beforefirstshowfired",!0),this.$root.triggerHandler("beforefirstshow.smapi",t[0])!==!1))&&this.$root.triggerHandler("beforeshow.smapi",t[0])!==!1&&(t.dataSM("shown-before",!0),canAnimate&&t.stop(!0,!0),!t.is(":visible"))){var e=t.dataSM("parent-a"),i=this.isCollapsible();if((this.opts.keepHighlighted||i)&&e.addClass("highlighted"),i)t.removeClass("sm-nowrap").css({zIndex:"",width:"auto",minWidth:"",maxWidth:"",top:"",left:"",marginLeft:"",marginTop:""});else{if(t.css("z-index",this.zIndexInc=(this.zIndexInc||this.getStartZIndex())+1),(this.opts.subMenusMinWidth||this.opts.subMenusMaxWidth)&&(t.css({width:"auto",minWidth:"",maxWidth:""}).addClass("sm-nowrap"),this.opts.subMenusMinWidth&&t.css("min-width",this.opts.subMenusMinWidth),this.opts.subMenusMaxWidth)){var s=this.getWidth(t);t.css("max-width",this.opts.subMenusMaxWidth),s>this.getWidth(t)&&t.removeClass("sm-nowrap").css("width",this.opts.subMenusMaxWidth)}this.menuPosition(t)}var 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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+    [ "gridfire::utils::Streamable", "conceptgridfire_1_1utils_1_1Streamable.html", null ],
+    [ "formatNuclearTimescaleLogString", "logging_8h.html#a3d0646bcc1a6fd8df22ac0c758bfd5c4", null ],
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-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1engine_1_1_reaction_set.html">ReactionSet</a></td></tr>
-<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1_step_derivatives.html">StepDerivatives</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Structure holding derivatives and energy generation for a network step.  <a href="structgridfire_1_1engine_1_1_step_derivatives.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">StepDerivatives</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Structure holding derivatives and energy generation for a network step.  <a href="structgridfire_1_1engine_1_1StepDerivatives.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="concepts" name="concepts"></a>
 Concepts</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">concept &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="conceptgridfire_1_1engine_1_1_engine_type.html">EngineType</a></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">concept &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="conceptgridfire_1_1engine_1_1EngineType.html">EngineType</a></td></tr>
 <tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Concept for types allowed as engine bases in EngineView. <br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="typedef-members" name="typedef-members"></a>
 Typedefs</h2></td></tr>
-<tr class="memitem:a9de1791ec719c0a9b76b835703336870" id="r_a9de1791ec719c0a9b76b835703336870"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9de1791ec719c0a9b76b835703336870">SparsityPattern</a> = std::vector&lt;std::pair&lt;size_t, size_t&gt;&gt;</td></tr>
-<tr class="memdesc:a9de1791ec719c0a9b76b835703336870"><td class="mdescLeft">&#160;</td><td class="mdescRight">Type alias for sparsity pattern representation.  <br /></td></tr>
-<tr class="separator:a9de1791ec719c0a9b76b835703336870"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a4562b782e8096986a9b0cc95aa8c1c02" id="r_a4562b782e8096986a9b0cc95aa8c1c02"><td class="memItemLeft" align="right" valign="top">typedef CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4562b782e8096986a9b0cc95aa8c1c02">ADDouble</a></td></tr>
+<tr class="memitem:af5175018d2d1e78a8826dd33ec6d675f" id="r_af5175018d2d1e78a8826dd33ec6d675f"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#af5175018d2d1e78a8826dd33ec6d675f">SparsityPattern</a> = std::vector&lt; std::pair&lt; size_t, size_t &gt; &gt;</td></tr>
+<tr class="memdesc:af5175018d2d1e78a8826dd33ec6d675f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Type alias for sparsity pattern representation.  <br /></td></tr>
+<tr class="separator:af5175018d2d1e78a8826dd33ec6d675f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4562b782e8096986a9b0cc95aa8c1c02" id="r_a4562b782e8096986a9b0cc95aa8c1c02"><td class="memItemLeft" align="right" valign="top">typedef CppAD::AD&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#a4562b782e8096986a9b0cc95aa8c1c02">ADDouble</a></td></tr>
 <tr class="memdesc:a4562b782e8096986a9b0cc95aa8c1c02"><td class="mdescLeft">&#160;</td><td class="mdescRight">Alias for CppAD AD type for double precision.  <br /></td></tr>
 <tr class="separator:a4562b782e8096986a9b0cc95aa8c1c02"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a55cd7c313bbfafd5b6a1bcd6329ed99b" id="r_a55cd7c313bbfafd5b6a1bcd6329ed99b"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a55cd7c313bbfafd5b6a1bcd6329ed99b">BuildDepthType</a> = std::variant&lt;<a class="el" href="#a782fbc9eca00df10e4a204ae6da733e7">NetworkBuildDepth</a>, int&gt;</td></tr>
-<tr class="memdesc:a55cd7c313bbfafd5b6a1bcd6329ed99b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Variant specifying either a predefined <a class="el" href="#a782fbc9eca00df10e4a204ae6da733e7" title="Specifies supported depths for building the reaction network.">NetworkBuildDepth</a> or a custom integer depth.  <br /></td></tr>
-<tr class="separator:a55cd7c313bbfafd5b6a1bcd6329ed99b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa7b127f4fe99188e3d94ff11608d54f0" id="r_aa7b127f4fe99188e3d94ff11608d54f0"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa7b127f4fe99188e3d94ff11608d54f0">JacobianEntry</a> = std::pair&lt;std::pair&lt;fourdst::atomic::Species, fourdst::atomic::Species&gt;, double&gt;</td></tr>
-<tr class="memdesc:aa7b127f4fe99188e3d94ff11608d54f0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Represents an entry in the Jacobian matrix.  <br /></td></tr>
-<tr class="separator:aa7b127f4fe99188e3d94ff11608d54f0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a540b6420c7b6271717ec9b640140f6c0" id="r_a540b6420c7b6271717ec9b640140f6c0"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">BuildDepthType</a> = std::variant&lt; <a class="el" href="namespacegridfire_1_1engine.html#a782fbc9eca00df10e4a204ae6da733e7">NetworkBuildDepth</a>, int &gt;</td></tr>
+<tr class="memdesc:a540b6420c7b6271717ec9b640140f6c0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Variant specifying either a predefined NetworkBuildDepth or a custom integer depth.  <br /></td></tr>
+<tr class="separator:a540b6420c7b6271717ec9b640140f6c0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac7974616b5fd465c4a42e3d882cdde6e" id="r_ac7974616b5fd465c4a42e3d882cdde6e"><td class="memItemLeft" align="right" valign="top">using&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#ac7974616b5fd465c4a42e3d882cdde6e">JacobianEntry</a> = std::pair&lt; std::pair&lt; fourdst::atomic::Species, fourdst::atomic::Species &gt;, double &gt;</td></tr>
+<tr class="memdesc:ac7974616b5fd465c4a42e3d882cdde6e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Represents an entry in the Jacobian matrix.  <br /></td></tr>
+<tr class="separator:ac7974616b5fd465c4a42e3d882cdde6e"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="enum-members" name="enum-members"></a>
 Enumerations</h2></td></tr>
-<tr class="memitem:a4d057e41b489bf20744dfa8d2958ad5a" id="r_a4d057e41b489bf20744dfa8d2958ad5a"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> { <a class="el" href="#a4d057e41b489bf20744dfa8d2958ad5aa74eb855e4de6fe58228f03006c02fd8a">OKAY</a>
-, <a class="el" href="#a4d057e41b489bf20744dfa8d2958ad5aa4d855a061b3066dc14a3b12ed26b5456">STALE</a>
-, <a class="el" href="#a4d057e41b489bf20744dfa8d2958ad5aabb1ca97ec761fc37101737ba0aa2e7c5">ERROR</a>
-, <a class="el" href="#a4d057e41b489bf20744dfa8d2958ad5aa4905ac9d6a22bdfc1ae096094ce6248d">COUNT</a>
+<tr class="memitem:a4d057e41b489bf20744dfa8d2958ad5a" id="r_a4d057e41b489bf20744dfa8d2958ad5a"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> { <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5aa74eb855e4de6fe58228f03006c02fd8a">OKAY</a>
+, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5aa4d855a061b3066dc14a3b12ed26b5456">STALE</a>
+, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5aabb1ca97ec761fc37101737ba0aa2e7c5">ERROR</a>
+, <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5aa4905ac9d6a22bdfc1ae096094ce6248d">COUNT</a>
  }</td></tr>
-<tr class="memdesc:a4d057e41b489bf20744dfa8d2958ad5a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Enumeration of possible engine statuses.  <a href="#a4d057e41b489bf20744dfa8d2958ad5a">More...</a><br /></td></tr>
+<tr class="memdesc:a4d057e41b489bf20744dfa8d2958ad5a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Enumeration of possible engine statuses.  <a href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">More...</a><br /></td></tr>
 <tr class="separator:a4d057e41b489bf20744dfa8d2958ad5a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a775506bb881280f73264db27cb8388f9" id="r_a775506bb881280f73264db27cb8388f9"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> : uint32_t { <br />
-&#160;&#160;<a class="el" href="#a775506bb881280f73264db27cb8388f9ab50339a10e1de285ac99d4c3990b8693">NONE</a> = 0
-, <a class="el" href="#a775506bb881280f73264db27cb8388f9a8211eaf8b0f0de1a6b0bf199da5975e1">REACLIB_STRONG</a> = 1 &lt;&lt; 0
-, <a class="el" href="#a775506bb881280f73264db27cb8388f9a08b95f789a0c024936e08b95c41865c4">WRL_BETA_MINUS</a> = 1 &lt;&lt; 1
-, <a class="el" href="#a775506bb881280f73264db27cb8388f9a49e3e12f2ea5b0d29df72a8a36f18d4a">WRL_BETA_PLUS</a> = 1 &lt;&lt; 2
+<tr class="memitem:a775506bb881280f73264db27cb8388f9" id="r_a775506bb881280f73264db27cb8388f9"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> : uint32_t { <br />
+&#160;&#160;<a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9ab50339a10e1de285ac99d4c3990b8693">NONE</a> = 0
+, <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9a8211eaf8b0f0de1a6b0bf199da5975e1">REACLIB_STRONG</a> = 1 &lt;&lt; 0
+, <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9a08b95f789a0c024936e08b95c41865c4">WRL_BETA_MINUS</a> = 1 &lt;&lt; 1
+, <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9a49e3e12f2ea5b0d29df72a8a36f18d4a">WRL_BETA_PLUS</a> = 1 &lt;&lt; 2
 , <br />
-&#160;&#160;<a class="el" href="#a775506bb881280f73264db27cb8388f9af3d03bd75d332304afee1ab36498223e">WRL_ELECTRON_CAPTURE</a> = 1 &lt;&lt; 3
-, <a class="el" href="#a775506bb881280f73264db27cb8388f9a0712c13f98dca85d8d8bb9606283b955">WRL_POSITRON_CAPTURE</a> = 1 &lt;&lt; 4
-, <a class="el" href="#a775506bb881280f73264db27cb8388f9ab736eb13fff62c962f63232ec57f2692">REACLIB_WEAK</a> = 1 &lt;&lt; 5
-, <a class="el" href="#a775506bb881280f73264db27cb8388f9afc9a7c10ff86192133ca7a280783bfe4">WRL_WEAK</a> = WRL_BETA_MINUS | WRL_BETA_PLUS | WRL_ELECTRON_CAPTURE | WRL_POSITRON_CAPTURE
+&#160;&#160;<a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9af3d03bd75d332304afee1ab36498223e">WRL_ELECTRON_CAPTURE</a> = 1 &lt;&lt; 3
+, <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9a0712c13f98dca85d8d8bb9606283b955">WRL_POSITRON_CAPTURE</a> = 1 &lt;&lt; 4
+, <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9ab736eb13fff62c962f63232ec57f2692">REACLIB_WEAK</a> = 1 &lt;&lt; 5
+, <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9afc9a7c10ff86192133ca7a280783bfe4">WRL_WEAK</a> = WRL_BETA_MINUS | WRL_BETA_PLUS | WRL_ELECTRON_CAPTURE | WRL_POSITRON_CAPTURE
 , <br />
-&#160;&#160;<a class="el" href="#a775506bb881280f73264db27cb8388f9af9885ed04411bef7b70f78b643c6a220">REACLIB</a> = REACLIB_STRONG | REACLIB_WEAK
-, <a class="el" href="#a775506bb881280f73264db27cb8388f9a5b39c8b553c821e7cddc6da64b5bd2ee">DEFAULT</a> = REACLIB
+&#160;&#160;<a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9af9885ed04411bef7b70f78b643c6a220">REACLIB</a> = REACLIB_STRONG | REACLIB_WEAK
+, <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9a5b39c8b553c821e7cddc6da64b5bd2ee">DEFAULT</a> = REACLIB
 <br />
  }</td></tr>
-<tr class="memdesc:a775506bb881280f73264db27cb8388f9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Flags to specify which types of nuclear reactions to include when constructing a reaction network.  <a href="#a775506bb881280f73264db27cb8388f9">More...</a><br /></td></tr>
+<tr class="memdesc:a775506bb881280f73264db27cb8388f9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Flags to specify which types of nuclear reactions to include when constructing a reaction network.  <a href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">More...</a><br /></td></tr>
 <tr class="separator:a775506bb881280f73264db27cb8388f9"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a782fbc9eca00df10e4a204ae6da733e7" id="r_a782fbc9eca00df10e4a204ae6da733e7"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a782fbc9eca00df10e4a204ae6da733e7">NetworkBuildDepth</a> { <br />
-&#160;&#160;<a class="el" href="#a782fbc9eca00df10e4a204ae6da733e7abbd47109890259c0127154db1af26c75">Full</a> = -1
-, <a class="el" href="#a782fbc9eca00df10e4a204ae6da733e7a928d0f1285ee7d36c1c2fa1b1b7a164c">Shallow</a> = 1
-, <a class="el" href="#a782fbc9eca00df10e4a204ae6da733e7a264572d66aed5373d19dc80c7cde1f46">SecondOrder</a> = 2
-, <a class="el" href="#a782fbc9eca00df10e4a204ae6da733e7a3fc719e07f9f63e7f11a3d4fb74b476f">ThirdOrder</a> = 3
+<tr class="memitem:a782fbc9eca00df10e4a204ae6da733e7" id="r_a782fbc9eca00df10e4a204ae6da733e7"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#a782fbc9eca00df10e4a204ae6da733e7">NetworkBuildDepth</a> { <br />
+&#160;&#160;<a class="el" href="namespacegridfire_1_1engine.html#a782fbc9eca00df10e4a204ae6da733e7abbd47109890259c0127154db1af26c75">Full</a> = -1
+, <a class="el" href="namespacegridfire_1_1engine.html#a782fbc9eca00df10e4a204ae6da733e7a928d0f1285ee7d36c1c2fa1b1b7a164c">Shallow</a> = 1
+, <a class="el" href="namespacegridfire_1_1engine.html#a782fbc9eca00df10e4a204ae6da733e7a264572d66aed5373d19dc80c7cde1f46">SecondOrder</a> = 2
+, <a class="el" href="namespacegridfire_1_1engine.html#a782fbc9eca00df10e4a204ae6da733e7a3fc719e07f9f63e7f11a3d4fb74b476f">ThirdOrder</a> = 3
 , <br />
-&#160;&#160;<a class="el" href="#a782fbc9eca00df10e4a204ae6da733e7a100e3bf0197221c19b222badf42aa964">FourthOrder</a> = 4
-, <a class="el" href="#a782fbc9eca00df10e4a204ae6da733e7a5105376c2b90747e00bed5bf2953dd56">FifthOrder</a> = 5
+&#160;&#160;<a class="el" href="namespacegridfire_1_1engine.html#a782fbc9eca00df10e4a204ae6da733e7a100e3bf0197221c19b222badf42aa964">FourthOrder</a> = 4
+, <a class="el" href="namespacegridfire_1_1engine.html#a782fbc9eca00df10e4a204ae6da733e7a5105376c2b90747e00bed5bf2953dd56">FifthOrder</a> = 5
 <br />
  }</td></tr>
-<tr class="memdesc:a782fbc9eca00df10e4a204ae6da733e7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies supported depths for building the reaction network.  <a href="#a782fbc9eca00df10e4a204ae6da733e7">More...</a><br /></td></tr>
+<tr class="memdesc:a782fbc9eca00df10e4a204ae6da733e7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specifies supported depths for building the reaction network.  <a href="namespacegridfire_1_1engine.html#a782fbc9eca00df10e4a204ae6da733e7">More...</a><br /></td></tr>
 <tr class="separator:a782fbc9eca00df10e4a204ae6da733e7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5387db1ec0b039955487fbc4c0034854" id="r_a5387db1ec0b039955487fbc4c0034854"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5387db1ec0b039955487fbc4c0034854">EngineTypes</a> { <br />
-&#160;&#160;<a class="el" href="#a5387db1ec0b039955487fbc4c0034854a08ce7b1073452fc91801f941f131079f">GRAPH_ENGINE</a>
-, <a class="el" href="#a5387db1ec0b039955487fbc4c0034854aa07330e833c4faee6f5977cd87c733b6">ADAPTIVE_ENGINE_VIEW</a>
-, <a class="el" href="#a5387db1ec0b039955487fbc4c0034854a8bb7d6e738dfde400a8d022a3626c6d5">MULTISCALE_PARTITIONING_ENGINE_VIEW</a>
-, <a class="el" href="#a5387db1ec0b039955487fbc4c0034854a23901438f732b89f022567965207ad92">PRIMING_ENGINE_VIEW</a>
+<tr class="memitem:a5387db1ec0b039955487fbc4c0034854" id="r_a5387db1ec0b039955487fbc4c0034854"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#a5387db1ec0b039955487fbc4c0034854">EngineTypes</a> { <br />
+&#160;&#160;<a class="el" href="namespacegridfire_1_1engine.html#a5387db1ec0b039955487fbc4c0034854a08ce7b1073452fc91801f941f131079f">GRAPH_ENGINE</a>
+, <a class="el" href="namespacegridfire_1_1engine.html#a5387db1ec0b039955487fbc4c0034854aa07330e833c4faee6f5977cd87c733b6">ADAPTIVE_ENGINE_VIEW</a>
+, <a class="el" href="namespacegridfire_1_1engine.html#a5387db1ec0b039955487fbc4c0034854a8bb7d6e738dfde400a8d022a3626c6d5">MULTISCALE_PARTITIONING_ENGINE_VIEW</a>
+, <a class="el" href="namespacegridfire_1_1engine.html#a5387db1ec0b039955487fbc4c0034854a23901438f732b89f022567965207ad92">PRIMING_ENGINE_VIEW</a>
 , <br />
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-, <a class="el" href="#a5387db1ec0b039955487fbc4c0034854a048f6da02134ba0aedf95f8171611bf3">FILE_DEFINED_ENGINE_VIEW</a>
+&#160;&#160;<a class="el" href="namespacegridfire_1_1engine.html#a5387db1ec0b039955487fbc4c0034854a33b468ddf562923b7641ab60bb6aa708">DEFINED_ENGINE_VIEW</a>
+, <a class="el" href="namespacegridfire_1_1engine.html#a5387db1ec0b039955487fbc4c0034854a048f6da02134ba0aedf95f8171611bf3">FILE_DEFINED_ENGINE_VIEW</a>
 <br />
  }</td></tr>
-<tr class="memdesc:a5387db1ec0b039955487fbc4c0034854"><td class="mdescLeft">&#160;</td><td class="mdescRight">Enumeration of different engine types available in GridFire.  <a href="#a5387db1ec0b039955487fbc4c0034854">More...</a><br /></td></tr>
+<tr class="memdesc:a5387db1ec0b039955487fbc4c0034854"><td class="mdescLeft">&#160;</td><td class="mdescRight">Enumeration of different engine types available in GridFire.  <a href="namespacegridfire_1_1engine.html#a5387db1ec0b039955487fbc4c0034854">More...</a><br /></td></tr>
 <tr class="separator:a5387db1ec0b039955487fbc4c0034854"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ada706e6a92b733f6be85aa4425b135c1" id="r_ada706e6a92b733f6be85aa4425b135c1"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ada706e6a92b733f6be85aa4425b135c1">PrimingReportStatus</a> { <a class="el" href="#ada706e6a92b733f6be85aa4425b135c1ad0749aaba8b833466dfcbb0428e4f89c">SUCCESS</a>
-, <a class="el" href="#ada706e6a92b733f6be85aa4425b135c1aa79c9fd21a71b9db74af815d8fed8397">ALREADY_PRIMED</a>
-, <a class="el" href="#ada706e6a92b733f6be85aa4425b135c1afae3583994fb36fc9a5efcfe0a9b35c9">SOLVER_FAILURE</a>
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+, <a class="el" href="namespacegridfire_1_1engine.html#ada706e6a92b733f6be85aa4425b135c1aa79c9fd21a71b9db74af815d8fed8397">ALREADY_PRIMED</a>
+, <a class="el" href="namespacegridfire_1_1engine.html#ada706e6a92b733f6be85aa4425b135c1afae3583994fb36fc9a5efcfe0a9b35c9">SOLVER_FAILURE</a>
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-<tr class="memdesc:ada706e6a92b733f6be85aa4425b135c1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Enumerates outcome codes for a network priming operation.  <a href="#ada706e6a92b733f6be85aa4425b135c1">More...</a><br /></td></tr>
+<tr class="memdesc:ada706e6a92b733f6be85aa4425b135c1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Enumerates outcome codes for a network priming operation.  <a href="namespacegridfire_1_1engine.html#ada706e6a92b733f6be85aa4425b135c1">More...</a><br /></td></tr>
 <tr class="separator:ada706e6a92b733f6be85aa4425b135c1"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a83c9d755597668bba3cf00cd0ea10ee3" id="r_a83c9d755597668bba3cf00cd0ea10ee3"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a83c9d755597668bba3cf00cd0ea10ee3">SpeciesStatus</a> { <a class="el" href="#a83c9d755597668bba3cf00cd0ea10ee3a18ff74f43da410c5529f7d6fca84f115">ACTIVE</a>
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-, <a class="el" href="#a83c9d755597668bba3cf00cd0ea10ee3a898112b589038d0a221e6a3eae3ba64f">INACTIVE_FLOW</a>
-, <a class="el" href="#a83c9d755597668bba3cf00cd0ea10ee3a4b8e04af593e6ce16901570c52fe5607">NOT_PRESENT</a>
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+, <a class="el" href="namespacegridfire_1_1engine.html#a83c9d755597668bba3cf00cd0ea10ee3a07516dd4b4fea20466b56654d553549f">EQUILIBRIUM</a>
+, <a class="el" href="namespacegridfire_1_1engine.html#a83c9d755597668bba3cf00cd0ea10ee3a898112b589038d0a221e6a3eae3ba64f">INACTIVE_FLOW</a>
+, <a class="el" href="namespacegridfire_1_1engine.html#a83c9d755597668bba3cf00cd0ea10ee3a4b8e04af593e6ce16901570c52fe5607">NOT_PRESENT</a>
  }</td></tr>
-<tr class="memdesc:a83c9d755597668bba3cf00cd0ea10ee3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Enumerates the status of a species in the simulation.  <a href="#a83c9d755597668bba3cf00cd0ea10ee3">More...</a><br /></td></tr>
+<tr class="memdesc:a83c9d755597668bba3cf00cd0ea10ee3"><td class="mdescLeft">&#160;</td><td class="mdescRight">Enumerates the status of a species in the simulation.  <a href="namespacegridfire_1_1engine.html#a83c9d755597668bba3cf00cd0ea10ee3">More...</a><br /></td></tr>
 <tr class="separator:a83c9d755597668bba3cf00cd0ea10ee3"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:a006018e8e5f80ddb857009dbad962753" id="r_a006018e8e5f80ddb857009dbad962753"><td class="memItemLeft" align="right" valign="top">constexpr std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a006018e8e5f80ddb857009dbad962753">EngineStatus_to_string</a> (const <a class="el" href="#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> status)</td></tr>
-<tr class="memdesc:a006018e8e5f80ddb857009dbad962753"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert <a class="el" href="#a4d057e41b489bf20744dfa8d2958ad5a" title="Enumeration of possible engine statuses.">EngineStatus</a> enum to string representation.  <br /></td></tr>
+<tr class="memitem:a006018e8e5f80ddb857009dbad962753" id="r_a006018e8e5f80ddb857009dbad962753"><td class="memItemLeft" align="right" valign="top">constexpr std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#a006018e8e5f80ddb857009dbad962753">EngineStatus_to_string</a> (const <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a> status)</td></tr>
+<tr class="memdesc:a006018e8e5f80ddb857009dbad962753"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert EngineStatus enum to string representation.  <br /></td></tr>
 <tr class="separator:a006018e8e5f80ddb857009dbad962753"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a956ff12cef0dda2b9209ceab68199090" id="r_a956ff12cef0dda2b9209ceab68199090"><td class="memItemLeft" align="right" valign="top">constexpr auto&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a956ff12cef0dda2b9209ceab68199090">to_underlying</a> (<a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> f) noexcept</td></tr>
-<tr class="memdesc:a956ff12cef0dda2b9209ceab68199090"><td class="mdescLeft">&#160;</td><td class="mdescRight">Helper function to convert <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> to their underlying integer type.  <br /></td></tr>
+<tr class="memitem:a956ff12cef0dda2b9209ceab68199090" id="r_a956ff12cef0dda2b9209ceab68199090"><td class="memItemLeft" align="right" valign="top">constexpr auto&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#a956ff12cef0dda2b9209ceab68199090">to_underlying</a> (<a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> f) noexcept</td></tr>
+<tr class="memdesc:a956ff12cef0dda2b9209ceab68199090"><td class="mdescLeft">&#160;</td><td class="mdescRight">Helper function to convert NetworkConstructionFlags to their underlying integer type.  <br /></td></tr>
 <tr class="separator:a956ff12cef0dda2b9209ceab68199090"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a69216b717d99f53cf2d1419e23b69119" id="r_a69216b717d99f53cf2d1419e23b69119"><td class="memItemLeft" align="right" valign="top"><a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a69216b717d99f53cf2d1419e23b69119">operator|</a> (const <a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> lhs, const <a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> rhs)</td></tr>
-<tr class="memdesc:a69216b717d99f53cf2d1419e23b69119"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bitwise OR operator for <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a>.  <br /></td></tr>
+<tr class="memitem:a69216b717d99f53cf2d1419e23b69119" id="r_a69216b717d99f53cf2d1419e23b69119"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#a69216b717d99f53cf2d1419e23b69119">operator|</a> (const <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> lhs, const <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> rhs)</td></tr>
+<tr class="memdesc:a69216b717d99f53cf2d1419e23b69119"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bitwise OR operator for NetworkConstructionFlags.  <br /></td></tr>
 <tr class="separator:a69216b717d99f53cf2d1419e23b69119"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ace3a790fb57920fd12328fa9c5a3a1de" id="r_ace3a790fb57920fd12328fa9c5a3a1de"><td class="memItemLeft" align="right" valign="top"><a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ace3a790fb57920fd12328fa9c5a3a1de">operator&amp;</a> (const <a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> lhs, const <a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> rhs)</td></tr>
-<tr class="memdesc:ace3a790fb57920fd12328fa9c5a3a1de"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bitwise AND operator for <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a>.  <br /></td></tr>
+<tr class="memitem:ace3a790fb57920fd12328fa9c5a3a1de" id="r_ace3a790fb57920fd12328fa9c5a3a1de"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#ace3a790fb57920fd12328fa9c5a3a1de">operator&amp;</a> (const <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> lhs, const <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> rhs)</td></tr>
+<tr class="memdesc:ace3a790fb57920fd12328fa9c5a3a1de"><td class="mdescLeft">&#160;</td><td class="mdescRight">Bitwise AND operator for NetworkConstructionFlags.  <br /></td></tr>
 <tr class="separator:ace3a790fb57920fd12328fa9c5a3a1de"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7377e1152d165cfb9eadc16c5dc2f492" id="r_a7377e1152d165cfb9eadc16c5dc2f492"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7377e1152d165cfb9eadc16c5dc2f492">has_flag</a> (const <a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> flags, const <a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> flag_to_check)</td></tr>
-<tr class="memdesc:a7377e1152d165cfb9eadc16c5dc2f492"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a specific flag is set within a <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> value.  <br /></td></tr>
+<tr class="memitem:a7377e1152d165cfb9eadc16c5dc2f492" id="r_a7377e1152d165cfb9eadc16c5dc2f492"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#a7377e1152d165cfb9eadc16c5dc2f492">has_flag</a> (const <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> flags, const <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> flag_to_check)</td></tr>
+<tr class="memdesc:a7377e1152d165cfb9eadc16c5dc2f492"><td class="mdescLeft">&#160;</td><td class="mdescRight">Checks if a specific flag is set within a NetworkConstructionFlags value.  <br /></td></tr>
 <tr class="separator:a7377e1152d165cfb9eadc16c5dc2f492"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aea27cb9ed6d613ae9e4b7fa89767861a" id="r_aea27cb9ed6d613ae9e4b7fa89767861a"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aea27cb9ed6d613ae9e4b7fa89767861a">NetworkConstructionFlagsToString</a> (<a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> flags)</td></tr>
-<tr class="memdesc:aea27cb9ed6d613ae9e4b7fa89767861a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Converts <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> to a human-readable string.  <br /></td></tr>
+<tr class="memitem:aea27cb9ed6d613ae9e4b7fa89767861a" id="r_aea27cb9ed6d613ae9e4b7fa89767861a"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#aea27cb9ed6d613ae9e4b7fa89767861a">NetworkConstructionFlagsToString</a> (<a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> flags)</td></tr>
+<tr class="memdesc:aea27cb9ed6d613ae9e4b7fa89767861a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Converts NetworkConstructionFlags to a human-readable string.  <br /></td></tr>
 <tr class="separator:aea27cb9ed6d613ae9e4b7fa89767861a"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a7b64607db49cfc042cbee63be5351549" id="r_a7b64607db49cfc042cbee63be5351549"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">reaction::ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a7b64607db49cfc042cbee63be5351549">build_nuclear_network</a> (const fourdst::composition::CompositionAbstract &amp;composition, const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">rates::weak::WeakRateInterpolator</a> &amp;weakInterpolator, <a class="el" href="#a55cd7c313bbfafd5b6a1bcd6329ed99b">BuildDepthType</a> maxLayers=<a class="el" href="#a782fbc9eca00df10e4a204ae6da733e7abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a>, <a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> ReactionTypes=<a class="el" href="#a775506bb881280f73264db27cb8388f9a5b39c8b553c821e7cddc6da64b5bd2ee">NetworkConstructionFlags::DEFAULT</a>)</td></tr>
+<tr class="memitem:a7b64607db49cfc042cbee63be5351549" id="r_a7b64607db49cfc042cbee63be5351549"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#a7b64607db49cfc042cbee63be5351549">build_nuclear_network</a> (const fourdst::composition::CompositionAbstract &amp;composition, const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">rates::weak::WeakRateInterpolator</a> &amp;weakInterpolator, <a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">BuildDepthType</a> maxLayers=<a class="el" href="namespacegridfire_1_1engine.html#a782fbc9eca00df10e4a204ae6da733e7abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a>, <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> ReactionTypes=<a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9a5b39c8b553c821e7cddc6da64b5bd2ee">NetworkConstructionFlags::DEFAULT</a>)</td></tr>
 <tr class="memdesc:a7b64607db49cfc042cbee63be5351549"><td class="mdescLeft">&#160;</td><td class="mdescRight">Builds a nuclear reaction network from the Reaclib library based on an initial composition.  <br /></td></tr>
 <tr class="separator:a7b64607db49cfc042cbee63be5351549"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memitem:aa6552165b4b36ea227479567880d8402" id="r_aa6552165b4b36ea227479567880d8402"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html">PrimingReport</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#aa6552165b4b36ea227479567880d8402">primeNetwork</a> (const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;netIn, <a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a> &amp;engine, const std::optional&lt; std::vector&lt; <a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">reaction::ReactionType</a> &gt; &gt; &amp;ignoredReactionTypes)</td></tr>
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-<tr class="memdesc:a589015f6509c051c16b3e4ebc7550dd2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Converts an <a class="el" href="#a5387db1ec0b039955487fbc4c0034854" title="Enumeration of different engine types available in GridFire.">EngineTypes</a> enum value to its corresponding string representation.  <br /></td></tr>
+<tr class="memitem:a589015f6509c051c16b3e4ebc7550dd2" id="r_a589015f6509c051c16b3e4ebc7550dd2"><td class="memItemLeft" align="right" valign="top">constexpr std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#a589015f6509c051c16b3e4ebc7550dd2">engine_type_to_string</a> (const <a class="el" href="namespacegridfire_1_1engine.html#a5387db1ec0b039955487fbc4c0034854">EngineTypes</a> type)</td></tr>
+<tr class="memdesc:a589015f6509c051c16b3e4ebc7550dd2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Converts an EngineTypes enum value to its corresponding string representation.  <br /></td></tr>
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-<tr class="memitem:afacda3b01618f041a81fa516547564fa" id="r_afacda3b01618f041a81fa516547564fa"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html">NetworkJacobian</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afacda3b01618f041a81fa516547564fa">regularize_jacobian</a> (const <a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html">NetworkJacobian</a> &amp;jacobian, const fourdst::composition::CompositionAbstract &amp;comp, std::optional&lt; quill::Logger * &gt; logger=std::nullopt)</td></tr>
+<tr class="memitem:afacda3b01618f041a81fa516547564fa" id="r_afacda3b01618f041a81fa516547564fa"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#afacda3b01618f041a81fa516547564fa">regularize_jacobian</a> (const <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> &amp;jacobian, const fourdst::composition::CompositionAbstract &amp;comp, std::optional&lt; quill::Logger * &gt; logger=std::nullopt)</td></tr>
 <tr class="memdesc:afacda3b01618f041a81fa516547564fa"><td class="mdescLeft">&#160;</td><td class="mdescRight">Regularizes the given Jacobian matrix based on the provided composition.  <br /></td></tr>
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-<tr class="memdesc:a6d1bd8b2b8161b50a260bf012c3f058f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert a <a class="el" href="#a83c9d755597668bba3cf00cd0ea10ee3" title="Enumerates the status of a species in the simulation.">SpeciesStatus</a> enum value to its string representation.  <br /></td></tr>
+<tr class="memitem:a6d1bd8b2b8161b50a260bf012c3f058f" id="r_a6d1bd8b2b8161b50a260bf012c3f058f"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#a6d1bd8b2b8161b50a260bf012c3f058f">SpeciesStatus_to_string</a> (const <a class="el" href="namespacegridfire_1_1engine.html#a83c9d755597668bba3cf00cd0ea10ee3">SpeciesStatus</a> status)</td></tr>
+<tr class="memdesc:a6d1bd8b2b8161b50a260bf012c3f058f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Convert a SpeciesStatus enum value to its string representation.  <br /></td></tr>
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+<tr class="memitem:a47e94047d095f3ce8a3b12836e23604c" id="r_a47e94047d095f3ce8a3b12836e23604c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#a47e94047d095f3ce8a3b12836e23604c">regularize_jacobian</a> (const <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> &amp;jacobian, const fourdst::composition::CompositionAbstract &amp;comp, const std::optional&lt; quill::Logger * &gt; logger)</td></tr>
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 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="var-members" name="var-members"></a>
 Variables</h2></td></tr>
-<tr class="memitem:acbe76badc77637ba89e4017130d110b1" id="r_acbe76badc77637ba89e4017130d110b1"><td class="memItemLeft" align="right" valign="top">static constexpr double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#acbe76badc77637ba89e4017130d110b1">MIN_DENSITY_THRESHOLD</a> = 1e-18</td></tr>
+<tr class="memitem:acbe76badc77637ba89e4017130d110b1" id="r_acbe76badc77637ba89e4017130d110b1"><td class="memItemLeft" align="right" valign="top">static constexpr double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#acbe76badc77637ba89e4017130d110b1">MIN_DENSITY_THRESHOLD</a> = 1e-18</td></tr>
 <tr class="memdesc:acbe76badc77637ba89e4017130d110b1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimum density threshold below which reactions are ignored.  <br /></td></tr>
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-<tr class="memitem:a35ed65ea4d304098e4de3e0f0191304f" id="r_a35ed65ea4d304098e4de3e0f0191304f"><td class="memItemLeft" align="right" valign="top">static constexpr double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a35ed65ea4d304098e4de3e0f0191304f">MIN_ABUNDANCE_THRESHOLD</a> = 1e-18</td></tr>
+<tr class="memitem:a35ed65ea4d304098e4de3e0f0191304f" id="r_a35ed65ea4d304098e4de3e0f0191304f"><td class="memItemLeft" align="right" valign="top">static constexpr double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#a35ed65ea4d304098e4de3e0f0191304f">MIN_ABUNDANCE_THRESHOLD</a> = 1e-18</td></tr>
 <tr class="memdesc:a35ed65ea4d304098e4de3e0f0191304f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimum abundance threshold below which species are ignored.  <br /></td></tr>
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-<tr class="memitem:ad84c68dc3c04ab08a9dc8cee5fde28dd" id="r_ad84c68dc3c04ab08a9dc8cee5fde28dd"><td class="memItemLeft" align="right" valign="top">static constexpr double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad84c68dc3c04ab08a9dc8cee5fde28dd">MIN_JACOBIAN_THRESHOLD</a> = 1e-24</td></tr>
+<tr class="memitem:ad84c68dc3c04ab08a9dc8cee5fde28dd" id="r_ad84c68dc3c04ab08a9dc8cee5fde28dd"><td class="memItemLeft" align="right" valign="top">static constexpr double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#ad84c68dc3c04ab08a9dc8cee5fde28dd">MIN_JACOBIAN_THRESHOLD</a> = 1e-24</td></tr>
 <tr class="memdesc:ad84c68dc3c04ab08a9dc8cee5fde28dd"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimum value for Jacobian matrix entries.  <br /></td></tr>
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-<tr class="memitem:ae769a7e049c0b79e58675103b21f918f" id="r_ae769a7e049c0b79e58675103b21f918f"><td class="memItemLeft" align="right" valign="top">constexpr double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae769a7e049c0b79e58675103b21f918f">MIN_ABUNDANCE_TO_CONTRIBUTE_TO_JACOBIAN</a> = 1e-100</td></tr>
+<tr class="memitem:ae769a7e049c0b79e58675103b21f918f" id="r_ae769a7e049c0b79e58675103b21f918f"><td class="memItemLeft" align="right" valign="top">constexpr double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#ae769a7e049c0b79e58675103b21f918f">MIN_ABUNDANCE_TO_CONTRIBUTE_TO_JACOBIAN</a> = 1e-100</td></tr>
 <tr class="memdesc:ae769a7e049c0b79e58675103b21f918f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimum abundance for a species to contribute to the Jacobian.  <br /></td></tr>
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-<tr class="memitem:a1ec7640033e9b4418220e91f17bde16b" id="r_a1ec7640033e9b4418220e91f17bde16b"><td class="memItemLeft" align="right" valign="top">std::map&lt; <a class="el" href="#ada706e6a92b733f6be85aa4425b135c1">PrimingReportStatus</a>, std::string &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a1ec7640033e9b4418220e91f17bde16b">PrimingReportStatusStrings</a></td></tr>
-<tr class="memdesc:a1ec7640033e9b4418220e91f17bde16b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mapping from <a class="el" href="#ada706e6a92b733f6be85aa4425b135c1" title="Enumerates outcome codes for a network priming operation.">PrimingReportStatus</a> codes to human-readable strings.  <br /></td></tr>
+<tr class="memitem:a1ec7640033e9b4418220e91f17bde16b" id="r_a1ec7640033e9b4418220e91f17bde16b"><td class="memItemLeft" align="right" valign="top">std::map&lt; <a class="el" href="namespacegridfire_1_1engine.html#ada706e6a92b733f6be85aa4425b135c1">PrimingReportStatus</a>, std::string &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine.html#a1ec7640033e9b4418220e91f17bde16b">PrimingReportStatusStrings</a></td></tr>
+<tr class="memdesc:a1ec7640033e9b4418220e91f17bde16b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mapping from PrimingReportStatus codes to human-readable strings.  <br /></td></tr>
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 <h2 class="groupheader">Typedef Documentation</h2>
@@ -310,7 +298,7 @@ Variables</h2></td></tr>
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-          <td class="memname">typedef CppAD::AD&lt;double&gt; <a class="el" href="#a4562b782e8096986a9b0cc95aa8c1c02">gridfire::engine::ADDouble</a></td>
+          <td class="memname">typedef CppAD::AD&lt;double&gt; <a class="el" href="namespacegridfire_1_1engine.html#a4562b782e8096986a9b0cc95aa8c1c02">gridfire::engine::ADDouble</a></td>
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@@ -320,32 +308,32 @@ Variables</h2></td></tr>
 
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-<a id="a55cd7c313bbfafd5b6a1bcd6329ed99b" name="a55cd7c313bbfafd5b6a1bcd6329ed99b"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a55cd7c313bbfafd5b6a1bcd6329ed99b">&#9670;&#160;</a></span>BuildDepthType</h2>
+<a id="a540b6420c7b6271717ec9b640140f6c0" name="a540b6420c7b6271717ec9b640140f6c0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a540b6420c7b6271717ec9b640140f6c0">&#9670;&#160;</a></span>BuildDepthType</h2>
 
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-          <td class="memname">using <a class="el" href="#a55cd7c313bbfafd5b6a1bcd6329ed99b">gridfire::engine::BuildDepthType</a> = std::variant&lt;<a class="el" href="#a782fbc9eca00df10e4a204ae6da733e7">NetworkBuildDepth</a>, int&gt;</td>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">gridfire::engine::BuildDepthType</a></td>
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-<p>Variant specifying either a predefined <a class="el" href="#a782fbc9eca00df10e4a204ae6da733e7" title="Specifies supported depths for building the reaction network.">NetworkBuildDepth</a> or a custom integer depth. </p>
+<p>Variant specifying either a predefined NetworkBuildDepth or a custom integer depth. </p>
 <dl class="section pre"><dt>Precondition</dt><dd>If using the integer alternative, the value must be &gt;= 0 or -1 to indicate a full build. </dd></dl>
 <dl class="section post"><dt>Postcondition</dt><dd>The network builder will interpret and apply the specified depth to control reaction expansion. </dd></dl>
 
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-<h2 class="memtitle"><span class="permalink"><a href="#aa7b127f4fe99188e3d94ff11608d54f0">&#9670;&#160;</a></span>JacobianEntry</h2>
+<a id="ac7974616b5fd465c4a42e3d882cdde6e" name="ac7974616b5fd465c4a42e3d882cdde6e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac7974616b5fd465c4a42e3d882cdde6e">&#9670;&#160;</a></span>JacobianEntry</h2>
 
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-          <td class="memname">using <a class="el" href="#aa7b127f4fe99188e3d94ff11608d54f0">gridfire::engine::JacobianEntry</a> = std::pair&lt;std::pair&lt;fourdst::atomic::Species, fourdst::atomic::Species&gt;, double&gt;</td>
+          <td class="memname">using <a class="el" href="namespacegridfire_1_1engine.html#ac7974616b5fd465c4a42e3d882cdde6e">gridfire::engine::JacobianEntry</a> = typedef std::pair&lt;std::pair&lt;fourdst::atomic::Species, fourdst::atomic::Species&gt;, double&gt;</td>
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@@ -354,14 +342,14 @@ Variables</h2></td></tr>
 
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-<a id="a9de1791ec719c0a9b76b835703336870" name="a9de1791ec719c0a9b76b835703336870"></a>
-<h2 class="memtitle"><span class="permalink"><a href="#a9de1791ec719c0a9b76b835703336870">&#9670;&#160;</a></span>SparsityPattern</h2>
+<a id="af5175018d2d1e78a8826dd33ec6d675f" name="af5175018d2d1e78a8826dd33ec6d675f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af5175018d2d1e78a8826dd33ec6d675f">&#9670;&#160;</a></span>SparsityPattern</h2>
 
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-          <td class="memname">using <a class="el" href="#a9de1791ec719c0a9b76b835703336870">gridfire::engine::SparsityPattern</a> = std::vector&lt;std::pair&lt;size_t, size_t&gt;&gt;</td>
+          <td class="memname">using <a class="el" href="namespacegridfire_1_1engine.html#af5175018d2d1e78a8826dd33ec6d675f">gridfire::engine::SparsityPattern</a> = typedef std::vector&lt;std::pair&lt;size_t, size_t&gt; &gt;</td>
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@@ -381,12 +369,12 @@ Variables</h2></td></tr>
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-          <td class="memname">enum class <a class="el" href="#a4d057e41b489bf20744dfa8d2958ad5a">gridfire::engine::EngineStatus</a></td>
+          <td class="memname">enum class <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">gridfire::engine::EngineStatus</a></td>
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-          <td class="memname">enum class <a class="el" href="#a5387db1ec0b039955487fbc4c0034854">gridfire::engine::EngineTypes</a></td>
+          <td class="memname">enum class <a class="el" href="namespacegridfire_1_1engine.html#a5387db1ec0b039955487fbc4c0034854">gridfire::engine::EngineTypes</a></td>
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-          <td class="memname">enum class <a class="el" href="#a782fbc9eca00df10e4a204ae6da733e7">gridfire::engine::NetworkBuildDepth</a></td>
+          <td class="memname">enum class <a class="el" href="namespacegridfire_1_1engine.html#a782fbc9eca00df10e4a204ae6da733e7">gridfire::engine::NetworkBuildDepth</a></td>
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@@ -471,7 +459,7 @@ Variables</h2></td></tr>
 <li>FourthOrder: Include reactions up to fourth order (depth = 4).</li>
 <li>FifthOrder: Include reactions up to fifth order (depth = 5).</li>
 </ul>
-<dl class="section note"><dt>Note</dt><dd>For custom build depths, see <a class="el" href="#a55cd7c313bbfafd5b6a1bcd6329ed99b" title="Variant specifying either a predefined NetworkBuildDepth or a custom integer depth.">BuildDepthType</a>. </dd></dl>
+<dl class="section note"><dt>Note</dt><dd>For custom build depths, see BuildDepthType. </dd></dl>
 <table class="fieldtable">
 <tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><a id="a782fbc9eca00df10e4a204ae6da733e7abbd47109890259c0127154db1af26c75" name="a782fbc9eca00df10e4a204ae6da733e7abbd47109890259c0127154db1af26c75"></a>Full&#160;</td><td class="fielddoc"></td></tr>
 <tr><td class="fieldname"><a id="a782fbc9eca00df10e4a204ae6da733e7a928d0f1285ee7d36c1c2fa1b1b7a164c" name="a782fbc9eca00df10e4a204ae6da733e7a928d0f1285ee7d36c1c2fa1b1b7a164c"></a>Shallow&#160;</td><td class="fielddoc"></td></tr>
@@ -493,12 +481,12 @@ Variables</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">enum class <a class="el" href="#a775506bb881280f73264db27cb8388f9">gridfire::engine::NetworkConstructionFlags</a> : uint32_t</td>
+          <td class="memname">enum class <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">gridfire::engine::NetworkConstructionFlags</a> : uint32_t</td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel strong">strong</span></span>  </td>
+<span class="mlabels"><span class="mlabel">strong</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -530,12 +518,12 @@ Variables</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">enum class <a class="el" href="#ada706e6a92b733f6be85aa4425b135c1">gridfire::engine::PrimingReportStatus</a></td>
+          <td class="memname">enum class <a class="el" href="namespacegridfire_1_1engine.html#ada706e6a92b733f6be85aa4425b135c1">gridfire::engine::PrimingReportStatus</a></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel strong">strong</span></span>  </td>
+<span class="mlabels"><span class="mlabel">strong</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -550,7 +538,7 @@ Variables</h2></td></tr>
 <li>FAILED_TO_FIND_PRIMING_REACTIONS: No reactions containing the priming species were found.</li>
 <li>BASE_NETWORK_TOO_SHALLOW: The provided base network depth was insufficient for priming.</li>
 </ul>
-<dl class="section see"><dt>See also</dt><dd><a class="el" href="structgridfire_1_1engine_1_1_priming_report.html" title="Captures the result of a network priming operation.">PrimingReport</a> for data associated with each status. </dd></dl>
+<dl class="section see"><dt>See also</dt><dd><a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html" title="Captures the result of a network priming operation.">PrimingReport</a> for data associated with each status. </dd></dl>
 <table class="fieldtable">
 <tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><a id="ada706e6a92b733f6be85aa4425b135c1ad0749aaba8b833466dfcbb0428e4f89c" name="ada706e6a92b733f6be85aa4425b135c1ad0749aaba8b833466dfcbb0428e4f89c"></a>SUCCESS&#160;</td><td class="fielddoc"></td></tr>
 <tr><td class="fieldname"><a id="ada706e6a92b733f6be85aa4425b135c1aa79c9fd21a71b9db74af815d8fed8397" name="ada706e6a92b733f6be85aa4425b135c1aa79c9fd21a71b9db74af815d8fed8397"></a>ALREADY_PRIMED&#160;</td><td class="fielddoc"></td></tr>
@@ -569,12 +557,12 @@ Variables</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">enum class <a class="el" href="#a83c9d755597668bba3cf00cd0ea10ee3">gridfire::engine::SpeciesStatus</a></td>
+          <td class="memname">enum class <a class="el" href="namespacegridfire_1_1engine.html#a83c9d755597668bba3cf00cd0ea10ee3">gridfire::engine::SpeciesStatus</a></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel strong">strong</span></span>  </td>
+<span class="mlabels"><span class="mlabel">strong</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -603,24 +591,33 @@ Variables</h2></td></tr>
 <div class="memproto">
       <table class="memname">
         <tr>
-          <td class="memname"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> gridfire::engine::build_nuclear_network </td>
+          <td class="memname"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> gridfire::engine::build_nuclear_network </td>
           <td>(</td>
-          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;</td>          <td class="paramname"><span class="paramname"><em>composition</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>composition</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">rates::weak::WeakRateInterpolator</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>weakInterpolator</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">rates::weak::WeakRateInterpolator</a> &amp;&#160;</td>
+          <td class="paramname"><em>weakInterpolator</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype"><a class="el" href="#a55cd7c313bbfafd5b6a1bcd6329ed99b">BuildDepthType</a></td>          <td class="paramname"><span class="paramname"><em>maxLayers</em></span><span class="paramdefsep"> = </span><span class="paramdefval"><a class="el" href="#a782fbc9eca00df10e4a204ae6da733e7abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a></span>, </td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">BuildDepthType</a>&#160;</td>
+          <td class="paramname"><em>maxLayers</em> = <code><a class="el" href="namespacegridfire_1_1engine.html#a782fbc9eca00df10e4a204ae6da733e7abbd47109890259c0127154db1af26c75">NetworkBuildDepth::Full</a></code>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype"><a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a></td>          <td class="paramname"><span class="paramname"><em>ReactionTypes</em></span><span class="paramdefsep"> = </span><span class="paramdefval"><a class="el" href="#a775506bb881280f73264db27cb8388f9a5b39c8b553c821e7cddc6da64b5bd2ee">NetworkConstructionFlags::DEFAULT</a></span>&#160;)</td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a>&#160;</td>
+          <td class="paramname"><em>ReactionTypes</em> = <code><a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9a5b39c8b553c821e7cddc6da64b5bd2ee">NetworkConstructionFlags::DEFAULT</a></code>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -632,7 +629,7 @@ Variables</h2></td></tr>
   <table class="params">
     <tr><td class="paramname">composition</td><td>Mapping of isotopic species to their mass fractions; species with positive mass fraction seed the network. </td></tr>
     <tr><td class="paramname">weakInterpolator</td><td>Interpolator to build weak rates from. Must be constructed and owned by the caller. </td></tr>
-    <tr><td class="paramname">maxLayers</td><td>Variant specifying either a predefined <a class="el" href="#a782fbc9eca00df10e4a204ae6da733e7" title="Specifies supported depths for building the reaction network.">NetworkBuildDepth</a> or a custom integer depth; negative depth (Full) collects all reactions, zero is invalid. </td></tr>
+    <tr><td class="paramname">maxLayers</td><td>Variant specifying either a predefined NetworkBuildDepth or a custom integer depth; negative depth (Full) collects all reactions, zero is invalid. </td></tr>
     <tr><td class="paramname">ReactionTypes</td><td></td></tr>
   </table>
   </dd>
@@ -661,23 +658,24 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">std::string_view gridfire::engine::engine_type_to_string </td>
+          <td class="memname">constexpr std::string_view gridfire::engine::engine_type_to_string </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="#a5387db1ec0b039955487fbc4c0034854">EngineTypes</a></td>          <td class="paramname"><span class="paramname"><em>type</em></span></td><td>)</td>
+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1engine.html#a5387db1ec0b039955487fbc4c0034854">EngineTypes</a>&#160;</td>
+          <td class="paramname"><em>type</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel constexpr">constexpr</span></span>  </td>
+<span class="mlabels"><span class="mlabel">constexpr</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Converts an <a class="el" href="#a5387db1ec0b039955487fbc4c0034854" title="Enumeration of different engine types available in GridFire.">EngineTypes</a> enum value to its corresponding string representation. </p>
+<p>Converts an EngineTypes enum value to its corresponding string representation. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">type</td><td>The <a class="el" href="#a5387db1ec0b039955487fbc4c0034854" title="Enumeration of different engine types available in GridFire.">EngineTypes</a> enum value to convert. </td></tr>
+    <tr><td class="paramname">type</td><td>The EngineTypes enum value to convert. </td></tr>
   </table>
   </dd>
 </dl>
@@ -695,27 +693,28 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">std::string_view gridfire::engine::EngineStatus_to_string </td>
+          <td class="memname">constexpr std::string_view gridfire::engine::EngineStatus_to_string </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a></td>          <td class="paramname"><span class="paramname"><em>status</em></span></td><td>)</td>
+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a">EngineStatus</a>&#160;</td>
+          <td class="paramname"><em>status</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel constexpr">constexpr</span></span>  </td>
+<span class="mlabels"><span class="mlabel">constexpr</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Convert <a class="el" href="#a4d057e41b489bf20744dfa8d2958ad5a" title="Enumeration of possible engine statuses.">EngineStatus</a> enum to string representation. </p>
+<p>Convert EngineStatus enum to string representation. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">status</td><td>The <a class="el" href="#a4d057e41b489bf20744dfa8d2958ad5a" title="Enumeration of possible engine statuses.">EngineStatus</a> value to convert. </td></tr>
+    <tr><td class="paramname">status</td><td>The EngineStatus value to convert. </td></tr>
   </table>
   </dd>
 </dl>
-<dl class="section return"><dt>Returns</dt><dd>A string_view representing the name of the <a class="el" href="#a4d057e41b489bf20744dfa8d2958ad5a" title="Enumeration of possible engine statuses.">EngineStatus</a>. </dd></dl>
+<dl class="section return"><dt>Returns</dt><dd>A string_view representing the name of the EngineStatus. </dd></dl>
 
 </div>
 </div>
@@ -731,26 +730,33 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
         <tr>
           <td class="memname">bool gridfire::engine::has_flag </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a></td>          <td class="paramname"><span class="paramname"><em>flags</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a>&#160;</td>
+          <td class="paramname"><em>flags</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const <a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a></td>          <td class="paramname"><span class="paramname"><em>flag_to_check</em></span>&#160;)</td>
+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a>&#160;</td>
+          <td class="paramname"><em>flag_to_check</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Checks if a specific flag is set within a <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> value. </p>
-<p>This function determines whether a particular flag is present in a given <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> value.</p>
+<p>Checks if a specific flag is set within a NetworkConstructionFlags value. </p>
+<p>This function determines whether a particular flag is present in a given NetworkConstructionFlags value.</p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">flags</td><td>The <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> value to check. </td></tr>
+    <tr><td class="paramname">flags</td><td>The NetworkConstructionFlags value to check. </td></tr>
     <tr><td class="paramname">flag_to_check</td><td>The specific flag to look for. </td></tr>
   </table>
   </dd>
@@ -771,22 +777,23 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
         <tr>
           <td class="memname">std::string gridfire::engine::NetworkConstructionFlagsToString </td>
           <td>(</td>
-          <td class="paramtype"><a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a></td>          <td class="paramname"><span class="paramname"><em>flags</em></span></td><td>)</td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a>&#160;</td>
+          <td class="paramname"><em>flags</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Converts <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> to a human-readable string. </p>
-<p>This function generates a comma-separated string representation of the set flags within a <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> value. If no flags are set, it returns "No reactions".</p>
+<p>Converts NetworkConstructionFlags to a human-readable string. </p>
+<p>This function generates a comma-separated string representation of the set flags within a NetworkConstructionFlags value. If no flags are set, it returns "No reactions".</p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">flags</td><td>The <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> value to convert. </td></tr>
+    <tr><td class="paramname">flags</td><td>The NetworkConstructionFlags value to convert. </td></tr>
   </table>
   </dd>
 </dl>
@@ -804,33 +811,40 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname"><a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> gridfire::engine::operator&amp; </td>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> gridfire::engine::operator&amp; </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a></td>          <td class="paramname"><span class="paramname"><em>lhs</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a>&#160;</td>
+          <td class="paramname"><em>lhs</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const <a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a></td>          <td class="paramname"><span class="paramname"><em>rhs</em></span>&#160;)</td>
+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a>&#160;</td>
+          <td class="paramname"><em>rhs</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Bitwise AND operator for <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a>. </p>
-<p>This operator allows checking for common flags between two <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> values using the bitwise AND operation.</p>
+<p>Bitwise AND operator for NetworkConstructionFlags. </p>
+<p>This operator allows checking for common flags between two NetworkConstructionFlags values using the bitwise AND operation.</p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">lhs</td><td>The left-hand side <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> value. </td></tr>
-    <tr><td class="paramname">rhs</td><td>The right-hand side <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> value. </td></tr>
+    <tr><td class="paramname">lhs</td><td>The left-hand side NetworkConstructionFlags value. </td></tr>
+    <tr><td class="paramname">rhs</td><td>The right-hand side NetworkConstructionFlags value. </td></tr>
   </table>
   </dd>
 </dl>
-<dl class="section return"><dt>Returns</dt><dd>A new <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> value representing the intersection of the two inputs. </dd></dl>
+<dl class="section return"><dt>Returns</dt><dd>A new NetworkConstructionFlags value representing the intersection of the two inputs. </dd></dl>
 
 </div>
 </div>
@@ -844,33 +858,40 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname"><a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> gridfire::engine::operator| </td>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a> gridfire::engine::operator| </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a></td>          <td class="paramname"><span class="paramname"><em>lhs</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a>&#160;</td>
+          <td class="paramname"><em>lhs</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const <a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a></td>          <td class="paramname"><span class="paramname"><em>rhs</em></span>&#160;)</td>
+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a>&#160;</td>
+          <td class="paramname"><em>rhs</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Bitwise OR operator for <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a>. </p>
-<p>This operator allows combining two <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> values using the bitwise OR operation.</p>
+<p>Bitwise OR operator for NetworkConstructionFlags. </p>
+<p>This operator allows combining two NetworkConstructionFlags values using the bitwise OR operation.</p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">lhs</td><td>The left-hand side <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> value. </td></tr>
-    <tr><td class="paramname">rhs</td><td>The right-hand side <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> value. </td></tr>
+    <tr><td class="paramname">lhs</td><td>The left-hand side NetworkConstructionFlags value. </td></tr>
+    <tr><td class="paramname">rhs</td><td>The right-hand side NetworkConstructionFlags value. </td></tr>
   </table>
   </dd>
 </dl>
-<dl class="section return"><dt>Returns</dt><dd>A new <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> value representing the combination of the two inputs. </dd></dl>
+<dl class="section return"><dt>Returns</dt><dd>A new NetworkConstructionFlags value representing the combination of the two inputs. </dd></dl>
 
 </div>
 </div>
@@ -881,19 +902,27 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
 <div class="memproto">
       <table class="memname">
         <tr>
-          <td class="memname"><a class="el" href="structgridfire_1_1engine_1_1_priming_report.html">PrimingReport</a> gridfire::engine::primeNetwork </td>
+          <td class="memname"><a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html">PrimingReport</a> gridfire::engine::primeNetwork </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="structgridfire_1_1_net_in.html">NetIn</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>netIn</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1NetIn.html">NetIn</a> &amp;&#160;</td>
+          <td class="paramname"><em>netIn</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype"><a class="el" href="classgridfire_1_1engine_1_1_graph_engine.html">GraphEngine</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>engine</em></span>, </td>
+          <td class="paramtype"><a class="el" href="classgridfire_1_1engine_1_1GraphEngine.html">GraphEngine</a> &amp;&#160;</td>
+          <td class="paramname"><em>engine</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::optional&lt; std::vector&lt; <a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">reaction::ReactionType</a> &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>ignoredReactionTypes</em></span>&#160;)</td>
+          <td class="paramtype">const std::optional&lt; std::vector&lt; <a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">reaction::ReactionType</a> &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>ignoredReactionTypes</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -904,14 +933,14 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
     <tr><td class="paramname">netIn</td><td>Input network data containing initial composition, temperature, and density. </td></tr>
-    <tr><td class="paramname">engine</td><td><a class="el" href="classgridfire_1_1engine_1_1_dynamic_engine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> used to build and evaluate the reaction network. </td></tr>
+    <tr><td class="paramname">engine</td><td><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> used to build and evaluate the reaction network. </td></tr>
     <tr><td class="paramname">ignoredReactionTypes</td><td>Types of reactions to ignore during priming (e.g., weak reactions). </td></tr>
   </table>
   </dd>
 </dl>
 <dl class="section pre"><dt>Precondition</dt><dd>netIn.composition defines species and their mass fractions; engine is constructed with a valid network. </dd></dl>
 <dl class="section post"><dt>Postcondition</dt><dd>engine.networkReactions restored to its initial state; returned report contains primedComposition, massFractionChanges for each species, success flag, and status code. </dd></dl>
-<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1engine_1_1_priming_report.html" title="Captures the result of a network priming operation.">PrimingReport</a> encapsulating the results of the priming operation. </dd></dl>
+<dl class="section return"><dt>Returns</dt><dd><a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html" title="Captures the result of a network priming operation.">PrimingReport</a> encapsulating the results of the priming operation. </dd></dl>
 
 </div>
 </div>
@@ -922,19 +951,27 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
 <div class="memproto">
       <table class="memname">
         <tr>
-          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html">NetworkJacobian</a> gridfire::engine::regularize_jacobian </td>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> gridfire::engine::regularize_jacobian </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html">NetworkJacobian</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>jacobian</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> &amp;&#160;</td>
+          <td class="paramname"><em>jacobian</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::optional&lt; quill::Logger * &gt;</td>          <td class="paramname"><span class="paramname"><em>logger</em></span>&#160;)</td>
+          <td class="paramtype">const std::optional&lt; quill::Logger * &gt;&#160;</td>
+          <td class="paramname"><em>logger</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -948,19 +985,27 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
 <div class="memproto">
       <table class="memname">
         <tr>
-          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html">NetworkJacobian</a> gridfire::engine::regularize_jacobian </td>
+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> gridfire::engine::regularize_jacobian </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html">NetworkJacobian</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>jacobian</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> &amp;&#160;</td>
+          <td class="paramname"><em>jacobian</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::CompositionAbstract &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">std::optional&lt; quill::Logger * &gt;</td>          <td class="paramname"><span class="paramname"><em>logger</em></span><span class="paramdefsep"> = </span><span class="paramdefval">std::nullopt</span>&#160;)</td>
+          <td class="paramtype">std::optional&lt; quill::Logger * &gt;&#160;</td>
+          <td class="paramname"><em>logger</em> = <code>std::nullopt</code>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -969,13 +1014,13 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
 <p>This function applies regularization techniques to the Jacobian matrix to improve its numerical stability. Specifically any (row, column) entries corresponding to species who's abundance is below a threshold of MIN_ABUNDANCE_TO_CONTRIBUTE_TO_JACOBIAN in the provided composition will be set to zero if those entries were either infinite or NaN.</p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">jacobian</td><td>The <a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html" title="A wrapper class for handling the network Jacobian matrix.">NetworkJacobian</a> to be regularized. </td></tr>
+    <tr><td class="paramname">jacobian</td><td>The <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html" title="A wrapper class for handling the network Jacobian matrix.">NetworkJacobian</a> to be regularized. </td></tr>
     <tr><td class="paramname">comp</td><td>The composition used for regularization. </td></tr>
     <tr><td class="paramname">logger</td><td>Optional logger for logging regularization steps and information. </td></tr>
   </table>
   </dd>
 </dl>
-<dl class="section return"><dt>Returns</dt><dd>A new <a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html" title="A wrapper class for handling the network Jacobian matrix.">NetworkJacobian</a> instance representing the regularized Jacobian matrix. </dd></dl>
+<dl class="section return"><dt>Returns</dt><dd>A new <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html" title="A wrapper class for handling the network Jacobian matrix.">NetworkJacobian</a> instance representing the regularized Jacobian matrix. </dd></dl>
 
 </div>
 </div>
@@ -991,25 +1036,26 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
         <tr>
           <td class="memname">std::string gridfire::engine::SpeciesStatus_to_string </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="#a83c9d755597668bba3cf00cd0ea10ee3">SpeciesStatus</a></td>          <td class="paramname"><span class="paramname"><em>status</em></span></td><td>)</td>
+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1engine.html#a83c9d755597668bba3cf00cd0ea10ee3">SpeciesStatus</a>&#160;</td>
+          <td class="paramname"><em>status</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Convert a <a class="el" href="#a83c9d755597668bba3cf00cd0ea10ee3" title="Enumerates the status of a species in the simulation.">SpeciesStatus</a> enum value to its string representation. </p>
+<p>Convert a SpeciesStatus enum value to its string representation. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">status</td><td>The <a class="el" href="#a83c9d755597668bba3cf00cd0ea10ee3" title="Enumerates the status of a species in the simulation.">SpeciesStatus</a> value to convert. </td></tr>
+    <tr><td class="paramname">status</td><td>The SpeciesStatus value to convert. </td></tr>
   </table>
   </dd>
 </dl>
-<dl class="section return"><dt>Returns</dt><dd>A string representing the <a class="el" href="#a83c9d755597668bba3cf00cd0ea10ee3" title="Enumerates the status of a species in the simulation.">SpeciesStatus</a>. </dd></dl>
+<dl class="section return"><dt>Returns</dt><dd>A string representing the SpeciesStatus. </dd></dl>
 
 </div>
 </div>
@@ -1023,24 +1069,25 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">auto gridfire::engine::to_underlying </td>
+          <td class="memname">constexpr auto gridfire::engine::to_underlying </td>
           <td>(</td>
-          <td class="paramtype"><a class="el" href="#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a></td>          <td class="paramname"><span class="paramname"><em>f</em></span></td><td>)</td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1engine.html#a775506bb881280f73264db27cb8388f9">NetworkConstructionFlags</a>&#160;</td>
+          <td class="paramname"><em>f</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel constexpr">constexpr</span><span class="mlabel noexcept">noexcept</span></span>  </td>
+<span class="mlabels"><span class="mlabel">constexpr</span><span class="mlabel">noexcept</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 
-<p>Helper function to convert <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> to their underlying integer type. </p>
-<p>This function facilitates bitwise operations on <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> by converting them to their underlying integer representation.</p>
+<p>Helper function to convert NetworkConstructionFlags to their underlying integer type. </p>
+<p>This function facilitates bitwise operations on NetworkConstructionFlags by converting them to their underlying integer representation.</p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">f</td><td>The <a class="el" href="#a775506bb881280f73264db27cb8388f9" title="Flags to specify which types of nuclear reactions to include when constructing a reaction network.">NetworkConstructionFlags</a> value to convert. </td></tr>
+    <tr><td class="paramname">f</td><td>The NetworkConstructionFlags value to convert. </td></tr>
   </table>
   </dd>
 </dl>
@@ -1059,12 +1106,12 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">double gridfire::engine::MIN_ABUNDANCE_THRESHOLD = 1e-18</td>
+          <td class="memname">constexpr double gridfire::engine::MIN_ABUNDANCE_THRESHOLD = 1e-18</td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel static">static</span><span class="mlabel constexpr">constexpr</span></span>  </td>
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">constexpr</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -1084,12 +1131,12 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">double gridfire::engine::MIN_ABUNDANCE_TO_CONTRIBUTE_TO_JACOBIAN = 1e-100</td>
+          <td class="memname">constexpr double gridfire::engine::MIN_ABUNDANCE_TO_CONTRIBUTE_TO_JACOBIAN = 1e-100</td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel constexpr">constexpr</span></span>  </td>
+<span class="mlabels"><span class="mlabel">constexpr</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -1108,12 +1155,12 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">double gridfire::engine::MIN_DENSITY_THRESHOLD = 1e-18</td>
+          <td class="memname">constexpr double gridfire::engine::MIN_DENSITY_THRESHOLD = 1e-18</td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel static">static</span><span class="mlabel constexpr">constexpr</span></span>  </td>
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">constexpr</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -1133,12 +1180,12 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">double gridfire::engine::MIN_JACOBIAN_THRESHOLD = 1e-24</td>
+          <td class="memname">constexpr double gridfire::engine::MIN_JACOBIAN_THRESHOLD = 1e-24</td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel static">static</span><span class="mlabel constexpr">constexpr</span></span>  </td>
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">constexpr</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -1158,26 +1205,23 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">std::map&lt;<a class="el" href="#ada706e6a92b733f6be85aa4425b135c1">PrimingReportStatus</a>, std::string&gt; gridfire::engine::PrimingReportStatusStrings</td>
+          <td class="memname">std::map&lt;<a class="el" href="namespacegridfire_1_1engine.html#ada706e6a92b733f6be85aa4425b135c1">PrimingReportStatus</a>, std::string&gt; gridfire::engine::PrimingReportStatusStrings</td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 <b>Initial value:</b><div class="fragment"><div class="line">= {</div>
-<div class="line">        {<a class="code hl_enumvalue" href="#ada706e6a92b733f6be85aa4425b135c1ad0749aaba8b833466dfcbb0428e4f89c">PrimingReportStatus::SUCCESS</a>, <span class="stringliteral">&quot;SUCCESS&quot;</span>},</div>
-<div class="line">        {<a class="code hl_enumvalue" href="#ada706e6a92b733f6be85aa4425b135c1afae3583994fb36fc9a5efcfe0a9b35c9">PrimingReportStatus::SOLVER_FAILURE</a>, <span class="stringliteral">&quot;SOLVER_FAILURE&quot;</span>},</div>
-<div class="line">        {<a class="code hl_enumvalue" href="#ada706e6a92b733f6be85aa4425b135c1aa79c9fd21a71b9db74af815d8fed8397">PrimingReportStatus::ALREADY_PRIMED</a>, <span class="stringliteral">&quot;ALREADY_PRIMED&quot;</span>},</div>
+<div class="line">        {PrimingReportStatus::SUCCESS, <span class="stringliteral">&quot;SUCCESS&quot;</span>},</div>
+<div class="line">        {PrimingReportStatus::SOLVER_FAILURE, <span class="stringliteral">&quot;SOLVER_FAILURE&quot;</span>},</div>
+<div class="line">        {PrimingReportStatus::ALREADY_PRIMED, <span class="stringliteral">&quot;ALREADY_PRIMED&quot;</span>},</div>
 <div class="line">    }</div>
-<div class="ttc" id="anamespacegridfire_1_1engine_html_ada706e6a92b733f6be85aa4425b135c1aa79c9fd21a71b9db74af815d8fed8397"><div class="ttname"><a href="#ada706e6a92b733f6be85aa4425b135c1aa79c9fd21a71b9db74af815d8fed8397">gridfire::engine::PrimingReportStatus::ALREADY_PRIMED</a></div><div class="ttdeci">@ ALREADY_PRIMED</div><div class="ttdef"><b>Definition</b> reporting.h:28</div></div>
-<div class="ttc" id="anamespacegridfire_1_1engine_html_ada706e6a92b733f6be85aa4425b135c1ad0749aaba8b833466dfcbb0428e4f89c"><div class="ttname"><a href="#ada706e6a92b733f6be85aa4425b135c1ad0749aaba8b833466dfcbb0428e4f89c">gridfire::engine::PrimingReportStatus::SUCCESS</a></div><div class="ttdeci">@ SUCCESS</div><div class="ttdef"><b>Definition</b> reporting.h:27</div></div>
-<div class="ttc" id="anamespacegridfire_1_1engine_html_ada706e6a92b733f6be85aa4425b135c1afae3583994fb36fc9a5efcfe0a9b35c9"><div class="ttname"><a href="#ada706e6a92b733f6be85aa4425b135c1afae3583994fb36fc9a5efcfe0a9b35c9">gridfire::engine::PrimingReportStatus::SOLVER_FAILURE</a></div><div class="ttdeci">@ SOLVER_FAILURE</div><div class="ttdef"><b>Definition</b> reporting.h:29</div></div>
 </div><!-- fragment -->
-<p>Mapping from <a class="el" href="#ada706e6a92b733f6be85aa4425b135c1" title="Enumerates outcome codes for a network priming operation.">PrimingReportStatus</a> codes to human-readable strings. </p>
-<p>Used when formatting or logging the priming status. No preconditions. The map contains entries for all <a class="el" href="#ada706e6a92b733f6be85aa4425b135c1" title="Enumerates outcome codes for a network priming operation.">PrimingReportStatus</a> values. </p>
+<p>Mapping from PrimingReportStatus codes to human-readable strings. </p>
+<p>Used when formatting or logging the priming status. No preconditions. The map contains entries for all PrimingReportStatus values. </p>
 
 </div>
 </div>
@@ -1187,7 +1231,7 @@ Resolved integer depth from maxLayers must not be zero. </dd></dl>
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
     <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1engine.html">engine</a></li>
-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/namespacegridfire_1_1engine.js b/docs/html/namespacegridfire_1_1engine.js
index ec777b6c..c6beffde 100644
--- a/docs/html/namespacegridfire_1_1engine.js
+++ b/docs/html/namespacegridfire_1_1engine.js
@@ -6,26 +6,24 @@ var namespacegridfire_1_1engine =
       [ "report_limiting_species", "namespacegridfire_1_1engine_1_1diagnostics.html#ad792baf3c6720fce34a5161c0ade3fc4", null ],
       [ "save_jacobian_to_file", "namespacegridfire_1_1engine_1_1diagnostics.html#ab247fdf00c23cf857d9131a3462d41ae", null ]
     ] ],
-    [ "AdaptiveEngineView", "classgridfire_1_1engine_1_1_adaptive_engine_view.html", "classgridfire_1_1engine_1_1_adaptive_engine_view" ],
-    [ "DefinedEngineView", "classgridfire_1_1engine_1_1_defined_engine_view.html", "classgridfire_1_1engine_1_1_defined_engine_view" ],
-    [ "DynamicEngine", "classgridfire_1_1engine_1_1_dynamic_engine.html", "classgridfire_1_1engine_1_1_dynamic_engine" ],
-    [ "EnergyDerivatives", "structgridfire_1_1engine_1_1_energy_derivatives.html", "structgridfire_1_1engine_1_1_energy_derivatives" ],
-    [ "Engine", "classgridfire_1_1engine_1_1_engine.html", "classgridfire_1_1engine_1_1_engine" ],
-    [ "EngineView", "classgridfire_1_1engine_1_1_engine_view.html", "classgridfire_1_1engine_1_1_engine_view" ],
-    [ "FileDefinedEngineView", "classgridfire_1_1engine_1_1_file_defined_engine_view.html", "classgridfire_1_1engine_1_1_file_defined_engine_view" ],
-    [ "GraphEngine", "classgridfire_1_1engine_1_1_graph_engine.html", "classgridfire_1_1engine_1_1_graph_engine" ],
-    [ "MultiscalePartitioningEngineView", "classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view.html", "classgridfire_1_1engine_1_1_multiscale_partitioning_engine_view" ],
-    [ "NetworkJacobian", "classgridfire_1_1engine_1_1_network_jacobian.html", "classgridfire_1_1engine_1_1_network_jacobian" ],
-    [ "NetworkPrimingEngineView", "classgridfire_1_1engine_1_1_network_priming_engine_view.html", "classgridfire_1_1engine_1_1_network_priming_engine_view" ],
-    [ "PrimingReport", "structgridfire_1_1engine_1_1_priming_report.html", "structgridfire_1_1engine_1_1_priming_report" ],
-    [ "Reaction", "classgridfire_1_1engine_1_1_reaction.html", "classgridfire_1_1engine_1_1_reaction" ],
-    [ "ReactionSet", "classgridfire_1_1engine_1_1_reaction_set.html", "classgridfire_1_1engine_1_1_reaction_set" ],
-    [ "StepDerivatives", "structgridfire_1_1engine_1_1_step_derivatives.html", "structgridfire_1_1engine_1_1_step_derivatives" ],
-    [ "EngineType", "conceptgridfire_1_1engine_1_1_engine_type.html", null ],
+    [ "AdaptiveEngineView", "classgridfire_1_1engine_1_1AdaptiveEngineView.html", "classgridfire_1_1engine_1_1AdaptiveEngineView" ],
+    [ "DefinedEngineView", "classgridfire_1_1engine_1_1DefinedEngineView.html", "classgridfire_1_1engine_1_1DefinedEngineView" ],
+    [ "DynamicEngine", "classgridfire_1_1engine_1_1DynamicEngine.html", "classgridfire_1_1engine_1_1DynamicEngine" ],
+    [ "EnergyDerivatives", "structgridfire_1_1engine_1_1EnergyDerivatives.html", "structgridfire_1_1engine_1_1EnergyDerivatives" ],
+    [ "Engine", "classgridfire_1_1engine_1_1Engine.html", "classgridfire_1_1engine_1_1Engine" ],
+    [ "EngineView", "classgridfire_1_1engine_1_1EngineView.html", "classgridfire_1_1engine_1_1EngineView" ],
+    [ "FileDefinedEngineView", "classgridfire_1_1engine_1_1FileDefinedEngineView.html", "classgridfire_1_1engine_1_1FileDefinedEngineView" ],
+    [ "GraphEngine", "classgridfire_1_1engine_1_1GraphEngine.html", "classgridfire_1_1engine_1_1GraphEngine" ],
+    [ "MultiscalePartitioningEngineView", "classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html", "classgridfire_1_1engine_1_1MultiscalePartitioningEngineView" ],
+    [ "NetworkJacobian", "classgridfire_1_1engine_1_1NetworkJacobian.html", "classgridfire_1_1engine_1_1NetworkJacobian" ],
+    [ "NetworkPrimingEngineView", "classgridfire_1_1engine_1_1NetworkPrimingEngineView.html", "classgridfire_1_1engine_1_1NetworkPrimingEngineView" ],
+    [ "PrimingReport", "structgridfire_1_1engine_1_1PrimingReport.html", "structgridfire_1_1engine_1_1PrimingReport" ],
+    [ "StepDerivatives", "structgridfire_1_1engine_1_1StepDerivatives.html", "structgridfire_1_1engine_1_1StepDerivatives" ],
+    [ "EngineType", "conceptgridfire_1_1engine_1_1EngineType.html", null ],
     [ "ADDouble", "namespacegridfire_1_1engine.html#a4562b782e8096986a9b0cc95aa8c1c02", null ],
-    [ "BuildDepthType", "namespacegridfire_1_1engine.html#a55cd7c313bbfafd5b6a1bcd6329ed99b", null ],
-    [ "JacobianEntry", "namespacegridfire_1_1engine.html#aa7b127f4fe99188e3d94ff11608d54f0", null ],
-    [ "SparsityPattern", "namespacegridfire_1_1engine.html#a9de1791ec719c0a9b76b835703336870", null ],
+    [ "BuildDepthType", "namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0", null ],
+    [ "JacobianEntry", "namespacegridfire_1_1engine.html#ac7974616b5fd465c4a42e3d882cdde6e", null ],
+    [ "SparsityPattern", "namespacegridfire_1_1engine.html#af5175018d2d1e78a8826dd33ec6d675f", null ],
     [ "EngineStatus", "namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5a", [
       [ "OKAY", "namespacegridfire_1_1engine.html#a4d057e41b489bf20744dfa8d2958ad5aa74eb855e4de6fe58228f03006c02fd8a", null ],
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diff --git a/docs/html/namespacegridfire_1_1engine_1_1diagnostics.html b/docs/html/namespacegridfire_1_1engine_1_1diagnostics.html
index d009f0d0..6812b06a 100644
--- a/docs/html/namespacegridfire_1_1engine_1_1diagnostics.html
+++ b/docs/html/namespacegridfire_1_1engine_1_1diagnostics.html
@@ -3,18 +3,16 @@
 <head>
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-<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="generator" content="Doxygen 1.9.8"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
 <title>GridFire: gridfire::engine::diagnostics Namespace Reference</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
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 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
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+<script type="text/javascript" src="resize.js"></script>
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@@ -29,7 +27,7 @@
  <tbody>
  <tr id="projectrow">
   <td id="projectalign">
-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
    </div>
    <div id="projectbrief">General Purpose Nuclear Network</div>
   </td>
@@ -38,24 +36,19 @@
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@@ -107,16 +100,16 @@ $(function(){initNavTree('namespacegridfire_1_1engine_1_1diagnostics.html','');
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:ad792baf3c6720fce34a5161c0ade3fc4" id="r_ad792baf3c6720fce34a5161c0ade3fc4"><td class="memItemLeft" align="right" valign="top">std::optional&lt; nlohmann::json &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ad792baf3c6720fce34a5161c0ade3fc4">report_limiting_species</a> (const <a class="el" href="classgridfire_1_1engine_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const std::vector&lt; double &gt; &amp;Y_full, const std::vector&lt; double &gt; &amp;E_full, double relTol, double absTol, size_t top_n=10, bool json=false)</td></tr>
+<tr class="memitem:ad792baf3c6720fce34a5161c0ade3fc4" id="r_ad792baf3c6720fce34a5161c0ade3fc4"><td class="memItemLeft" align="right" valign="top">std::optional&lt; nlohmann::json &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine_1_1diagnostics.html#ad792baf3c6720fce34a5161c0ade3fc4">report_limiting_species</a> (const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a> &amp;engine, const std::vector&lt; double &gt; &amp;Y_full, const std::vector&lt; double &gt; &amp;E_full, double relTol, double absTol, size_t top_n=10, bool json=false)</td></tr>
 <tr class="memdesc:ad792baf3c6720fce34a5161c0ade3fc4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Report the species that are limiting the accuracy of the integration. This is useful for identifying species that may be limiting the timestepping due to their high relative errors compared to the specified tolerances.  <br /></td></tr>
 <tr class="separator:ad792baf3c6720fce34a5161c0ade3fc4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aac2570f6bc58b8825674f60f1634149b" id="r_aac2570f6bc58b8825674f60f1634149b"><td class="memItemLeft" align="right" valign="top">std::optional&lt; nlohmann::json &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aac2570f6bc58b8825674f60f1634149b">inspect_species_balance</a> (const <a class="el" href="classgridfire_1_1engine_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const std::string &amp;species_name, const fourdst::composition::Composition &amp;comp, double T9, double rho, bool json)</td></tr>
+<tr class="memitem:aac2570f6bc58b8825674f60f1634149b" id="r_aac2570f6bc58b8825674f60f1634149b"><td class="memItemLeft" align="right" valign="top">std::optional&lt; nlohmann::json &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine_1_1diagnostics.html#aac2570f6bc58b8825674f60f1634149b">inspect_species_balance</a> (const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a> &amp;engine, const std::string &amp;species_name, const fourdst::composition::Composition &amp;comp, double T9, double rho, bool json)</td></tr>
 <tr class="memdesc:aac2570f6bc58b8825674f60f1634149b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Inspect the production and destruction balance of a specific species in the reaction network. This function analyzes the reactions that create and destroy the specified species, providing insights into potential imbalances that may affect the accuracy of the simulation.  <br /></td></tr>
 <tr class="separator:aac2570f6bc58b8825674f60f1634149b"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a8a42702b787f12988ae8fc7e1e6d8186" id="r_a8a42702b787f12988ae8fc7e1e6d8186"><td class="memItemLeft" align="right" valign="top">std::optional&lt; nlohmann::json &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8a42702b787f12988ae8fc7e1e6d8186">inspect_jacobian_stiffness</a> (const <a class="el" href="classgridfire_1_1engine_1_1_dynamic_engine.html">DynamicEngine</a> &amp;engine, const fourdst::composition::Composition &amp;comp, double T9, double rho, bool json)</td></tr>
+<tr class="memitem:a8a42702b787f12988ae8fc7e1e6d8186" id="r_a8a42702b787f12988ae8fc7e1e6d8186"><td class="memItemLeft" align="right" valign="top">std::optional&lt; nlohmann::json &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine_1_1diagnostics.html#a8a42702b787f12988ae8fc7e1e6d8186">inspect_jacobian_stiffness</a> (const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a> &amp;engine, const fourdst::composition::Composition &amp;comp, double T9, double rho, bool json)</td></tr>
 <tr class="memdesc:a8a42702b787f12988ae8fc7e1e6d8186"><td class="mdescLeft">&#160;</td><td class="mdescRight">Inspect the stiffness of the Jacobian matrix for the reaction network at the given temperature and density. This function evaluates the diagonal and off-diagonal elements of the Jacobian to identify potential numerical issues related to stiffness.  <br /></td></tr>
 <tr class="separator:a8a42702b787f12988ae8fc7e1e6d8186"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memitem:ab247fdf00c23cf857d9131a3462d41ae" id="r_ab247fdf00c23cf857d9131a3462d41ae"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1engine_1_1diagnostics.html#ab247fdf00c23cf857d9131a3462d41ae">save_jacobian_to_file</a> (const <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> &amp;jacobian, const std::string &amp;filename)</td></tr>
 <tr class="memdesc:ab247fdf00c23cf857d9131a3462d41ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Save the Jacobian matrix to a file for external analysis.  <br /></td></tr>
 <tr class="separator:ab247fdf00c23cf857d9131a3462d41ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
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@@ -130,27 +123,37 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">std::optional&lt; nlohmann::json &gt; gridfire::engine::diagnostics::inspect_jacobian_stiffness </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1_dynamic_engine.html">DynamicEngine</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>engine</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a> &amp;&#160;</td>
+          <td class="paramname"><em>engine</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">bool</td>          <td class="paramname"><span class="paramname"><em>json</em></span>&#160;)</td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>json</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -158,7 +161,7 @@ Functions</h2></td></tr>
 <p>Inspect the stiffness of the Jacobian matrix for the reaction network at the given temperature and density. This function evaluates the diagonal and off-diagonal elements of the Jacobian to identify potential numerical issues related to stiffness. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">engine</td><td>Constant reference to the <a class="el" href="classgridfire_1_1engine_1_1_dynamic_engine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> instance. </td></tr>
+    <tr><td class="paramname">engine</td><td>Constant reference to the <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> instance. </td></tr>
     <tr><td class="paramname">comp</td><td>The current composition of the system as a fourdst::composition::Composition object. </td></tr>
     <tr><td class="paramname">T9</td><td>The temperature in GK (10^9 K). </td></tr>
     <tr><td class="paramname">rho</td><td>The density in g/cm^3. </td></tr>
@@ -179,32 +182,43 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">std::optional&lt; nlohmann::json &gt; gridfire::engine::diagnostics::inspect_species_balance </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1_dynamic_engine.html">DynamicEngine</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>engine</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a> &amp;&#160;</td>
+          <td class="paramname"><em>engine</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::string &amp;</td>          <td class="paramname"><span class="paramname"><em>species_name</em></span>, </td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>species_name</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>comp</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>comp</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">bool</td>          <td class="paramname"><span class="paramname"><em>json</em></span>&#160;)</td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>json</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -212,7 +226,7 @@ Functions</h2></td></tr>
 <p>Inspect the production and destruction balance of a specific species in the reaction network. This function analyzes the reactions that create and destroy the specified species, providing insights into potential imbalances that may affect the accuracy of the simulation. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">engine</td><td>Constant reference to the <a class="el" href="classgridfire_1_1engine_1_1_dynamic_engine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> instance. </td></tr>
+    <tr><td class="paramname">engine</td><td>Constant reference to the <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> instance. </td></tr>
     <tr><td class="paramname">species_name</td><td>The name of the species to inspect. </td></tr>
     <tr><td class="paramname">comp</td><td>The current composition of the system as a fourdst::composition::Composition object. </td></tr>
     <tr><td class="paramname">T9</td><td>The temperature in GK (10^9 K). </td></tr>
@@ -234,37 +248,49 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">std::optional&lt; nlohmann::json &gt; gridfire::engine::diagnostics::report_limiting_species </td>
           <td>(</td>
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+          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">DynamicEngine</a> &amp;&#160;</td>
+          <td class="paramname"><em>engine</em>, </td>
         </tr>
         <tr>
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           <td></td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>Y_full</em></span>, </td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>Y_full</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; double &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>E_full</em></span>, </td>
+          <td class="paramtype">const std::vector&lt; double &gt; &amp;&#160;</td>
+          <td class="paramname"><em>E_full</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>relTol</em></span>, </td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>relTol</em>, </td>
         </tr>
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           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>absTol</em></span>, </td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>absTol</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">size_t</td>          <td class="paramname"><span class="paramname"><em>top_n</em></span><span class="paramdefsep"> = </span><span class="paramdefval">10</span>, </td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>top_n</em> = <code>10</code>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">bool</td>          <td class="paramname"><span class="paramname"><em>json</em></span><span class="paramdefsep"> = </span><span class="paramdefval">false</span>&#160;)</td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>json</em> = <code>false</code>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -272,7 +298,7 @@ Functions</h2></td></tr>
 <p>Report the species that are limiting the accuracy of the integration. This is useful for identifying species that may be limiting the timestepping due to their high relative errors compared to the specified tolerances. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">engine</td><td>Constant reference to the <a class="el" href="classgridfire_1_1engine_1_1_dynamic_engine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> instance. </td></tr>
+    <tr><td class="paramname">engine</td><td>Constant reference to the <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> instance. </td></tr>
     <tr><td class="paramname">Y_full</td><td>Vector of the current species molar abundances sorted in the same order as the dynamic engine species list. </td></tr>
     <tr><td class="paramname">E_full</td><td>Vector of the current species molar abundance errors sorted in the same order as the dynamic engine species list. </td></tr>
     <tr><td class="paramname">relTol</td><td>Relative tolerance for the integration. </td></tr>
@@ -295,12 +321,19 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">void gridfire::engine::diagnostics::save_jacobian_to_file </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html">NetworkJacobian</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>jacobian</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">NetworkJacobian</a> &amp;&#160;</td>
+          <td class="paramname"><em>jacobian</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::string &amp;</td>          <td class="paramname"><span class="paramname"><em>filename</em></span>&#160;)</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>filename</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -308,7 +341,7 @@ Functions</h2></td></tr>
 <p>Save the Jacobian matrix to a file for external analysis. </p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">jacobian</td><td>Constant reference to the <a class="el" href="classgridfire_1_1engine_1_1_network_jacobian.html" title="A wrapper class for handling the network Jacobian matrix.">NetworkJacobian</a> instance to be saved. </td></tr>
+    <tr><td class="paramname">jacobian</td><td>Constant reference to the <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html" title="A wrapper class for handling the network Jacobian matrix.">NetworkJacobian</a> instance to be saved. </td></tr>
     <tr><td class="paramname">filename</td><td>The name of the file where the Jacobian will be saved. </td></tr>
   </table>
   </dd>
@@ -322,7 +355,7 @@ Functions</h2></td></tr>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/namespacegridfire_1_1exceptions.html b/docs/html/namespacegridfire_1_1exceptions.html
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 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
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+<script type="text/javascript" src="resize.js"></script>
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@@ -29,7 +27,7 @@
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-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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    <div id="projectbrief">General Purpose Nuclear Network</div>
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@@ -38,24 +36,19 @@
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-<!-- Generated by Doxygen 1.13.2 -->
+<!-- Generated by Doxygen 1.9.8 -->
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@@ -106,101 +99,101 @@ $(function(){initNavTree('namespacegridfire_1_1exceptions.html',''); initResizab
 <div class="contents">
 
 <p>Namespace for GridFire exception classes. All custom exceptions defined in GridFire inherit from std::exception and are organized within this namespace for clarity and modularity.  
-<a href="#details">More...</a></p>
+<a href="namespacegridfire_1_1exceptions.html#details">More...</a></p>
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
 Classes</h2></td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_bad_collection_error.html">BadCollectionError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception for invalid composition collection in the engine.  <a href="classgridfire_1_1exceptions_1_1_bad_collection_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1BadCollectionError.html">BadCollectionError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception for invalid composition collection in the engine.  <a href="classgridfire_1_1exceptions_1_1BadCollectionError.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_bad_r_h_s_engine_error.html">BadRHSEngineError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception for errors in calculating the right-hand side (RHS).  <a href="classgridfire_1_1exceptions_1_1_bad_r_h_s_engine_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1BadRHSEngineError.html">BadRHSEngineError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception for errors in calculating the right-hand side (RHS).  <a href="classgridfire_1_1exceptions_1_1BadRHSEngineError.html#details">More...</a><br /></td></tr>
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_c_v_o_d_e_solver_failure_error.html">CVODESolverFailureError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception for failures in the CVODE solver.  <a href="classgridfire_1_1exceptions_1_1_c_v_o_d_e_solver_failure_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1CVODESolverFailureError.html">CVODESolverFailureError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception for failures in the CVODE solver.  <a href="classgridfire_1_1exceptions_1_1CVODESolverFailureError.html#details">More...</a><br /></td></tr>
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_debug_exception.html">DebugException</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception class for debug-only errors.  <a href="classgridfire_1_1exceptions_1_1_debug_exception.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1DebugException.html">DebugException</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception class for debug-only errors.  <a href="classgridfire_1_1exceptions_1_1DebugException.html#details">More...</a><br /></td></tr>
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_engine_error.html">EngineError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class for engine-related exceptions.  <a href="classgridfire_1_1exceptions_1_1_engine_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1EngineError.html">EngineError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class for engine-related exceptions.  <a href="classgridfire_1_1exceptions_1_1EngineError.html#details">More...</a><br /></td></tr>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1FailedToPartitionEngineError.html">FailedToPartitionEngineError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception for failures in partitioning the engine.  <a href="classgridfire_1_1exceptions_1_1FailedToPartitionEngineError.html#details">More...</a><br /></td></tr>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html">GridFireError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class for GridFire exceptions.  <a href="classgridfire_1_1exceptions_1_1GridFireError.html#details">More...</a><br /></td></tr>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1HashingError.html">HashingError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception class for hashing-related errors in GridFire.  <a href="classgridfire_1_1exceptions_1_1HashingError.html#details">More...</a><br /></td></tr>
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_ill_conditioned_jacobian_error.html">IllConditionedJacobianError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception thrown when the Jacobian matrix is ill-conditioned.  <a href="classgridfire_1_1exceptions_1_1_ill_conditioned_jacobian_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1IllConditionedJacobianError.html">IllConditionedJacobianError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception thrown when the Jacobian matrix is ill-conditioned.  <a href="classgridfire_1_1exceptions_1_1IllConditionedJacobianError.html#details">More...</a><br /></td></tr>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1InvalidQSESolutionError.html">InvalidQSESolutionError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception for invalid QSE solution in the engine.  <a href="classgridfire_1_1exceptions_1_1InvalidQSESolutionError.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_jacobian_error.html">JacobianError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class for Jacobian-related exceptions.  <a href="classgridfire_1_1exceptions_1_1_jacobian_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1JacobianError.html">JacobianError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class for Jacobian-related exceptions.  <a href="classgridfire_1_1exceptions_1_1JacobianError.html#details">More...</a><br /></td></tr>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1KINSolSolverFailureError.html">KINSolSolverFailureError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception for failures in the KINSOL solver.  <a href="classgridfire_1_1exceptions_1_1KINSolSolverFailureError.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_missing_base_reaction_error.html">MissingBaseReactionError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception thrown when a required reaction is missing from the underlying database (e.g., REACLIB).  <a href="classgridfire_1_1exceptions_1_1_missing_base_reaction_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1MissingBaseReactionError.html">MissingBaseReactionError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception thrown when a required reaction is missing from the underlying database (e.g., REACLIB).  <a href="classgridfire_1_1exceptions_1_1MissingBaseReactionError.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_missing_key_reaction_error.html">MissingKeyReactionError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception thrown when a constructed network fails to include a key reaction required by the policy.  <a href="classgridfire_1_1exceptions_1_1_missing_key_reaction_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1MissingKeyReactionError.html">MissingKeyReactionError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception thrown when a constructed network fails to include a key reaction required by the policy.  <a href="classgridfire_1_1exceptions_1_1MissingKeyReactionError.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_missing_seed_species_error.html">MissingSeedSpeciesError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception thrown when a required seed species is not found in the initial composition.  <a href="classgridfire_1_1exceptions_1_1_missing_seed_species_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1MissingSeedSpeciesError.html">MissingSeedSpeciesError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception thrown when a required seed species is not found in the initial composition.  <a href="classgridfire_1_1exceptions_1_1MissingSeedSpeciesError.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_network_resized_error.html">NetworkResizedError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception for errors during network resizing.  <a href="classgridfire_1_1exceptions_1_1_network_resized_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1NetworkResizedError.html">NetworkResizedError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception for errors during network resizing.  <a href="classgridfire_1_1exceptions_1_1NetworkResizedError.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_policy_error.html">PolicyError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class for all exceptions related to network policy operations.  <a href="classgridfire_1_1exceptions_1_1_policy_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1PolicyError.html">PolicyError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class for all exceptions related to network policy operations.  <a href="classgridfire_1_1exceptions_1_1PolicyError.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_reaction_error.html">ReactionError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class for all exceptions related to reaction operations.  <a href="classgridfire_1_1exceptions_1_1_reaction_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html">ReactionError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class for all exceptions related to reaction operations.  <a href="classgridfire_1_1exceptions_1_1ReactionError.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_reaction_parsing_error.html">ReactionParsingError</a></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1ReactionParsingError.html">ReactionParsingError</a></td></tr>
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_singular_jacobian_error.html">SingularJacobianError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception thrown when the Jacobian matrix is singular.  <a href="classgridfire_1_1exceptions_1_1_singular_jacobian_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1SingularJacobianError.html">SingularJacobianError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception thrown when the Jacobian matrix is singular.  <a href="classgridfire_1_1exceptions_1_1SingularJacobianError.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_solver_error.html">SolverError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class for all exceptions related to solver operations.  <a href="classgridfire_1_1exceptions_1_1_solver_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1SolverError.html">SolverError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class for all exceptions related to solver operations.  <a href="classgridfire_1_1exceptions_1_1SolverError.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_stale_jacobian_error.html">StaleJacobianError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception for stale Jacobian matrix access.  <a href="classgridfire_1_1exceptions_1_1_stale_jacobian_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1StaleJacobianError.html">StaleJacobianError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception for stale Jacobian matrix access.  <a href="classgridfire_1_1exceptions_1_1StaleJacobianError.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_s_u_n_d_i_a_l_s_error.html">SUNDIALSError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class for exceptions related to SUNDIALS solver operations.  <a href="classgridfire_1_1exceptions_1_1_s_u_n_d_i_a_l_s_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1SUNDIALSError.html">SUNDIALSError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class for exceptions related to SUNDIALS solver operations.  <a href="classgridfire_1_1exceptions_1_1SUNDIALSError.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html">UnableToSetNetworkReactionsError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception for failures in setting network reactions.  <a href="classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1UnableToSetNetworkReactionsError.html">UnableToSetNetworkReactionsError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception for failures in setting network reactions.  <a href="classgridfire_1_1exceptions_1_1UnableToSetNetworkReactionsError.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.html">UninitializedJacobianError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception for uninitialized Jacobian matrix access.  <a href="classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1UninitializedJacobianError.html">UninitializedJacobianError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception for uninitialized Jacobian matrix access.  <a href="classgridfire_1_1exceptions_1_1UninitializedJacobianError.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_unknown_jacobian_error.html">UnknownJacobianError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception for unknown Jacobian matrix access.  <a href="classgridfire_1_1exceptions_1_1_unknown_jacobian_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1UnknownJacobianError.html">UnknownJacobianError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Exception for unknown Jacobian matrix access.  <a href="classgridfire_1_1exceptions_1_1UnknownJacobianError.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1_utility_error.html">UtilityError</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class for utility-related errors in GridFire.  <a href="classgridfire_1_1exceptions_1_1_utility_error.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1exceptions_1_1UtilityError.html">UtilityError</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class for utility-related errors in GridFire.  <a href="classgridfire_1_1exceptions_1_1UtilityError.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
 <div class="textblock"><p>Namespace for GridFire exception classes. All custom exceptions defined in GridFire inherit from std::exception and are organized within this namespace for clarity and modularity. </p>
-<p>All GridFire exception classes derive from std::exception and then from <a class="el" href="classgridfire_1_1exceptions_1_1_grid_fire_error.html" title="Base class for GridFire exceptions.">gridfire::exceptions::GridFireError</a>; </p>
+<p>All GridFire exception classes derive from std::exception and then from <a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html" title="Base class for GridFire exceptions.">gridfire::exceptions::GridFireError</a>; </p>
 </div></div><!-- contents -->
 </div><!-- doc-content -->
 <!-- start footer part -->
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
     <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1exceptions.html">exceptions</a></li>
-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
   </ul>
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diff --git a/docs/html/namespacegridfire_1_1exceptions.js b/docs/html/namespacegridfire_1_1exceptions.js
index cdec9b3d..2e1f8903 100644
--- a/docs/html/namespacegridfire_1_1exceptions.js
+++ b/docs/html/namespacegridfire_1_1exceptions.js
@@ -1,30 +1,30 @@
 var namespacegridfire_1_1exceptions =
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-    [ "BadRHSEngineError", "classgridfire_1_1exceptions_1_1_bad_r_h_s_engine_error.html", null ],
-    [ "CVODESolverFailureError", "classgridfire_1_1exceptions_1_1_c_v_o_d_e_solver_failure_error.html", null ],
-    [ "DebugException", "classgridfire_1_1exceptions_1_1_debug_exception.html", "classgridfire_1_1exceptions_1_1_debug_exception" ],
-    [ "EngineError", "classgridfire_1_1exceptions_1_1_engine_error.html", "classgridfire_1_1exceptions_1_1_engine_error" ],
-    [ "FailedToPartitionEngineError", "classgridfire_1_1exceptions_1_1_failed_to_partition_engine_error.html", null ],
-    [ "GridFireError", "classgridfire_1_1exceptions_1_1_grid_fire_error.html", "classgridfire_1_1exceptions_1_1_grid_fire_error" ],
-    [ "HashingError", "classgridfire_1_1exceptions_1_1_hashing_error.html", null ],
-    [ "IllConditionedJacobianError", "classgridfire_1_1exceptions_1_1_ill_conditioned_jacobian_error.html", null ],
-    [ "InvalidQSESolutionError", "classgridfire_1_1exceptions_1_1_invalid_q_s_e_solution_error.html", null ],
-    [ "JacobianError", "classgridfire_1_1exceptions_1_1_jacobian_error.html", null ],
-    [ "KINSolSolverFailureError", "classgridfire_1_1exceptions_1_1_k_i_n_sol_solver_failure_error.html", null ],
-    [ "MissingBaseReactionError", "classgridfire_1_1exceptions_1_1_missing_base_reaction_error.html", null ],
-    [ "MissingKeyReactionError", "classgridfire_1_1exceptions_1_1_missing_key_reaction_error.html", null ],
-    [ "MissingSeedSpeciesError", "classgridfire_1_1exceptions_1_1_missing_seed_species_error.html", null ],
-    [ "NetworkResizedError", "classgridfire_1_1exceptions_1_1_network_resized_error.html", null ],
-    [ "PolicyError", "classgridfire_1_1exceptions_1_1_policy_error.html", "classgridfire_1_1exceptions_1_1_policy_error" ],
-    [ "ReactionError", "classgridfire_1_1exceptions_1_1_reaction_error.html", "classgridfire_1_1exceptions_1_1_reaction_error" ],
-    [ "ReactionParsingError", "classgridfire_1_1exceptions_1_1_reaction_parsing_error.html", "classgridfire_1_1exceptions_1_1_reaction_parsing_error" ],
-    [ "SingularJacobianError", "classgridfire_1_1exceptions_1_1_singular_jacobian_error.html", null ],
-    [ "SolverError", "classgridfire_1_1exceptions_1_1_solver_error.html", "classgridfire_1_1exceptions_1_1_solver_error" ],
-    [ "StaleJacobianError", "classgridfire_1_1exceptions_1_1_stale_jacobian_error.html", null ],
-    [ "SUNDIALSError", "classgridfire_1_1exceptions_1_1_s_u_n_d_i_a_l_s_error.html", null ],
-    [ "UnableToSetNetworkReactionsError", "classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html", null ],
-    [ "UninitializedJacobianError", "classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.html", null ],
-    [ "UnknownJacobianError", "classgridfire_1_1exceptions_1_1_unknown_jacobian_error.html", null ],
-    [ "UtilityError", "classgridfire_1_1exceptions_1_1_utility_error.html", "classgridfire_1_1exceptions_1_1_utility_error" ]
+    [ "BadCollectionError", "classgridfire_1_1exceptions_1_1BadCollectionError.html", null ],
+    [ "BadRHSEngineError", "classgridfire_1_1exceptions_1_1BadRHSEngineError.html", null ],
+    [ "CVODESolverFailureError", "classgridfire_1_1exceptions_1_1CVODESolverFailureError.html", null ],
+    [ "DebugException", "classgridfire_1_1exceptions_1_1DebugException.html", "classgridfire_1_1exceptions_1_1DebugException" ],
+    [ "EngineError", "classgridfire_1_1exceptions_1_1EngineError.html", "classgridfire_1_1exceptions_1_1EngineError" ],
+    [ "FailedToPartitionEngineError", "classgridfire_1_1exceptions_1_1FailedToPartitionEngineError.html", null ],
+    [ "GridFireError", "classgridfire_1_1exceptions_1_1GridFireError.html", "classgridfire_1_1exceptions_1_1GridFireError" ],
+    [ "HashingError", "classgridfire_1_1exceptions_1_1HashingError.html", null ],
+    [ "IllConditionedJacobianError", "classgridfire_1_1exceptions_1_1IllConditionedJacobianError.html", null ],
+    [ "InvalidQSESolutionError", "classgridfire_1_1exceptions_1_1InvalidQSESolutionError.html", null ],
+    [ "JacobianError", "classgridfire_1_1exceptions_1_1JacobianError.html", null ],
+    [ "KINSolSolverFailureError", "classgridfire_1_1exceptions_1_1KINSolSolverFailureError.html", null ],
+    [ "MissingBaseReactionError", "classgridfire_1_1exceptions_1_1MissingBaseReactionError.html", null ],
+    [ "MissingKeyReactionError", "classgridfire_1_1exceptions_1_1MissingKeyReactionError.html", null ],
+    [ "MissingSeedSpeciesError", "classgridfire_1_1exceptions_1_1MissingSeedSpeciesError.html", null ],
+    [ "NetworkResizedError", "classgridfire_1_1exceptions_1_1NetworkResizedError.html", null ],
+    [ "PolicyError", "classgridfire_1_1exceptions_1_1PolicyError.html", "classgridfire_1_1exceptions_1_1PolicyError" ],
+    [ "ReactionError", "classgridfire_1_1exceptions_1_1ReactionError.html", "classgridfire_1_1exceptions_1_1ReactionError" ],
+    [ "ReactionParsingError", "classgridfire_1_1exceptions_1_1ReactionParsingError.html", "classgridfire_1_1exceptions_1_1ReactionParsingError" ],
+    [ "SingularJacobianError", "classgridfire_1_1exceptions_1_1SingularJacobianError.html", null ],
+    [ "SolverError", "classgridfire_1_1exceptions_1_1SolverError.html", "classgridfire_1_1exceptions_1_1SolverError" ],
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+    [ "SUNDIALSError", "classgridfire_1_1exceptions_1_1SUNDIALSError.html", null ],
+    [ "UnableToSetNetworkReactionsError", "classgridfire_1_1exceptions_1_1UnableToSetNetworkReactionsError.html", null ],
+    [ "UninitializedJacobianError", "classgridfire_1_1exceptions_1_1UninitializedJacobianError.html", null ],
+    [ "UnknownJacobianError", "classgridfire_1_1exceptions_1_1UnknownJacobianError.html", null ],
+    [ "UtilityError", "classgridfire_1_1exceptions_1_1UtilityError.html", "classgridfire_1_1exceptions_1_1UtilityError" ]
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diff --git a/docs/html/namespacegridfire_1_1io.html b/docs/html/namespacegridfire_1_1io.html
index 4736d9df..f71d2113 100644
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html">MESANetworkFileParser</a></td></tr>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html">SimpleReactionListFileParser</a></td></tr>
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 var namespacegridfire_1_1io =
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+    [ "MESANetworkFileParser", "classgridfire_1_1io_1_1MESANetworkFileParser.html", "classgridfire_1_1io_1_1MESANetworkFileParser" ],
+    [ "NetworkFileParser", "classgridfire_1_1io_1_1NetworkFileParser.html", "classgridfire_1_1io_1_1NetworkFileParser" ],
+    [ "SimpleReactionListFileParser", "classgridfire_1_1io_1_1SimpleReactionListFileParser.html", "classgridfire_1_1io_1_1SimpleReactionListFileParser" ],
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 <p>Namespace for generative input/output functionalities.  
-<a href="#details">More...</a></p>
+<a href="namespacegridfire_1_1io_1_1gen.html#details">More...</a></p>
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1io_1_1gen_1_1PyFunctionDef.html">PyFunctionDef</a></td></tr>
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+<tr class="memitem:a597ff691fb592f7306af96a269117631" id="r_a597ff691fb592f7306af96a269117631"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1io_1_1gen.html#a597ff691fb592f7306af96a269117631">exportEngineToPy</a> (const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a> &amp;engine)</td></tr>
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+          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a> &amp;&#160;</td>
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+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>fileName</em>&#160;</td>
+        </tr>
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+<dl class="section return"><dt>Returns</dt><dd>A <a class="el" href="structgridfire_1_1io_1_1gen_1_1PyFunctionDef.html" title="Structure representing a Python function definition.">PyFunctionDef</a> structure containing the Python function representation of the reaction.</dd></dl>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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 var namespacegridfire_1_1io_1_1gen =
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+    [ "PyFunctionDef", "structgridfire_1_1io_1_1gen_1_1PyFunctionDef.html", "structgridfire_1_1io_1_1gen_1_1PyFunctionDef" ],
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     [ "exportEngineToPy", "namespacegridfire_1_1io_1_1gen.html#ac192d690214100bf8d938bffaeefbe64", null ],
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+<script type="text/javascript" src="resize.js"></script>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1CompositePartitionFunction.html">CompositePartitionFunction</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Combines multiple <a class="el" href="classgridfire_1_1partition_1_1PartitionFunction.html" title="Abstract interface for evaluating nuclear partition functions.">PartitionFunction</a> instances into a single composite strategy.  <a href="classgridfire_1_1partition_1_1CompositePartitionFunction.html#details">More...</a><br /></td></tr>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html">GroundStatePartitionFunction</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Partition function implementation for nuclear ground states.  <a href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html#details">More...</a><br /></td></tr>
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+<tr class="memdesc:ae931a76ba5efada4ca45ac93333e728c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Enumerates available partition function implementations.  <a href="namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728c">More...</a><br /></td></tr>
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+<div class="line">        {<a class="code hl_enumvalue" href="namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728ca4ca5b5dcd7343b06b860f05f3bc454b1">RauscherThielemann</a>, <span class="stringliteral">&quot;RauscherThielemann&quot;</span>},</div>
+<div class="line">        {<a class="code hl_enumvalue" href="namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728cab3ecbf203bf429cbb751d1de1e58f335">GroundState</a>, <span class="stringliteral">&quot;GroundState&quot;</span>}</div>
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-<div class="ttc" id="anamespacegridfire_1_1partition_html_ae931a76ba5efada4ca45ac93333e728cab3ecbf203bf429cbb751d1de1e58f335"><div class="ttname"><a href="#ae931a76ba5efada4ca45ac93333e728cab3ecbf203bf429cbb751d1de1e58f335">gridfire::partition::GroundState</a></div><div class="ttdeci">@ GroundState</div><div class="ttdoc">Ground state partition function.</div><div class="ttdef"><b>Definition</b> partition_types.h:17</div></div>
+<div class="ttc" id="anamespacegridfire_1_1partition_html_ae931a76ba5efada4ca45ac93333e728ca4ca5b5dcd7343b06b860f05f3bc454b1"><div class="ttname"><a href="namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728ca4ca5b5dcd7343b06b860f05f3bc454b1">gridfire::partition::RauscherThielemann</a></div><div class="ttdeci">@ RauscherThielemann</div><div class="ttdoc">Rauscher-Thielemann partition function.</div><div class="ttdef"><b>Definition</b> partition_types.h:16</div></div>
+<div class="ttc" id="anamespacegridfire_1_1partition_html_ae931a76ba5efada4ca45ac93333e728cab3ecbf203bf429cbb751d1de1e58f335"><div class="ttname"><a href="namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728cab3ecbf203bf429cbb751d1de1e58f335">gridfire::partition::GroundState</a></div><div class="ttdeci">@ GroundState</div><div class="ttdoc">Ground state partition function.</div><div class="ttdef"><b>Definition</b> partition_types.h:17</div></div>
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+<p>Mapping from BasePartitionType enum to human-readable string. </p>
+<p>Used for logging, reporting, or serialization. Ensure that all enum values are represented in this map. </p><dl class="section pre"><dt>Precondition</dt><dd>Contains entries for all values of BasePartitionType. </dd></dl>
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+          <td class="memname">std::unordered_map&lt;std::string, <a class="el" href="namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728c">BasePartitionType</a>&gt; gridfire::partition::stringToBasePartitionType</td>
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+<div class="line">        {<span class="stringliteral">&quot;RauscherThielemann&quot;</span>, <a class="code hl_enumvalue" href="namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728ca4ca5b5dcd7343b06b860f05f3bc454b1">RauscherThielemann</a>},</div>
+<div class="line">        {<span class="stringliteral">&quot;GroundState&quot;</span>, <a class="code hl_enumvalue" href="namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728cab3ecbf203bf429cbb751d1de1e58f335">GroundState</a>}</div>
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-<p>Mapping from string to <a class="el" href="#ae931a76ba5efada4ca45ac93333e728c" title="Enumerates available partition function implementations.">BasePartitionType</a> enum. </p>
+<p>Mapping from string to BasePartitionType enum. </p>
 <p>Used for parsing configuration or user input. Strings must match exactly to one of the defined partition types. </p><dl class="section pre"><dt>Precondition</dt><dd>Uses keys that exactly match the outputs of basePartitionTypeToString. </dd></dl>
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+<dl class="section post"><dt>Postcondition</dt><dd>Can convert valid string identifiers back to BasePartitionType. </dd></dl>
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+    [ "CompositePartitionFunction", "classgridfire_1_1partition_1_1CompositePartitionFunction.html", "classgridfire_1_1partition_1_1CompositePartitionFunction" ],
+    [ "GroundStatePartitionFunction", "classgridfire_1_1partition_1_1GroundStatePartitionFunction.html", "classgridfire_1_1partition_1_1GroundStatePartitionFunction" ],
+    [ "PartitionFunction", "classgridfire_1_1partition_1_1PartitionFunction.html", "classgridfire_1_1partition_1_1PartitionFunction" ],
+    [ "RauscherThielemannPartitionFunction", "classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction.html", "classgridfire_1_1partition_1_1RauscherThielemannPartitionFunction" ],
     [ "BasePartitionType", "namespacegridfire_1_1partition.html#ae931a76ba5efada4ca45ac93333e728c", [
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html">RauscherThielemannPartitionDataRecord</a></td></tr>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+    [ "RauscherThielemannPartitionDataRecord", "structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html", "structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord" ]
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1CNOIChainPolicy.html">CNOIChainPolicy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">CNO I Chain Policy.  <a href="classgridfire_1_1policy_1_1CNOIChainPolicy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_i_chain_policy.html">CNOIIChainPolicy</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">CNO II Chain Policy.  <a href="classgridfire_1_1policy_1_1_c_n_o_i_i_chain_policy.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html">CNOIIChainPolicy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">CNO II Chain Policy.  <a href="classgridfire_1_1policy_1_1CNOIIChainPolicy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_i_i_chain_policy.html">CNOIIIChainPolicy</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">CNO III Chain Policy.  <a href="classgridfire_1_1policy_1_1_c_n_o_i_i_i_chain_policy.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1CNOIIIChainPolicy.html">CNOIIIChainPolicy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">CNO III Chain Policy.  <a href="classgridfire_1_1policy_1_1CNOIIIChainPolicy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1_c_n_o_i_v_chain_policy.html">CNOIVChainPolicy</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">CNO IV Chain Policy.  <a href="classgridfire_1_1policy_1_1_c_n_o_i_v_chain_policy.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html">CNOIVChainPolicy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">CNO IV Chain Policy.  <a href="classgridfire_1_1policy_1_1CNOIVChainPolicy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1_hot_c_n_o_chain_policy.html">HotCNOChainPolicy</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Hot CNO Chain Policy.  <a href="classgridfire_1_1policy_1_1_hot_c_n_o_chain_policy.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1HotCNOChainPolicy.html">HotCNOChainPolicy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Hot CNO Chain Policy.  <a href="classgridfire_1_1policy_1_1HotCNOChainPolicy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1_hot_c_n_o_i_chain_policy.html">HotCNOIChainPolicy</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Hot CNO I Chain Policy.  <a href="classgridfire_1_1policy_1_1_hot_c_n_o_i_chain_policy.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html">HotCNOIChainPolicy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Hot CNO I Chain Policy.  <a href="classgridfire_1_1policy_1_1HotCNOIChainPolicy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1_hot_c_n_o_i_i_chain_policy.html">HotCNOIIChainPolicy</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Hot CNO II Chain Policy.  <a href="classgridfire_1_1policy_1_1_hot_c_n_o_i_i_chain_policy.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html">HotCNOIIChainPolicy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Hot CNO II Chain Policy.  <a href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1_hot_c_n_o_i_i_i_chain_policy.html">HotCNOIIIChainPolicy</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Hot CNO III Chain Policy.  <a href="classgridfire_1_1policy_1_1_hot_c_n_o_i_i_i_chain_policy.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html">HotCNOIIIChainPolicy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Hot CNO III Chain Policy.  <a href="classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1_main_sequence_policy.html">MainSequencePolicy</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A <a class="el" href="classgridfire_1_1policy_1_1_network_policy.html" title="Abstract interface for policies that construct DynamicEngine networks from a seed composition.">NetworkPolicy</a> for building reaction networks suitable for low-mass main-sequence stars.  <a href="classgridfire_1_1policy_1_1_main_sequence_policy.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequencePolicy.html">MainSequencePolicy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html" title="Abstract interface for policies that construct DynamicEngine networks from a seed composition.">NetworkPolicy</a> for building reaction networks suitable for low-mass main-sequence stars.  <a href="classgridfire_1_1policy_1_1MainSequencePolicy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1_main_sequence_reaction_chain_policy.html">MainSequenceReactionChainPolicy</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Main Sequence Reaction Chain Policy.  <a href="classgridfire_1_1policy_1_1_main_sequence_reaction_chain_policy.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html">MainSequenceReactionChainPolicy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Main Sequence Reaction Chain Policy.  <a href="classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1_multi_reaction_chain_policy.html">MultiReactionChainPolicy</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A <a class="el" href="classgridfire_1_1policy_1_1_reaction_chain_policy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> composed of multiple child <a class="el" href="classgridfire_1_1policy_1_1_reaction_chain_policy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances.  <a href="classgridfire_1_1policy_1_1_multi_reaction_chain_policy.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html">MultiReactionChainPolicy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> composed of multiple child <a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html" title="Abstract interface encapsulating a set of reactions representing a single chain or pathway.">ReactionChainPolicy</a> instances.  <a href="classgridfire_1_1policy_1_1MultiReactionChainPolicy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1_network_policy.html">NetworkPolicy</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Abstract interface for policies that construct DynamicEngine networks from a seed composition.  <a href="classgridfire_1_1policy_1_1_network_policy.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html">NetworkPolicy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Abstract interface for policies that construct DynamicEngine networks from a seed composition.  <a href="classgridfire_1_1policy_1_1NetworkPolicy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1_proton_proton_chain_policy.html">ProtonProtonChainPolicy</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Proton-Proton Chain Policy.  <a href="classgridfire_1_1policy_1_1_proton_proton_chain_policy.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html">ProtonProtonChainPolicy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Proton-Proton Chain Policy.  <a href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1_proton_proton_i_chain_policy.html">ProtonProtonIChainPolicy</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Proton-Proton I Chain Policy.  <a href="classgridfire_1_1policy_1_1_proton_proton_i_chain_policy.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html">ProtonProtonIChainPolicy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Proton-Proton I Chain Policy.  <a href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1_proton_proton_i_i_chain_policy.html">ProtonProtonIIChainPolicy</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Proton-Proton II Chain Policy.  <a href="classgridfire_1_1policy_1_1_proton_proton_i_i_chain_policy.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html">ProtonProtonIIChainPolicy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Proton-Proton II Chain Policy.  <a href="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1_proton_proton_i_i_i_chain_policy.html">ProtonProtonIIIChainPolicy</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Proton-Proton III Chain Policy.  <a href="classgridfire_1_1policy_1_1_proton_proton_i_i_i_chain_policy.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html">ProtonProtonIIIChainPolicy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Proton-Proton III Chain Policy.  <a href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1_reaction_chain_policy.html">ReactionChainPolicy</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Abstract interface encapsulating a set of reactions representing a single chain or pathway.  <a href="classgridfire_1_1policy_1_1_reaction_chain_policy.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1ReactionChainPolicy.html">ReactionChainPolicy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Abstract interface encapsulating a set of reactions representing a single chain or pathway.  <a href="classgridfire_1_1policy_1_1ReactionChainPolicy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1_temperature_dependent_chain_policy.html">TemperatureDependentChainPolicy</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class for reaction chain policies that are active only within specific temperature ranges.  <a href="classgridfire_1_1policy_1_1_temperature_dependent_chain_policy.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html">TemperatureDependentChainPolicy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Base class for reaction chain policies that are active only within specific temperature ranges.  <a href="classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1_triple_alpha_chain_policy.html">TripleAlphaChainPolicy</a></td></tr>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html">TripleAlphaChainPolicy</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Triple-Alpha Chain Policy.  <a href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="enum-members" name="enum-members"></a>
 Enumerations</h2></td></tr>
-<tr class="memitem:a0f52cd334fb84998d9c68430a41f6109" id="r_a0f52cd334fb84998d9c68430a41f6109"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0f52cd334fb84998d9c68430a41f6109">NetworkPolicyStatus</a> { <br />
-&#160;&#160;<a class="el" href="#a0f52cd334fb84998d9c68430a41f6109add652546039b18970b8dcf2cff824268">UNINITIALIZED</a>
-, <a class="el" href="#a0f52cd334fb84998d9c68430a41f6109af8392674ffb9a1455835c2cd5eb3f5ae">INITIALIZED_UNVERIFIED</a>
-, <a class="el" href="#a0f52cd334fb84998d9c68430a41f6109a2f017cce8fa4a6b50e2034ff16d1eda3">MISSING_KEY_REACTION</a>
-, <a class="el" href="#a0f52cd334fb84998d9c68430a41f6109ae0584675cd48c19691ed09c98b2d2730">MISSING_KEY_SPECIES</a>
+<tr class="memitem:a0f52cd334fb84998d9c68430a41f6109" id="r_a0f52cd334fb84998d9c68430a41f6109"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109">NetworkPolicyStatus</a> { <br />
+&#160;&#160;<a class="el" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109add652546039b18970b8dcf2cff824268">UNINITIALIZED</a>
+, <a class="el" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109af8392674ffb9a1455835c2cd5eb3f5ae">INITIALIZED_UNVERIFIED</a>
+, <a class="el" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109a2f017cce8fa4a6b50e2034ff16d1eda3">MISSING_KEY_REACTION</a>
+, <a class="el" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109ae0584675cd48c19691ed09c98b2d2730">MISSING_KEY_SPECIES</a>
 , <br />
-&#160;&#160;<a class="el" href="#a0f52cd334fb84998d9c68430a41f6109aff6473ea13033c0680a084b372f5755e">INITIALIZED_VERIFIED</a>
+&#160;&#160;<a class="el" href="namespacegridfire_1_1policy.html#a0f52cd334fb84998d9c68430a41f6109aff6473ea13033c0680a084b372f5755e">INITIALIZED_VERIFIED</a>
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-    [ "MainSequenceReactionChainPolicy", "classgridfire_1_1policy_1_1_main_sequence_reaction_chain_policy.html", "classgridfire_1_1policy_1_1_main_sequence_reaction_chain_policy" ],
-    [ "MultiReactionChainPolicy", "classgridfire_1_1policy_1_1_multi_reaction_chain_policy.html", "classgridfire_1_1policy_1_1_multi_reaction_chain_policy" ],
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-    [ "ReactionChainPolicy", "classgridfire_1_1policy_1_1_reaction_chain_policy.html", "classgridfire_1_1policy_1_1_reaction_chain_policy" ],
-    [ "TemperatureDependentChainPolicy", "classgridfire_1_1policy_1_1_temperature_dependent_chain_policy.html", "classgridfire_1_1policy_1_1_temperature_dependent_chain_policy" ],
-    [ "TripleAlphaChainPolicy", "classgridfire_1_1policy_1_1_triple_alpha_chain_policy.html", "classgridfire_1_1policy_1_1_triple_alpha_chain_policy" ],
+    [ "CNOChainPolicy", "classgridfire_1_1policy_1_1CNOChainPolicy.html", "classgridfire_1_1policy_1_1CNOChainPolicy" ],
+    [ "CNOIChainPolicy", "classgridfire_1_1policy_1_1CNOIChainPolicy.html", "classgridfire_1_1policy_1_1CNOIChainPolicy" ],
+    [ "CNOIIChainPolicy", "classgridfire_1_1policy_1_1CNOIIChainPolicy.html", "classgridfire_1_1policy_1_1CNOIIChainPolicy" ],
+    [ "CNOIIIChainPolicy", "classgridfire_1_1policy_1_1CNOIIIChainPolicy.html", "classgridfire_1_1policy_1_1CNOIIIChainPolicy" ],
+    [ "CNOIVChainPolicy", "classgridfire_1_1policy_1_1CNOIVChainPolicy.html", "classgridfire_1_1policy_1_1CNOIVChainPolicy" ],
+    [ "HotCNOChainPolicy", "classgridfire_1_1policy_1_1HotCNOChainPolicy.html", "classgridfire_1_1policy_1_1HotCNOChainPolicy" ],
+    [ "HotCNOIChainPolicy", "classgridfire_1_1policy_1_1HotCNOIChainPolicy.html", "classgridfire_1_1policy_1_1HotCNOIChainPolicy" ],
+    [ "HotCNOIIChainPolicy", "classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html", "classgridfire_1_1policy_1_1HotCNOIIChainPolicy" ],
+    [ "HotCNOIIIChainPolicy", "classgridfire_1_1policy_1_1HotCNOIIIChainPolicy.html", "classgridfire_1_1policy_1_1HotCNOIIIChainPolicy" ],
+    [ "MainSequencePolicy", "classgridfire_1_1policy_1_1MainSequencePolicy.html", "classgridfire_1_1policy_1_1MainSequencePolicy" ],
+    [ "MainSequenceReactionChainPolicy", "classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html", "classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy" ],
+    [ "MultiReactionChainPolicy", "classgridfire_1_1policy_1_1MultiReactionChainPolicy.html", "classgridfire_1_1policy_1_1MultiReactionChainPolicy" ],
+    [ "NetworkPolicy", "classgridfire_1_1policy_1_1NetworkPolicy.html", "classgridfire_1_1policy_1_1NetworkPolicy" ],
+    [ "ProtonProtonChainPolicy", "classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html", "classgridfire_1_1policy_1_1ProtonProtonChainPolicy" ],
+    [ "ProtonProtonIChainPolicy", "classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html", "classgridfire_1_1policy_1_1ProtonProtonIChainPolicy" ],
+    [ "ProtonProtonIIChainPolicy", "classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html", "classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy" ],
+    [ "ProtonProtonIIIChainPolicy", "classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html", "classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy" ],
+    [ "ReactionChainPolicy", "classgridfire_1_1policy_1_1ReactionChainPolicy.html", "classgridfire_1_1policy_1_1ReactionChainPolicy" ],
+    [ "TemperatureDependentChainPolicy", "classgridfire_1_1policy_1_1TemperatureDependentChainPolicy.html", "classgridfire_1_1policy_1_1TemperatureDependentChainPolicy" ],
+    [ "TripleAlphaChainPolicy", "classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html", "classgridfire_1_1policy_1_1TripleAlphaChainPolicy" ],
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html">IsotopeGrid</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Regular 2D grid and payloads for a single isotope (A,Z).  <a href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">RateDataRow</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">One row of the unified weak-rate data table for a specific isotope and state.  <a href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html">RateDataRow</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">One row of the unified weak-rate data table for a specific isotope and state.  <a href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html">WeakRateDerivatives</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Partial derivatives of the log10() fields w.r.t. (T9, log10(rho*Ye)).  <a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives.html">WeakRateDerivatives</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Partial derivatives of the log10() fields w.r.t. (T9, log10(rho*Ye)).  <a href="structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">WeakRateInterpolator</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">3D table interpolator for tabulated weak reaction data by isotope.  <a href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html">WeakRateInterpolator</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">3D table interpolator for tabulated weak reaction data by isotope.  <a href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">WeakRatePayload</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interpolated weak-rate payload at a single state.  <a href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html">WeakRatePayload</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Interpolated weak-rate payload at a single state.  <a href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">WeakReaction</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Concrete Reaction representing a single weak process (beta±, e−/e+ capture).  <a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html">WeakReaction</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Concrete Reaction representing a single weak process (beta±, e−/e+ capture).  <a href="classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">WeakReactionEntry</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A single weak-reaction data point (type, state, and log values).  <a href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">WeakReactionEntry</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A single weak-reaction data point (type, state, and log values).  <a href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html">WeakReactionMap</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Index of available weak reactions keyed by species.  <a href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html">WeakReactionMap</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Index of available weak reactions keyed by species.  <a href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="enum-members" name="enum-members"></a>
 Enumerations</h2></td></tr>
-<tr class="memitem:ae834fb6f8cd1ac922967d5296a25bec7" id="r_ae834fb6f8cd1ac922967d5296a25bec7"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a> { <a class="el" href="#ae834fb6f8cd1ac922967d5296a25bec7a2f146a0cd66e2d010c8802852db26759">BETA_PLUS_DECAY</a>
-, <a class="el" href="#ae834fb6f8cd1ac922967d5296a25bec7a12122315f1a94a10826f77a8fd949a94">BETA_MINUS_DECAY</a>
-, <a class="el" href="#ae834fb6f8cd1ac922967d5296a25bec7a26b6967eb578cb1b08373b342bf72ef7">ELECTRON_CAPTURE</a>
-, <a class="el" href="#ae834fb6f8cd1ac922967d5296a25bec7ae0be5539e1cf1c424806baa62540aa9d">POSITRON_CAPTURE</a>
+<tr class="memitem:ae834fb6f8cd1ac922967d5296a25bec7" id="r_ae834fb6f8cd1ac922967d5296a25bec7"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a> { <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a2f146a0cd66e2d010c8802852db26759">BETA_PLUS_DECAY</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a12122315f1a94a10826f77a8fd949a94">BETA_MINUS_DECAY</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a26b6967eb578cb1b08373b342bf72ef7">ELECTRON_CAPTURE</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7ae0be5539e1cf1c424806baa62540aa9d">POSITRON_CAPTURE</a>
  }</td></tr>
-<tr class="memdesc:ae834fb6f8cd1ac922967d5296a25bec7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Weak reaction channel identifiers.  <a href="#ae834fb6f8cd1ac922967d5296a25bec7">More...</a><br /></td></tr>
+<tr class="memdesc:ae834fb6f8cd1ac922967d5296a25bec7"><td class="mdescLeft">&#160;</td><td class="mdescRight">Weak reaction channel identifiers.  <a href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">More...</a><br /></td></tr>
 <tr class="separator:ae834fb6f8cd1ac922967d5296a25bec7"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aeddc9527afbf9755d4252f64ad5d70ca" id="r_aeddc9527afbf9755d4252f64ad5d70ca"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aeddc9527afbf9755d4252f64ad5d70ca">NeutrinoTypes</a> { <br />
-&#160;&#160;<a class="el" href="#aeddc9527afbf9755d4252f64ad5d70caa3fde0fbf2166dfb3dd60458c535699d8">ELECTRON_NEUTRINO</a>
-, <a class="el" href="#aeddc9527afbf9755d4252f64ad5d70caa8d99b7a21c927a7b8274caaf23290de6">ELECTRON_ANTINEUTRINO</a>
-, <a class="el" href="#aeddc9527afbf9755d4252f64ad5d70caaabd6fefb3f84f632c3968acfcd76d554">MUON_NEUTRINO</a>
-, <a class="el" href="#aeddc9527afbf9755d4252f64ad5d70caae6f2e17ddd61e72e331faf8700bbedef">MUON_ANTINEUTRINO</a>
+<tr class="memitem:aeddc9527afbf9755d4252f64ad5d70ca" id="r_aeddc9527afbf9755d4252f64ad5d70ca"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70ca">NeutrinoTypes</a> { <br />
+&#160;&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa3fde0fbf2166dfb3dd60458c535699d8">ELECTRON_NEUTRINO</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa8d99b7a21c927a7b8274caaf23290de6">ELECTRON_ANTINEUTRINO</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caaabd6fefb3f84f632c3968acfcd76d554">MUON_NEUTRINO</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caae6f2e17ddd61e72e331faf8700bbedef">MUON_ANTINEUTRINO</a>
 , <br />
-&#160;&#160;<a class="el" href="#aeddc9527afbf9755d4252f64ad5d70caa8c2cdafd7125a278e6e0da4c04e29d9e">TAU_NEUTRINO</a>
-, <a class="el" href="#aeddc9527afbf9755d4252f64ad5d70caa2712e9cfc69c4ee0c4ed136338acb6cc">TAU_ANTINEUTRINO</a>
+&#160;&#160;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa8c2cdafd7125a278e6e0da4c04e29d9e">TAU_NEUTRINO</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70caa2712e9cfc69c4ee0c4ed136338acb6cc">TAU_ANTINEUTRINO</a>
 <br />
  }</td></tr>
-<tr class="memdesc:aeddc9527afbf9755d4252f64ad5d70ca"><td class="mdescLeft">&#160;</td><td class="mdescRight">Enumeration of neutrino flavors (for potential extensions and tagging).  <a href="#aeddc9527afbf9755d4252f64ad5d70ca">More...</a><br /></td></tr>
+<tr class="memdesc:aeddc9527afbf9755d4252f64ad5d70ca"><td class="mdescLeft">&#160;</td><td class="mdescRight">Enumeration of neutrino flavors (for potential extensions and tagging).  <a href="namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70ca">More...</a><br /></td></tr>
 <tr class="separator:aeddc9527afbf9755d4252f64ad5d70ca"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a15ca7b1a1951c131fddb9eb011d59550" id="r_a15ca7b1a1951c131fddb9eb011d59550"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a15ca7b1a1951c131fddb9eb011d59550">WeakMapError</a> { <a class="el" href="#a15ca7b1a1951c131fddb9eb011d59550a3659baf2b06bba6c02bad8316d517761">SPECIES_NOT_FOUND</a>
-, <a class="el" href="#a15ca7b1a1951c131fddb9eb011d59550a9a10f345b0f755d461a8673a5e9ef6b4">UNKNOWN_ERROR</a>
+<tr class="memitem:a15ca7b1a1951c131fddb9eb011d59550" id="r_a15ca7b1a1951c131fddb9eb011d59550"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550">WeakMapError</a> { <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550a3659baf2b06bba6c02bad8316d517761">SPECIES_NOT_FOUND</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550a9a10f345b0f755d461a8673a5e9ef6b4">UNKNOWN_ERROR</a>
  }</td></tr>
-<tr class="memdesc:a15ca7b1a1951c131fddb9eb011d59550"><td class="mdescLeft">&#160;</td><td class="mdescRight">Lookup errors for WeakReactionMap queries.  <a href="#a15ca7b1a1951c131fddb9eb011d59550">More...</a><br /></td></tr>
+<tr class="memdesc:a15ca7b1a1951c131fddb9eb011d59550"><td class="mdescLeft">&#160;</td><td class="mdescRight">Lookup errors for WeakReactionMap queries.  <a href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550">More...</a><br /></td></tr>
 <tr class="separator:a15ca7b1a1951c131fddb9eb011d59550"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a3fc4243d5c894779b986110c3a1ee1d4" id="r_a3fc4243d5c894779b986110c3a1ee1d4"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3fc4243d5c894779b986110c3a1ee1d4">InterpolationErrorType</a> { <a class="el" href="#a3fc4243d5c894779b986110c3a1ee1d4a1516ba0949425312ba92ea385c80dc7a">BOUNDS_ERROR</a>
-, <a class="el" href="#a3fc4243d5c894779b986110c3a1ee1d4acc038b1c5dbfcede2eaa525fe0e2379d">UNKNOWN_SPECIES_ERROR</a>
-, <a class="el" href="#a3fc4243d5c894779b986110c3a1ee1d4a9a10f345b0f755d461a8673a5e9ef6b4">UNKNOWN_ERROR</a>
+<tr class="memitem:a3fc4243d5c894779b986110c3a1ee1d4" id="r_a3fc4243d5c894779b986110c3a1ee1d4"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4">InterpolationErrorType</a> { <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4a1516ba0949425312ba92ea385c80dc7a">BOUNDS_ERROR</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4acc038b1c5dbfcede2eaa525fe0e2379d">UNKNOWN_SPECIES_ERROR</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4a9a10f345b0f755d461a8673a5e9ef6b4">UNKNOWN_ERROR</a>
  }</td></tr>
-<tr class="memdesc:a3fc4243d5c894779b986110c3a1ee1d4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Error categories for interpolation attempts.  <a href="#a3fc4243d5c894779b986110c3a1ee1d4">More...</a><br /></td></tr>
+<tr class="memdesc:a3fc4243d5c894779b986110c3a1ee1d4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Error categories for interpolation attempts.  <a href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4">More...</a><br /></td></tr>
 <tr class="separator:a3fc4243d5c894779b986110c3a1ee1d4"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a5e6ecdf02b9748cf1b0a15a5cc1b34ae" id="r_a5e6ecdf02b9748cf1b0a15a5cc1b34ae"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">TableAxes</a> { <a class="el" href="#a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755">T9</a>
-, <a class="el" href="#a5e6ecdf02b9748cf1b0a15a5cc1b34aea1448b5920e7c95f07cbc08d3ba5b9746">LOG_RHOYE</a>
-, <a class="el" href="#a5e6ecdf02b9748cf1b0a15a5cc1b34aea5257ed2407fcbb45ab05897fdea80c2b">MUE</a>
+<tr class="memitem:a5e6ecdf02b9748cf1b0a15a5cc1b34ae" id="r_a5e6ecdf02b9748cf1b0a15a5cc1b34ae"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">TableAxes</a> { <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea2f0355649dad31dc33ebe251d9f72755">T9</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea1448b5920e7c95f07cbc08d3ba5b9746">LOG_RHOYE</a>
+, <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34aea5257ed2407fcbb45ab05897fdea80c2b">MUE</a>
  }</td></tr>
-<tr class="memdesc:a5e6ecdf02b9748cf1b0a15a5cc1b34ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Axes of the interpolation table.  <a href="#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">More...</a><br /></td></tr>
+<tr class="memdesc:a5e6ecdf02b9748cf1b0a15a5cc1b34ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Axes of the interpolation table.  <a href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">More...</a><br /></td></tr>
 <tr class="separator:a5e6ecdf02b9748cf1b0a15a5cc1b34ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:a81f6133710abef28d9d2b030fdbaaeef" id="r_a81f6133710abef28d9d2b030fdbaaeef"><td class="memItemLeft" align="right" valign="top">constexpr std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a81f6133710abef28d9d2b030fdbaaeef">weak_reaction_type_name</a> (const <a class="el" href="#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a> t) noexcept</td></tr>
+<tr class="memitem:a81f6133710abef28d9d2b030fdbaaeef" id="r_a81f6133710abef28d9d2b030fdbaaeef"><td class="memItemLeft" align="right" valign="top">constexpr std::string_view&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a81f6133710abef28d9d2b030fdbaaeef">weak_reaction_type_name</a> (const <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a> t) noexcept</td></tr>
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 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="var-members" name="var-members"></a>
 Variables</h2></td></tr>
-<tr class="memitem:ac48364695089056d9a9b10689c4338e7" id="r_ac48364695089056d9a9b10689c4338e7"><td class="memItemLeft" align="right" valign="top">static constexpr std::array&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1_rate_data_row.html">RateDataRow</a>, 77400 &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac48364695089056d9a9b10689c4338e7">UNIFIED_WEAK_DATA</a></td></tr>
+<tr class="memitem:ac48364695089056d9a9b10689c4338e7" id="r_ac48364695089056d9a9b10689c4338e7"><td class="memItemLeft" align="right" valign="top">static constexpr std::array&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html">RateDataRow</a>, 77400 &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ac48364695089056d9a9b10689c4338e7">UNIFIED_WEAK_DATA</a></td></tr>
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-<tr class="memdesc:a7a262a98e1956c33645bad4eb4e40c7a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable names for <a class="el" href="#a3fc4243d5c894779b986110c3a1ee1d4" title="Error categories for interpolation attempts.">InterpolationErrorType</a>.  <br /></td></tr>
+<tr class="memitem:a7a262a98e1956c33645bad4eb4e40c7a" id="r_a7a262a98e1956c33645bad4eb4e40c7a"><td class="memItemLeft" align="right" valign="top">std::unordered_map&lt; <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4">InterpolationErrorType</a>, std::string_view &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a7a262a98e1956c33645bad4eb4e40c7a">InterpolationErrorTypeMap</a></td></tr>
+<tr class="memdesc:a7a262a98e1956c33645bad4eb4e40c7a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable names for InterpolationErrorType.  <br /></td></tr>
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-          <td class="memname">enum class <a class="el" href="#a3fc4243d5c894779b986110c3a1ee1d4">gridfire::rates::weak::InterpolationErrorType</a></td>
+          <td class="memname">enum class <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4">gridfire::rates::weak::InterpolationErrorType</a></td>
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+          <td class="memname">enum class <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">gridfire::rates::weak::TableAxes</a></td>
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         <tr>
-          <td class="memname">enum class <a class="el" href="#a15ca7b1a1951c131fddb9eb011d59550">gridfire::rates::weak::WeakMapError</a></td>
+          <td class="memname">enum class <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550">gridfire::rates::weak::WeakMapError</a></td>
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-<span class="mlabels"><span class="mlabel strong">strong</span></span>  </td>
+<span class="mlabels"><span class="mlabel">strong</span></span>  </td>
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-<p>Lookup errors for <a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html" title="Index of available weak reactions keyed by species.">WeakReactionMap</a> queries. </p>
+<p>Lookup errors for <a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html" title="Index of available weak reactions keyed by species.">WeakReactionMap</a> queries. </p>
 <table class="fieldtable">
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         <tr>
-          <td class="memname">std::string_view gridfire::rates::weak::weak_reaction_type_name </td>
+          <td class="memname">constexpr std::string_view gridfire::rates::weak::weak_reaction_type_name </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a></td>          <td class="paramname"><span class="paramname"><em>t</em></span></td><td>)</td>
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-<span class="mlabels"><span class="mlabel constexpr">constexpr</span><span class="mlabel noexcept">noexcept</span></span>  </td>
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+          <td class="memname">std::unordered_map&lt;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4">InterpolationErrorType</a>, std::string_view&gt; gridfire::rates::weak::InterpolationErrorTypeMap</td>
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 <b>Initial value:</b><div class="fragment"><div class="line">= {</div>
-<div class="line">        {<a class="code hl_enumvalue" href="#a3fc4243d5c894779b986110c3a1ee1d4a1516ba0949425312ba92ea385c80dc7a">InterpolationErrorType::BOUNDS_ERROR</a>, <span class="stringliteral">&quot;Bounds Error&quot;</span>},</div>
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-<div class="line">        {<a class="code hl_enumvalue" href="#a3fc4243d5c894779b986110c3a1ee1d4a9a10f345b0f755d461a8673a5e9ef6b4">InterpolationErrorType::UNKNOWN_ERROR</a>, <span class="stringliteral">&quot;Unknown Error&quot;</span>}</div>
+<div class="line">        {InterpolationErrorType::BOUNDS_ERROR, <span class="stringliteral">&quot;Bounds Error&quot;</span>},</div>
+<div class="line">        {InterpolationErrorType::UNKNOWN_SPECIES_ERROR, <span class="stringliteral">&quot;Unknown Species Error&quot;</span>},</div>
+<div class="line">        {InterpolationErrorType::UNKNOWN_ERROR, <span class="stringliteral">&quot;Unknown Error&quot;</span>}</div>
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-<p>Human-readable names for <a class="el" href="#a3fc4243d5c894779b986110c3a1ee1d4" title="Error categories for interpolation attempts.">InterpolationErrorType</a>. </p>
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+    [ "WeakReaction", "classgridfire_1_1rates_1_1weak_1_1WeakReaction.html", "classgridfire_1_1rates_1_1weak_1_1WeakReaction" ],
+    [ "WeakReactionEntry", "structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html", "structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry" ],
+    [ "WeakReactionMap", "classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html", "classgridfire_1_1rates_1_1weak_1_1WeakReactionMap" ],
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+          <td class="memname">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">reaction::ReactionSet</a> &amp; gridfire::reaclib::get_all_reaclib_reactions </td>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html">ReaclibReaction</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Represents a single nuclear reaction from a specific data source.  <a href="classgridfire_1_1reaction_1_1_reaction.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Represents a single nuclear reaction from a specific data source.  <a href="classgridfire_1_1reaction_1_1Reaction.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1_weak_reaclib_reaction.html">WeakReaclibReaction</a></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html">WeakReaclibReaction</a></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="enum-members" name="enum-members"></a>
 Enumerations</h2></td></tr>
-<tr class="memitem:a026997f11e811fa7754ac9121c4ba74e" id="r_a026997f11e811fa7754ac9121c4ba74e"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a> { <br />
-&#160;&#160;<a class="el" href="#a026997f11e811fa7754ac9121c4ba74ea32c7d8943bec86a6d7d5e03598670ca8">WEAK</a>
-, <a class="el" href="#a026997f11e811fa7754ac9121c4ba74eaf9885ed04411bef7b70f78b643c6a220">REACLIB</a>
-, <a class="el" href="#a026997f11e811fa7754ac9121c4ba74eab736eb13fff62c962f63232ec57f2692">REACLIB_WEAK</a>
-, <a class="el" href="#a026997f11e811fa7754ac9121c4ba74ea32b0fb6c82a2ec42865b2c823216baa9">LOGICAL_REACLIB</a>
+<tr class="memitem:a026997f11e811fa7754ac9121c4ba74e" id="r_a026997f11e811fa7754ac9121c4ba74e"><td class="memItemLeft" align="right" valign="top">enum class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a> { <br />
+&#160;&#160;<a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74ea32c7d8943bec86a6d7d5e03598670ca8">WEAK</a>
+, <a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74eaf9885ed04411bef7b70f78b643c6a220">REACLIB</a>
+, <a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74eab736eb13fff62c962f63232ec57f2692">REACLIB_WEAK</a>
+, <a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74ea32b0fb6c82a2ec42865b2c823216baa9">LOGICAL_REACLIB</a>
 , <br />
-&#160;&#160;<a class="el" href="#a026997f11e811fa7754ac9121c4ba74ea9259a6415351c8baa03c61926bdd5b0c">LOGICAL_REACLIB_WEAK</a>
+&#160;&#160;<a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74ea9259a6415351c8baa03c61926bdd5b0c">LOGICAL_REACLIB_WEAK</a>
 <br />
  }</td></tr>
 <tr class="separator:a026997f11e811fa7754ac9121c4ba74e"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:a5f8afcf8ff8dc0acdb510ae621d655be" id="r_a5f8afcf8ff8dc0acdb510ae621d655be"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a5f8afcf8ff8dc0acdb510ae621d655be">reaction_is_weak</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;reaction)</td></tr>
+<tr class="memitem:a5f8afcf8ff8dc0acdb510ae621d655be" id="r_a5f8afcf8ff8dc0acdb510ae621d655be"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaction.html#a5f8afcf8ff8dc0acdb510ae621d655be">reaction_is_weak</a> (const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &amp;reaction)</td></tr>
 <tr class="separator:a5f8afcf8ff8dc0acdb510ae621d655be"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:af34403cccdb4a091e979f0f895be2f8c" id="r_af34403cccdb4a091e979f0f895be2f8c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#af34403cccdb4a091e979f0f895be2f8c">packReactionSet</a> (const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;reactionSet)</td></tr>
+<tr class="memitem:af34403cccdb4a091e979f0f895be2f8c" id="r_af34403cccdb4a091e979f0f895be2f8c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaction.html#af34403cccdb4a091e979f0f895be2f8c">packReactionSet</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> &amp;reactionSet)</td></tr>
 <tr class="separator:af34403cccdb4a091e979f0f895be2f8c"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="var-members" name="var-members"></a>
 Variables</h2></td></tr>
-<tr class="memitem:ac06a7c50ac58fb2f901d778fc30cd1cf" id="r_ac06a7c50ac58fb2f901d778fc30cd1cf"><td class="memItemLeft" align="right" valign="top">static std::unordered_map&lt; <a class="el" href="#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a>, std::string &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac06a7c50ac58fb2f901d778fc30cd1cf">ReactionTypeNames</a></td></tr>
+<tr class="memitem:ac06a7c50ac58fb2f901d778fc30cd1cf" id="r_ac06a7c50ac58fb2f901d778fc30cd1cf"><td class="memItemLeft" align="right" valign="top">static std::unordered_map&lt; <a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a>, std::string &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaction.html#ac06a7c50ac58fb2f901d778fc30cd1cf">ReactionTypeNames</a></td></tr>
 <tr class="separator:ac06a7c50ac58fb2f901d778fc30cd1cf"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a773ef58975dc959e4ae03e2e677ab54f" id="r_a773ef58975dc959e4ae03e2e677ab54f"><td class="memItemLeft" align="right" valign="top">static std::unordered_map&lt; <a class="el" href="#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a>, std::string &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a773ef58975dc959e4ae03e2e677ab54f">ReactionPhysicalTypeNames</a></td></tr>
+<tr class="memitem:a773ef58975dc959e4ae03e2e677ab54f" id="r_a773ef58975dc959e4ae03e2e677ab54f"><td class="memItemLeft" align="right" valign="top">static std::unordered_map&lt; <a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a>, std::string &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaction.html#a773ef58975dc959e4ae03e2e677ab54f">ReactionPhysicalTypeNames</a></td></tr>
 <tr class="separator:a773ef58975dc959e4ae03e2e677ab54f"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Enumeration Type Documentation</h2>
@@ -164,12 +157,12 @@ Variables</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">enum class <a class="el" href="#a026997f11e811fa7754ac9121c4ba74e">gridfire::reaction::ReactionType</a></td>
+          <td class="memname">enum class <a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">gridfire::reaction::ReactionType</a></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel strong">strong</span></span>  </td>
+<span class="mlabels"><span class="mlabel">strong</span></span>  </td>
   </tr>
 </table>
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@@ -191,9 +184,10 @@ Variables</h2></td></tr>
 <div class="memproto">
       <table class="memname">
         <tr>
-          <td class="memname"><a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> gridfire::reaction::packReactionSet </td>
+          <td class="memname"><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> gridfire::reaction::packReactionSet </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction_set.html">ReactionSet</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reactionSet</em></span></td><td>)</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>reactionSet</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -210,7 +204,8 @@ Variables</h2></td></tr>
         <tr>
           <td class="memname">bool gridfire::reaction::reaction_is_weak </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">Reaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reaction</em></span></td><td>)</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -229,27 +224,22 @@ Variables</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">std::unordered_map&lt;<a class="el" href="#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a>, std::string&gt; gridfire::reaction::ReactionPhysicalTypeNames</td>
+          <td class="memname">std::unordered_map&lt;<a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a>, std::string&gt; gridfire::reaction::ReactionPhysicalTypeNames</td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel static">static</span></span>  </td>
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
 <b>Initial value:</b><div class="fragment"><div class="line">= {</div>
-<div class="line">        {<a class="code hl_enumvalue" href="#a026997f11e811fa7754ac9121c4ba74ea32c7d8943bec86a6d7d5e03598670ca8">ReactionType::WEAK</a>, <span class="stringliteral">&quot;Weak&quot;</span>},</div>
-<div class="line">        {<a class="code hl_enumvalue" href="#a026997f11e811fa7754ac9121c4ba74eaf9885ed04411bef7b70f78b643c6a220">ReactionType::REACLIB</a>, <span class="stringliteral">&quot;Strong&quot;</span>},</div>
-<div class="line">        {<a class="code hl_enumvalue" href="#a026997f11e811fa7754ac9121c4ba74ea32b0fb6c82a2ec42865b2c823216baa9">ReactionType::LOGICAL_REACLIB</a>, <span class="stringliteral">&quot;Strong&quot;</span>},</div>
-<div class="line">        {<a class="code hl_enumvalue" href="#a026997f11e811fa7754ac9121c4ba74eab736eb13fff62c962f63232ec57f2692">ReactionType::REACLIB_WEAK</a>, <span class="stringliteral">&quot;Weak&quot;</span>},</div>
-<div class="line">        {<a class="code hl_enumvalue" href="#a026997f11e811fa7754ac9121c4ba74ea9259a6415351c8baa03c61926bdd5b0c">ReactionType::LOGICAL_REACLIB_WEAK</a>, <span class="stringliteral">&quot;Weak&quot;</span>},</div>
+<div class="line">        {ReactionType::WEAK, <span class="stringliteral">&quot;Weak&quot;</span>},</div>
+<div class="line">        {ReactionType::REACLIB, <span class="stringliteral">&quot;Strong&quot;</span>},</div>
+<div class="line">        {ReactionType::LOGICAL_REACLIB, <span class="stringliteral">&quot;Strong&quot;</span>},</div>
+<div class="line">        {ReactionType::REACLIB_WEAK, <span class="stringliteral">&quot;Weak&quot;</span>},</div>
+<div class="line">        {ReactionType::LOGICAL_REACLIB_WEAK, <span class="stringliteral">&quot;Weak&quot;</span>},</div>
 <div class="line">    }</div>
-<div class="ttc" id="anamespacegridfire_1_1reaction_html_a026997f11e811fa7754ac9121c4ba74ea32b0fb6c82a2ec42865b2c823216baa9"><div class="ttname"><a href="#a026997f11e811fa7754ac9121c4ba74ea32b0fb6c82a2ec42865b2c823216baa9">gridfire::reaction::ReactionType::LOGICAL_REACLIB</a></div><div class="ttdeci">@ LOGICAL_REACLIB</div><div class="ttdef"><b>Definition</b> reaction.h:30</div></div>
-<div class="ttc" id="anamespacegridfire_1_1reaction_html_a026997f11e811fa7754ac9121c4ba74ea32c7d8943bec86a6d7d5e03598670ca8"><div class="ttname"><a href="#a026997f11e811fa7754ac9121c4ba74ea32c7d8943bec86a6d7d5e03598670ca8">gridfire::reaction::ReactionType::WEAK</a></div><div class="ttdeci">@ WEAK</div><div class="ttdef"><b>Definition</b> reaction.h:27</div></div>
-<div class="ttc" id="anamespacegridfire_1_1reaction_html_a026997f11e811fa7754ac9121c4ba74ea9259a6415351c8baa03c61926bdd5b0c"><div class="ttname"><a href="#a026997f11e811fa7754ac9121c4ba74ea9259a6415351c8baa03c61926bdd5b0c">gridfire::reaction::ReactionType::LOGICAL_REACLIB_WEAK</a></div><div class="ttdeci">@ LOGICAL_REACLIB_WEAK</div><div class="ttdef"><b>Definition</b> reaction.h:31</div></div>
-<div class="ttc" id="anamespacegridfire_1_1reaction_html_a026997f11e811fa7754ac9121c4ba74eab736eb13fff62c962f63232ec57f2692"><div class="ttname"><a href="#a026997f11e811fa7754ac9121c4ba74eab736eb13fff62c962f63232ec57f2692">gridfire::reaction::ReactionType::REACLIB_WEAK</a></div><div class="ttdeci">@ REACLIB_WEAK</div><div class="ttdef"><b>Definition</b> reaction.h:29</div></div>
-<div class="ttc" id="anamespacegridfire_1_1reaction_html_a026997f11e811fa7754ac9121c4ba74eaf9885ed04411bef7b70f78b643c6a220"><div class="ttname"><a href="#a026997f11e811fa7754ac9121c4ba74eaf9885ed04411bef7b70f78b643c6a220">gridfire::reaction::ReactionType::REACLIB</a></div><div class="ttdeci">@ REACLIB</div><div class="ttdef"><b>Definition</b> reaction.h:28</div></div>
 </div><!-- fragment -->
 </div>
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@@ -263,21 +253,21 @@ Variables</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">std::unordered_map&lt;<a class="el" href="#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a>, std::string&gt; gridfire::reaction::ReactionTypeNames</td>
+          <td class="memname">std::unordered_map&lt;<a class="el" href="namespacegridfire_1_1reaction.html#a026997f11e811fa7754ac9121c4ba74e">ReactionType</a>, std::string&gt; gridfire::reaction::ReactionTypeNames</td>
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       </table>
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+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
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 <b>Initial value:</b><div class="fragment"><div class="line">= {</div>
-<div class="line">        {<a class="code hl_enumvalue" href="#a026997f11e811fa7754ac9121c4ba74ea32c7d8943bec86a6d7d5e03598670ca8">ReactionType::WEAK</a>, <span class="stringliteral">&quot;weak&quot;</span>},</div>
-<div class="line">        {<a class="code hl_enumvalue" href="#a026997f11e811fa7754ac9121c4ba74eaf9885ed04411bef7b70f78b643c6a220">ReactionType::REACLIB</a>, <span class="stringliteral">&quot;reaclib&quot;</span>},</div>
-<div class="line">        {<a class="code hl_enumvalue" href="#a026997f11e811fa7754ac9121c4ba74eab736eb13fff62c962f63232ec57f2692">ReactionType::REACLIB_WEAK</a>, <span class="stringliteral">&quot;reaclib_weak&quot;</span>},</div>
-<div class="line">        {<a class="code hl_enumvalue" href="#a026997f11e811fa7754ac9121c4ba74ea32b0fb6c82a2ec42865b2c823216baa9">ReactionType::LOGICAL_REACLIB</a>, <span class="stringliteral">&quot;logical_reaclib&quot;</span>},</div>
-<div class="line">        {<a class="code hl_enumvalue" href="#a026997f11e811fa7754ac9121c4ba74ea9259a6415351c8baa03c61926bdd5b0c">ReactionType::LOGICAL_REACLIB_WEAK</a>, <span class="stringliteral">&quot;logical_reaclib_weak&quot;</span>},</div>
+<div class="line">        {ReactionType::WEAK, <span class="stringliteral">&quot;weak&quot;</span>},</div>
+<div class="line">        {ReactionType::REACLIB, <span class="stringliteral">&quot;reaclib&quot;</span>},</div>
+<div class="line">        {ReactionType::REACLIB_WEAK, <span class="stringliteral">&quot;reaclib_weak&quot;</span>},</div>
+<div class="line">        {ReactionType::LOGICAL_REACLIB, <span class="stringliteral">&quot;logical_reaclib&quot;</span>},</div>
+<div class="line">        {ReactionType::LOGICAL_REACLIB_WEAK, <span class="stringliteral">&quot;logical_reaclib_weak&quot;</span>},</div>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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index 82d88400..84ba88dc 100644
--- a/docs/html/namespacegridfire_1_1reaction.js
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@@ -1,11 +1,11 @@
 var namespacegridfire_1_1reaction =
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 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">BareScreeningModel</a></td></tr>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html">BareScreeningModel</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A screening model that applies no screening effect.  <a href="classgridfire_1_1screening_1_1BareScreeningModel.html#details">More...</a><br /></td></tr>
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1_intermediate_screening_model.html">IntermediateScreeningModel</a></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1IntermediateScreeningModel.html">IntermediateScreeningModel</a></td></tr>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">ScreeningModel</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">An abstract base class for plasma screening models.  <a href="classgridfire_1_1screening_1_1ScreeningModel.html#details">More...</a><br /></td></tr>
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">WeakScreeningModel</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Implements the weak screening model based on the Debye-Hückel approximation.  <a href="classgridfire_1_1screening_1_1_weak_screening_model.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1WeakScreeningModel.html">WeakScreeningModel</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Implements the weak screening model based on the Debye-Hückel approximation.  <a href="classgridfire_1_1screening_1_1WeakScreeningModel.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
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-, <a class="el" href="#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8">WEAK</a>
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-<tr class="memdesc:aa82aafbc4f8c28d0a75b60798e3a7d25"><td class="mdescLeft">&#160;</td><td class="mdescRight">Enumerates the available plasma screening models.  <a href="#aa82aafbc4f8c28d0a75b60798e3a7d25">More...</a><br /></td></tr>
+<tr class="memdesc:aa82aafbc4f8c28d0a75b60798e3a7d25"><td class="mdescLeft">&#160;</td><td class="mdescRight">Enumerates the available plasma screening models.  <a href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">More...</a><br /></td></tr>
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-<h2 class="memtitle"><span class="permalink"><a href="#ae7dd1a7ccb7bf3c05084094ab008d8a3">&#9670;&#160;</a></span>ADDouble</h2>
+<a id="a95b9ab18f211cc0b81b05219ff92ecba" name="a95b9ab18f211cc0b81b05219ff92ecba"></a>
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+          <td class="memname">typedef CppAD::AD&lt; double &gt; <a class="el" href="namespacegridfire_1_1screening.html#a95b9ab18f211cc0b81b05219ff92ecba">gridfire::screening::ADDouble</a></td>
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+          <td class="memname">enum class <a class="el" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">gridfire::screening::ScreeningType</a></td>
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+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html">ScreeningModel</a> &gt; gridfire::screening::selectScreeningModel </td>
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 <p>A factory function to select and create a screening model. </p>
-<p>This function returns a <code>std::unique_ptr</code> to a concrete implementation of the <code><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html" title="An abstract base class for plasma screening models.">ScreeningModel</a></code> abstract base class, based on the specified <code><a class="el" href="#aa82aafbc4f8c28d0a75b60798e3a7d25" title="Enumerates the available plasma screening models.">ScreeningType</a></code>. This allows for easy switching between different screening prescriptions at runtime.</p>
+<p>This function returns a <code>std::unique_ptr</code> to a concrete implementation of the <code><a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html" title="An abstract base class for plasma screening models.">ScreeningModel</a></code> abstract base class, based on the specified <code>ScreeningType</code>. This allows for easy switching between different screening prescriptions at runtime.</p>
 <dl class="params"><dt>Parameters</dt><dd>
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+    <tr><td class="paramname">type</td><td>The <code>ScreeningType</code> enum value specifying which model to create. </td></tr>
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   </dd>
 </dl>
-<dl class="section return"><dt>Returns</dt><dd>A <code>std::unique_ptr&lt;<a class="el" href="classgridfire_1_1screening_1_1_screening_model.html" title="An abstract base class for plasma screening models.">ScreeningModel</a>&gt;</code> holding an instance of the requested screening model.</dd></dl>
-<p><b>Algorithm</b> The function uses a <code>switch</code> statement to determine which concrete model to instantiate. If the provided <code>type</code> does not match a known case, it defaults to creating a <code><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html" title="A screening model that applies no screening effect.">BareScreeningModel</a></code> to ensure safe behavior.</p>
+<dl class="section return"><dt>Returns</dt><dd>A <code>std::unique_ptr&lt;<a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html" title="An abstract base class for plasma screening models.">ScreeningModel</a>&gt;</code> holding an instance of the requested screening model.</dd></dl>
+<p><b>Algorithm</b> The function uses a <code>switch</code> statement to determine which concrete model to instantiate. If the provided <code>type</code> does not match a known case, it defaults to creating a <code><a class="el" href="classgridfire_1_1screening_1_1BareScreeningModel.html" title="A screening model that applies no screening effect.">BareScreeningModel</a></code> to ensure safe behavior.</p>
 <p><b>Post-conditions</b> </p><ul>
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+<li>A non-null <code>std::unique_ptr&lt;<a class="el" href="classgridfire_1_1screening_1_1ScreeningModel.html" title="An abstract base class for plasma screening models.">ScreeningModel</a>&gt;</code> is always returned.</li>
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 <p><b>Usage</b> </p><div class="fragment"><div class="line"><span class="comment">// Select the weak screening model</span></div>
-<div class="line"><span class="keyword">auto</span> screening_model = <a class="code hl_function" href="#a6ca8556d27ac373e176f5b23437c416e">gridfire::screening::selectScreeningModel</a>(<a class="code hl_enumvalue" href="#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8">gridfire::screening::ScreeningType::WEAK</a>);</div>
+<div class="line"><span class="keyword">auto</span> screening_model = <a class="code hl_function" href="namespacegridfire_1_1screening.html#a6ca8556d27ac373e176f5b23437c416e">gridfire::screening::selectScreeningModel</a>(<a class="code hl_enumvalue" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8">gridfire::screening::ScreeningType::WEAK</a>);</div>
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 <div class="line"><span class="comment">// Use the model to calculate screening factors</span></div>
 <div class="line"><span class="comment">// (assuming other parameters are initialized)</span></div>
 <div class="line">std::vector&lt;double&gt; factors = screening_model-&gt;calculateScreeningFactors(</div>
 <div class="line">    reactions, species, Y, T9, rho</div>
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-    [ "ADDouble", "namespacegridfire_1_1screening.html#ae7dd1a7ccb7bf3c05084094ab008d8a3", null ],
+    [ "BareScreeningModel", "classgridfire_1_1screening_1_1BareScreeningModel.html", "classgridfire_1_1screening_1_1BareScreeningModel" ],
+    [ "IntermediateScreeningModel", "classgridfire_1_1screening_1_1IntermediateScreeningModel.html", "classgridfire_1_1screening_1_1IntermediateScreeningModel" ],
+    [ "ScreeningModel", "classgridfire_1_1screening_1_1ScreeningModel.html", "classgridfire_1_1screening_1_1ScreeningModel" ],
+    [ "WeakScreeningModel", "classgridfire_1_1screening_1_1WeakScreeningModel.html", "classgridfire_1_1screening_1_1WeakScreeningModel" ],
+    [ "ADDouble", "namespacegridfire_1_1screening.html#a95b9ab18f211cc0b81b05219ff92ecba", null ],
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1CVODESolverStrategy.html">CVODESolverStrategy</a></td></tr>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">NetworkSolverStrategy</a></td></tr>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1SolverContextBase.html">SolverContextBase</a></td></tr>
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-<h2 class="memtitle"><span class="permalink"><a href="#ade01aa38cf726210f9d2a8f8567d6633">&#9670;&#160;</a></span>DynamicNetworkSolverStrategy</h2>
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+<h2 class="memtitle"><span class="permalink"><a href="#aa32e3cd33f25e8743556a54b6847cdc0">&#9670;&#160;</a></span>DynamicNetworkSolverStrategy</h2>
 
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+          <td class="memname">using <a class="el" href="namespacegridfire_1_1solver.html#aa32e3cd33f25e8743556a54b6847cdc0">gridfire::solver::DynamicNetworkSolverStrategy</a> = typedef <a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html">NetworkSolverStrategy</a>&lt;<a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a>&gt;</td>
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-    [ "DynamicNetworkSolverStrategy", "namespacegridfire_1_1solver.html#ade01aa38cf726210f9d2a8f8567d6633", null ]
+    [ "CVODESolverStrategy", "classgridfire_1_1solver_1_1CVODESolverStrategy.html", "classgridfire_1_1solver_1_1CVODESolverStrategy" ],
+    [ "NetworkSolverStrategy", "classgridfire_1_1solver_1_1NetworkSolverStrategy.html", "classgridfire_1_1solver_1_1NetworkSolverStrategy" ],
+    [ "SolverContextBase", "classgridfire_1_1solver_1_1SolverContextBase.html", "classgridfire_1_1solver_1_1SolverContextBase" ],
+    [ "DynamicNetworkSolverStrategy", "namespacegridfire_1_1solver.html#aa32e3cd33f25e8743556a54b6847cdc0", null ]
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1AndTrigger.html">AndTrigger</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logical conjunction of two triggers with short-circuit evaluation.  <a href="classgridfire_1_1trigger_1_1AndTrigger.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_every_nth_trigger.html">EveryNthTrigger</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Pass-through trigger that fires every Nth time its child trigger is true.  <a href="classgridfire_1_1trigger_1_1_every_nth_trigger.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html">EveryNthTrigger</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Pass-through trigger that fires every Nth time its child trigger is true.  <a href="classgridfire_1_1trigger_1_1EveryNthTrigger.html#details">More...</a><br /></td></tr>
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_logical_trigger.html">LogicalTrigger</a></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1LogicalTrigger.html">LogicalTrigger</a></td></tr>
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-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logical negation of a trigger.  <a href="classgridfire_1_1trigger_1_1_not_trigger.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1NotTrigger.html">NotTrigger</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logical negation of a trigger.  <a href="classgridfire_1_1trigger_1_1NotTrigger.html#details">More...</a><br /></td></tr>
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_or_trigger.html">OrTrigger</a></td></tr>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html">OrTrigger</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Logical disjunction of two triggers with short-circuit evaluation.  <a href="classgridfire_1_1trigger_1_1OrTrigger.html#details">More...</a><br /></td></tr>
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1_trigger.html">Trigger</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generic trigger interface for signaling events/conditions during integration.  <a href="classgridfire_1_1trigger_1_1_trigger.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generic trigger interface for signaling events/conditions during integration.  <a href="classgridfire_1_1trigger_1_1Trigger.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a></td></tr>
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-<tr class="memdesc:a5e0fe21f3356426f26b109cdeb1edcd9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Pretty-print a <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> explanation tree to std::cout.  <br /></td></tr>
+<tr class="memitem:a5e0fe21f3356426f26b109cdeb1edcd9" id="r_a5e0fe21f3356426f26b109cdeb1edcd9"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger.html#a5e0fe21f3356426f26b109cdeb1edcd9">printWhy</a> (const <a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> &amp;result, const int indent=0)</td></tr>
+<tr class="memdesc:a5e0fe21f3356426f26b109cdeb1edcd9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Pretty-print a <a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> explanation tree to std::cout.  <br /></td></tr>
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-          <td class="paramtype">const <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>result</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> &amp;&#160;</td>
+          <td class="paramname"><em>result</em>, </td>
         </tr>
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+          <td class="paramtype">const int&#160;</td>
+          <td class="paramname"><em>indent</em> = <code>0</code>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
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+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
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 </div><div class="memdoc">
 
-<p>Pretty-print a <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> explanation tree to std::cout. </p>
+<p>Pretty-print a <a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> explanation tree to std::cout. </p>
 <p>Prints one line per node prefixed with Unicode bullets and indentation to visualize the explanation hierarchy. Each line shows [TRUE|FALSE], the node name, and description.</p>
 <dl class="params"><dt>Parameters</dt><dd>
   <table class="params">
-    <tr><td class="paramname">result</td><td>Root <a class="el" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> to print. </td></tr>
+    <tr><td class="paramname">result</td><td>Root <a class="el" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> to print. </td></tr>
     <tr><td class="paramname">indent</td><td>Current indentation level (number of two-space indents); callers typically omit this parameter and let recursion handle it.</td></tr>
   </table>
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-<div class="line"><a class="code hl_struct" href="structgridfire_1_1trigger_1_1_trigger_result.html">TriggerResult</a> leaf{<span class="stringliteral">&quot;A&gt;5&quot;</span>, <span class="stringliteral">&quot;Threshold passed&quot;</span>, <span class="keyword">true</span>, {}};</div>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="keyword">using </span><a class="code hl_struct" href="structgridfire_1_1trigger_1_1TriggerResult.html">gridfire::trigger::TriggerResult</a>;</div>
+<div class="line"><a class="code hl_struct" href="structgridfire_1_1trigger_1_1TriggerResult.html">TriggerResult</a> leaf{<span class="stringliteral">&quot;A&gt;5&quot;</span>, <span class="stringliteral">&quot;Threshold passed&quot;</span>, <span class="keyword">true</span>, {}};</div>
 <div class="line">TriggerResult root{<span class="stringliteral">&quot;AND&quot;</span>, <span class="stringliteral">&quot;Both conditions true&quot;</span>, <span class="keyword">true</span>, {leaf}};</div>
-<div class="line"><a class="code hl_function" href="#a5e0fe21f3356426f26b109cdeb1edcd9">gridfire::trigger::printWhy</a>(root);</div>
-<div class="ttc" id="anamespacegridfire_1_1trigger_html_a5e0fe21f3356426f26b109cdeb1edcd9"><div class="ttname"><a href="#a5e0fe21f3356426f26b109cdeb1edcd9">gridfire::trigger::printWhy</a></div><div class="ttdeci">void printWhy(const TriggerResult &amp;result, const int indent=0)</div><div class="ttdoc">Pretty-print a TriggerResult explanation tree to std::cout.</div><div class="ttdef"><b>Definition</b> trigger_pprint.h:26</div></div>
-<div class="ttc" id="astructgridfire_1_1trigger_1_1_trigger_result_html"><div class="ttname"><a href="structgridfire_1_1trigger_1_1_trigger_result.html">gridfire::trigger::TriggerResult</a></div><div class="ttdef"><b>Definition</b> trigger_result.h:23</div></div>
+<div class="line"><a class="code hl_function" href="namespacegridfire_1_1trigger.html#a5e0fe21f3356426f26b109cdeb1edcd9">gridfire::trigger::printWhy</a>(root);</div>
+<div class="ttc" id="anamespacegridfire_1_1trigger_html_a5e0fe21f3356426f26b109cdeb1edcd9"><div class="ttname"><a href="namespacegridfire_1_1trigger.html#a5e0fe21f3356426f26b109cdeb1edcd9">gridfire::trigger::printWhy</a></div><div class="ttdeci">void printWhy(const TriggerResult &amp;result, const int indent=0)</div><div class="ttdoc">Pretty-print a TriggerResult explanation tree to std::cout.</div><div class="ttdef"><b>Definition</b> trigger_pprint.h:26</div></div>
+<div class="ttc" id="astructgridfire_1_1trigger_1_1TriggerResult_html"><div class="ttname"><a href="structgridfire_1_1trigger_1_1TriggerResult.html">gridfire::trigger::TriggerResult</a></div><div class="ttdef"><b>Definition</b> trigger_result.h:23</div></div>
 </div><!-- fragment --> </dd></dl>
 
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@@ -193,7 +193,7 @@ Functions</h2></td></tr>
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     <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1trigger.html">trigger</a></li>
-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
   </ul>
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diff --git a/docs/html/namespacegridfire_1_1trigger.js b/docs/html/namespacegridfire_1_1trigger.js
index e5dcc177..587e9522 100644
--- a/docs/html/namespacegridfire_1_1trigger.js
+++ b/docs/html/namespacegridfire_1_1trigger.js
@@ -1,12 +1,12 @@
 var namespacegridfire_1_1trigger =
 [
     [ "solver", "namespacegridfire_1_1trigger_1_1solver.html", "namespacegridfire_1_1trigger_1_1solver" ],
-    [ "AndTrigger", "classgridfire_1_1trigger_1_1_and_trigger.html", "classgridfire_1_1trigger_1_1_and_trigger" ],
-    [ "EveryNthTrigger", "classgridfire_1_1trigger_1_1_every_nth_trigger.html", "classgridfire_1_1trigger_1_1_every_nth_trigger" ],
-    [ "LogicalTrigger", "classgridfire_1_1trigger_1_1_logical_trigger.html", null ],
-    [ "NotTrigger", "classgridfire_1_1trigger_1_1_not_trigger.html", "classgridfire_1_1trigger_1_1_not_trigger" ],
-    [ "OrTrigger", "classgridfire_1_1trigger_1_1_or_trigger.html", "classgridfire_1_1trigger_1_1_or_trigger" ],
-    [ "Trigger", "classgridfire_1_1trigger_1_1_trigger.html", "classgridfire_1_1trigger_1_1_trigger" ],
-    [ "TriggerResult", "structgridfire_1_1trigger_1_1_trigger_result.html", "structgridfire_1_1trigger_1_1_trigger_result" ],
+    [ "AndTrigger", "classgridfire_1_1trigger_1_1AndTrigger.html", "classgridfire_1_1trigger_1_1AndTrigger" ],
+    [ "EveryNthTrigger", "classgridfire_1_1trigger_1_1EveryNthTrigger.html", "classgridfire_1_1trigger_1_1EveryNthTrigger" ],
+    [ "LogicalTrigger", "classgridfire_1_1trigger_1_1LogicalTrigger.html", null ],
+    [ "NotTrigger", "classgridfire_1_1trigger_1_1NotTrigger.html", "classgridfire_1_1trigger_1_1NotTrigger" ],
+    [ "OrTrigger", "classgridfire_1_1trigger_1_1OrTrigger.html", "classgridfire_1_1trigger_1_1OrTrigger" ],
+    [ "Trigger", "classgridfire_1_1trigger_1_1Trigger.html", "classgridfire_1_1trigger_1_1Trigger" ],
+    [ "TriggerResult", "structgridfire_1_1trigger_1_1TriggerResult.html", "structgridfire_1_1trigger_1_1TriggerResult" ],
     [ "printWhy", "namespacegridfire_1_1trigger.html#a5e0fe21f3356426f26b109cdeb1edcd9", null ]
 ];
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diff --git a/docs/html/namespacegridfire_1_1trigger_1_1solver.html b/docs/html/namespacegridfire_1_1trigger_1_1solver.html
index 2906b831..db518d49 100644
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@@ -3,18 +3,16 @@
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-<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="generator" content="Doxygen 1.9.8"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
 <title>GridFire: gridfire::trigger::solver Namespace Reference</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
 <link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
 <script type="text/javascript" src="navtreedata.js"></script>
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-<script type="text/javascript" src="resize.js"></script>
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@@ -38,24 +36,19 @@
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-$(function(){initNavTree('namespacegridfire_1_1trigger_1_1solver.html',''); initResizable(true); });
+$(document).ready(function(){initNavTree('namespacegridfire_1_1trigger_1_1solver.html',''); initResizable(); });
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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index 8ae86c9c..936a3c4a 100644
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+++ b/docs/html/namespacegridfire_1_1trigger_1_1solver.js
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+    [ "CVODE", "namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html", "namespacegridfire_1_1trigger_1_1solver_1_1CVODE" ]
 ];
\ No newline at end of file
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+<title>GridFire: gridfire::trigger::solver::CVODE Namespace Reference</title>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#nested-classes">Classes</a> &#124;
+<a href="#func-members">Functions</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::solver::CVODE Namespace Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
+Classes</h2></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html">ConvergenceFailureTrigger</a></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html">OffDiagonalTrigger</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Triggers when any off-diagonal Jacobian entry magnitude exceeds a threshold.  <a href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html">SimulationTimeTrigger</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Triggers when the current simulation time advances by at least a fixed interval.  <a href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html">TimestepCollapseTrigger</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Triggers when the timestep deviates from its recent average beyond a threshold.  <a href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#details">More...</a><br /></td></tr>
+<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
+Functions</h2></td></tr>
+<tr class="memitem:aa2e951d13f36bb742fd27b83caa6d4d5" id="r_aa2e951d13f36bb742fd27b83caa6d4d5"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html#aa2e951d13f36bb742fd27b83caa6d4d5">makeEnginePartitioningTrigger</a> (const double simulationTimeInterval, const double offDiagonalThreshold, const double timestepCollapseRatio, const size_t maxConvergenceFailures)</td></tr>
+<tr class="memdesc:aa2e951d13f36bb742fd27b83caa6d4d5"><td class="mdescLeft">&#160;</td><td class="mdescRight">Compose a trigger suitable for deciding engine re-partitioning during <a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html">CVODE</a> solves.  <br /></td></tr>
+<tr class="separator:aa2e951d13f36bb742fd27b83caa6d4d5"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Function Documentation</h2>
+<a id="aa2e951d13f36bb742fd27b83caa6d4d5" name="aa2e951d13f36bb742fd27b83caa6d4d5"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa2e951d13f36bb742fd27b83caa6d4d5">&#9670;&#160;</a></span>makeEnginePartitioningTrigger()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1trigger_1_1Trigger.html">Trigger</a>&lt; <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a> &gt; &gt; gridfire::trigger::solver::CVODE::makeEnginePartitioningTrigger </td>
+          <td>(</td>
+          <td class="paramtype">const double&#160;</td>
+          <td class="paramname"><em>simulationTimeInterval</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const double&#160;</td>
+          <td class="paramname"><em>offDiagonalThreshold</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const double&#160;</td>
+          <td class="paramname"><em>timestepCollapseRatio</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const size_t&#160;</td>
+          <td class="paramname"><em>maxConvergenceFailures</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Compose a trigger suitable for deciding engine re-partitioning during <a class="el" href="namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html">CVODE</a> solves. </p>
+<p>Policy (as of implementation):</p><ul>
+<li>OR of the following three conditions: 1) Every 1000th firing of SimulationTimeTrigger(simulationTimeInterval) 2) OffDiagonalTrigger(offDiagonalThreshold) 3) Every 10th firing of TimestepCollapseTrigger(timestepGrowthThreshold,
+      timestepGrowthRelative, timestepGrowthWindowSize)</li>
+</ul>
+<p>See <a class="el" href="engine__partitioning__trigger_8cpp.html">engine_partitioning_trigger.cpp</a> for construction details using <a class="el" href="classgridfire_1_1trigger_1_1OrTrigger.html" title="Logical disjunction of two triggers with short-circuit evaluation.">OrTrigger</a> and <a class="el" href="classgridfire_1_1trigger_1_1EveryNthTrigger.html" title="Pass-through trigger that fires every Nth time its child trigger is true.">EveryNthTrigger</a> from <a class="el" href="trigger__logical_8h.html" title="Combinators for composing triggers with boolean logic (AND/OR/NOT/EveryNth).">trigger_logical.h</a>.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">simulationTimeInterval</td><td>Interval used by <a class="el" href="classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html" title="Triggers when the current simulation time advances by at least a fixed interval.">SimulationTimeTrigger</a> (&gt; 0). </td></tr>
+    <tr><td class="paramname">offDiagonalThreshold</td><td>Off-diagonal Jacobian magnitude threshold (&gt;= 0). </td></tr>
+    <tr><td class="paramname">timestepCollapseRatio</td><td>Threshold for timestep deviation (&gt;= 0, and &lt;= 1 when relative). </td></tr>
+    <tr><td class="paramname">maxConvergenceFailures</td><td>Window size for timestep averaging (&gt;= 1 recommended). </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>A unique_ptr to a composed Trigger&lt;TimestepContext&gt; implementing the policy above.</dd></dl>
+<dl class="section note"><dt>Note</dt><dd>The exact policy is subject to change; this function centralizes that decision. </dd></dl>
+
+</div>
+</div>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/namespacegridfire_1_1trigger_1_1solver_1_1CVODE.js b/docs/html/namespacegridfire_1_1trigger_1_1solver_1_1CVODE.js
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+var namespacegridfire_1_1trigger_1_1solver_1_1CVODE =
+[
+    [ "ConvergenceFailureTrigger", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger" ],
+    [ "OffDiagonalTrigger", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger" ],
+    [ "SimulationTimeTrigger", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger" ],
+    [ "TimestepCollapseTrigger", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html", "classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger" ],
+    [ "makeEnginePartitioningTrigger", "namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html#aa2e951d13f36bb742fd27b83caa6d4d5", null ]
+];
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 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions</h2></td></tr>
-<tr class="memitem:a0dc0b71ddae108a47887458c2f3f780e" id="r_a0dc0b71ddae108a47887458c2f3f780e"><td class="memItemLeft" align="right" valign="top">uint_fast32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0dc0b71ddae108a47887458c2f3f780e">hash_atomic</a> (const uint16_t a, const uint8_t z) noexcept</td></tr>
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 <tr class="memdesc:a0dc0b71ddae108a47887458c2f3f780e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Generate a unique hash for an isotope given its mass number (A) and atomic number (Z).  <br /></td></tr>
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-<tr class="memitem:a3d0646bcc1a6fd8df22ac0c758bfd5c4" id="r_a3d0646bcc1a6fd8df22ac0c758bfd5c4"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a3d0646bcc1a6fd8df22ac0c758bfd5c4">formatNuclearTimescaleLogString</a> (const <a class="el" href="classgridfire_1_1engine_1_1_dynamic_engine.html">engine::DynamicEngine</a> &amp;engine, const fourdst::composition::Composition &amp;composition, double T9, double rho)</td></tr>
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 <tr class="memdesc:a3d0646bcc1a6fd8df22ac0c758bfd5c4"><td class="mdescLeft">&#160;</td><td class="mdescRight">Formats a map of nuclear species timescales into a human-readable string.  <br /></td></tr>
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 <tr class="separator:af9f382b1b40867c1e70f062d7fba90cd"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memitem:adf613180bab406ef2bfbb9b79397148e" id="r_adf613180bab406ef2bfbb9b79397148e"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1utils.html#adf613180bab406ef2bfbb9b79397148e">to_json_file</a> (const std::string &amp;filename, const std::vector&lt; std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html">ColumnBase</a> &gt; &gt; &gt; &amp;tables, const std::vector&lt; std::string &gt; &amp;tableNames)</td></tr>
 <tr class="separator:adf613180bab406ef2bfbb9b79397148e"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="var-members" name="var-members"></a>
 Variables</h2></td></tr>
-<tr class="memitem:a06d386929b2274e2593b97868be2ac51" id="r_a06d386929b2274e2593b97868be2ac51"><td class="memItemLeft" align="right" valign="top">static std::unordered_map&lt; int, std::string &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a06d386929b2274e2593b97868be2ac51">cvode_ret_code_map</a></td></tr>
+<tr class="memitem:a06d386929b2274e2593b97868be2ac51" id="r_a06d386929b2274e2593b97868be2ac51"><td class="memItemLeft" align="right" valign="top">static std::unordered_map&lt; int, std::string &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1utils.html#a06d386929b2274e2593b97868be2ac51">cvode_ret_code_map</a></td></tr>
 <tr class="separator:a06d386929b2274e2593b97868be2ac51"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a96fc2701cfd6cb8172282e9999fe4b34" id="r_a96fc2701cfd6cb8172282e9999fe4b34"><td class="memItemLeft" align="right" valign="top">static std::unordered_map&lt; int, std::string &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a96fc2701cfd6cb8172282e9999fe4b34">kinsol_ret_code_map</a></td></tr>
+<tr class="memitem:a96fc2701cfd6cb8172282e9999fe4b34" id="r_a96fc2701cfd6cb8172282e9999fe4b34"><td class="memItemLeft" align="right" valign="top">static std::unordered_map&lt; int, std::string &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1utils.html#a96fc2701cfd6cb8172282e9999fe4b34">kinsol_ret_code_map</a></td></tr>
 <tr class="separator:a96fc2701cfd6cb8172282e9999fe4b34"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Enumeration Type Documentation</h2>
@@ -198,12 +191,12 @@ Variables</h2></td></tr>
   <td class="mlabels-left">
       <table class="memname">
         <tr>
-          <td class="memname">enum class <a class="el" href="#a7cea622c9311bfd0f0b9d7b6298ea04e">gridfire::utils::SUNDIALS_RET_CODE_TYPES</a></td>
+          <td class="memname">enum class <a class="el" href="namespacegridfire_1_1utils.html#a7cea622c9311bfd0f0b9d7b6298ea04e">gridfire::utils::SUNDIALS_RET_CODE_TYPES</a></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel strong">strong</span></span>  </td>
+<span class="mlabels"><span class="mlabel">strong</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -227,17 +220,24 @@ Variables</h2></td></tr>
         <tr>
           <td class="memname">void gridfire::utils::check_cvode_flag </td>
           <td>(</td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>flag</em></span>, </td>
+          <td class="paramtype">const int&#160;</td>
+          <td class="paramname"><em>flag</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::string &amp;</td>          <td class="paramname"><span class="paramname"><em>func_name</em></span>&#160;)</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>func_name</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -256,22 +256,30 @@ Variables</h2></td></tr>
         <tr>
           <td class="memname">void gridfire::utils::check_sundials_flag </td>
           <td>(</td>
-          <td class="paramtype">const int</td>          <td class="paramname"><span class="paramname"><em>flag</em></span>, </td>
+          <td class="paramtype">const int&#160;</td>
+          <td class="paramname"><em>flag</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::string &amp;</td>          <td class="paramname"><span class="paramname"><em>func_name</em></span>, </td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>func_name</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const <a class="el" href="#a7cea622c9311bfd0f0b9d7b6298ea04e">SUNDIALS_RET_CODE_TYPES</a></td>          <td class="paramname"><span class="paramname"><em>type</em></span>&#160;)</td>
+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1utils.html#a7cea622c9311bfd0f0b9d7b6298ea04e">SUNDIALS_RET_CODE_TYPES</a>&#160;</td>
+          <td class="paramname"><em>type</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -290,17 +298,24 @@ Variables</h2></td></tr>
         <tr>
           <td class="memname">std::string gridfire::utils::format_table </td>
           <td>(</td>
-          <td class="paramtype">const std::string &amp;</td>          <td class="paramname"><span class="paramname"><em>tableName</em></span>, </td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>tableName</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1utils_1_1_column_base.html">ColumnBase</a> &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>columns</em></span>&#160;)</td>
+          <td class="paramtype">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html">ColumnBase</a> &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>columns</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -319,13 +334,14 @@ Variables</h2></td></tr>
         <tr>
           <td class="memname">std::string gridfire::utils::format_table </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="classgridfire_1_1utils_1_1_table_base.html">TableBase</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>table</em></span></td><td>)</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1utils_1_1TableBase.html">TableBase</a> &amp;&#160;</td>
+          <td class="paramname"><em>table</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -341,22 +357,31 @@ Variables</h2></td></tr>
         <tr>
           <td class="memname">std::string gridfire::utils::formatNuclearTimescaleLogString </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1_dynamic_engine.html">engine::DynamicEngine</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>engine</em></span>, </td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a> &amp;&#160;</td>
+          <td class="paramname"><em>engine</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const fourdst::composition::Composition &amp;</td>          <td class="paramname"><span class="paramname"><em>composition</em></span>, </td>
+          <td class="paramtype">const fourdst::composition::Composition &amp;&#160;</td>
+          <td class="paramname"><em>composition</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T9</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">double</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>&#160;)</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -388,7 +413,7 @@ Variables</h2></td></tr>
 <li>The final string, including header and footer lines, is returned.</li>
 </ol>
 <p><b>Usage</b> </p><div class="fragment"><div class="line"><span class="comment">// Assume &#39;my_engine&#39; is a valid DynamicEngine object and Y, T9, rho are initialized.</span></div>
-<div class="line">std::string log_output = <a class="code hl_function" href="#a3d0646bcc1a6fd8df22ac0c758bfd5c4">gridfire::utils::formatNuclearTimescaleLogString</a>(my_engine, Y, T9, rho);</div>
+<div class="line">std::string log_output = <a class="code hl_function" href="namespacegridfire_1_1utils.html#a3d0646bcc1a6fd8df22ac0c758bfd5c4">gridfire::utils::formatNuclearTimescaleLogString</a>(my_engine, Y, T9, rho);</div>
 <div class="line">std::cout &lt;&lt; log_output;</div>
 <div class="line"> </div>
 <div class="line"><span class="comment">// Example Output:</span></div>
@@ -399,7 +424,7 @@ Variables</h2></td></tr>
 <div class="line"><span class="comment">// he4          inf</span></div>
 <div class="line"><span class="comment">// c12          8.765e-02</span></div>
 <div class="line"><span class="comment">// ==========================</span></div>
-<div class="ttc" id="anamespacegridfire_1_1utils_html_a3d0646bcc1a6fd8df22ac0c758bfd5c4"><div class="ttname"><a href="#a3d0646bcc1a6fd8df22ac0c758bfd5c4">gridfire::utils::formatNuclearTimescaleLogString</a></div><div class="ttdeci">std::string formatNuclearTimescaleLogString(const engine::DynamicEngine &amp;engine, const fourdst::composition::Composition &amp;composition, double T9, double rho)</div><div class="ttdoc">Formats a map of nuclear species timescales into a human-readable string.</div><div class="ttdef"><b>Definition</b> logging.cpp:11</div></div>
+<div class="ttc" id="anamespacegridfire_1_1utils_html_a3d0646bcc1a6fd8df22ac0c758bfd5c4"><div class="ttname"><a href="namespacegridfire_1_1utils.html#a3d0646bcc1a6fd8df22ac0c758bfd5c4">gridfire::utils::formatNuclearTimescaleLogString</a></div><div class="ttdeci">std::string formatNuclearTimescaleLogString(const engine::DynamicEngine &amp;engine, const fourdst::composition::Composition &amp;composition, double T9, double rho)</div><div class="ttdoc">Formats a map of nuclear species timescales into a human-readable string.</div><div class="ttdef"><b>Definition</b> logging.cpp:11</div></div>
 </div><!-- fragment --> 
 </div>
 </div>
@@ -415,17 +440,24 @@ Variables</h2></td></tr>
         <tr>
           <td class="memname">uint_fast32_t gridfire::utils::hash_atomic </td>
           <td>(</td>
-          <td class="paramtype">const uint16_t</td>          <td class="paramname"><span class="paramname"><em>a</em></span>, </td>
+          <td class="paramtype">const uint16_t&#160;</td>
+          <td class="paramname"><em>a</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const uint8_t</td>          <td class="paramname"><span class="paramname"><em>z</em></span>&#160;)</td>
+          <td class="paramtype">const uint8_t&#160;</td>
+          <td class="paramname"><em>z</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel noexcept">noexcept</span></span>  </td>
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">noexcept</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -448,17 +480,24 @@ Variables</h2></td></tr>
 <div class="memitem">
 <div class="memproto">
 <div class="memtemplate">
-template&lt;typename T&gt; </div>
+template&lt;typename T &gt; </div>
       <table class="memname">
         <tr>
           <td class="memname">std::size_t gridfire::utils::hash_combine </td>
           <td>(</td>
-          <td class="paramtype">std::size_t</td>          <td class="paramname"><span class="paramname"><em>seed</em></span>, </td>
+          <td class="paramtype">std::size_t&#160;</td>
+          <td class="paramname"><em>seed</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const T &amp;</td>          <td class="paramname"><span class="paramname"><em>v</em></span>&#160;)</td>
+          <td class="paramtype">const T &amp;&#160;</td>
+          <td class="paramname"><em>v</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -477,13 +516,14 @@ template&lt;typename T&gt; </div>
         <tr>
           <td class="memname">std::uint64_t gridfire::utils::hash_reaction </td>
           <td>(</td>
-          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &amp;</td>          <td class="paramname"><span class="paramname"><em>reaction</em></span></td><td>)</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1Reaction.html">reaction::Reaction</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel noexcept">noexcept</span></span>  </td>
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">noexcept</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -502,17 +542,24 @@ template&lt;typename T&gt; </div>
         <tr>
           <td class="memname">N_Vector gridfire::utils::init_sun_vector </td>
           <td>(</td>
-          <td class="paramtype">uint64_t</td>          <td class="paramname"><span class="paramname"><em>size</em></span>, </td>
+          <td class="paramtype">uint64_t&#160;</td>
+          <td class="paramname"><em>size</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">SUNContext</td>          <td class="paramname"><span class="paramname"><em>sun_ctx</em></span>&#160;)</td>
+          <td class="paramtype">SUNContext&#160;</td>
+          <td class="paramname"><em>sun_ctx</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
+<span class="mlabels"><span class="mlabel">inline</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -525,7 +572,7 @@ template&lt;typename T&gt; </div>
 <div class="memitem">
 <div class="memproto">
 <div class="memtemplate">
-template&lt;std::ranges::input_range Container, typename Elem = std::ranges::range_reference_t&lt;Container&gt;, typename Transform = std::identity, typename Pred = bool(*)(const std::ranges::range_value_t&lt;Container&gt;&amp;)&gt; <br />
+template&lt;std::ranges::input_range Container, typename Elem  = std::ranges::range_reference_t&lt;Container&gt;, typename Transform  = std::identity, typename Pred  = bool(*)(const std::ranges::range_value_t&lt;Container&gt;&amp;)&gt; <br />
 requires std::invocable&lt;Transform, Elem&gt; &amp;&amp; Streamable&lt;std::invoke_result_t&lt;Transform, Elem&gt;&gt; &amp;&amp; std::predicate&lt;Pred, Elem&gt;</div>
 <table class="mlabels">
   <tr>
@@ -534,27 +581,36 @@ requires std::invocable&lt;Transform, Elem&gt; &amp;&amp; Streamable&lt;std::inv
         <tr>
           <td class="memname">static std::string gridfire::utils::iterable_to_delimited_string </td>
           <td>(</td>
-          <td class="paramtype">const Container &amp;</td>          <td class="paramname"><span class="paramname"><em>container</em></span>, </td>
+          <td class="paramtype">const Container &amp;&#160;</td>
+          <td class="paramname"><em>container</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::string_view</td>          <td class="paramname"><span class="paramname"><em>delimiter</em></span><span class="paramdefsep"> = </span><span class="paramdefval">&quot;,&#160;&quot;</span>, </td>
+          <td class="paramtype">const std::string_view&#160;</td>
+          <td class="paramname"><em>delimiter</em> = <code>&quot;,&#160;&quot;</code>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">Transform</td>          <td class="paramname"><span class="paramname"><em>transform</em></span><span class="paramdefsep"> = </span><span class="paramdefval">{}</span>, </td>
+          <td class="paramtype">Transform&#160;</td>
+          <td class="paramname"><em>transform</em> = <code>{}</code>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">Pred</td>          <td class="paramname"><span class="paramname"><em>pred</em></span><span class="paramdefsep"> = </span><span class="paramdefval">[](const&#160;auto&amp;){&#160;return&#160;true;&#160;}</span>&#160;)</td>
+          <td class="paramtype">Pred&#160;</td>
+          <td class="paramname"><em>pred</em> = <code>[](const&#160;auto&amp;){&#160;return&#160;true;&#160;}</code>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel static">static</span><span class="mlabel noexcept">noexcept</span></span>  </td>
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">noexcept</span></span>  </td>
   </tr>
 </table>
 </div><div class="memdoc">
@@ -573,17 +629,24 @@ requires std::invocable&lt;Transform, Elem&gt; &amp;&amp; Streamable&lt;std::inv
         <tr>
           <td class="memname">void gridfire::utils::print_table </td>
           <td>(</td>
-          <td class="paramtype">const std::string &amp;</td>          <td class="paramname"><span class="paramname"><em>tableName</em></span>, </td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>tableName</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1utils_1_1_column_base.html">ColumnBase</a> &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>columns</em></span>&#160;)</td>
+          <td class="paramtype">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html">ColumnBase</a> &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>columns</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
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+          <td class="paramtype">const <a class="el" href="classgridfire_1_1utils_1_1TableBase.html">TableBase</a> &amp;&#160;</td>
+          <td class="paramname"><em>table</em></td><td>)</td>
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+          <td class="paramtype">const <a class="el" href="namespacegridfire_1_1utils.html#a7cea622c9311bfd0f0b9d7b6298ea04e">SUNDIALS_RET_CODE_TYPES</a>&#160;</td>
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-          <td class="paramtype">const std::string &amp;</td>          <td class="paramname"><span class="paramname"><em>filename</em></span>, </td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>filename</em>, </td>
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-          <td class="paramtype">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1utils_1_1_column_base.html">ColumnBase</a> &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>columns</em></span>&#160;)</td>
+          <td class="paramtype">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html">ColumnBase</a> &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>columns</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
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       </table>
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+          <td class="paramtype">const std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html">ColumnBase</a> &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>columns</em></td><td>)</td>
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       </table>
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         <tr>
           <td class="memname">void gridfire::utils::to_json_file </td>
           <td>(</td>
-          <td class="paramtype">const std::string &amp;</td>          <td class="paramname"><span class="paramname"><em>filename</em></span>, </td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>filename</em>, </td>
         </tr>
         <tr>
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-          <td class="paramtype">const std::vector&lt; std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1utils_1_1_column_base.html">ColumnBase</a> &gt; &gt; &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>tables</em></span>, </td>
+          <td class="paramtype">const std::vector&lt; std::vector&lt; std::unique_ptr&lt; <a class="el" href="classgridfire_1_1utils_1_1ColumnBase.html">ColumnBase</a> &gt; &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>tables</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::vector&lt; std::string &gt; &amp;</td>          <td class="paramname"><span class="paramname"><em>tableNames</em></span>&#160;)</td>
+          <td class="paramtype">const std::vector&lt; std::string &gt; &amp;&#160;</td>
+          <td class="paramname"><em>tableNames</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
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           <td class="memname">size_t gridfire::utils::visual_width </td>
           <td>(</td>
-          <td class="paramtype">const std::string &amp;</td>          <td class="paramname"><span class="paramname"><em>s</em></span></td><td>)</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>s</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span></span>  </td>
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   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel static">static</span></span>  </td>
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   </td>
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-<span class="mlabels"><span class="mlabel inline">inline</span><span class="mlabel static">static</span></span>  </td>
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">static</span></span>  </td>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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-    [ "TableBase", "classgridfire_1_1utils_1_1_table_base.html", "classgridfire_1_1utils_1_1_table_base" ],
-    [ "Streamable", "conceptgridfire_1_1utils_1_1_streamable.html", null ],
+    [ "Column", "classgridfire_1_1utils_1_1Column.html", "classgridfire_1_1utils_1_1Column" ],
+    [ "ColumnBase", "classgridfire_1_1utils_1_1ColumnBase.html", "classgridfire_1_1utils_1_1ColumnBase" ],
+    [ "Table", "classgridfire_1_1utils_1_1Table.html", "classgridfire_1_1utils_1_1Table" ],
+    [ "TableBase", "classgridfire_1_1utils_1_1TableBase.html", "classgridfire_1_1utils_1_1TableBase" ],
+    [ "Streamable", "conceptgridfire_1_1utils_1_1Streamable.html", null ],
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 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
 <link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
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+$(document).ready(function(){initNavTree('namespacegridfire_1_1utils_1_1hashing.html',''); initResizable(); });
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+<tr class="memitem:abd97bcaba4cc049e7f6974a4df5d824a" id="r_abd97bcaba4cc049e7f6974a4df5d824a"><td class="memItemLeft" align="right" valign="top">static std::uint64_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1utils_1_1hashing_1_1reaction.html#abd97bcaba4cc049e7f6974a4df5d824a">multiset_combine</a> (std::uint64_t acc, const std::uint64_t x) noexcept</td></tr>
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@@ -127,17 +120,24 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">static std::uint64_t gridfire::utils::hashing::reaction::mix_species </td>
           <td>(</td>
-          <td class="paramtype">const unsigned</td>          <td class="paramname"><span class="paramname"><em>a</em></span>, </td>
+          <td class="paramtype">const unsigned&#160;</td>
+          <td class="paramname"><em>a</em>, </td>
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-          <td class="paramtype">const unsigned</td>          <td class="paramname"><span class="paramname"><em>z</em></span>&#160;)</td>
+          <td class="paramtype">const unsigned&#160;</td>
+          <td class="paramname"><em>z</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
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-<span class="mlabels"><span class="mlabel static">static</span><span class="mlabel noexcept">noexcept</span></span>  </td>
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">noexcept</span></span>  </td>
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 </table>
 </div><div class="memdoc">
@@ -156,17 +156,24 @@ Functions</h2></td></tr>
         <tr>
           <td class="memname">static std::uint64_t gridfire::utils::hashing::reaction::multiset_combine </td>
           <td>(</td>
-          <td class="paramtype">std::uint64_t</td>          <td class="paramname"><span class="paramname"><em>acc</em></span>, </td>
+          <td class="paramtype">std::uint64_t&#160;</td>
+          <td class="paramname"><em>acc</em>, </td>
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         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">const std::uint64_t</td>          <td class="paramname"><span class="paramname"><em>x</em></span>&#160;)</td>
+          <td class="paramtype">const std::uint64_t&#160;</td>
+          <td class="paramname"><em>x</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
   </td>
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-<span class="mlabels"><span class="mlabel static">static</span><span class="mlabel noexcept">noexcept</span></span>  </td>
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         <tr>
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           <td>(</td>
-          <td class="paramtype">std::uint64_t</td>          <td class="paramname"><span class="paramname"><em>x</em></span></td><td>)</td>
+          <td class="paramtype">std::uint64_t&#160;</td>
+          <td class="paramname"><em>x</em></td><td>)</td>
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   </td>
   <td class="mlabels-right">
-<span class="mlabels"><span class="mlabel static">static</span><span class="mlabel noexcept">noexcept</span></span>  </td>
+<span class="mlabels"><span class="mlabel">static</span><span class="mlabel">noexcept</span></span>  </td>
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-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/namespacegridfire__mod.html b/docs/html/namespacegridfire__mod.html
index 0edf6c9d..96084731 100644
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-<script type="text/javascript" src="clipboard.js"></script>
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+<script type="text/javascript" src="resize.js"></script>
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@@ -29,7 +27,7 @@
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-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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@@ -38,24 +36,19 @@
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+<!-- Generated by Doxygen 1.9.8 -->
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-<script type="text/javascript">
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+$(document).ready(function(){initNavTree('namespacegridfire__mod.html',''); initResizable(); });
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@@ -129,71 +122,71 @@ Data Types</h2></td></tr>
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="enum-members" name="enum-members"></a>
 Enumerations</h2></td></tr>
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-&#160;&#160;<a class="el" href="#a244769a94919381fd624416c41519147af119a4af62898ce36809c39a9f3e2616">fdsse_non_4dstar_error</a> = -102
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-, <a class="el" href="#a244769a94919381fd624416c41519147a5488d8506bf12a5bc573052dae0993da">fdsse_unknown_symbol_error</a> = 100
+&#160;&#160;<a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147af119a4af62898ce36809c39a9f3e2616">fdsse_non_4dstar_error</a> = -102
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a2bd70933e1183dbae21d1754a301697b">fdsse_unknown_error</a> = -101
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a76184b02b2a2947ae8628e091824b0b0">fdsse_success</a> = 1
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a5488d8506bf12a5bc573052dae0993da">fdsse_unknown_symbol_error</a> = 100
 , <br />
-&#160;&#160;<a class="el" href="#a244769a94919381fd624416c41519147a9d6657b793d36330f0c9301452de425e">fdsse_species_error</a> = 101
-, <a class="el" href="#a244769a94919381fd624416c41519147ade71d6ffeb5785f4a94dfb4957972c6b">fdsse_invalid_composition_error</a> = 102
-, <a class="el" href="#a244769a94919381fd624416c41519147a6af8e4f88ac4de0a6713500ed47924a3">fdsse_composition_error</a> = 103
-, <a class="el" href="#a244769a94919381fd624416c41519147a6fb105c630638f3cf26c1d9b869c6b9b">gf_non_gridfire_error</a> = -2
+&#160;&#160;<a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a9d6657b793d36330f0c9301452de425e">fdsse_species_error</a> = 101
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147ade71d6ffeb5785f4a94dfb4957972c6b">fdsse_invalid_composition_error</a> = 102
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a6af8e4f88ac4de0a6713500ed47924a3">fdsse_composition_error</a> = 103
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a6fb105c630638f3cf26c1d9b869c6b9b">gf_non_gridfire_error</a> = -2
 , <br />
-&#160;&#160;<a class="el" href="#a244769a94919381fd624416c41519147ab4343c4611fdcdfbff141a6967f99731">gf_unknown_error</a> = -1
-, <a class="el" href="#a244769a94919381fd624416c41519147afcd18f5d78d9f7b0b6418eec99888bdc">gf_success</a> = 0
-, <a class="el" href="#a244769a94919381fd624416c41519147adb3204164d360916830dcf46d7c7639f">gf_invalid_qse_solution_error</a> = 5
-, <a class="el" href="#a244769a94919381fd624416c41519147acf5bc28581819a8b7fe22be97176a7db">gf_failed_to_partition_error</a> = 6
+&#160;&#160;<a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147ab4343c4611fdcdfbff141a6967f99731">gf_unknown_error</a> = -1
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147afcd18f5d78d9f7b0b6418eec99888bdc">gf_success</a> = 0
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147adb3204164d360916830dcf46d7c7639f">gf_invalid_qse_solution_error</a> = 5
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147acf5bc28581819a8b7fe22be97176a7db">gf_failed_to_partition_error</a> = 6
 , <br />
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-, <a class="el" href="#a244769a94919381fd624416c41519147ab2c0ad54897923d2ea73b561c238dd4b">gf_unable_to_set_network_reactions_error</a> = 8
-, <a class="el" href="#a244769a94919381fd624416c41519147a0c0949689c7b4d78cbfe62ac6643d496">gf_bad_collection_error</a> = 9
-, <a class="el" href="#a244769a94919381fd624416c41519147abe6ea56c41227a3b163bd65c14483604">gf_bad_rhs_enigne_error</a> = 10
+&#160;&#160;<a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a31df7fd44862d2e4470c395224c788f8">gf_network_resized_error</a> = 7
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147ab2c0ad54897923d2ea73b561c238dd4b">gf_unable_to_set_network_reactions_error</a> = 8
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a0c0949689c7b4d78cbfe62ac6643d496">gf_bad_collection_error</a> = 9
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147abe6ea56c41227a3b163bd65c14483604">gf_bad_rhs_enigne_error</a> = 10
 , <br />
-&#160;&#160;<a class="el" href="#a244769a94919381fd624416c41519147abd7d07be0ca380f6adc4b3598d0553ab">gf_stale_jacobian_error</a> = 11
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-, <a class="el" href="#a244769a94919381fd624416c41519147a11dcf7bd1e827e2084683d84dd7be472">gf_unknonwn_jacobian_error</a> = 13
-, <a class="el" href="#a244769a94919381fd624416c41519147a7ea5db4261227ae7a38f37cc523263e4">gf_jacobian_error</a> = 14
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+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a0b824fddd8a1a84d70ee4354d003a2a1">gf_uninitialized_jacobian_error</a> = 12
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a11dcf7bd1e827e2084683d84dd7be472">gf_unknonwn_jacobian_error</a> = 13
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a7ea5db4261227ae7a38f37cc523263e4">gf_jacobian_error</a> = 14
 , <br />
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-, <a class="el" href="#a244769a94919381fd624416c41519147a356f5d6f229750bfade0fb3e7428bafe">gf_missing_base_reaction_error</a> = 16
-, <a class="el" href="#a244769a94919381fd624416c41519147a234d2433915d095cb023087d7505d8b7">gf_missing_seed_species_error</a> = 17
-, <a class="el" href="#a244769a94919381fd624416c41519147af6b177def1d11c5f53a258d9f64a441e">gf_missing_key_reaction_error</a> = 18
+&#160;&#160;<a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147af42c69c27486dc40c6981e1692157aa1">gf_engine_error</a> = 15
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a356f5d6f229750bfade0fb3e7428bafe">gf_missing_base_reaction_error</a> = 16
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+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147af6b177def1d11c5f53a258d9f64a441e">gf_missing_key_reaction_error</a> = 18
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-, <a class="el" href="#a244769a94919381fd624416c41519147ab6dd69f49d4a5293a27ce54886d51162">gf_reactoion_error</a> = 21
-, <a class="el" href="#a244769a94919381fd624416c41519147a039f9342bd11e28e0afab4e572ce1cb8">gf_singular_jacobian_error</a> = 22
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+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a01eddf0f5d3c19271ad9b23b066c1e7a">gf_reaction_parsing_error</a> = 20
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+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a039f9342bd11e28e0afab4e572ce1cb8">gf_singular_jacobian_error</a> = 22
 , <br />
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-, <a class="el" href="#a244769a94919381fd624416c41519147a9ec6f5abf7d3bd58d9f67ee2de11f611">gf_cvode_solver_failure_error</a> = 24
-, <a class="el" href="#a244769a94919381fd624416c41519147af0951e8fed46bd965b51e05e210b0972">gf_kinsol_solver_failure_error</a> = 25
-, <a class="el" href="#a244769a94919381fd624416c41519147a725f00c38fc963c156fa376da295616a">gf_sundials_error</a> = 26
+&#160;&#160;<a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a20b3e042050a94181300e1c25a562390">gf_ill_conditioned_jacobian_error</a> = 23
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a9ec6f5abf7d3bd58d9f67ee2de11f611">gf_cvode_solver_failure_error</a> = 24
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147af0951e8fed46bd965b51e05e210b0972">gf_kinsol_solver_failure_error</a> = 25
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a725f00c38fc963c156fa376da295616a">gf_sundials_error</a> = 26
 , <br />
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-, <a class="el" href="#a244769a94919381fd624416c41519147a5478182be8d9b2102536cab3557e8b19">gf_hashing_error</a> = 28
-, <a class="el" href="#a244769a94919381fd624416c41519147a5594f6ed43fe0a6153437e9ee8cd936f">gf_utility_error</a> = 29
-, <a class="el" href="#a244769a94919381fd624416c41519147a6c28e3b538fc7c36730f1dd68c742163">gf_debug_errror</a> = 30
+&#160;&#160;<a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a0faadea5fc310fab10b0b39aaa14be56">gf_solver_error</a> = 27
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a5478182be8d9b2102536cab3557e8b19">gf_hashing_error</a> = 28
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a5594f6ed43fe0a6153437e9ee8cd936f">gf_utility_error</a> = 29
+, <a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147a6c28e3b538fc7c36730f1dd68c742163">gf_debug_errror</a> = 30
 , <br />
-&#160;&#160;<a class="el" href="#a244769a94919381fd624416c41519147ad37197a22840f8c0fe846a5c7f1d8b4e">gf_gridfire_error</a> = 31
+&#160;&#160;<a class="el" href="namespacegridfire__mod.html#a244769a94919381fd624416c41519147ad37197a22840f8c0fe846a5c7f1d8b4e">gf_gridfire_error</a> = 31
 <br />
  }</td></tr>
 <tr class="separator:a244769a94919381fd624416c41519147"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
 Functions/Subroutines</h2></td></tr>
-<tr class="memitem:aa7a417138a7967e7eacd2d79339850eb" id="r_aa7a417138a7967e7eacd2d79339850eb"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa7a417138a7967e7eacd2d79339850eb">gff_init</a> (self)</td></tr>
+<tr class="memitem:aa7a417138a7967e7eacd2d79339850eb" id="r_aa7a417138a7967e7eacd2d79339850eb"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire__mod.html#aa7a417138a7967e7eacd2d79339850eb">gff_init</a> (self)</td></tr>
 <tr class="separator:aa7a417138a7967e7eacd2d79339850eb"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a64b4012b59c5ddf025073c6a8bf467c3" id="r_a64b4012b59c5ddf025073c6a8bf467c3"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a64b4012b59c5ddf025073c6a8bf467c3">gff_free</a> (self)</td></tr>
+<tr class="memitem:a64b4012b59c5ddf025073c6a8bf467c3" id="r_a64b4012b59c5ddf025073c6a8bf467c3"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire__mod.html#a64b4012b59c5ddf025073c6a8bf467c3">gff_free</a> (self)</td></tr>
 <tr class="separator:a64b4012b59c5ddf025073c6a8bf467c3"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:afdb6d3ff7765f7bec167afab2797ebac" id="r_afdb6d3ff7765f7bec167afab2797ebac"><td class="memItemLeft" align="right" valign="top">character(len=:) function, allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#afdb6d3ff7765f7bec167afab2797ebac">get_last_error</a> (self)</td></tr>
+<tr class="memitem:afdb6d3ff7765f7bec167afab2797ebac" id="r_afdb6d3ff7765f7bec167afab2797ebac"><td class="memItemLeft" align="right" valign="top">character(len=:) function, allocatable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire__mod.html#afdb6d3ff7765f7bec167afab2797ebac">get_last_error</a> (self)</td></tr>
 <tr class="separator:afdb6d3ff7765f7bec167afab2797ebac"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:ac1514859bc529604aebece037f93cd3f" id="r_ac1514859bc529604aebece037f93cd3f"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ac1514859bc529604aebece037f93cd3f">register_species</a> (self, species_list)</td></tr>
+<tr class="memitem:ac1514859bc529604aebece037f93cd3f" id="r_ac1514859bc529604aebece037f93cd3f"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire__mod.html#ac1514859bc529604aebece037f93cd3f">register_species</a> (self, species_list)</td></tr>
 <tr class="separator:ac1514859bc529604aebece037f93cd3f"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a76639df018b589884f5ea173a8ba6561" id="r_a76639df018b589884f5ea173a8ba6561"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a76639df018b589884f5ea173a8ba6561">setup_policy</a> (self, policy_name, abundances)</td></tr>
+<tr class="memitem:a76639df018b589884f5ea173a8ba6561" id="r_a76639df018b589884f5ea173a8ba6561"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire__mod.html#a76639df018b589884f5ea173a8ba6561">setup_policy</a> (self, policy_name, abundances)</td></tr>
 <tr class="separator:a76639df018b589884f5ea173a8ba6561"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:a6ef21ebd4c28993a28ef2745cbeae022" id="r_a6ef21ebd4c28993a28ef2745cbeae022"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a6ef21ebd4c28993a28ef2745cbeae022">setup_solver</a> (self, solver_name)</td></tr>
+<tr class="memitem:a6ef21ebd4c28993a28ef2745cbeae022" id="r_a6ef21ebd4c28993a28ef2745cbeae022"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire__mod.html#a6ef21ebd4c28993a28ef2745cbeae022">setup_solver</a> (self, solver_name)</td></tr>
 <tr class="separator:a6ef21ebd4c28993a28ef2745cbeae022"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:aa4e2323274c9a492027a34979ffed973" id="r_aa4e2323274c9a492027a34979ffed973"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa4e2323274c9a492027a34979ffed973">evolve</a> (self, y_in, t, rho, dt, y_out, energy, dedt, dedrho, nu_e_loss, nu_flux, mass_lost, ierr)</td></tr>
+<tr class="memitem:aa4e2323274c9a492027a34979ffed973" id="r_aa4e2323274c9a492027a34979ffed973"><td class="memItemLeft" align="right" valign="top">subroutine&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire__mod.html#aa4e2323274c9a492027a34979ffed973">evolve</a> (self, y_in, t, rho, dt, y_out, energy, dedt, dedrho, nu_e_loss, nu_flux, mass_lost, ierr)</td></tr>
 <tr class="separator:aa4e2323274c9a492027a34979ffed973"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table>
 <h2 class="groupheader">Enumeration Type Documentation</h2>
@@ -260,67 +253,85 @@ Functions/Subroutines</h2></td></tr>
         <tr>
           <td class="memname">subroutine gridfire_mod::evolve </td>
           <td>(</td>
-          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(in)</td>          <td class="paramname"><span class="paramname"><em>self</em></span>, </td>
+          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(in)&#160;</td>
+          <td class="paramname"><em>self</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), dimension(:), intent(in)</td>          <td class="paramname"><span class="paramname"><em>y_in</em></span>, </td>
+          <td class="paramtype">real(c_double), dimension(:), intent(in)&#160;</td>
+          <td class="paramname"><em>y_in</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), value</td>          <td class="paramname"><span class="paramname"><em>t</em></span>, </td>
+          <td class="paramtype">real(c_double), value&#160;</td>
+          <td class="paramname"><em>t</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), value</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+          <td class="paramtype">real(c_double), value&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), value</td>          <td class="paramname"><span class="paramname"><em>dt</em></span>, </td>
+          <td class="paramtype">real(c_double), value&#160;</td>
+          <td class="paramname"><em>dt</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), dimension(:), intent(out)</td>          <td class="paramname"><span class="paramname"><em>y_out</em></span>, </td>
+          <td class="paramtype">real(c_double), dimension(:), intent(out)&#160;</td>
+          <td class="paramname"><em>y_out</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), intent(out)</td>          <td class="paramname"><span class="paramname"><em>energy</em></span>, </td>
+          <td class="paramtype">real(c_double), intent(out)&#160;</td>
+          <td class="paramname"><em>energy</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), intent(out)</td>          <td class="paramname"><span class="paramname"><em>dedt</em></span>, </td>
+          <td class="paramtype">real(c_double), intent(out)&#160;</td>
+          <td class="paramname"><em>dedt</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), intent(out)</td>          <td class="paramname"><span class="paramname"><em>dedrho</em></span>, </td>
+          <td class="paramtype">real(c_double), intent(out)&#160;</td>
+          <td class="paramname"><em>dedrho</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), intent(out)</td>          <td class="paramname"><span class="paramname"><em>nu_e_loss</em></span>, </td>
+          <td class="paramtype">real(c_double), intent(out)&#160;</td>
+          <td class="paramname"><em>nu_e_loss</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), intent(out)</td>          <td class="paramname"><span class="paramname"><em>nu_flux</em></span>, </td>
+          <td class="paramtype">real(c_double), intent(out)&#160;</td>
+          <td class="paramname"><em>nu_flux</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), intent(out)</td>          <td class="paramname"><span class="paramname"><em>mass_lost</em></span>, </td>
+          <td class="paramtype">real(c_double), intent(out)&#160;</td>
+          <td class="paramname"><em>mass_lost</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">integer, intent(out)</td>          <td class="paramname"><span class="paramname"><em>ierr</em></span>&#160;)</td>
+          <td class="paramtype">integer, intent(out)&#160;</td>
+          <td class="paramname"><em>ierr</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -336,7 +347,8 @@ Functions/Subroutines</h2></td></tr>
         <tr>
           <td class="memname">character(len=:) function, allocatable gridfire_mod::get_last_error </td>
           <td>(</td>
-          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(in)</td>          <td class="paramname"><span class="paramname"><em>self</em></span></td><td>)</td>
+          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(in)&#160;</td>
+          <td class="paramname"><em>self</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -353,7 +365,8 @@ Functions/Subroutines</h2></td></tr>
         <tr>
           <td class="memname">subroutine gridfire_mod::gff_free </td>
           <td>(</td>
-          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(inout)</td>          <td class="paramname"><span class="paramname"><em>self</em></span></td><td>)</td>
+          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(inout)&#160;</td>
+          <td class="paramname"><em>self</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -370,7 +383,8 @@ Functions/Subroutines</h2></td></tr>
         <tr>
           <td class="memname">subroutine gridfire_mod::gff_init </td>
           <td>(</td>
-          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(out)</td>          <td class="paramname"><span class="paramname"><em>self</em></span></td><td>)</td>
+          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(out)&#160;</td>
+          <td class="paramname"><em>self</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -387,12 +401,19 @@ Functions/Subroutines</h2></td></tr>
         <tr>
           <td class="memname">subroutine gridfire_mod::register_species </td>
           <td>(</td>
-          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(inout)</td>          <td class="paramname"><span class="paramname"><em>self</em></span>, </td>
+          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(inout)&#160;</td>
+          <td class="paramname"><em>self</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">character(len=*), dimension(:), intent(in)</td>          <td class="paramname"><span class="paramname"><em>species_list</em></span>&#160;)</td>
+          <td class="paramtype">character(len=*), dimension(:), intent(in)&#160;</td>
+          <td class="paramname"><em>species_list</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -408,17 +429,25 @@ Functions/Subroutines</h2></td></tr>
         <tr>
           <td class="memname">subroutine gridfire_mod::setup_policy </td>
           <td>(</td>
-          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(in)</td>          <td class="paramname"><span class="paramname"><em>self</em></span>, </td>
+          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(in)&#160;</td>
+          <td class="paramname"><em>self</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">character(len=*), intent(in)</td>          <td class="paramname"><span class="paramname"><em>policy_name</em></span>, </td>
+          <td class="paramtype">character(len=*), intent(in)&#160;</td>
+          <td class="paramname"><em>policy_name</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), dimension(:), intent(in)</td>          <td class="paramname"><span class="paramname"><em>abundances</em></span>&#160;)</td>
+          <td class="paramtype">real(c_double), dimension(:), intent(in)&#160;</td>
+          <td class="paramname"><em>abundances</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -434,12 +463,19 @@ Functions/Subroutines</h2></td></tr>
         <tr>
           <td class="memname">subroutine gridfire_mod::setup_solver </td>
           <td>(</td>
-          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(in)</td>          <td class="paramname"><span class="paramname"><em>self</em></span>, </td>
+          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(in)&#160;</td>
+          <td class="paramname"><em>self</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">character(len=*), intent(in)</td>          <td class="paramname"><span class="paramname"><em>solver_name</em></span>&#160;)</td>
+          <td class="paramtype">character(len=*), intent(in)&#160;</td>
+          <td class="paramname"><em>solver_name</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -452,7 +488,7 @@ Functions/Subroutines</h2></td></tr>
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
     <li class="navelem"><a class="el" href="namespacegridfire__mod.html">gridfire_mod</a></li>
-    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
   </ul>
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diff --git a/docs/html/namespacemembers.html b/docs/html/namespacemembers.html
index 98a85f14..82cb278e 100644
--- a/docs/html/namespacemembers.html
+++ b/docs/html/namespacemembers.html
@@ -3,18 +3,16 @@
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 <meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
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-<meta name="generator" content="Doxygen 1.13.2"/>
+<meta name="generator" content="Doxygen 1.9.8"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
 <title>GridFire: Namespace Members</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
 <link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
 <script type="text/javascript" src="navtreedata.js"></script>
 <script type="text/javascript" src="navtree.js"></script>
-<script type="text/javascript" src="resize.js"></script>
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 <link href="search/search.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="search/searchdata.js"></script>
 <script type="text/javascript" src="search/search.js"></script>
@@ -29,7 +27,7 @@
  <tbody>
  <tr id="projectrow">
   <td id="projectalign">
-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
    </div>
    <div id="projectbrief">General Purpose Nuclear Network</div>
   </td>
@@ -38,24 +36,19 @@
 </table>
 </div>
 <!-- end header part -->
-<!-- Generated by Doxygen 1.13.2 -->
+<!-- Generated by Doxygen 1.9.8 -->
 <script type="text/javascript">
 /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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 /* @license-end */
 </script>
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
-$(function() { codefold.init(0); });
-/* @license-end */
-</script>
 <script type="text/javascript" src="menudata.js"></script>
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 /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
 $(function() {
-  initMenu('',true,false,'search.php','Search',true);
-  $(function() { init_search(); });
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
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@@ -73,7 +66,7 @@ $(function() {
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 <script type="text/javascript">
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-$(function(){initNavTree('namespacemembers_type.html',''); initResizable(true); });
+$(document).ready(function(){initNavTree('namespacemembers_type.html',''); initResizable(); });
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 <div id="doc-content">
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+<li>ADDouble&#160;:&#160;<a class="el" href="namespacegridfire_1_1engine.html#a4562b782e8096986a9b0cc95aa8c1c02">gridfire::engine</a>, <a class="el" href="namespacegridfire_1_1screening.html#a95b9ab18f211cc0b81b05219ff92ecba">gridfire::screening</a></li>
+<li>BuildDepthType&#160;:&#160;<a class="el" href="namespacegridfire_1_1engine.html#a540b6420c7b6271717ec9b640140f6c0">gridfire::engine</a></li>
+<li>DynamicNetworkSolverStrategy&#160;:&#160;<a class="el" href="namespacegridfire_1_1solver.html#aa32e3cd33f25e8743556a54b6847cdc0">gridfire::solver</a></li>
+<li>JacobianEntry&#160;:&#160;<a class="el" href="namespacegridfire_1_1engine.html#ac7974616b5fd465c4a42e3d882cdde6e">gridfire::engine</a></li>
 <li>ParsedNetworkData&#160;:&#160;<a class="el" href="namespacegridfire_1_1io.html#abcbdcbd13cfa8c9fbe1b48e8ee2cc352">gridfire::io</a></li>
-<li>SparsityPattern&#160;:&#160;<a class="el" href="namespacegridfire_1_1engine.html#a9de1791ec719c0a9b76b835703336870">gridfire::engine</a></li>
+<li>SparsityPattern&#160;:&#160;<a class="el" href="namespacegridfire_1_1engine.html#af5175018d2d1e78a8826dd33ec6d675f">gridfire::engine</a></li>
 </ul>
 </div><!-- contents -->
 </div><!-- doc-content -->
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
 <link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
 <script type="text/javascript" src="navtreedata.js"></script>
 <script type="text/javascript" src="navtree.js"></script>
-<script type="text/javascript" src="resize.js"></script>
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 <script type="text/javascript" src="search/searchdata.js"></script>
 <script type="text/javascript" src="search/search.js"></script>
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+<!-- Generated by Doxygen 1.9.8 -->
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 $(function() {
-  initMenu('',true,false,'search.php','Search',true);
-  $(function() { init_search(); });
+  initMenu('',true,false,'search.php','Search');
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@@ -73,7 +66,7 @@ $(function() {
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 <script type="text/javascript">
 /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
-$(function(){initNavTree('namespacemembers_vars.html',''); initResizable(true); });
+$(document).ready(function(){initNavTree('namespacemembers_vars.html',''); initResizable(); });
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
 <link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
 <script type="text/javascript" src="navtreedata.js"></script>
 <script type="text/javascript" src="navtree.js"></script>
-<script type="text/javascript" src="resize.js"></script>
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 <script type="text/javascript" src="search/search.js"></script>
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 $(function() {
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-  $(function() { init_search(); });
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+<tr id="row_0_0_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_0_" class="arrow" onclick="toggleFolder('0_0_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1engine.html" target="_self">engine</a></td><td class="desc"></td></tr>
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+<tr id="row_0_0_7_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1FileDefinedEngineView.html" target="_self">FileDefinedEngineView</a></td><td class="desc"></td></tr>
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+<tr id="row_0_0_8_0_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html" target="_self">AtomicReverseRate</a></td><td class="desc"></td></tr>
+<tr id="row_0_0_8_1_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1GraphEngine_1_1constants.html" target="_self">constants</a></td><td class="desc"></td></tr>
+<tr id="row_0_0_8_2_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1GraphEngine_1_1PrecomputedReaction.html" target="_self">PrecomputedReaction</a></td><td class="desc"></td></tr>
+<tr id="row_0_0_9_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_0_9_" class="arrow" onclick="toggleFolder('0_0_9_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView.html" target="_self">MultiscalePartitioningEngineView</a></td><td class="desc">An engine view that partitions the reaction network into multiple groups based on timescales </td></tr>
+<tr id="row_0_0_9_0_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1FluxValidationResult.html" target="_self">FluxValidationResult</a></td><td class="desc"></td></tr>
+<tr id="row_0_0_9_1_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html" target="_self">QSEGroup</a></td><td class="desc">Struct representing a QSE group </td></tr>
+<tr id="row_0_0_9_2_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span id="arr_0_0_9_2_" class="arrow" onclick="toggleFolder('0_0_9_2_')">&#9658;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html" target="_self">QSESolver</a></td><td class="desc"></td></tr>
+<tr id="row_0_0_9_2_0_" class="even" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver_1_1UserData.html" target="_self">UserData</a></td><td class="desc"></td></tr>
+<tr id="row_0_0_10_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html" target="_self">NetworkJacobian</a></td><td class="desc">A wrapper class for handling the network Jacobian matrix </td></tr>
+<tr id="row_0_0_11_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1engine_1_1NetworkPrimingEngineView.html" target="_self">NetworkPrimingEngineView</a></td><td class="desc">Provides a view of a <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html" title="Abstract class for engines supporting Jacobian and stoichiometry operations.">DynamicEngine</a> filtered to reactions involving a specified priming species </td></tr>
+<tr id="row_0_0_12_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html" target="_self">PrimingReport</a></td><td class="desc">Captures the result of a network priming operation </td></tr>
+<tr id="row_0_0_13_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html" target="_self">StepDerivatives</a></td><td class="desc">Structure holding derivatives and energy generation for a network step </td></tr>
+<tr id="row_0_0_14_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">R</span></span><a class="el" href="conceptgridfire_1_1engine_1_1EngineType.html" target="_self">EngineType</a></td><td class="desc">Concept for types allowed as engine bases in EngineView </td></tr>
+<tr id="row_0_1_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_1_" class="arrow" onclick="toggleFolder('0_1_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1exceptions.html" target="_self">exceptions</a></td><td class="desc">Namespace for GridFire exception classes. All custom exceptions defined in GridFire inherit from std::exception and are organized within this namespace for clarity and modularity </td></tr>
+<tr id="row_0_1_0_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1BadCollectionError.html" target="_self">BadCollectionError</a></td><td class="desc">Exception for invalid composition collection in the engine </td></tr>
+<tr id="row_0_1_1_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1BadRHSEngineError.html" target="_self">BadRHSEngineError</a></td><td class="desc">Exception for errors in calculating the right-hand side (RHS) </td></tr>
+<tr id="row_0_1_2_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1CVODESolverFailureError.html" target="_self">CVODESolverFailureError</a></td><td class="desc">Exception for failures in the CVODE solver </td></tr>
+<tr id="row_0_1_3_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1DebugException.html" target="_self">DebugException</a></td><td class="desc">Exception class for debug-only errors </td></tr>
+<tr id="row_0_1_4_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1EngineError.html" target="_self">EngineError</a></td><td class="desc">Base class for engine-related exceptions </td></tr>
+<tr id="row_0_1_5_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1FailedToPartitionEngineError.html" target="_self">FailedToPartitionEngineError</a></td><td class="desc">Exception for failures in partitioning the engine </td></tr>
+<tr id="row_0_1_6_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1GridFireError.html" target="_self">GridFireError</a></td><td class="desc">Base class for GridFire exceptions </td></tr>
+<tr id="row_0_1_7_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1HashingError.html" target="_self">HashingError</a></td><td class="desc">Exception class for hashing-related errors in GridFire </td></tr>
+<tr id="row_0_1_8_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1IllConditionedJacobianError.html" target="_self">IllConditionedJacobianError</a></td><td class="desc">Exception thrown when the Jacobian matrix is ill-conditioned </td></tr>
+<tr id="row_0_1_9_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1InvalidQSESolutionError.html" target="_self">InvalidQSESolutionError</a></td><td class="desc">Exception for invalid QSE solution in the engine </td></tr>
+<tr id="row_0_1_10_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1JacobianError.html" target="_self">JacobianError</a></td><td class="desc">Base class for Jacobian-related exceptions </td></tr>
+<tr id="row_0_1_11_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1KINSolSolverFailureError.html" target="_self">KINSolSolverFailureError</a></td><td class="desc">Exception for failures in the KINSOL solver </td></tr>
+<tr id="row_0_1_12_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1MissingBaseReactionError.html" target="_self">MissingBaseReactionError</a></td><td class="desc">Exception thrown when a required reaction is missing from the underlying database (e.g., REACLIB) </td></tr>
+<tr id="row_0_1_13_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1MissingKeyReactionError.html" target="_self">MissingKeyReactionError</a></td><td class="desc">Exception thrown when a constructed network fails to include a key reaction required by the policy </td></tr>
+<tr id="row_0_1_14_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1MissingSeedSpeciesError.html" target="_self">MissingSeedSpeciesError</a></td><td class="desc">Exception thrown when a required seed species is not found in the initial composition </td></tr>
+<tr id="row_0_1_15_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1NetworkResizedError.html" target="_self">NetworkResizedError</a></td><td class="desc">Exception for errors during network resizing </td></tr>
+<tr id="row_0_1_16_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1PolicyError.html" target="_self">PolicyError</a></td><td class="desc">Base class for all exceptions related to network policy operations </td></tr>
+<tr id="row_0_1_17_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1ReactionError.html" target="_self">ReactionError</a></td><td class="desc">Base class for all exceptions related to reaction operations </td></tr>
+<tr id="row_0_1_18_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1ReactionParsingError.html" target="_self">ReactionParsingError</a></td><td class="desc"></td></tr>
+<tr id="row_0_1_19_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1SingularJacobianError.html" target="_self">SingularJacobianError</a></td><td class="desc">Exception thrown when the Jacobian matrix is singular </td></tr>
+<tr id="row_0_1_20_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1SolverError.html" target="_self">SolverError</a></td><td class="desc">Base class for all exceptions related to solver operations </td></tr>
+<tr id="row_0_1_21_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1StaleJacobianError.html" target="_self">StaleJacobianError</a></td><td class="desc">Exception for stale Jacobian matrix access </td></tr>
+<tr id="row_0_1_22_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1SUNDIALSError.html" target="_self">SUNDIALSError</a></td><td class="desc">Base class for exceptions related to SUNDIALS solver operations </td></tr>
+<tr id="row_0_1_23_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1UnableToSetNetworkReactionsError.html" target="_self">UnableToSetNetworkReactionsError</a></td><td class="desc">Exception for failures in setting network reactions </td></tr>
+<tr id="row_0_1_24_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1UninitializedJacobianError.html" target="_self">UninitializedJacobianError</a></td><td class="desc">Exception for uninitialized Jacobian matrix access </td></tr>
+<tr id="row_0_1_25_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1UnknownJacobianError.html" target="_self">UnknownJacobianError</a></td><td class="desc">Exception for unknown Jacobian matrix access </td></tr>
+<tr id="row_0_1_26_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1exceptions_1_1UtilityError.html" target="_self">UtilityError</a></td><td class="desc">Base class for utility-related errors in GridFire </td></tr>
+<tr id="row_0_2_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_2_" class="arrow" onclick="toggleFolder('0_2_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1io.html" target="_self">io</a></td><td class="desc"></td></tr>
+<tr id="row_0_2_0_" class="even" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_2_0_" class="arrow" onclick="toggleFolder('0_2_0_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1io_1_1gen.html" target="_self">gen</a></td><td class="desc">Namespace for generative input/output functionalities </td></tr>
+<tr id="row_0_2_0_0_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1io_1_1gen_1_1PyFunctionDef.html" target="_self">PyFunctionDef</a></td><td class="desc">Structure representing a Python function definition </td></tr>
+<tr id="row_0_2_1_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1io_1_1MESANetworkFileParser.html" target="_self">MESANetworkFileParser</a></td><td class="desc">A parser for MESA-format network files </td></tr>
+<tr id="row_0_2_2_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1io_1_1NetworkFileParser.html" target="_self">NetworkFileParser</a></td><td class="desc">An abstract base class for network file parsers </td></tr>
+<tr id="row_0_2_3_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1io_1_1SimpleReactionListFileParser.html" target="_self">SimpleReactionListFileParser</a></td><td class="desc">A parser for simple text files containing a list of reactions </td></tr>
+<tr id="row_0_3_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_3_" class="arrow" onclick="toggleFolder('0_3_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1partition.html" target="_self">partition</a></td><td class="desc"></td></tr>
+<tr id="row_0_3_0_" class="odd" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_3_0_" class="arrow" onclick="toggleFolder('0_3_0_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1partition_1_1record.html" target="_self">record</a></td><td class="desc"></td></tr>
+<tr id="row_0_3_0_0_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html" target="_self">RauscherThielemannPartitionDataRecord</a></td><td class="desc">Packed binary record of Rauscher-Thielemann partition function data for an isotope </td></tr>
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+<tr id="row_0_3_2_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1partition_1_1GroundStatePartitionFunction.html" target="_self">GroundStatePartitionFunction</a></td><td class="desc">Partition function implementation for nuclear ground states </td></tr>
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+<tr id="row_0_3_4_0_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1IdentifiedIsotope.html" target="_self">IdentifiedIsotope</a></td><td class="desc"></td></tr>
+<tr id="row_0_3_4_1_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1InterpolationPoints.html" target="_self">InterpolationPoints</a></td><td class="desc"></td></tr>
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+<tr id="row_0_4_7_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1policy_1_1HotCNOIIChainPolicy.html" target="_self">HotCNOIIChainPolicy</a></td><td class="desc">Hot CNO II Chain Policy </td></tr>
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+<tr id="row_0_4_10_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1policy_1_1MainSequenceReactionChainPolicy.html" target="_self">MainSequenceReactionChainPolicy</a></td><td class="desc">Main Sequence Reaction Chain Policy </td></tr>
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+<tr id="row_0_4_13_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonChainPolicy.html" target="_self">ProtonProtonChainPolicy</a></td><td class="desc">Proton-Proton Chain Policy </td></tr>
+<tr id="row_0_4_14_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIChainPolicy.html" target="_self">ProtonProtonIChainPolicy</a></td><td class="desc">Proton-Proton I Chain Policy </td></tr>
+<tr id="row_0_4_15_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIChainPolicy.html" target="_self">ProtonProtonIIChainPolicy</a></td><td class="desc">Proton-Proton II Chain Policy </td></tr>
+<tr id="row_0_4_16_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1policy_1_1ProtonProtonIIIChainPolicy.html" target="_self">ProtonProtonIIIChainPolicy</a></td><td class="desc">Proton-Proton III Chain Policy </td></tr>
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+<tr id="row_0_4_18_0_" class="even" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1policy_1_1TemperatureDependentChainPolicy_1_1ActiveTempRange.html" target="_self">ActiveTempRange</a></td><td class="desc">Struct to hold the active temperature range for the reaction chain </td></tr>
+<tr id="row_0_4_19_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1policy_1_1TripleAlphaChainPolicy.html" target="_self">TripleAlphaChainPolicy</a></td><td class="desc">Triple-Alpha Chain Policy </td></tr>
+<tr id="row_0_5_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_5_" class="arrow" onclick="toggleFolder('0_5_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1rates.html" target="_self">rates</a></td><td class="desc"></td></tr>
+<tr id="row_0_5_0_" class="odd" style="display:none;"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span id="arr_0_5_0_" class="arrow" onclick="toggleFolder('0_5_0_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1rates_1_1weak.html" target="_self">weak</a></td><td class="desc"></td></tr>
+<tr id="row_0_5_0_0_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1BoundsErrorInfo.html" target="_self">BoundsErrorInfo</a></td><td class="desc">Detailed bounds information for a BOUNDS_ERROR </td></tr>
+<tr id="row_0_5_0_1_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1InterpolationError.html" target="_self">InterpolationError</a></td><td class="desc">Interpolation error with optional per-axis bounds details </td></tr>
+<tr id="row_0_5_0_2_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html" target="_self">IsotopeGrid</a></td><td class="desc">Regular 2D grid and payloads for a single isotope (A,Z) </td></tr>
+<tr id="row_0_5_0_3_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html" target="_self">RateDataRow</a></td><td class="desc">One row of the unified weak-rate data table for a specific isotope and state </td></tr>
+<tr id="row_0_5_0_4_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives.html" target="_self">WeakRateDerivatives</a></td><td class="desc">Partial derivatives of the log10() fields w.r.t. (T9, log10(rho*Ye)) </td></tr>
+<tr id="row_0_5_0_5_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakRateInterpolator.html" target="_self">WeakRateInterpolator</a></td><td class="desc">3D table interpolator for tabulated weak reaction data by isotope </td></tr>
+<tr id="row_0_5_0_6_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html" target="_self">WeakRatePayload</a></td><td class="desc">Interpolated weak-rate payload at a single state </td></tr>
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+<tr id="row_0_5_0_7_0_" class="odd" style="display:none;"><td class="entry"><span style="width:80px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html" target="_self">AtomicWeakRate</a></td><td class="desc">CppAD atomic that wraps weak-rate interpolation for AD evaluation </td></tr>
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+<tr id="row_0_5_0_8_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html" target="_self">WeakReactionEntry</a></td><td class="desc">A single weak-reaction data point (type, state, and log values) </td></tr>
+<tr id="row_0_5_0_9_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1rates_1_1weak_1_1WeakReactionMap.html" target="_self">WeakReactionMap</a></td><td class="desc">Index of available weak reactions keyed by species </td></tr>
+<tr id="row_0_6_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_6_" class="arrow" onclick="toggleFolder('0_6_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1reaclib.html" target="_self">reaclib</a></td><td class="desc"></td></tr>
+<tr id="row_0_6_0_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1reaclib_1_1ReactionRecord.html" target="_self">ReactionRecord</a></td><td class="desc"></td></tr>
+<tr id="row_0_7_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_7_" class="arrow" onclick="toggleFolder('0_7_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1reaction.html" target="_self">reaction</a></td><td class="desc"></td></tr>
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+<tr id="row_0_7_1_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html" target="_self">RateCoefficientSet</a></td><td class="desc">Holds the seven coefficients for the REACLIB rate equation </td></tr>
+<tr id="row_0_7_2_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1ReaclibReaction.html" target="_self">ReaclibReaction</a></td><td class="desc"></td></tr>
+<tr id="row_0_7_3_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1Reaction.html" target="_self">Reaction</a></td><td class="desc">Represents a single nuclear reaction from a specific data source </td></tr>
+<tr id="row_0_7_4_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html" target="_self">ReactionSet</a></td><td class="desc"></td></tr>
+<tr id="row_0_7_5_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1WeakReaclibReaction.html" target="_self">WeakReaclibReaction</a></td><td class="desc"></td></tr>
+<tr id="row_0_8_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_8_" class="arrow" onclick="toggleFolder('0_8_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1screening.html" target="_self">screening</a></td><td class="desc"></td></tr>
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+<tr id="row_0_8_1_" class="even" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1screening_1_1IntermediateScreeningModel.html" target="_self">IntermediateScreeningModel</a></td><td class="desc"></td></tr>
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+<tr id="row_0_9_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span id="arr_0_9_" class="arrow" onclick="toggleFolder('0_9_')">&#9658;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacegridfire_1_1solver.html" target="_self">solver</a></td><td class="desc"></td></tr>
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+<tr id="row_0_9_0_0_" class="odd" style="display:none;"><td class="entry"><span style="width:64px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODERHSOutputData.html" target="_self">CVODERHSOutputData</a></td><td class="desc"></td></tr>
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+<tr id="row_0_9_1_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1solver_1_1NetworkSolverStrategy.html" target="_self">NetworkSolverStrategy</a></td><td class="desc">Abstract base class for network solver strategies </td></tr>
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 </div>
 </body>
diff --git a/docs/html/namespacestd.js b/docs/html/namespacestd.js
index a846f807..1adafb1e 100644
--- a/docs/html/namespacestd.js
+++ b/docs/html/namespacestd.js
@@ -1,7 +1,7 @@
 var namespacestd =
 [
-    [ "formatter< gridfire::engine::NetworkJacobian >", "structstd_1_1formatter_3_01gridfire_1_1engine_1_1_network_jacobian_01_4.html", "structstd_1_1formatter_3_01gridfire_1_1engine_1_1_network_jacobian_01_4" ],
-    [ "hash< gridfire::rates::weak::TableAxes >", "structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4.html", "structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4" ],
-    [ "hash< gridfire::reaction::Reaction >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4" ],
-    [ "hash< gridfire::reaction::ReactionSet >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4" ]
+    [ "formatter< gridfire::engine::NetworkJacobian >", "structstd_1_1formatter_3_01gridfire_1_1engine_1_1NetworkJacobian_01_4.html", "structstd_1_1formatter_3_01gridfire_1_1engine_1_1NetworkJacobian_01_4" ],
+    [ "hash< gridfire::rates::weak::TableAxes >", "structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1TableAxes_01_4.html", "structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1TableAxes_01_4" ],
+    [ "hash< gridfire::reaction::Reaction >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1Reaction_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1Reaction_01_4" ],
+    [ "hash< gridfire::reaction::ReactionSet >", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1ReactionSet_01_4.html", "structstd_1_1hash_3_01gridfire_1_1reaction_1_1ReactionSet_01_4" ]
 ];
\ No newline at end of file
diff --git a/docs/html/navtree.js b/docs/html/navtree.js
index 2d4fa84a..93dd3d46 100644
--- a/docs/html/navtree.js
+++ b/docs/html/navtree.js
@@ -22,462 +22,538 @@
 
  @licend  The above is the entire license notice for the JavaScript code in this file
  */
+var navTreeSubIndices = new Array();
+var arrowDown = '&#9660;';
+var arrowRight = '&#9658;';
 
-function initNavTree(toroot,relpath) {
-  let navTreeSubIndices = [];
-  const ARROW_DOWN = '&#9660;';
-  const ARROW_RIGHT = '&#9658;';
-  const NAVPATH_COOKIE_NAME = ''+'navpath';
+function getData(varName)
+{
+  var i = varName.lastIndexOf('/');
+  var n = i>=0 ? varName.substring(i+1) : varName;
+  return eval(n.replace(/\-/g,'_'));
+}
 
-  const getData = function(varName) {
-    const i = varName.lastIndexOf('/');
-    const n = i>=0 ? varName.substring(i+1) : varName;
-    return eval(n.replace(/-/g,'_'));
+function stripPath(uri)
+{
+  return uri.substring(uri.lastIndexOf('/')+1);
+}
+
+function stripPath2(uri)
+{
+  var i = uri.lastIndexOf('/');
+  var s = uri.substring(i+1);
+  var m = uri.substring(0,i+1).match(/\/d\w\/d\w\w\/$/);
+  return m ? uri.substring(i-6) : s;
+}
+
+function hashValue()
+{
+  return $(location).attr('hash').substring(1).replace(/[^\w\-]/g,'');
+}
+
+function hashUrl()
+{
+  return '#'+hashValue();
+}
+
+function pathName()
+{
+  return $(location).attr('pathname').replace(/[^-A-Za-z0-9+&@#/%?=~_|!:,.;\(\)]/g, '');
+}
+
+function localStorageSupported()
+{
+  try {
+    return 'localStorage' in window && window['localStorage'] !== null && window.localStorage.getItem;
   }
-
-  const stripPath = function(uri) {
-    return uri.substring(uri.lastIndexOf('/')+1);
+  catch(e) {
+    return false;
   }
+}
 
-  const stripPath2 = function(uri) {
-    const i = uri.lastIndexOf('/');
-    const s = uri.substring(i+1);
-    const m = uri.substring(0,i+1).match(/\/d\w\/d\w\w\/$/);
-    return m ? uri.substring(i-6) : s;
+function storeLink(link)
+{
+  if (!$("#nav-sync").hasClass('sync') && localStorageSupported()) {
+      window.localStorage.setItem('navpath',link);
   }
+}
 
-  const hashValue = function() {
-    return $(location).attr('hash').substring(1).replace(/[^\w-]/g,'');
+function deleteLink()
+{
+  if (localStorageSupported()) {
+    window.localStorage.setItem('navpath','');
   }
+}
 
-  const hashUrl = function() {
-    return '#'+hashValue();
+function cachedLink()
+{
+  if (localStorageSupported()) {
+    return window.localStorage.getItem('navpath');
+  } else {
+    return '';
   }
+}
 
-  const pathName = function() {
-    return $(location).attr('pathname').replace(/[^-A-Za-z0-9+&@#/%?=~_|!:,.;()]/g, '');
-  }
+function getScript(scriptName,func)
+{
+  var head = document.getElementsByTagName("head")[0];
+  var script = document.createElement('script');
+  script.id = scriptName;
+  script.type = 'text/javascript';
+  script.onload = func;
+  script.src = scriptName+'.js';
+  head.appendChild(script);
+}
 
-  const storeLink = function(link) {
-    if (!$("#nav-sync").hasClass('sync')) {
-      Cookie.writeSetting(NAVPATH_COOKIE_NAME,link,0);
-    }
-  }
-
-  const deleteLink = function() {
-    Cookie.eraseSetting(NAVPATH_COOKIE_NAME);
-  }
-
-  const cachedLink = function() {
-    return Cookie.readSetting(NAVPATH_COOKIE_NAME,'');
-  }
-
-  const getScript = function(scriptName,func) {
-    const head = document.getElementsByTagName("head")[0];
-    const script = document.createElement('script');
-    script.id = scriptName;
-    script.type = 'text/javascript';
-    script.onload = func;
-    script.src = scriptName+'.js';
-    head.appendChild(script);
-  }
-
-  const createIndent = function(o,domNode,node) {
-    let level=-1;
-    let n = node;
-    while (n.parentNode) { level++; n=n.parentNode; }
-    if (node.childrenData) {
-      const imgNode = document.createElement("span");
-      imgNode.className = 'arrow';
-      imgNode.style.paddingLeft=(16*level).toString()+'px';
-      imgNode.innerHTML=ARROW_RIGHT;
-      node.plus_img = imgNode;
-      node.expandToggle = document.createElement("a");
-      node.expandToggle.href = "javascript:void(0)";
-      node.expandToggle.onclick = function() {
-        if (node.expanded) {
-          $(node.getChildrenUL()).slideUp("fast");
-          node.plus_img.innerHTML=ARROW_RIGHT;
-          node.expanded = false;
-        } else {
-          expandNode(o, node, false, true);
-        }
+function createIndent(o,domNode,node,level)
+{
+  var level=-1;
+  var n = node;
+  while (n.parentNode) { level++; n=n.parentNode; }
+  if (node.childrenData) {
+    var imgNode = document.createElement("span");
+    imgNode.className = 'arrow';
+    imgNode.style.paddingLeft=(16*level).toString()+'px';
+    imgNode.innerHTML=arrowRight;
+    node.plus_img = imgNode;
+    node.expandToggle = document.createElement("a");
+    node.expandToggle.href = "javascript:void(0)";
+    node.expandToggle.onclick = function() {
+      if (node.expanded) {
+        $(node.getChildrenUL()).slideUp("fast");
+        node.plus_img.innerHTML=arrowRight;
+        node.expanded = false;
+      } else {
+        expandNode(o, node, false, true);
       }
-      node.expandToggle.appendChild(imgNode);
-      domNode.appendChild(node.expandToggle);
+    }
+    node.expandToggle.appendChild(imgNode);
+    domNode.appendChild(node.expandToggle);
+  } else {
+    var span = document.createElement("span");
+    span.className = 'arrow';
+    span.style.width   = 16*(level+1)+'px';
+    span.innerHTML = '&#160;';
+    domNode.appendChild(span);
+  }
+}
+
+var animationInProgress = false;
+
+function gotoAnchor(anchor,aname,updateLocation)
+{
+  var pos, docContent = $('#doc-content');
+  var ancParent = $(anchor.parent());
+  if (ancParent.hasClass('memItemLeft') ||
+      ancParent.hasClass('memtitle') ||
+      ancParent.hasClass('fieldname') ||
+      ancParent.hasClass('fieldtype') ||
+      ancParent.is(':header'))
+  {
+    pos = ancParent.position().top;
+  } else if (anchor.position()) {
+    pos = anchor.position().top;
+  }
+  if (pos) {
+    var dist = Math.abs(Math.min(
+               pos-docContent.offset().top,
+               docContent[0].scrollHeight-
+               docContent.height()-docContent.scrollTop()));
+    animationInProgress=true;
+    docContent.animate({
+      scrollTop: pos + docContent.scrollTop() - docContent.offset().top
+    },Math.max(50,Math.min(500,dist)),function(){
+      if (updateLocation) window.location.href=aname;
+      animationInProgress=false;
+    });
+  }
+}
+
+function newNode(o, po, text, link, childrenData, lastNode)
+{
+  var node = new Object();
+  node.children = Array();
+  node.childrenData = childrenData;
+  node.depth = po.depth + 1;
+  node.relpath = po.relpath;
+  node.isLast = lastNode;
+
+  node.li = document.createElement("li");
+  po.getChildrenUL().appendChild(node.li);
+  node.parentNode = po;
+
+  node.itemDiv = document.createElement("div");
+  node.itemDiv.className = "item";
+
+  node.labelSpan = document.createElement("span");
+  node.labelSpan.className = "label";
+
+  createIndent(o,node.itemDiv,node,0);
+  node.itemDiv.appendChild(node.labelSpan);
+  node.li.appendChild(node.itemDiv);
+
+  var a = document.createElement("a");
+  node.labelSpan.appendChild(a);
+  node.label = document.createTextNode(text);
+  node.expanded = false;
+  a.appendChild(node.label);
+  if (link) {
+    var url;
+    if (link.substring(0,1)=='^') {
+      url = link.substring(1);
+      link = url;
     } else {
-      let span = document.createElement("span");
-      span.className = 'arrow';
-      span.style.width   = 16*(level+1)+'px';
-      span.innerHTML = '&#160;';
-      domNode.appendChild(span);
+      url = node.relpath+link;
     }
-  }
-
-  let animationInProgress = false;
-
-  const gotoAnchor = function(anchor,aname) {
-    let pos, docContent = $('#doc-content');
-    let ancParent = $(anchor.parent());
-    if (ancParent.hasClass('memItemLeft') || ancParent.hasClass('memtitle')  ||
-        ancParent.hasClass('fieldname')   || ancParent.hasClass('fieldtype') ||
-        ancParent.is(':header')) {
-      pos = ancParent.offset().top;
-    } else if (anchor.position()) {
-      pos = anchor.offset().top;
-    }
-    if (pos) {
-      const dcOffset    = docContent.offset().top;
-      const dcHeight    = docContent.height();
-      const dcScrHeight = docContent[0].scrollHeight
-      const dcScrTop    = docContent.scrollTop();
-      let dist = Math.abs(Math.min(pos-dcOffset,dcScrHeight-dcHeight-dcScrTop));
-      animationInProgress = true;
-      docContent.animate({
-        scrollTop: pos + dcScrTop - dcOffset
-      },Math.max(50,Math.min(500,dist)),function() {
-        animationInProgress=false;
-        if (anchor.parent().attr('class')=='memItemLeft') {
-          let rows = $('.memberdecls tr[class$="'+hashValue()+'"]');
-          glowEffect(rows.children(),300); // member without details
-        } else if (anchor.parent().attr('class')=='fieldname') {
-          glowEffect(anchor.parent().parent(),1000); // enum value
-        } else if (anchor.parent().attr('class')=='fieldtype') {
-          glowEffect(anchor.parent().parent(),1000); // struct field
-        } else if (anchor.parent().is(":header")) {
-          glowEffect(anchor.parent(),1000); // section header
-        } else {
-          glowEffect(anchor.next(),1000); // normal member
+    a.className = stripPath(link.replace('#',':'));
+    if (link.indexOf('#')!=-1) {
+      var aname = '#'+link.split('#')[1];
+      var srcPage = stripPath(pathName());
+      var targetPage = stripPath(link.split('#')[0]);
+      a.href = srcPage!=targetPage ? url : "javascript:void(0)";
+      a.onclick = function(){
+        storeLink(link);
+        if (!$(a).parent().parent().hasClass('selected'))
+        {
+          $('.item').removeClass('selected');
+          $('.item').removeAttr('id');
+          $(a).parent().parent().addClass('selected');
+          $(a).parent().parent().attr('id','selected');
         }
-      });
+        var anchor = $(aname);
+        gotoAnchor(anchor,aname,true);
+      };
+    } else {
+      a.href = url;
+      a.onclick = function() { storeLink(link); }
     }
-  }
-
-  const newNode = function(o, po, text, link, childrenData, lastNode) {
-    const node = {
-      children     : [],
-      childrenData : childrenData,
-      depth        : po.depth + 1,
-      relpath      : po.relpath,
-      isLast       : lastNode,
-      li           : document.createElement("li"),
-      parentNode   : po,
-      itemDiv      : document.createElement("div"),
-      labelSpan    : document.createElement("span"),
-      label        : document.createTextNode(text),
-      expanded     : false,
-      childrenUL   : null,
-      getChildrenUL : function() {
-        if (!this.childrenUL) {
-          this.childrenUL = document.createElement("ul");
-          this.childrenUL.className = "children_ul";
-          this.childrenUL.style.display = "none";
-          this.li.appendChild(node.childrenUL);
-        }
-        return node.childrenUL;
-      },
-    };
-
-    node.itemDiv.className = "item";
-    node.labelSpan.className = "label";
-    createIndent(o,node.itemDiv,node);
-    node.itemDiv.appendChild(node.labelSpan);
-    node.li.appendChild(node.itemDiv);
-
-    const a = document.createElement("a");
-    node.labelSpan.appendChild(a);
-    po.getChildrenUL().appendChild(node.li);
-    a.appendChild(node.label);
-    if (link) {
-      let url;
-      if (link.substring(0,1)=='^') {
-        url = link.substring(1);
-        link = url;
-      } else {
-        url = node.relpath+link;
-      }
-      a.className = stripPath(link.replace('#',':'));
-      if (link.indexOf('#')!=-1) {
-        const aname = '#'+link.split('#')[1];
-        const srcPage = stripPath(pathName());
-        const targetPage = stripPath(link.split('#')[0]);
-        a.href = srcPage!=targetPage ? url : aname;
-        a.onclick = function() {
-          storeLink(link);
-          aPPar = $(a).parent().parent();
-          if (!aPPar.hasClass('selected')) {
-            $('.item').removeClass('selected');
-            $('.item').removeAttr('id');
-            aPPar.addClass('selected');
-            aPPar.attr('id','selected');
-          }
-          const anchor = $(aname);
-          gotoAnchor(anchor,aname);
-        };
-      } else {
-        a.href = url;
-        a.onclick = () => storeLink(link);
-      }
-    } else if (childrenData != null) {
+  } else {
+    if (childrenData != null)
+    {
       a.className = "nolink";
       a.href = "javascript:void(0)";
       a.onclick = node.expandToggle.onclick;
     }
-    return node;
   }
 
-  const showRoot = function() {
-    const headerHeight = $("#top").height();
-    const footerHeight = $("#nav-path").height();
-    const windowHeight = $(window).height() - headerHeight - footerHeight;
-    (function() { // retry until we can scroll to the selected item
-      try {
-        const navtree=$('#nav-tree');
-        navtree.scrollTo('#selected',100,{offset:-windowHeight/2});
-      } catch (err) {
-        setTimeout(arguments.callee, 0);
+  node.childrenUL = null;
+  node.getChildrenUL = function() {
+    if (!node.childrenUL) {
+      node.childrenUL = document.createElement("ul");
+      node.childrenUL.className = "children_ul";
+      node.childrenUL.style.display = "none";
+      node.li.appendChild(node.childrenUL);
+    }
+    return node.childrenUL;
+  };
+
+  return node;
+}
+
+function showRoot()
+{
+  var headerHeight = $("#top").height();
+  var footerHeight = $("#nav-path").height();
+  var windowHeight = $(window).height() - headerHeight - footerHeight;
+  (function (){ // retry until we can scroll to the selected item
+    try {
+      var navtree=$('#nav-tree');
+      navtree.scrollTo('#selected',100,{offset:-windowHeight/2});
+    } catch (err) {
+      setTimeout(arguments.callee, 0);
+    }
+  })();
+}
+
+function expandNode(o, node, imm, setFocus)
+{
+  if (node.childrenData && !node.expanded) {
+    if (typeof(node.childrenData)==='string') {
+      var varName    = node.childrenData;
+      getScript(node.relpath+varName,function(){
+        node.childrenData = getData(varName);
+        expandNode(o, node, imm, setFocus);
+      });
+    } else {
+      if (!node.childrenVisited) {
+        getNode(o, node);
       }
-    })();
-  }
-
-  const expandNode = function(o, node, imm, setFocus) {
-    if (node.childrenData && !node.expanded) {
-      if (typeof(node.childrenData)==='string') {
-        const varName = node.childrenData;
-        getScript(node.relpath+varName,function() {
-          node.childrenData = getData(varName);
-          expandNode(o, node, imm, setFocus);
-        });
-      } else {
-        if (!node.childrenVisited) {
-          getNode(o, node);
-        }
-        $(node.getChildrenUL()).slideDown("fast");
-        node.plus_img.innerHTML = ARROW_DOWN;
-        node.expanded = true;
-        if (setFocus) {
-          $(node.expandToggle).focus();
-        }
+      $(node.getChildrenUL()).slideDown("fast");
+      node.plus_img.innerHTML = arrowDown;
+      node.expanded = true;
+      if (setFocus) {
+        $(node.expandToggle).focus();
       }
     }
   }
+}
 
-  const glowEffect = function(n,duration) {
-    n.addClass('glow').delay(duration).queue(function(next) {
-      $(this).removeClass('glow');next();
-    });
+function glowEffect(n,duration)
+{
+  n.addClass('glow').delay(duration).queue(function(next){
+    $(this).removeClass('glow');next();
+  });
+}
+
+function highlightAnchor()
+{
+  var aname = hashUrl();
+  var anchor = $(aname);
+  if (anchor.parent().attr('class')=='memItemLeft'){
+    var rows = $('.memberdecls tr[class$="'+hashValue()+'"]');
+    glowEffect(rows.children(),300); // member without details
+  } else if (anchor.parent().attr('class')=='fieldname'){
+    glowEffect(anchor.parent().parent(),1000); // enum value
+  } else if (anchor.parent().attr('class')=='fieldtype'){
+    glowEffect(anchor.parent().parent(),1000); // struct field
+  } else if (anchor.parent().is(":header")) {
+    glowEffect(anchor.parent(),1000); // section header
+  } else {
+    glowEffect(anchor.next(),1000); // normal member
   }
+}
 
-  const highlightAnchor = function() {
-    const aname = hashUrl();
-    const anchor = $(aname);
-    gotoAnchor(anchor,aname);
+function selectAndHighlight(hash,n)
+{
+  var a;
+  if (hash) {
+    var link=stripPath(pathName())+':'+hash.substring(1);
+    a=$('.item a[class$="'+link+'"]');
   }
-
-  const selectAndHighlight = function(hash,n) {
-    let a;
-    if (hash) {
-      const link=stripPath(pathName())+':'+hash.substring(1);
-      a=$('.item a[class$="'+link+'"]');
-    }
-    if (a && a.length) {
-      a.parent().parent().addClass('selected');
-      a.parent().parent().attr('id','selected');
-      highlightAnchor();
-    } else if (n) {
-      $(n.itemDiv).addClass('selected');
-      $(n.itemDiv).attr('id','selected');
-    }
-    let topOffset=5;
-    if ($('#nav-tree-contents .item:first').hasClass('selected')) {
-      topOffset+=25;
-    }
-    $('#nav-sync').css('top',topOffset+'px');
-    showRoot();
+  if (a && a.length) {
+    a.parent().parent().addClass('selected');
+    a.parent().parent().attr('id','selected');
+    highlightAnchor();
+  } else if (n) {
+    $(n.itemDiv).addClass('selected');
+    $(n.itemDiv).attr('id','selected');
   }
+  var topOffset=5;
+  if (typeof page_layout!=='undefined' && page_layout==1) {
+    topOffset+=$('#top').outerHeight();
+  }
+  if ($('#nav-tree-contents .item:first').hasClass('selected')) {
+    topOffset+=25;
+  }
+  $('#nav-sync').css('top',topOffset+'px');
+  showRoot();
+}
 
-  const showNode = function(o, node, index, hash) {
-    if (node && node.childrenData) {
-      if (typeof(node.childrenData)==='string') {
-        const varName = node.childrenData;
-        getScript(node.relpath+varName,function() {
-          node.childrenData = getData(varName);
-          showNode(o,node,index,hash);
-        });
+function showNode(o, node, index, hash)
+{
+  if (node && node.childrenData) {
+    if (typeof(node.childrenData)==='string') {
+      var varName    = node.childrenData;
+      getScript(node.relpath+varName,function(){
+        node.childrenData = getData(varName);
+        showNode(o,node,index,hash);
+      });
+    } else {
+      if (!node.childrenVisited) {
+        getNode(o, node);
+      }
+      $(node.getChildrenUL()).css({'display':'block'});
+      node.plus_img.innerHTML = arrowDown;
+      node.expanded = true;
+      var n = node.children[o.breadcrumbs[index]];
+      if (index+1<o.breadcrumbs.length) {
+        showNode(o,n,index+1,hash);
       } else {
-        if (!node.childrenVisited) {
-          getNode(o, node);
-        }
-        $(node.getChildrenUL()).css({'display':'block'});
-        node.plus_img.innerHTML = ARROW_DOWN;
-        node.expanded = true;
-        const n = node.children[o.breadcrumbs[index]];
-        if (index+1<o.breadcrumbs.length) {
-          showNode(o,n,index+1,hash);
-        } else if (typeof(n.childrenData)==='string') {
-          const varName = n.childrenData;
-          getScript(n.relpath+varName,function() {
+        if (typeof(n.childrenData)==='string') {
+          var varName = n.childrenData;
+          getScript(n.relpath+varName,function(){
             n.childrenData = getData(varName);
             node.expanded=false;
             showNode(o,node,index,hash); // retry with child node expanded
           });
         } else {
-          const rootBase = stripPath(o.toroot.replace(/\..+$/, ''));
+          var rootBase = stripPath(o.toroot.replace(/\..+$/, ''));
           if (rootBase=="index" || rootBase=="pages" || rootBase=="search") {
             expandNode(o, n, true, false);
           }
           selectAndHighlight(hash,n);
         }
       }
-    } else {
-      selectAndHighlight(hash);
     }
-  }
-
-  const removeToInsertLater = function(element) {
-    const parentNode = element.parentNode;
-    const nextSibling = element.nextSibling;
-    parentNode.removeChild(element);
-    return function() {
-      if (nextSibling) {
-        parentNode.insertBefore(element, nextSibling);
-      } else {
-        parentNode.appendChild(element);
-      }
-    };
-  }
-
-  const getNode = function(o, po) {
-    const insertFunction = removeToInsertLater(po.li);
-    po.childrenVisited = true;
-    const l = po.childrenData.length-1;
-    for (let i in po.childrenData) {
-      const nodeData = po.childrenData[i];
-      po.children[i] = newNode(o, po, nodeData[0], nodeData[1], nodeData[2], i==l);
-    }
-    insertFunction();
-  }
-
-  const gotoNode = function(o,subIndex,root,hash,relpath) {
-    const nti = navTreeSubIndices[subIndex][root+hash];
-    o.breadcrumbs = $.extend(true, [], nti ? nti : navTreeSubIndices[subIndex][root]);
-    if (!o.breadcrumbs && root!=NAVTREE[0][1]) { // fallback: show index
-      navTo(o,NAVTREE[0][1],"",relpath);
-      $('.item').removeClass('selected');
-      $('.item').removeAttr('id');
-    }
-    if (o.breadcrumbs) {
-      o.breadcrumbs.unshift(0); // add 0 for root node
-      showNode(o, o.node, 0, hash);
-    }
-  }
-
-  const navTo = function(o,root,hash,relpath) {
-    const link = cachedLink();
-    if (link) {
-      const parts = link.split('#');
-      root = parts[0];
-      hash = parts.length>1 ? '#'+parts[1].replace(/[^\w-]/g,'') : '';
-    }
-    if (hash.match(/^#l\d+$/)) {
-      const anchor=$('a[name='+hash.substring(1)+']');
-      glowEffect(anchor.parent(),1000); // line number
-      hash=''; // strip line number anchors
-    }
-    const url=root+hash;
-    let i=-1;
-    while (NAVTREEINDEX[i+1]<=url) i++;
-    if (i==-1) { i=0; root=NAVTREE[0][1]; } // fallback: show index
-    if (navTreeSubIndices[i]) {
-      gotoNode(o,i,root,hash,relpath)
-    } else {
-      getScript(relpath+'navtreeindex'+i,function() {
-        navTreeSubIndices[i] = eval('NAVTREEINDEX'+i);
-        if (navTreeSubIndices[i]) {
-          gotoNode(o,i,root,hash,relpath);
-        }
-      });
-    }
-  }
-
-  const showSyncOff = function(n,relpath) {
-    n.html('<img src="'+relpath+'sync_off.png" title="'+SYNCOFFMSG+'"/>');
-  }
-
-  const showSyncOn = function(n,relpath) {
-    n.html('<img src="'+relpath+'sync_on.png" title="'+SYNCONMSG+'"/>');
-  }
-
-  const o = {
-    toroot : toroot,
-    node   : {
-      childrenData  : NAVTREE,
-      children      : [],
-      childrenUL    : document.createElement("ul"),
-      getChildrenUL : function() { return this.childrenUL },
-      li            : document.getElementById("nav-tree-contents"),
-      depth         : 0,
-      relpath       : relpath,
-      expanded      : false,
-      isLast        : true,
-      plus_img      : document.createElement("span"),
-    },
-  };
-  o.node.li.appendChild(o.node.childrenUL);
-  o.node.plus_img.className = 'arrow';
-  o.node.plus_img.innerHTML = ARROW_RIGHT;
-
-  const navSync = $('#nav-sync');
-  if (cachedLink()) {
-    showSyncOff(navSync,relpath);
-    navSync.removeClass('sync');
   } else {
+    selectAndHighlight(hash);
+  }
+}
+
+function removeToInsertLater(element) {
+  var parentNode = element.parentNode;
+  var nextSibling = element.nextSibling;
+  parentNode.removeChild(element);
+  return function() {
+    if (nextSibling) {
+      parentNode.insertBefore(element, nextSibling);
+    } else {
+      parentNode.appendChild(element);
+    }
+  };
+}
+
+function getNode(o, po)
+{
+  var insertFunction = removeToInsertLater(po.li);
+  po.childrenVisited = true;
+  var l = po.childrenData.length-1;
+  for (var i in po.childrenData) {
+    var nodeData = po.childrenData[i];
+    po.children[i] = newNode(o, po, nodeData[0], nodeData[1], nodeData[2],
+      i==l);
+  }
+  insertFunction();
+}
+
+function gotoNode(o,subIndex,root,hash,relpath)
+{
+  var nti = navTreeSubIndices[subIndex][root+hash];
+  o.breadcrumbs = $.extend(true, [], nti ? nti : navTreeSubIndices[subIndex][root]);
+  if (!o.breadcrumbs && root!=NAVTREE[0][1]) { // fallback: show index
+    navTo(o,NAVTREE[0][1],"",relpath);
+    $('.item').removeClass('selected');
+    $('.item').removeAttr('id');
+  }
+  if (o.breadcrumbs) {
+    o.breadcrumbs.unshift(0); // add 0 for root node
+    showNode(o, o.node, 0, hash);
+  }
+}
+
+function navTo(o,root,hash,relpath)
+{
+  var link = cachedLink();
+  if (link) {
+    var parts = link.split('#');
+    root = parts[0];
+    if (parts.length>1) hash = '#'+parts[1].replace(/[^\w\-]/g,'');
+    else hash='';
+  }
+  if (hash.match(/^#l\d+$/)) {
+    var anchor=$('a[name='+hash.substring(1)+']');
+    glowEffect(anchor.parent(),1000); // line number
+    hash=''; // strip line number anchors
+  }
+  var url=root+hash;
+  var i=-1;
+  while (NAVTREEINDEX[i+1]<=url) i++;
+  if (i==-1) { i=0; root=NAVTREE[0][1]; } // fallback: show index
+  if (navTreeSubIndices[i]) {
+    gotoNode(o,i,root,hash,relpath)
+  } else {
+    getScript(relpath+'navtreeindex'+i,function(){
+      navTreeSubIndices[i] = eval('NAVTREEINDEX'+i);
+      if (navTreeSubIndices[i]) {
+        gotoNode(o,i,root,hash,relpath);
+      }
+    });
+  }
+}
+
+function showSyncOff(n,relpath)
+{
+    n.html('<img src="'+relpath+'sync_off.png" title="'+SYNCOFFMSG+'"/>');
+}
+
+function showSyncOn(n,relpath)
+{
+    n.html('<img src="'+relpath+'sync_on.png" title="'+SYNCONMSG+'"/>');
+}
+
+function toggleSyncButton(relpath)
+{
+  var navSync = $('#nav-sync');
+  if (navSync.hasClass('sync')) {
+    navSync.removeClass('sync');
+    showSyncOff(navSync,relpath);
+    storeLink(stripPath2(pathName())+hashUrl());
+  } else {
+    navSync.addClass('sync');
     showSyncOn(navSync,relpath);
+    deleteLink();
+  }
+}
+
+var loadTriggered = false;
+var readyTriggered = false;
+var loadObject,loadToRoot,loadUrl,loadRelPath;
+
+$(window).on('load',function(){
+  if (readyTriggered) { // ready first
+    navTo(loadObject,loadToRoot,loadUrl,loadRelPath);
+    showRoot();
+  }
+  loadTriggered=true;
+});
+
+function initNavTree(toroot,relpath)
+{
+  var o = new Object();
+  o.toroot = toroot;
+  o.node = new Object();
+  o.node.li = document.getElementById("nav-tree-contents");
+  o.node.childrenData = NAVTREE;
+  o.node.children = new Array();
+  o.node.childrenUL = document.createElement("ul");
+  o.node.getChildrenUL = function() { return o.node.childrenUL; };
+  o.node.li.appendChild(o.node.childrenUL);
+  o.node.depth = 0;
+  o.node.relpath = relpath;
+  o.node.expanded = false;
+  o.node.isLast = true;
+  o.node.plus_img = document.createElement("span");
+  o.node.plus_img.className = 'arrow';
+  o.node.plus_img.innerHTML = arrowRight;
+
+  if (localStorageSupported()) {
+    var navSync = $('#nav-sync');
+    if (cachedLink()) {
+      showSyncOff(navSync,relpath);
+      navSync.removeClass('sync');
+    } else {
+      showSyncOn(navSync,relpath);
+    }
+    navSync.click(function(){ toggleSyncButton(relpath); });
   }
 
-  navSync.click(() => {
-    const navSync = $('#nav-sync');
-    if (navSync.hasClass('sync')) {
-      navSync.removeClass('sync');
-      showSyncOff(navSync,relpath);
-      storeLink(stripPath2(pathName())+hashUrl());
-    } else {
-      navSync.addClass('sync');
-      showSyncOn(navSync,relpath);
-      deleteLink();
-    }
-  });
+  if (loadTriggered) { // load before ready
+    navTo(o,toroot,hashUrl(),relpath);
+    showRoot();
+  } else { // ready before load
+    loadObject  = o;
+    loadToRoot  = toroot;
+    loadUrl     = hashUrl();
+    loadRelPath = relpath;
+    readyTriggered=true;
+  }
 
-  navTo(o,toroot,hashUrl(),relpath);
-  showRoot();
-
-  $(window).bind('hashchange', () => {
-    if (!animationInProgress) {
-      if (window.location.hash && window.location.hash.length>1) {
-        let a;
-        if ($(location).attr('hash')) {
-          const clslink=stripPath(pathName())+':'+hashValue();
-          a=$('.item a[class$="'+clslink.replace(/</g,'\\3c ')+'"]');
-        }
-        if (a==null || !$(a).parent().parent().hasClass('selected')) {
-          $('.item').removeClass('selected');
-          $('.item').removeAttr('id');
-        }
-        const link=stripPath2(pathName());
-        navTo(o,link,hashUrl(),relpath);
-        } else {
-        $('#doc-content').scrollTop(0);
-        $('.item').removeClass('selected');
-        $('.item').removeAttr('id');
-        navTo(o,toroot,hashUrl(),relpath);
-      }
-    }
-  });
+  $(window).bind('hashchange', function(){
+     if (window.location.hash && window.location.hash.length>1){
+       var a;
+       if ($(location).attr('hash')){
+         var clslink=stripPath(pathName())+':'+hashValue();
+         a=$('.item a[class$="'+clslink.replace(/</g,'\\3c ')+'"]');
+       }
+       if (a==null || !$(a).parent().parent().hasClass('selected')){
+         $('.item').removeClass('selected');
+         $('.item').removeAttr('id');
+       }
+       var link=stripPath2(pathName());
+       navTo(o,link,hashUrl(),relpath);
+     } else if (!animationInProgress) {
+       $('#doc-content').scrollTop(0);
+       $('.item').removeClass('selected');
+       $('.item').removeAttr('id');
+       navTo(o,toroot,hashUrl(),relpath);
+     }
+  })
 
   $("div.toc a[href]").click(function(e) {
     e.preventDefault();
-    const aname = $(this).attr("href");
-    gotoAnchor($(aname),aname);
-  });
+    var docContent = $('#doc-content');
+    var aname = $(this).attr("href");
+    gotoAnchor($(aname),aname,true);
+  })
 }
 /* @license-end */
diff --git a/docs/html/navtreedata.js b/docs/html/navtreedata.js
index 2a09bb95..f039213e 100644
--- a/docs/html/navtreedata.js
+++ b/docs/html/navtreedata.js
@@ -49,11 +49,7 @@ var NAVTREE =
         [ "Install Scripts", "index.html#autotoc_md18", [
           [ "Ease of Installation", "index.html#autotoc_md19", null ],
           [ "Reproducibility", "index.html#autotoc_md20", null ],
-          [ "Examples", "index.html#autotoc_md21", [
-            [ "TUI config and saving", "index.html#autotoc_md22", null ],
-            [ "TUI config loading and meson setup", "index.html#autotoc_md23", null ],
-            [ "CLI config loading, setup, and build", "index.html#autotoc_md24", null ]
-          ] ]
+          [ "Examples", "index.html#autotoc_md21", null ]
         ] ],
         [ "Dependency Installation on Common Platforms", "index.html#autotoc_md25", null ],
         [ "Building the C++ Library", "index.html#autotoc_md26", [
@@ -98,23 +94,21 @@ var NAVTREE =
       ] ]
     ] ],
     [ "External Usage", "index.html#autotoc_md56", [
-      [ "C API Overview", "index.html#autotoc_md57", [
-        [ "C Example", "index.html#autotoc_md58", null ]
-      ] ],
-      [ "Fortran API Overview", "index.html#autotoc_md59", [
-        [ "Fortran Example", "index.html#autotoc_md60", null ]
+      [ "Fortran API Overview", "index.html#autotoc_md58", [
+        [ "C Example", "index.html#autotoc_md57", null ],
+        [ "Fortran Example", "index.html#autotoc_md59", null ]
       ] ]
     ] ],
-    [ "Related Projects", "index.html#autotoc_md61", null ],
+    [ "Related Projects", "index.html#autotoc_md60", null ],
     [ "GridFire Python Usage Guide", "md_docs_2static_2usage.html", [
-      [ "Installation", "md_docs_2static_2usage.html#autotoc_md64", [
-        [ "1.1 PyPI Release", "md_docs_2static_2usage.html#autotoc_md65", null ],
-        [ "1.2 Development from Source", "md_docs_2static_2usage.html#autotoc_md66", null ]
+      [ "1. Installation", "md_docs_2static_2usage.html#autotoc_md63", [
+        [ "1.1 PyPI Release", "md_docs_2static_2usage.html#autotoc_md64", null ],
+        [ "1.2 Development from Source", "md_docs_2static_2usage.html#autotoc_md65", null ]
       ] ],
-      [ "Why These Engines and Views?", "md_docs_2static_2usage.html#autotoc_md68", null ],
-      [ "Step-by-Step Example", "md_docs_2static_2usage.html#autotoc_md70", null ],
-      [ "Visualizing Reaction Networks", "md_docs_2static_2usage.html#autotoc_md72", null ],
-      [ "Beyond the Basics", "md_docs_2static_2usage.html#autotoc_md74", null ]
+      [ "2. Why These Engines and Views?", "md_docs_2static_2usage.html#autotoc_md67", null ],
+      [ "3. Step-by-Step Example", "md_docs_2static_2usage.html#autotoc_md69", null ],
+      [ "4. Visualizing Reaction Networks", "md_docs_2static_2usage.html#autotoc_md71", null ],
+      [ "5. Beyond the Basics", "md_docs_2static_2usage.html#autotoc_md73", null ]
     ] ],
     [ "Deprecated List", "deprecated.html", null ],
     [ "Namespaces", "namespaces.html", [
@@ -160,22 +154,22 @@ var NAVTREE =
 
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-"classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a69508797ca0793f6d3f58de4e0b97667",
-"classgridfire_1_1reaction_1_1_weak_reaclib_reaction.html#ac3fc463a1cea6854ea989732e1e5f65a",
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-"functions_vars_i.html",
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-"weak__types_8h.html"
+"CVODE__solver__strategy_8cpp.html",
+"classgridfire_1_1engine_1_1DefinedEngineView.html#af4049e5570bd143d41cab1d4005b6824",
+"classgridfire_1_1engine_1_1GraphEngine.html#aec867f0b43e74c8157f7d5085b55bb96",
+"classgridfire_1_1engine_1_1NetworkPrimingEngineView.html#ad4eec8af1ab1f918fd4e92fac47adaf4",
+"classgridfire_1_1policy_1_1CNOIVChainPolicy.html#a3a73e280dca833ff6517bef9b9193aa1",
+"classgridfire_1_1rates_1_1weak_1_1WeakReaction.html#a14555633289fc3822e927afca7401e49",
+"classgridfire_1_1reaction_1_1ReaclibReaction.html#afec5ccf7a8fb1ba56c8cc852ce858c5e",
+"classgridfire_1_1solver_1_1CVODESolverStrategy.html#afc6c55237df4af240c4c842305085d91",
+"classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a0e1ad148f9f3232992a4b16e440c249a",
+"dir_b854c27c088682f074a57cfa949846df.html",
+"gridfire__extern_8h.html#a94348e7f89768e5dbe4b60018a4af040",
+"namespacegridfire_1_1rates_1_1weak.html#aeddc9527afbf9755d4252f64ad5d70ca",
+"structgridfire_1_1NetIn.html#a0a8d820cfeaa92ee31f253795c57e0d1",
+"structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#ac08d42071950006ccf3c438253ef9ee9",
+"trigger__procedures_8h.html"
 ];
 
-var SYNCONMSG = 'click to disable panel synchronization';
-var SYNCOFFMSG = 'click to enable panel synchronization';
\ No newline at end of file
+var SYNCONMSG = 'click to disable panel synchronisation';
+var SYNCOFFMSG = 'click to enable panel synchronisation';
\ No newline at end of file
diff --git a/docs/html/navtreeindex0.js b/docs/html/navtreeindex0.js
index 528e2c9c..f7f618da 100644
--- a/docs/html/navtreeindex0.js
+++ b/docs/html/navtreeindex0.js
@@ -1,253 +1,253 @@
 var NAVTREEINDEX0 =
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+          <td class="paramtype">const pybind11::module &amp;&#160;</td>
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-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
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-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
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           <td>(</td>
-          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
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           <td>(</td>
-          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;&#160;</td>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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index b027880a..2a61ba3a 100644
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-<script type="text/javascript" src="clipboard.js"></script>
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-          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
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-          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
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           <td>(</td>
-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
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-          <td class="paramtype">pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
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           <td>(</td>
-          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
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           <td>(</td>
-          <td class="paramtype">const pybind11::module &amp;</td>          <td class="paramname"><span class="paramname"><em>m</em></span></td><td>)</td>
+          <td class="paramtype">const pybind11::module &amp;&#160;</td>
+          <td class="paramname"><em>m</em></td><td>)</td>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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-<script type="text/javascript" src="clipboard.js"></script>
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+<script type="text/javascript" src="resize.js"></script>
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-   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+<!-- Generated by Doxygen 1.9.8 -->
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 /* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
 $(function() {
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-  $(function() { init_search(); });
+  initMenu('',true,false,'search.php','Search');
+  $(document).ready(function() { init_search(); });
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 /* @license-end */
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 <script type="text/javascript">
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-$(function(){initNavTree('partition_8h.html',''); initResizable(true); });
+$(document).ready(function(){initNavTree('partition_8h.html',''); initResizable(); });
 /* @license-end */
 </script>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>
-<script type="text/javascript" src="clipboard.js"></script>
 <link href="navtree.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="resize.js"></script>
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+    [ "@123::IsReactionChainPolicy", "concept_0d123_1_1IsReactionChainPolicy.html", null ],
+    [ "@123::IsNetworkPolicy", "concept_0d123_1_1IsNetworkPolicy.html", null ],
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-<script type="text/javascript" src="clipboard.js"></script>
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+          <td class="paramtype">pybind11::module &amp;&#160;</td>
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-  $(function() { init_search(); });
+  initMenu('',true,false,'search.php','Search');
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+$(document).ready(function(){initNavTree('policy_8h.html',''); initResizable(); });
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@@ -748,8 +747,8 @@ var sectionId = 'dynsection-0';
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 <title>Node19&#45;&gt;Node22</title>
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@@ -757,8 +756,8 @@ var sectionId = 'dynsection-0';
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 <title>Node23</title>
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-<text xml:space="preserve" text-anchor="middle" x="1406.88" y="-144.38" font-family="Helvetica,sans-Serif" font-size="10.00">sstream</text>
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@@ -766,8 +765,8 @@ var sectionId = 'dynsection-0';
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 <title>Node19&#45;&gt;Node23</title>
 <g id="a_edge29_Node000019_Node000023"><a xlink:title=" ">
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="1437.34,-160.13 1426.82,-158.92 1434.29,-166.43 1437.34,-160.13"/>
+<path fill="none" stroke="#63b8ff" d="M788.14,-197.95C814.5,-186.78 851.06,-171.29 876.44,-160.53"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="878.06,-163.64 885.9,-156.52 875.33,-157.2 878.06,-163.64"/>
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@@ -775,8 +774,8 @@ var sectionId = 'dynsection-0';
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 <title>Node25</title>
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-<text xml:space="preserve" text-anchor="middle" x="711.88" y="-144.38" font-family="Helvetica,sans-Serif" font-size="10.00">variant</text>
+<polygon fill="#e0e0e0" stroke="#999999" points="2201.5,-156.5 2150.5,-156.5 2150.5,-137.5 2201.5,-137.5 2201.5,-156.5"/>
+<text text-anchor="middle" x="2176" y="-144.5" font-family="Helvetica,sans-Serif" font-size="10.00">variant</text>
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@@ -784,8 +783,8 @@ var sectionId = 'dynsection-0';
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 <title>Node24&#45;&gt;Node25</title>
 <g id="a_edge32_Node000024_Node000025"><a xlink:title=" ">
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="724.99,-166.63 717.23,-159.41 718.8,-169.89 724.99,-166.63"/>
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@@ -793,8 +792,8 @@ var sectionId = 'dynsection-0';
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="1998.77,-32.99 2006.67,-25.94 1996.1,-26.53 1998.77,-32.99"/>
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+<polygon fill="#63b8ff" stroke="#63b8ff" points="2201.98,-30.22 2210.92,-24.52 2200.38,-23.4 2201.98,-30.22"/>
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@@ -802,17 +801,17 @@ var sectionId = 'dynsection-0';
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="2336.61,-32.24 2345.01,-25.78 2334.42,-25.6 2336.61,-32.24"/>
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+<polygon fill="#63b8ff" stroke="#63b8ff" points="121.08,-23.55 110.53,-24.54 119.4,-30.34 121.08,-23.55"/>
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-<g id="edge38_Node000026_Node000010" class="edge">
+<g id="edge39_Node000026_Node000010" class="edge">
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-<g id="a_edge38_Node000026_Node000010"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M1768.41,-199.18C1757.92,-180.35 1736.9,-148.2 1708.88,-133 1361.57,55.33 1213.34,-107.67 825.88,-30.5 822.53,-29.83 819.08,-29.05 815.64,-28.21"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="816.79,-24.89 806.23,-25.73 815.01,-31.66 816.79,-24.89"/>
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+<path fill="none" stroke="#63b8ff" d="M592.48,-197.98C619.02,-189.44 651.78,-177.24 679,-162 697.78,-151.49 697.51,-141.12 717,-132 886.23,-52.84 1109.74,-27.26 1213.1,-19.35"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1213.6,-22.82 1223.31,-18.6 1213.08,-15.84 1213.6,-22.82"/>
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@@ -820,8 +819,26 @@ var sectionId = 'dynsection-0';
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="1624.07,-163.91 1613.49,-164.34 1622.03,-170.6 1624.07,-163.91"/>
+<path fill="none" stroke="#63b8ff" d="M597.86,-197.95C636.37,-188.1 688.01,-174.88 728.49,-164.51"/>
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+</g>
+<!-- Node28 -->
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+<title>Node28</title>
+<g id="a_Node000028"><a xlink:title=" ">
+<polygon fill="#e0e0e0" stroke="#999999" points="670,-156.5 568,-156.5 568,-137.5 670,-137.5 670,-156.5"/>
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+</a>
+</g>
+</g>
+<!-- Node26&#45;&gt;Node28 -->
+<g id="edge37_Node000026_Node000028" class="edge">
+<title>Node26&#45;&gt;Node28</title>
+<g id="a_edge37_Node000026_Node000028"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M559.87,-197.8C571.95,-187.62 588.21,-173.93 600.62,-163.48"/>
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+<g id="edge38_Node000026_Node000030" class="edge">
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-<g id="a_edge37_Node000026_Node000030"><a xlink:title=" ">
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+<g id="edge52_Node000034_Node000003" class="edge">
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+<!-- Node26&#45;&gt;Node28 -->
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+<title>Node26&#45;&gt;Node28</title>
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+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html">gridfire::partition::record::RauscherThielemannPartitionDataRecord</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Packed binary record of Rauscher-Thielemann partition function data for an isotope.  <a href="structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html#details">More...</a><br /></td></tr>
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-  ['reset_45',['reset',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#af4034fa431e6c88fd05c50cce31b2fa0',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::reset()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a9b782cbf033ed2023da6b2d55dcefc4e',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::reset()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a0fe6af73b11b820561bd4e5552890d4e',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::reset()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#a0bcab0247b3db618b76bd6769cf9a2ea',1,'gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::reset()'],['../classgridfire_1_1trigger_1_1_trigger.html#af652af761675736419b961b6946c728d',1,'gridfire::trigger::Trigger::reset()'],['../classgridfire_1_1trigger_1_1_and_trigger.html#a2436d8643911ade907e03fb29531ceaa',1,'gridfire::trigger::AndTrigger::reset()'],['../classgridfire_1_1trigger_1_1_or_trigger.html#ab42043e55c81bac5d3f981bc139579de',1,'gridfire::trigger::OrTrigger::reset()'],['../classgridfire_1_1trigger_1_1_not_trigger.html#afe337517b77e5433d92ded3a64565141',1,'gridfire::trigger::NotTrigger::reset()'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#abf218d255bde157540b51cd6a54f6eb1',1,'gridfire::trigger::EveryNthTrigger::reset()']]],
-  ['rev_5fsparse_5fjac_46',['rev_sparse_jac',['../classgridfire_1_1engine_1_1_graph_engine_1_1_atomic_reverse_rate.html#af5b5eff42682cf278fa4559e50c47eed',1,'gridfire::engine::GraphEngine::AtomicReverseRate::rev_sparse_jac(size_t q, const CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;rt, CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;st) override'],['../classgridfire_1_1engine_1_1_graph_engine_1_1_atomic_reverse_rate.html#abaa48f3861797a4721ab8841424854d3',1,'gridfire::engine::GraphEngine::AtomicReverseRate::rev_sparse_jac(size_t q, const CppAD::vector&lt; bool &gt; &amp;rt, CppAD::vector&lt; bool &gt; &amp;st, const CppAD::vector&lt; double &gt; &amp;x) override'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#ae9d61bdda761da89733408c232d7220e',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate::rev_sparse_jac(size_t q, const CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;rt, CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;st) override'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#a9f2681d58e10b6b740b4588efbce5ae5',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate::rev_sparse_jac(size_t q, const CppAD::vector&lt; bool &gt; &amp;rt, CppAD::vector&lt; bool &gt; &amp;st, const CppAD::vector&lt; double &gt; &amp;x) override']]],
-  ['reverse_47',['reverse',['../classgridfire_1_1engine_1_1_graph_engine_1_1_atomic_reverse_rate.html#a23aed1727ab0cbba996561421e754018',1,'gridfire::engine::GraphEngine::AtomicReverseRate::reverse()'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1_atomic_weak_rate.html#aad13654ea15547c2c95035c3b7937d58',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate::reverse()']]]
+  ['rescueedgespeciesdestructionchannel_44',['rescueEdgeSpeciesDestructionChannel',['../classgridfire_1_1engine_1_1AdaptiveEngineView.html#a85e70c0ff022c31702472aa39fc64816',1,'gridfire::engine::AdaptiveEngineView']]],
+  ['reset_45',['reset',['../classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1SimulationTimeTrigger.html#af4034fa431e6c88fd05c50cce31b2fa0',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::reset()'],['../classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1OffDiagonalTrigger.html#a9b782cbf033ed2023da6b2d55dcefc4e',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::reset()'],['../classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1TimestepCollapseTrigger.html#a0fe6af73b11b820561bd4e5552890d4e',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::reset()'],['../classgridfire_1_1trigger_1_1solver_1_1CVODE_1_1ConvergenceFailureTrigger.html#a0bcab0247b3db618b76bd6769cf9a2ea',1,'gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::reset()'],['../classgridfire_1_1trigger_1_1Trigger.html#af652af761675736419b961b6946c728d',1,'gridfire::trigger::Trigger::reset()'],['../classgridfire_1_1trigger_1_1AndTrigger.html#a2436d8643911ade907e03fb29531ceaa',1,'gridfire::trigger::AndTrigger::reset()'],['../classgridfire_1_1trigger_1_1OrTrigger.html#ab42043e55c81bac5d3f981bc139579de',1,'gridfire::trigger::OrTrigger::reset()'],['../classgridfire_1_1trigger_1_1EveryNthTrigger.html#abf218d255bde157540b51cd6a54f6eb1',1,'gridfire::trigger::EveryNthTrigger::reset()'],['../classgridfire_1_1trigger_1_1NotTrigger.html#afe337517b77e5433d92ded3a64565141',1,'gridfire::trigger::NotTrigger::reset()']]],
+  ['rev_5fsparse_5fjac_46',['rev_sparse_jac',['../classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#a9f2681d58e10b6b740b4588efbce5ae5',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate::rev_sparse_jac(size_t q, const CppAD::vector&lt; bool &gt; &amp;rt, CppAD::vector&lt; bool &gt; &amp;st, const CppAD::vector&lt; double &gt; &amp;x) override'],['../classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#ae9d61bdda761da89733408c232d7220e',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate::rev_sparse_jac(size_t q, const CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;rt, CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;st) override'],['../classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#abaa48f3861797a4721ab8841424854d3',1,'gridfire::engine::GraphEngine::AtomicReverseRate::rev_sparse_jac(size_t q, const CppAD::vector&lt; bool &gt; &amp;rt, CppAD::vector&lt; bool &gt; &amp;st, const CppAD::vector&lt; double &gt; &amp;x) override'],['../classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#af5b5eff42682cf278fa4559e50c47eed',1,'gridfire::engine::GraphEngine::AtomicReverseRate::rev_sparse_jac(size_t q, const CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;rt, CppAD::vector&lt; std::set&lt; size_t &gt; &gt; &amp;st) override']]],
+  ['reverse_47',['reverse',['../classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html#aad13654ea15547c2c95035c3b7937d58',1,'gridfire::rates::weak::WeakReaction::AtomicWeakRate::reverse()'],['../classgridfire_1_1engine_1_1GraphEngine_1_1AtomicReverseRate.html#a23aed1727ab0cbba996561421e754018',1,'gridfire::engine::GraphEngine::AtomicReverseRate::reverse()']]]
 ];
diff --git a/docs/html/search/namespaces_0.js b/docs/html/search/namespaces_0.js
index 0be94ba2..bd13297b 100644
--- a/docs/html/search/namespaces_0.js
+++ b/docs/html/search/namespaces_0.js
@@ -17,7 +17,7 @@ var searchData=
   ['gridfire_3a_3asolver_14',['solver',['../namespacegridfire_1_1solver.html',1,'gridfire']]],
   ['gridfire_3a_3atrigger_15',['trigger',['../namespacegridfire_1_1trigger.html',1,'gridfire']]],
   ['gridfire_3a_3atrigger_3a_3asolver_16',['solver',['../namespacegridfire_1_1trigger_1_1solver.html',1,'gridfire::trigger']]],
-  ['gridfire_3a_3atrigger_3a_3asolver_3a_3acvode_17',['CVODE',['../namespacegridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e.html',1,'gridfire::trigger::solver']]],
+  ['gridfire_3a_3atrigger_3a_3asolver_3a_3acvode_17',['CVODE',['../namespacegridfire_1_1trigger_1_1solver_1_1CVODE.html',1,'gridfire::trigger::solver']]],
   ['gridfire_3a_3autils_18',['utils',['../namespacegridfire_1_1utils.html',1,'gridfire']]],
   ['gridfire_3a_3autils_3a_3ahashing_19',['hashing',['../namespacegridfire_1_1utils_1_1hashing.html',1,'gridfire::utils']]],
   ['gridfire_3a_3autils_3a_3ahashing_3a_3areaction_20',['reaction',['../namespacegridfire_1_1utils_1_1hashing_1_1reaction.html',1,'gridfire::utils::hashing']]],
diff --git a/docs/html/search/related_0.js b/docs/html/search/related_0.js
index c51a0d80..c684601b 100644
--- a/docs/html/search/related_0.js
+++ b/docs/html/search/related_0.js
@@ -1,4 +1,4 @@
 var searchData=
 [
-  ['operator_3c_3c_0',['operator&lt;&lt;',['../structgridfire_1_1engine_1_1_energy_derivatives.html#aa974abdff7fe09c9aea3fcf4ae13b652',1,'gridfire::engine::EnergyDerivatives::operator&lt;&lt;()'],['../structgridfire_1_1engine_1_1_priming_report.html#ac6c3112c984203fd5a672006be421736',1,'gridfire::engine::PrimingReport::operator&lt;&lt;()'],['../structgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#a37b41341696a780dbeee850919a56bf2',1,'gridfire::engine::MultiscalePartitioningEngineView::QSEGroup::operator&lt;&lt;()'],['../classgridfire_1_1policy_1_1_reaction_chain_policy.html#a264e0d1d13c7d4d5f05bdda5d5ada5c0',1,'gridfire::policy::ReactionChainPolicy::operator&lt;&lt;()'],['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f',1,'gridfire::reaction::RateCoefficientSet::operator&lt;&lt;()'],['../classgridfire_1_1reaction_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8',1,'gridfire::reaction::Reaction::operator&lt;&lt;()'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#ae24ad1e38daab536aec6ac72c67e8615',1,'gridfire::reaction::ReaclibReaction::operator&lt;&lt;()'],['../classgridfire_1_1reaction_1_1_logical_reaclib_reaction.html#a495ca800cc1dd224ce2a821a825afafd',1,'gridfire::reaction::LogicalReaclibReaction::operator&lt;&lt;()'],['../classgridfire_1_1reaction_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20',1,'gridfire::reaction::ReactionSet::operator&lt;&lt;()'],['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html#a5a2525ca7e7b2c812b1f67b3b0114aaf',1,'gridfire::rates::weak::WeakReactionEntry::operator&lt;&lt;()'],['../structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b',1,'gridfire::NetOut::operator&lt;&lt;()'],['../classgridfire_1_1engine_1_1_reaction_set.html#a5a5e6ed364794f872c2c819536e24c20',1,'gridfire::engine::ReactionSet::operator&lt;&lt;()'],['../classgridfire_1_1engine_1_1_reaction.html#a2b05ab608187216fc751bd2e42e8b7d8',1,'gridfire::engine::Reaction::operator&lt;&lt;()']]]
+  ['operator_3c_3c_0',['operator&lt;&lt;',['../structgridfire_1_1engine_1_1EnergyDerivatives.html#aa974abdff7fe09c9aea3fcf4ae13b652',1,'gridfire::engine::EnergyDerivatives::operator&lt;&lt;'],['../structgridfire_1_1engine_1_1PrimingReport.html#ac6c3112c984203fd5a672006be421736',1,'gridfire::engine::PrimingReport::operator&lt;&lt;'],['../structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a37b41341696a780dbeee850919a56bf2',1,'gridfire::engine::MultiscalePartitioningEngineView::QSEGroup::operator&lt;&lt;'],['../classgridfire_1_1policy_1_1ReactionChainPolicy.html#a264e0d1d13c7d4d5f05bdda5d5ada5c0',1,'gridfire::policy::ReactionChainPolicy::operator&lt;&lt;'],['../structgridfire_1_1reaction_1_1RateCoefficientSet.html#a31a92f95a27e4430209dfc2bdfa5c40f',1,'gridfire::reaction::RateCoefficientSet::operator&lt;&lt;'],['../classgridfire_1_1reaction_1_1Reaction.html#a2b05ab608187216fc751bd2e42e8b7d8',1,'gridfire::reaction::Reaction::operator&lt;&lt;'],['../classgridfire_1_1reaction_1_1ReaclibReaction.html#ae24ad1e38daab536aec6ac72c67e8615',1,'gridfire::reaction::ReaclibReaction::operator&lt;&lt;'],['../classgridfire_1_1reaction_1_1LogicalReaclibReaction.html#a495ca800cc1dd224ce2a821a825afafd',1,'gridfire::reaction::LogicalReaclibReaction::operator&lt;&lt;'],['../classgridfire_1_1reaction_1_1ReactionSet.html#a5a5e6ed364794f872c2c819536e24c20',1,'gridfire::reaction::ReactionSet::operator&lt;&lt;'],['../structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html#a5a2525ca7e7b2c812b1f67b3b0114aaf',1,'gridfire::rates::weak::WeakReactionEntry::operator&lt;&lt;'],['../structgridfire_1_1NetOut.html#a6996f06951c2a873e5464773ddc7319b',1,'gridfire::NetOut::operator&lt;&lt;']]]
 ];
diff --git a/docs/html/search/search.js b/docs/html/search/search.js
index 666af01e..6fd40c67 100644
--- a/docs/html/search/search.js
+++ b/docs/html/search/search.js
@@ -22,9 +22,58 @@
 
  @licend  The above is the entire license notice for the JavaScript code in this file
  */
-const SEARCH_COOKIE_NAME = ''+'search_grp';
+function convertToId(search)
+{
+  var result = '';
+  for (i=0;i<search.length;i++)
+  {
+    var c = search.charAt(i);
+    var cn = c.charCodeAt(0);
+    if (c.match(/[a-z0-9\u0080-\uFFFF]/))
+    {
+      result+=c;
+    }
+    else if (cn<16)
+    {
+      result+="_0"+cn.toString(16);
+    }
+    else
+    {
+      result+="_"+cn.toString(16);
+    }
+  }
+  return result;
+}
 
-const searchResults = new SearchResults();
+function getXPos(item)
+{
+  var x = 0;
+  if (item.offsetWidth)
+  {
+    while (item && item!=document.body)
+    {
+      x   += item.offsetLeft;
+      item = item.offsetParent;
+    }
+  }
+  return x;
+}
+
+function getYPos(item)
+{
+  var y = 0;
+  if (item.offsetWidth)
+  {
+     while (item && item!=document.body)
+     {
+       y   += item.offsetTop;
+       item = item.offsetParent;
+     }
+  }
+  return y;
+}
+
+var searchResults = new SearchResults("searchResults");
 
 /* A class handling everything associated with the search panel.
 
@@ -33,32 +82,11 @@ const searchResults = new SearchResults();
           storing this instance.  Is needed to be able to set timeouts.
    resultPath - path to use for external files
 */
-function SearchBox(name, resultsPath, extension) {
+function SearchBox(name, resultsPath, extension)
+{
   if (!name || !resultsPath) {  alert("Missing parameters to SearchBox."); }
   if (!extension || extension == "") { extension = ".html"; }
 
-  function getXPos(item) {
-    let x = 0;
-    if (item.offsetWidth) {
-      while (item && item!=document.body) {
-        x   += item.offsetLeft;
-        item = item.offsetParent;
-      }
-    }
-    return x;
-  }
-
-  function getYPos(item) {
-    let y = 0;
-    if (item.offsetWidth) {
-      while (item && item!=document.body) {
-        y   += item.offsetTop;
-        item = item.offsetParent;
-      }
-    }
-    return y;
-  }
-
   // ---------- Instance variables
   this.name                  = name;
   this.resultsPath           = resultsPath;
@@ -74,27 +102,43 @@ function SearchBox(name, resultsPath, extension) {
 
   // ----------- DOM Elements
 
-  this.DOMSearchField              = () => document.getElementById("MSearchField");
-  this.DOMSearchSelect             = () => document.getElementById("MSearchSelect");
-  this.DOMSearchSelectWindow       = () => document.getElementById("MSearchSelectWindow");
-  this.DOMPopupSearchResults       = () => document.getElementById("MSearchResults");
-  this.DOMPopupSearchResultsWindow = () => document.getElementById("MSearchResultsWindow");
-  this.DOMSearchClose              = () => document.getElementById("MSearchClose");
-  this.DOMSearchBox                = () => document.getElementById("MSearchBox");
+  this.DOMSearchField = function()
+  {  return document.getElementById("MSearchField");  }
+
+  this.DOMSearchSelect = function()
+  {  return document.getElementById("MSearchSelect");  }
+
+  this.DOMSearchSelectWindow = function()
+  {  return document.getElementById("MSearchSelectWindow");  }
+
+  this.DOMPopupSearchResults = function()
+  {  return document.getElementById("MSearchResults");  }
+
+  this.DOMPopupSearchResultsWindow = function()
+  {  return document.getElementById("MSearchResultsWindow");  }
+
+  this.DOMSearchClose = function()
+  {  return document.getElementById("MSearchClose"); }
+
+  this.DOMSearchBox = function()
+  {  return document.getElementById("MSearchBox");  }
 
   // ------------ Event Handlers
 
   // Called when focus is added or removed from the search field.
-  this.OnSearchFieldFocus = function(isActive) {
+  this.OnSearchFieldFocus = function(isActive)
+  {
     this.Activate(isActive);
   }
 
-  this.OnSearchSelectShow = function() {
-    const searchSelectWindow = this.DOMSearchSelectWindow();
-    const searchField        = this.DOMSearchSelect();
+  this.OnSearchSelectShow = function()
+  {
+    var searchSelectWindow = this.DOMSearchSelectWindow();
+    var searchField        = this.DOMSearchSelect();
 
-    const left = getXPos(searchField);
-    const top  = getYPos(searchField) + searchField.offsetHeight;
+    var left = getXPos(searchField);
+    var top  = getYPos(searchField);
+    top += searchField.offsetHeight;
 
     // show search selection popup
     searchSelectWindow.style.display='block';
@@ -102,43 +146,55 @@ function SearchBox(name, resultsPath, extension) {
     searchSelectWindow.style.top  =  top  + 'px';
 
     // stop selection hide timer
-    if (this.hideTimeout) {
+    if (this.hideTimeout)
+    {
       clearTimeout(this.hideTimeout);
       this.hideTimeout=0;
     }
     return false; // to avoid "image drag" default event
   }
 
-  this.OnSearchSelectHide = function() {
+  this.OnSearchSelectHide = function()
+  {
     this.hideTimeout = setTimeout(this.CloseSelectionWindow.bind(this),
                                   this.closeSelectionTimeout);
   }
 
   // Called when the content of the search field is changed.
-  this.OnSearchFieldChange = function(evt) {
-    if (this.keyTimeout) { // kill running timer
+  this.OnSearchFieldChange = function(evt)
+  {
+    if (this.keyTimeout) // kill running timer
+    {
       clearTimeout(this.keyTimeout);
       this.keyTimeout = 0;
     }
 
-    const e = evt ? evt : window.event; // for IE
-    if (e.keyCode==40 || e.keyCode==13) {
-      if (e.shiftKey==1) {
+    var e  = (evt) ? evt : window.event; // for IE
+    if (e.keyCode==40 || e.keyCode==13)
+    {
+      if (e.shiftKey==1)
+      {
         this.OnSearchSelectShow();
-        const win=this.DOMSearchSelectWindow();
-        for (let i=0;i<win.childNodes.length;i++) {
-          const child = win.childNodes[i]; // get span within a
-          if (child.className=='SelectItem') {
+        var win=this.DOMSearchSelectWindow();
+        for (i=0;i<win.childNodes.length;i++)
+        {
+          var child = win.childNodes[i]; // get span within a
+          if (child.className=='SelectItem')
+          {
             child.focus();
             return;
           }
         }
         return;
-      } else {
-        const elem = searchResults.NavNext(0);
+      }
+      else
+      {
+        var elem = searchResults.NavNext(0);
         if (elem) elem.focus();
       }
-    } else if (e.keyCode==27) { // Escape out of the search field
+    }
+    else if (e.keyCode==27) // Escape out of the search field
+    {
       e.stopPropagation();
       this.DOMSearchField().blur();
       this.DOMPopupSearchResultsWindow().style.display = 'none';
@@ -149,13 +205,18 @@ function SearchBox(name, resultsPath, extension) {
     }
 
     // strip whitespaces
-    const searchValue = this.DOMSearchField().value.replace(/ +/g, "");
+    var searchValue = this.DOMSearchField().value.replace(/ +/g, "");
 
-    if (searchValue != this.lastSearchValue) { // search value has changed
-      if (searchValue != "") { // non-empty search
+    if (searchValue != this.lastSearchValue) // search value has changed
+    {
+      if (searchValue != "") // non-empty search
+      {
         // set timer for search update
-        this.keyTimeout = setTimeout(this.Search.bind(this), this.keyTimeoutLength);
-      } else { // empty search field
+        this.keyTimeout = setTimeout(this.Search.bind(this),
+                                     this.keyTimeoutLength);
+      }
+      else // empty search field
+      {
         this.DOMPopupSearchResultsWindow().style.display = 'none';
         this.DOMSearchClose().style.display = 'none';
         this.lastSearchValue = '';
@@ -163,44 +224,37 @@ function SearchBox(name, resultsPath, extension) {
     }
   }
 
-  this.SelectItemCount = function() {
-    let count=0;
-    const win=this.DOMSearchSelectWindow();
-    for (let i=0;i<win.childNodes.length;i++) {
-      const child = win.childNodes[i]; // get span within a
-      if (child.className=='SelectItem') {
+  this.SelectItemCount = function(id)
+  {
+    var count=0;
+    var win=this.DOMSearchSelectWindow();
+    for (i=0;i<win.childNodes.length;i++)
+    {
+      var child = win.childNodes[i]; // get span within a
+      if (child.className=='SelectItem')
+      {
         count++;
       }
     }
     return count;
   }
 
-  this.GetSelectionIdByName = function(name) {
-    let j=0;
-    const win=this.DOMSearchSelectWindow();
-    for (let i=0;i<win.childNodes.length;i++) {
-      const child = win.childNodes[i];
-      if (child.className=='SelectItem') {
-        if (child.childNodes[1].nodeValue==name) {
-          return j;
-        }
-        j++;
-      }
-    }
-    return 0;
-  }
-
-  this.SelectItemSet = function(id) {
-    let j=0;
-    const win=this.DOMSearchSelectWindow();
-    for (let i=0;i<win.childNodes.length;i++) {
-      const child = win.childNodes[i]; // get span within a
-      if (child.className=='SelectItem') {
-        const node = child.firstChild;
-        if (j==id) {
+  this.SelectItemSet = function(id)
+  {
+    var i,j=0;
+    var win=this.DOMSearchSelectWindow();
+    for (i=0;i<win.childNodes.length;i++)
+    {
+      var child = win.childNodes[i]; // get span within a
+      if (child.className=='SelectItem')
+      {
+        var node = child.firstChild;
+        if (j==id)
+        {
           node.innerHTML='&#8226;';
-          Cookie.writeSetting(SEARCH_COOKIE_NAME, child.childNodes[1].nodeValue, 0)
-        } else {
+        }
+        else
+        {
           node.innerHTML='&#160;';
         }
         j++;
@@ -210,24 +264,32 @@ function SearchBox(name, resultsPath, extension) {
 
   // Called when an search filter selection is made.
   // set item with index id as the active item
-  this.OnSelectItem = function(id) {
+  this.OnSelectItem = function(id)
+  {
     this.searchIndex = id;
     this.SelectItemSet(id);
-    const searchValue = this.DOMSearchField().value.replace(/ +/g, "");
-    if (searchValue!="" && this.searchActive) { // something was found -> do a search
+    var searchValue = this.DOMSearchField().value.replace(/ +/g, "");
+    if (searchValue!="" && this.searchActive) // something was found -> do a search
+    {
       this.Search();
     }
   }
 
-  this.OnSearchSelectKey = function(evt) {
-    const e = (evt) ? evt : window.event; // for IE
-    if (e.keyCode==40 && this.searchIndex<this.SelectItemCount()) { // Down
+  this.OnSearchSelectKey = function(evt)
+  {
+    var e = (evt) ? evt : window.event; // for IE
+    if (e.keyCode==40 && this.searchIndex<this.SelectItemCount()) // Down
+    {
       this.searchIndex++;
       this.OnSelectItem(this.searchIndex);
-    } else if (e.keyCode==38 && this.searchIndex>0) { // Up
+    }
+    else if (e.keyCode==38 && this.searchIndex>0) // Up
+    {
       this.searchIndex--;
       this.OnSelectItem(this.searchIndex);
-    } else if (e.keyCode==13 || e.keyCode==27) {
+    }
+    else if (e.keyCode==13 || e.keyCode==27)
+    {
       e.stopPropagation();
       this.OnSelectItem(this.searchIndex);
       this.CloseSelectionWindow();
@@ -239,75 +301,82 @@ function SearchBox(name, resultsPath, extension) {
   // --------- Actions
 
   // Closes the results window.
-  this.CloseResultsWindow = function() {
+  this.CloseResultsWindow = function()
+  {
     this.DOMPopupSearchResultsWindow().style.display = 'none';
     this.DOMSearchClose().style.display = 'none';
     this.Activate(false);
   }
 
-  this.CloseSelectionWindow = function() {
+  this.CloseSelectionWindow = function()
+  {
     this.DOMSearchSelectWindow().style.display = 'none';
   }
 
   // Performs a search.
-  this.Search = function() {
+  this.Search = function()
+  {
     this.keyTimeout = 0;
 
     // strip leading whitespace
-    const searchValue = this.DOMSearchField().value.replace(/^ +/, "");
+    var searchValue = this.DOMSearchField().value.replace(/^ +/, "");
 
-    const code = searchValue.toLowerCase().charCodeAt(0);
-    let idxChar = searchValue.substr(0, 1).toLowerCase();
-    if ( 0xD800 <= code && code <= 0xDBFF && searchValue > 1) { // surrogate pair
+    var code = searchValue.toLowerCase().charCodeAt(0);
+    var idxChar = searchValue.substr(0, 1).toLowerCase();
+    if ( 0xD800 <= code && code <= 0xDBFF && searchValue > 1) // surrogate pair
+    {
       idxChar = searchValue.substr(0, 2);
     }
 
-    let jsFile;
-    let idx = indexSectionsWithContent[this.searchIndex].indexOf(idxChar);
-    if (idx!=-1) {
-      const hexCode=idx.toString(16);
-      jsFile = this.resultsPath + indexSectionNames[this.searchIndex] + '_' + hexCode + '.js';
+    var jsFile;
+
+    var idx = indexSectionsWithContent[this.searchIndex].indexOf(idxChar);
+    if (idx!=-1)
+    {
+       var hexCode=idx.toString(16);
+       jsFile = this.resultsPath + indexSectionNames[this.searchIndex] + '_' + hexCode + '.js';
     }
 
-    const loadJS = function(url, impl, loc) {
-      const scriptTag = document.createElement('script');
+    var loadJS = function(url, impl, loc){
+      var scriptTag = document.createElement('script');
       scriptTag.src = url;
       scriptTag.onload = impl;
       scriptTag.onreadystatechange = impl;
       loc.appendChild(scriptTag);
     }
 
-    const domPopupSearchResultsWindow = this.DOMPopupSearchResultsWindow();
-    const domSearchBox = this.DOMSearchBox();
-    const domPopupSearchResults = this.DOMPopupSearchResults();
-    const domSearchClose = this.DOMSearchClose();
-    const resultsPath = this.resultsPath;
+    var domPopupSearchResultsWindow = this.DOMPopupSearchResultsWindow();
+    var domSearchBox = this.DOMSearchBox();
+    var domPopupSearchResults = this.DOMPopupSearchResults();
+    var domSearchClose = this.DOMSearchClose();
+    var resultsPath = this.resultsPath;
 
-    const handleResults = function() {
+    var handleResults = function() {
       document.getElementById("Loading").style.display="none";
       if (typeof searchData !== 'undefined') {
         createResults(resultsPath);
         document.getElementById("NoMatches").style.display="none";
       }
-
+ 
       if (idx!=-1) {
         searchResults.Search(searchValue);
       } else { // no file with search results => force empty search results
         searchResults.Search('====');
       }
 
-      if (domPopupSearchResultsWindow.style.display!='block') {
+      if (domPopupSearchResultsWindow.style.display!='block')
+      {
         domSearchClose.style.display = 'inline-block';
-        let left = getXPos(domSearchBox) + 150;
-        let top  = getYPos(domSearchBox) + 20;
+        var left = getXPos(domSearchBox) + 150;
+        var top  = getYPos(domSearchBox) + 20;
         domPopupSearchResultsWindow.style.display = 'block';
         left -= domPopupSearchResults.offsetWidth;
-        const maxWidth  = document.body.clientWidth;
-        const maxHeight = document.body.clientHeight;
-        let width = 300;
+        var maxWidth  = document.body.clientWidth;
+        var maxHeight = document.body.clientHeight;
+        var width = 300;
         if (left<10) left=10;
         if (width+left+8>maxWidth) width=maxWidth-left-8;
-        let height = 400;
+        var height = 400;
         if (height+top+8>maxHeight) height=maxHeight-top-8;
         domPopupSearchResultsWindow.style.top     = top  + 'px';
         domPopupSearchResultsWindow.style.left    = left + 'px';
@@ -329,13 +398,17 @@ function SearchBox(name, resultsPath, extension) {
 
   // Activates or deactivates the search panel, resetting things to
   // their default values if necessary.
-  this.Activate = function(isActive) {
+  this.Activate = function(isActive)
+  {
     if (isActive || // open it
-      this.DOMPopupSearchResultsWindow().style.display == 'block'
-    ) {
+        this.DOMPopupSearchResultsWindow().style.display == 'block'
+       )
+    {
       this.DOMSearchBox().className = 'MSearchBoxActive';
       this.searchActive = true;
-    } else if (!isActive) { // directly remove the panel
+    }
+    else if (!isActive) // directly remove the panel
+    {
       this.DOMSearchBox().className = 'MSearchBoxInactive';
       this.searchActive             = false;
       this.lastSearchValue          = ''
@@ -348,333 +421,409 @@ function SearchBox(name, resultsPath, extension) {
 // -----------------------------------------------------------------------
 
 // The class that handles everything on the search results page.
-function SearchResults() {
+function SearchResults(name)
+{
+    // The number of matches from the last run of <Search()>.
+    this.lastMatchCount = 0;
+    this.lastKey = 0;
+    this.repeatOn = false;
 
-  function convertToId(search) {
-    let result = '';
-    for (let i=0;i<search.length;i++) {
-      const c = search.charAt(i);
-      const cn = c.charCodeAt(0);
-      if (c.match(/[a-z0-9\u0080-\uFFFF]/)) {
-        result+=c;
-      } else if (cn<16) {
-        result+="_0"+cn.toString(16);
-      } else {
-        result+="_"+cn.toString(16);
-      }
-    }
-    return result;
-  }
+    // Toggles the visibility of the passed element ID.
+    this.FindChildElement = function(id)
+    {
+      var parentElement = document.getElementById(id);
+      var element = parentElement.firstChild;
 
-  // The number of matches from the last run of <Search()>.
-  this.lastMatchCount = 0;
-  this.lastKey = 0;
-  this.repeatOn = false;
-
-  // Toggles the visibility of the passed element ID.
-  this.FindChildElement = function(id) {
-    const parentElement = document.getElementById(id);
-    let element = parentElement.firstChild;
-
-    while (element && element!=parentElement) {
-      if (element.nodeName.toLowerCase() == 'div' && element.className == 'SRChildren') {
-        return element;
-      }
-
-      if (element.nodeName.toLowerCase() == 'div' && element.hasChildNodes()) {
-        element = element.firstChild;
-      } else if (element.nextSibling) {
-        element = element.nextSibling;
-      } else {
-        do {
-          element = element.parentNode;
+      while (element && element!=parentElement)
+      {
+        if (element.nodeName.toLowerCase() == 'div' && element.className == 'SRChildren')
+        {
+          return element;
         }
-        while (element && element!=parentElement && !element.nextSibling);
 
-        if (element && element!=parentElement) {
-          element = element.nextSibling;
+        if (element.nodeName.toLowerCase() == 'div' && element.hasChildNodes())
+        {
+           element = element.firstChild;
         }
-      }
-    }
-  }
-
-  this.Toggle = function(id) {
-    const element = this.FindChildElement(id);
-    if (element) {
-      if (element.style.display == 'block') {
-        element.style.display = 'none';
-      } else {
-        element.style.display = 'block';
-      }
-    }
-  }
-
-  // Searches for the passed string.  If there is no parameter,
-  // it takes it from the URL query.
-  //
-  // Always returns true, since other documents may try to call it
-  // and that may or may not be possible.
-  this.Search = function(search) {
-    if (!search) { // get search word from URL
-      search = window.location.search;
-      search = search.substring(1);  // Remove the leading '?'
-      search = unescape(search);
-    }
-
-    search = search.replace(/^ +/, ""); // strip leading spaces
-    search = search.replace(/ +$/, ""); // strip trailing spaces
-    search = search.toLowerCase();
-    search = convertToId(search);
-
-    const resultRows = document.getElementsByTagName("div");
-    let matches = 0;
-
-    let i = 0;
-    while (i < resultRows.length) {
-      const row = resultRows.item(i);
-      if (row.className == "SRResult") {
-        let rowMatchName = row.id.toLowerCase();
-        rowMatchName = rowMatchName.replace(/^sr\d*_/, ''); // strip 'sr123_'
-
-        if (search.length<=rowMatchName.length &&
-          rowMatchName.substr(0, search.length)==search) {
-          row.style.display = 'block';
-          matches++;
-        } else {
-          row.style.display = 'none';
+        else if (element.nextSibling)
+        {
+           element = element.nextSibling;
         }
-      }
-      i++;
-    }
-    document.getElementById("Searching").style.display='none';
-    if (matches == 0) { // no results
-      document.getElementById("NoMatches").style.display='block';
-    } else { // at least one result
-      document.getElementById("NoMatches").style.display='none';
-    }
-    this.lastMatchCount = matches;
-    return true;
-  }
+        else
+        {
+          do
+          {
+            element = element.parentNode;
+          }
+          while (element && element!=parentElement && !element.nextSibling);
 
-  // return the first item with index index or higher that is visible
-  this.NavNext = function(index) {
-    let focusItem;
-    for (;;) {
-      const focusName = 'Item'+index;
-      focusItem = document.getElementById(focusName);
-      if (focusItem && focusItem.parentNode.parentNode.style.display=='block') {
-        break;
-      } else if (!focusItem) { // last element
-        break;
-      }
-      focusItem=null;
-      index++;
-    }
-    return focusItem;
-  }
-
-  this.NavPrev = function(index) {
-    let focusItem;
-    for (;;) {
-      const focusName = 'Item'+index;
-      focusItem = document.getElementById(focusName);
-      if (focusItem && focusItem.parentNode.parentNode.style.display=='block') {
-        break;
-      } else if (!focusItem) { // last element
-        break;
-      }
-      focusItem=null;
-      index--;
-    }
-    return focusItem;
-  }
-
-  this.ProcessKeys = function(e) {
-    if (e.type == "keydown") {
-      this.repeatOn = false;
-      this.lastKey = e.keyCode;
-    } else if (e.type == "keypress") {
-      if (!this.repeatOn) {
-        if (this.lastKey) this.repeatOn = true;
-        return false; // ignore first keypress after keydown
-      }
-    } else if (e.type == "keyup") {
-      this.lastKey = 0;
-      this.repeatOn = false;
-    }
-    return this.lastKey!=0;
-  }
-
-  this.Nav = function(evt,itemIndex) {
-    const e  = (evt) ? evt : window.event; // for IE
-    if (e.keyCode==13) return true;
-    if (!this.ProcessKeys(e)) return false;
-
-    if (this.lastKey==38) { // Up
-      const newIndex = itemIndex-1;
-      let focusItem = this.NavPrev(newIndex);
-      if (focusItem) {
-        let child = this.FindChildElement(focusItem.parentNode.parentNode.id);
-        if (child && child.style.display == 'block') { // children visible
-          let n=0;
-          let tmpElem;
-          for (;;) { // search for last child
-            tmpElem = document.getElementById('Item'+newIndex+'_c'+n);
-            if (tmpElem) {
-              focusItem = tmpElem;
-            } else { // found it!
-              break;
-            }
-            n++;
+          if (element && element!=parentElement)
+          {
+            element = element.nextSibling;
           }
         }
       }
-      if (focusItem) {
-        focusItem.focus();
-      } else { // return focus to search field
+    }
+
+    this.Toggle = function(id)
+    {
+      var element = this.FindChildElement(id);
+      if (element)
+      {
+        if (element.style.display == 'block')
+        {
+          element.style.display = 'none';
+        }
+        else
+        {
+          element.style.display = 'block';
+        }
+      }
+    }
+
+    // Searches for the passed string.  If there is no parameter,
+    // it takes it from the URL query.
+    //
+    // Always returns true, since other documents may try to call it
+    // and that may or may not be possible.
+    this.Search = function(search)
+    {
+      if (!search) // get search word from URL
+      {
+        search = window.location.search;
+        search = search.substring(1);  // Remove the leading '?'
+        search = unescape(search);
+      }
+
+      search = search.replace(/^ +/, ""); // strip leading spaces
+      search = search.replace(/ +$/, ""); // strip trailing spaces
+      search = search.toLowerCase();
+      search = convertToId(search);
+
+      var resultRows = document.getElementsByTagName("div");
+      var matches = 0;
+
+      var i = 0;
+      while (i < resultRows.length)
+      {
+        var row = resultRows.item(i);
+        if (row.className == "SRResult")
+        {
+          var rowMatchName = row.id.toLowerCase();
+          rowMatchName = rowMatchName.replace(/^sr\d*_/, ''); // strip 'sr123_'
+
+          if (search.length<=rowMatchName.length &&
+             rowMatchName.substr(0, search.length)==search)
+          {
+            row.style.display = 'block';
+            matches++;
+          }
+          else
+          {
+            row.style.display = 'none';
+          }
+        }
+        i++;
+      }
+      document.getElementById("Searching").style.display='none';
+      if (matches == 0) // no results
+      {
+        document.getElementById("NoMatches").style.display='block';
+      }
+      else // at least one result
+      {
+        document.getElementById("NoMatches").style.display='none';
+      }
+      this.lastMatchCount = matches;
+      return true;
+    }
+
+    // return the first item with index index or higher that is visible
+    this.NavNext = function(index)
+    {
+      var focusItem;
+      while (1)
+      {
+        var focusName = 'Item'+index;
+        focusItem = document.getElementById(focusName);
+        if (focusItem && focusItem.parentNode.parentNode.style.display=='block')
+        {
+          break;
+        }
+        else if (!focusItem) // last element
+        {
+          break;
+        }
+        focusItem=null;
+        index++;
+      }
+      return focusItem;
+    }
+
+    this.NavPrev = function(index)
+    {
+      var focusItem;
+      while (1)
+      {
+        var focusName = 'Item'+index;
+        focusItem = document.getElementById(focusName);
+        if (focusItem && focusItem.parentNode.parentNode.style.display=='block')
+        {
+          break;
+        }
+        else if (!focusItem) // last element
+        {
+          break;
+        }
+        focusItem=null;
+        index--;
+      }
+      return focusItem;
+    }
+
+    this.ProcessKeys = function(e)
+    {
+      if (e.type == "keydown")
+      {
+        this.repeatOn = false;
+        this.lastKey = e.keyCode;
+      }
+      else if (e.type == "keypress")
+      {
+        if (!this.repeatOn)
+        {
+          if (this.lastKey) this.repeatOn = true;
+          return false; // ignore first keypress after keydown
+        }
+      }
+      else if (e.type == "keyup")
+      {
+        this.lastKey = 0;
+        this.repeatOn = false;
+      }
+      return this.lastKey!=0;
+    }
+
+    this.Nav = function(evt,itemIndex)
+    {
+      var e  = (evt) ? evt : window.event; // for IE
+      if (e.keyCode==13) return true;
+      if (!this.ProcessKeys(e)) return false;
+
+      if (this.lastKey==38) // Up
+      {
+        var newIndex = itemIndex-1;
+        var focusItem = this.NavPrev(newIndex);
+        if (focusItem)
+        {
+          var child = this.FindChildElement(focusItem.parentNode.parentNode.id);
+          if (child && child.style.display == 'block') // children visible
+          {
+            var n=0;
+            var tmpElem;
+            while (1) // search for last child
+            {
+              tmpElem = document.getElementById('Item'+newIndex+'_c'+n);
+              if (tmpElem)
+              {
+                focusItem = tmpElem;
+              }
+              else // found it!
+              {
+                break;
+              }
+              n++;
+            }
+          }
+        }
+        if (focusItem)
+        {
+          focusItem.focus();
+        }
+        else // return focus to search field
+        {
+           document.getElementById("MSearchField").focus();
+        }
+      }
+      else if (this.lastKey==40) // Down
+      {
+        var newIndex = itemIndex+1;
+        var focusItem;
+        var item = document.getElementById('Item'+itemIndex);
+        var elem = this.FindChildElement(item.parentNode.parentNode.id);
+        if (elem && elem.style.display == 'block') // children visible
+        {
+          focusItem = document.getElementById('Item'+itemIndex+'_c0');
+        }
+        if (!focusItem) focusItem = this.NavNext(newIndex);
+        if (focusItem)  focusItem.focus();
+      }
+      else if (this.lastKey==39) // Right
+      {
+        var item = document.getElementById('Item'+itemIndex);
+        var elem = this.FindChildElement(item.parentNode.parentNode.id);
+        if (elem) elem.style.display = 'block';
+      }
+      else if (this.lastKey==37) // Left
+      {
+        var item = document.getElementById('Item'+itemIndex);
+        var elem = this.FindChildElement(item.parentNode.parentNode.id);
+        if (elem) elem.style.display = 'none';
+      }
+      else if (this.lastKey==27) // Escape
+      {
+        e.stopPropagation();
+        searchBox.CloseResultsWindow();
         document.getElementById("MSearchField").focus();
       }
-    } else if (this.lastKey==40) { // Down
-      const newIndex = itemIndex+1;
-      let focusItem;
-      const item = document.getElementById('Item'+itemIndex);
-      const elem = this.FindChildElement(item.parentNode.parentNode.id);
-      if (elem && elem.style.display == 'block') { // children visible
-        focusItem = document.getElementById('Item'+itemIndex+'_c0');
+      else if (this.lastKey==13) // Enter
+      {
+        return true;
       }
-      if (!focusItem) focusItem = this.NavNext(newIndex);
-      if (focusItem)  focusItem.focus();
-    } else if (this.lastKey==39) { // Right
-      const item = document.getElementById('Item'+itemIndex);
-      const elem = this.FindChildElement(item.parentNode.parentNode.id);
-      if (elem) elem.style.display = 'block';
-    } else if (this.lastKey==37) { // Left
-      const item = document.getElementById('Item'+itemIndex);
-      const elem = this.FindChildElement(item.parentNode.parentNode.id);
-      if (elem) elem.style.display = 'none';
-    } else if (this.lastKey==27) { // Escape
-      e.stopPropagation();
-      searchBox.CloseResultsWindow();
-      document.getElementById("MSearchField").focus();
-    } else if (this.lastKey==13) { // Enter
-      return true;
+      return false;
     }
-    return false;
-  }
 
-  this.NavChild = function(evt,itemIndex,childIndex) {
-    const e  = (evt) ? evt : window.event; // for IE
-    if (e.keyCode==13) return true;
-    if (!this.ProcessKeys(e)) return false;
+    this.NavChild = function(evt,itemIndex,childIndex)
+    {
+      var e  = (evt) ? evt : window.event; // for IE
+      if (e.keyCode==13) return true;
+      if (!this.ProcessKeys(e)) return false;
 
-    if (this.lastKey==38) { // Up
-      if (childIndex>0) {
-        const newIndex = childIndex-1;
-        document.getElementById('Item'+itemIndex+'_c'+newIndex).focus();
-      } else { // already at first child, jump to parent
-        document.getElementById('Item'+itemIndex).focus();
+      if (this.lastKey==38) // Up
+      {
+        if (childIndex>0)
+        {
+          var newIndex = childIndex-1;
+          document.getElementById('Item'+itemIndex+'_c'+newIndex).focus();
+        }
+        else // already at first child, jump to parent
+        {
+          document.getElementById('Item'+itemIndex).focus();
+        }
       }
-    } else if (this.lastKey==40) { // Down
-      const newIndex = childIndex+1;
-      let elem = document.getElementById('Item'+itemIndex+'_c'+newIndex);
-      if (!elem) { // last child, jump to parent next parent
-        elem = this.NavNext(itemIndex+1);
+      else if (this.lastKey==40) // Down
+      {
+        var newIndex = childIndex+1;
+        var elem = document.getElementById('Item'+itemIndex+'_c'+newIndex);
+        if (!elem) // last child, jump to parent next parent
+        {
+          elem = this.NavNext(itemIndex+1);
+        }
+        if (elem)
+        {
+          elem.focus();
+        }
       }
-      if (elem) {
-        elem.focus();
+      else if (this.lastKey==27) // Escape
+      {
+        e.stopPropagation();
+        searchBox.CloseResultsWindow();
+        document.getElementById("MSearchField").focus();
       }
-    } else if (this.lastKey==27) { // Escape
-      e.stopPropagation();
-      searchBox.CloseResultsWindow();
-      document.getElementById("MSearchField").focus();
-    } else if (this.lastKey==13) { // Enter
-      return true;
+      else if (this.lastKey==13) // Enter
+      {
+        return true;
+      }
+      return false;
     }
-    return false;
-  }
 }
 
-function createResults(resultsPath) {
+function setKeyActions(elem,action)
+{
+  elem.setAttribute('onkeydown',action);
+  elem.setAttribute('onkeypress',action);
+  elem.setAttribute('onkeyup',action);
+}
 
-  function setKeyActions(elem,action) {
-    elem.setAttribute('onkeydown',action);
-    elem.setAttribute('onkeypress',action);
-    elem.setAttribute('onkeyup',action);
-  }
+function setClassAttr(elem,attr)
+{
+  elem.setAttribute('class',attr);
+  elem.setAttribute('className',attr);
+}
 
-  function setClassAttr(elem,attr) {
-    elem.setAttribute('class',attr);
-    elem.setAttribute('className',attr);
-  }
-
-  const results = document.getElementById("SRResults");
+function createResults(resultsPath)
+{
+  var results = document.getElementById("SRResults");
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-  searchData.forEach((elem,index) => {
-    const id = elem[0];
-    const srResult = document.createElement('div');
+  for (var e=0; e<searchData.length; e++)
+  {
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+    var srResult = document.createElement('div');
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-    const srLink = document.createElement('a');
-    srLink.setAttribute('id','Item'+index);
-    setKeyActions(srLink,'return searchResults.Nav(event,'+index+')');
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-    if (elem[1].length==2) { // single result
-      srLink.setAttribute('href',resultsPath+elem[1][1][0]);
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-      const srScope = document.createElement('span');
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-        setKeyActions(srChild,'return searchResults.NavChild(event,'+index+','+c+')');
+      for (var c=0; c<searchData[e][1].length-1; c++)
+      {
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+        srChild.setAttribute('id','Item'+e+'_c'+c);
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-        srChild.innerHTML = elem[1][c+1][2];
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-  const results = document.getElementById("MSearchSelectWindow");
-
+function init_search()
+{
+  var results = document.getElementById("MSearchSelectWindow");
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-  for (let key in indexSectionLabels) {
-    const link = document.createElement('a');
+  for (var key in indexSectionLabels)
+  {
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+  searchBox.OnSelectItem(0);
 
-  const input = document.getElementById("MSearchSelect");
-  const searchSelectWindow = document.getElementById("MSearchSelectWindow");
+  var input = document.getElementById("MSearchSelect");
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diff --git a/docs/html/search/searchdata.js b/docs/html/search/searchdata.js
index 8a307162..a3a96153 100644
--- a/docs/html/search/searchdata.js
+++ b/docs/html/search/searchdata.js
@@ -1,6 +1,6 @@
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 {
-  0: "12345:_abcdefghijklmnopqrstuvwz~",
+  0: "12345:@_abcdefghijklmnopqrstuvwz~",
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index 15a4d51c..90e41937 100644
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+<!-- Node64&#45;&gt;Node10 -->
+<g id="edge124_Node000064_Node000010" class="edge">
+<title>Node64&#45;&gt;Node10</title>
+<g id="a_edge124_Node000064_Node000010"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1736.18,-414.27C1857.78,-399.54 2128.89,-361.22 2201.5,-305 2291.6,-235.24 2317.21,-87.13 2323.59,-34.8"/>
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-<!-- Node63&#45;&gt;Node18 -->
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-<title>Node63&#45;&gt;Node18</title>
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-<!-- Node63&#45;&gt;Node19 -->
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-<title>Node63&#45;&gt;Node19</title>
-<g id="a_edge111_Node000063_Node000019"><a xlink:title=" ">
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-<!-- Node63&#45;&gt;Node52 -->
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-<title>Node63&#45;&gt;Node52</title>
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-<!-- Node63&#45;&gt;Node53 -->
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-<title>Node63&#45;&gt;Node53</title>
-<g id="a_edge116_Node000063_Node000053"><a xlink:title=" ">
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-<!-- Node63&#45;&gt;Node64 -->
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-<title>Node63&#45;&gt;Node64</title>
-<g id="a_edge108_Node000063_Node000064"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M2261.99,-420.54C2172.05,-413.5 1983.91,-397.32 1826,-374.25 1825.16,-374.13 1824.32,-374 1823.48,-373.88"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="1824.24,-370.45 1813.82,-372.33 1823.14,-377.37 1824.24,-370.45"/>
+<!-- Node64&#45;&gt;Node11 -->
+<g id="edge125_Node000064_Node000011" class="edge">
+<title>Node64&#45;&gt;Node11</title>
+<g id="a_edge125_Node000064_Node000011"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1736.19,-421.9C1843.61,-420.77 2072.96,-405.66 2230.5,-305 2363.89,-219.77 2496.17,-79.46 2539.09,-32.15"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="2541.74,-34.44 2545.83,-24.66 2536.54,-29.75 2541.74,-34.44"/>
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-<g id="edge109_Node000064_Node000016" class="edge">
+<g id="edge120_Node000064_Node000016" class="edge">
 <title>Node64&#45;&gt;Node16</title>
-<g id="a_edge109_Node000064_Node000016"><a xlink:title=" ">
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-<polygon fill="#63b8ff" stroke="#63b8ff" points="1868.97,-315.64 1877.01,-308.74 1866.42,-309.12 1868.97,-315.64"/>
+<g id="a_edge120_Node000064_Node000016"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1687.39,-406.84C1704.75,-384.28 1738.82,-339.98 1759.44,-313.18"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1762.3,-315.2 1765.62,-305.14 1756.75,-310.93 1762.3,-315.2"/>
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-<!-- Node65&#45;&gt;Node10 -->
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-<title>Node65&#45;&gt;Node10</title>
-<g id="a_edge124_Node000065_Node000010"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M1915.12,-425.33C2003.04,-423.7 2178.82,-407.24 2277,-307.75 2351.63,-232.13 2343.05,-89.41 2336.86,-36.58"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="2340.34,-36.16 2335.59,-26.69 2333.39,-37.05 2340.34,-36.16"/>
+<!-- Node64&#45;&gt;Node17 -->
+<g id="edge122_Node000064_Node000017" class="edge">
+<title>Node64&#45;&gt;Node17</title>
+<g id="a_edge122_Node000064_Node000017"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1617,-413.42C1599.75,-411.28 1580.88,-408.99 1563.5,-407 1444.78,-393.38 1104.52,-402.55 1035.5,-305 1027.8,-294.12 1027.41,-285.6 1035.5,-275 1036.75,-273.36 1137.22,-246.43 1196.32,-230.69"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1197.38,-234.03 1206.14,-228.08 1195.58,-227.27 1197.38,-234.03"/>
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-<!-- Node65&#45;&gt;Node11 -->
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-<title>Node65&#45;&gt;Node11</title>
-<g id="a_edge125_Node000065_Node000011"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M1914.8,-420.52C2000.43,-413.48 2165.42,-397.39 2219,-374.25 2380.25,-304.62 2485.86,-99.23 2515.48,-35.4"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="2518.55,-37.12 2519.5,-26.57 2512.17,-34.23 2518.55,-37.12"/>
+<!-- Node64&#45;&gt;Node23 -->
+<g id="edge126_Node000064_Node000023" class="edge">
+<title>Node64&#45;&gt;Node23</title>
+<g id="a_edge126_Node000064_Node000023"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1616.75,-412.94C1599.58,-410.8 1580.82,-408.64 1563.5,-407 1318.74,-383.88 1249.66,-432.01 1011.5,-371 823.27,-322.78 769.92,-294.18 627.5,-162 605.71,-141.78 583.41,-115.56 569.75,-98.76"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="572.44,-96.51 563.45,-90.91 566.98,-100.9 572.44,-96.51"/>
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-<!-- Node65&#45;&gt;Node16 -->
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-<title>Node65&#45;&gt;Node16</title>
-<g id="a_edge120_Node000065_Node000016"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M1867.99,-409.98C1877.07,-387.95 1894.45,-345.77 1905.62,-318.67"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="1908.84,-320.06 1909.41,-309.48 1902.36,-317.4 1908.84,-320.06"/>
+<!-- Node64&#45;&gt;Node51 -->
+<g id="edge121_Node000064_Node000051" class="edge">
+<title>Node64&#45;&gt;Node51</title>
+<g id="a_edge121_Node000064_Node000051"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1616.92,-411.07C1548.72,-399.7 1437.04,-381.09 1364.15,-368.94"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1364.57,-365.46 1354.13,-367.27 1363.42,-372.37 1364.57,-365.46"/>
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-<!-- Node65&#45;&gt;Node17 -->
-<g id="edge122_Node000065_Node000017" class="edge">
-<title>Node65&#45;&gt;Node17</title>
-<g id="a_edge122_Node000065_Node000017"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M1808.96,-416.69C1761.54,-408.53 1697.12,-394.14 1681,-374.25 1653.81,-340.69 1702.67,-310.41 1675,-277.25 1632.18,-225.94 1593.17,-259.93 1529,-241.25 1521.54,-239.08 1513.62,-236.56 1506.08,-234.06"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="1507.44,-230.82 1496.84,-230.94 1505.2,-237.45 1507.44,-230.82"/>
+<!-- Node64&#45;&gt;Node52 -->
+<g id="edge123_Node000064_Node000052" class="edge">
+<title>Node64&#45;&gt;Node52</title>
+<g id="a_edge123_Node000064_Node000052"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1725.41,-406.96C1815.78,-381.03 2007.24,-326.08 2090.01,-302.33"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="2091.14,-305.65 2099.79,-299.53 2089.21,-298.92 2091.14,-305.65"/>
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-<!-- Node65&#45;&gt;Node23 -->
-<g id="edge126_Node000065_Node000023" class="edge">
-<title>Node65&#45;&gt;Node23</title>
-<g id="a_edge126_Node000065_Node000023"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M1808.92,-419.01C1783.27,-416.35 1752.03,-413.13 1724,-410.25 1341.97,-370.99 1236.34,-409.44 866,-307.75 737.07,-272.35 701.84,-252.43 602,-163.5 579.82,-143.75 557.36,-117.81 543.33,-100.73"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="546.07,-98.56 537.05,-92.99 540.63,-102.96 546.07,-98.56"/>
+<!-- Node64&#45;&gt;Node63 -->
+<g id="edge119_Node000064_Node000063" class="edge">
+<title>Node64&#45;&gt;Node63</title>
+<g id="a_edge119_Node000064_Node000063"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1656.53,-406.8C1644.29,-398.1 1628.44,-386.82 1614.91,-377.2"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1616.6,-374.11 1606.42,-371.16 1612.54,-379.81 1616.6,-374.11"/>
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-<!-- Node65&#45;&gt;Node51 -->
-<g id="edge121_Node000065_Node000051" class="edge">
-<title>Node65&#45;&gt;Node51</title>
-<g id="a_edge121_Node000065_Node000051"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M1809.21,-416.53C1731.24,-404.75 1585.39,-382.72 1500.64,-369.91"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="1501.26,-366.47 1490.85,-368.44 1500.21,-373.39 1501.26,-366.47"/>
+<!-- Node66&#45;&gt;Node16 -->
+<g id="edge128_Node000066_Node000016" class="edge">
+<title>Node66&#45;&gt;Node16</title>
+<g id="a_edge128_Node000066_Node000016"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1492.98,-406.97C1491.88,-389.06 1492.97,-358.33 1510.5,-341 1524.28,-327.37 1630.79,-310.54 1704.77,-300.3"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1705.55,-303.72 1714.98,-298.9 1704.6,-296.79 1705.55,-303.72"/>
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-<!-- Node65&#45;&gt;Node52 -->
-<g id="edge123_Node000065_Node000052" class="edge">
-<title>Node65&#45;&gt;Node52</title>
-<g id="a_edge123_Node000065_Node000052"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M1901.13,-409.85C1969.93,-384.1 2111.48,-331.12 2177.14,-306.55"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="2178.18,-309.89 2186.32,-303.11 2175.73,-303.34 2178.18,-309.89"/>
+<!-- Node66&#45;&gt;Node51 -->
+<g id="edge130_Node000066_Node000051" class="edge">
+<title>Node66&#45;&gt;Node51</title>
+<g id="a_edge130_Node000066_Node000051"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1450.17,-406.95C1419.65,-397.28 1378.92,-384.38 1346.5,-374.11"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1347.32,-370.7 1336.73,-371.01 1345.2,-377.37 1347.32,-370.7"/>
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-<!-- Node65&#45;&gt;Node64 -->
-<g id="edge119_Node000065_Node000064" class="edge">
-<title>Node65&#45;&gt;Node64</title>
-<g id="a_edge119_Node000065_Node000064"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M1836.81,-409.86C1821.77,-401.12 1802.44,-389.89 1785.94,-380.3"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="1787.8,-377.34 1777.4,-375.34 1784.28,-383.39 1787.8,-377.34"/>
+<!-- Node66&#45;&gt;Node63 -->
+<g id="edge129_Node000066_Node000063" class="edge">
+<title>Node66&#45;&gt;Node63</title>
+<g id="a_edge129_Node000066_Node000063"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1514.92,-406.8C1527.54,-398.01 1543.94,-386.61 1557.85,-376.93"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1559.93,-379.75 1566.14,-371.16 1555.93,-374 1559.93,-379.75"/>
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-<!-- Node67&#45;&gt;Node16 -->
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-<title>Node67&#45;&gt;Node16</title>
-<g id="a_edge128_Node000067_Node000016"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M1661.08,-410.04C1660.78,-391.93 1663.2,-361.19 1681,-343.75 1681.78,-342.99 1780.93,-321.97 1850.18,-307.36"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="1850.9,-310.78 1859.96,-305.29 1849.45,-303.93 1850.9,-310.78"/>
+<!-- Node71&#45;&gt;Node3 -->
+<g id="edge136_Node000071_Node000003" class="edge">
+<title>Node71&#45;&gt;Node3</title>
+<g id="a_edge136_Node000071_Node000003"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1648.58,-485.06C1525.3,-479.36 1235.99,-457.11 1011.5,-371 909.62,-331.92 856.96,-334.67 804.5,-239 795.74,-223.02 795.41,-213.79 804.5,-198 820.4,-170.39 840.58,-180.53 866.5,-162 926.26,-119.27 989.92,-59.48 1018.72,-31.54"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="1021.18,-34.03 1025.89,-24.54 1016.29,-29.02 1021.18,-34.03"/>
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-<!-- Node67&#45;&gt;Node51 -->
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-<title>Node67&#45;&gt;Node51</title>
-<g id="a_edge130_Node000067_Node000051"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M1610.21,-409.78C1576.65,-400.25 1532.75,-387.77 1497.28,-377.7"/>
-<polygon fill="#63b8ff" stroke="#63b8ff" points="1498.6,-374.43 1488.03,-375.07 1496.69,-381.17 1498.6,-374.43"/>
+<!-- Node71&#45;&gt;Node6 -->
+<g id="edge134_Node000071_Node000006" class="edge">
+<title>Node71&#45;&gt;Node6</title>
+<g id="a_edge134_Node000071_Node000006"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1768.14,-487.38C1932.04,-487.8 2380.15,-484.56 2424.5,-437 2516.99,-337.82 2497.39,-240.1 2415.5,-132 2371.54,-73.97 2168.94,-40.77 2047.76,-25.78"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="2048.09,-22.29 2037.74,-24.56 2047.24,-29.24 2048.09,-22.29"/>
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-<!-- Node67&#45;&gt;Node64 -->
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-<title>Node67&#45;&gt;Node64</title>
-<g id="a_edge129_Node000067_Node000064"><a xlink:title=" ">
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+<!-- Node71&#45;&gt;Node10 -->
+<g id="edge133_Node000071_Node000010" class="edge">
+<title>Node71&#45;&gt;Node10</title>
+<g id="a_edge133_Node000071_Node000010"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1768.24,-486.15C1934.31,-483.33 2393.03,-472.41 2450.5,-437 2566.16,-365.74 2513.65,-260.81 2470.5,-132 2459.53,-99.26 2455.2,-89.07 2429.5,-66 2410.37,-48.82 2384.28,-36.3 2363.02,-28.09"/>
+<polygon fill="#63b8ff" stroke="#63b8ff" points="2364.22,-24.8 2353.63,-24.61 2361.79,-31.37 2364.22,-24.8"/>
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-<!-- Node72&#45;&gt;Node3 -->
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-<title>Node72&#45;&gt;Node3</title>
-<g id="a_edge136_Node000072_Node000003"><a xlink:title=" ">
-<path fill="none" stroke="#63b8ff" d="M1846.89,-488.87C1668.57,-480.51 1096.34,-443.36 987,-307.75 951.96,-264.29 770.93,-401.64 998,-66.5 1015.23,-41.07 1048.76,-28.26 1074.11,-21.98"/>
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+<!-- Node71&#45;&gt;Node11 -->
+<g id="edge135_Node000071_Node000011" class="edge">
+<title>Node71&#45;&gt;Node11</title>
+<g id="a_edge135_Node000071_Node000011"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1768.28,-486.46C1925.7,-484.5 2348.7,-475.69 2482.5,-437 2553.96,-416.34 2629.5,-431.38 2629.5,-357 2629.5,-357 2629.5,-357 2629.5,-146 2629.5,-99.46 2592.75,-54.79 2570.36,-31.89"/>
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-<!-- Node72&#45;&gt;Node6 -->
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-<title>Node72&#45;&gt;Node6</title>
-<g id="a_edge134_Node000072_Node000006"><a xlink:title=" ">
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+<!-- Node71&#45;&gt;Node23 -->
+<g id="edge137_Node000071_Node000023" class="edge">
+<title>Node71&#45;&gt;Node23</title>
+<g id="a_edge137_Node000071_Node000023"><a xlink:title=" ">
+<path fill="none" stroke="#63b8ff" d="M1648.74,-487.32C1451.47,-487.35 824.24,-478.76 659.5,-371 565.85,-309.74 556.54,-154.4 556.21,-100.64"/>
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-<!-- Node72&#45;&gt;Node10 -->
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+<!-- Node62&#45;&gt;Node10 -->
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+<!-- Node62&#45;&gt;Node11 -->
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+<title>Node62&#45;&gt;Node11</title>
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+<!-- Node62&#45;&gt;Node16 -->
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+<!-- Node62&#45;&gt;Node17 -->
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+<title>Node62&#45;&gt;Node17</title>
+<g id="a_edge112_Node000062_Node000017"><a xlink:title=" ">
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+<!-- Node62&#45;&gt;Node18 -->
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+<title>Node62&#45;&gt;Node18</title>
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+<!-- Node62&#45;&gt;Node19 -->
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+<title>Node62&#45;&gt;Node19</title>
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+<!-- Node62&#45;&gt;Node52 -->
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+<title>Node62&#45;&gt;Node52</title>
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+<!-- Node62&#45;&gt;Node53 -->
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+<title>Node62&#45;&gt;Node53</title>
+<g id="a_edge116_Node000062_Node000053"><a xlink:title=" ">
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+<!-- Node62&#45;&gt;Node63 -->
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+<title>Node62&#45;&gt;Node63</title>
+<g id="a_edge108_Node000062_Node000063"><a xlink:title=" ">
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+<g id="edge109_Node000063_Node000016" class="edge">
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+<!-- Node64&#45;&gt;Node10 -->
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+<title>Node64&#45;&gt;Node10</title>
+<g id="a_edge124_Node000064_Node000010"><a xlink:title=" ">
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+<!-- Node64&#45;&gt;Node11 -->
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+<title>Node64&#45;&gt;Node11</title>
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+<!-- Node64&#45;&gt;Node17 -->
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+<title>Node64&#45;&gt;Node17</title>
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+<title>Node64&#45;&gt;Node23</title>
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+<!-- Node64&#45;&gt;Node51 -->
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+<div class="header">
+  <div class="headertitle"><div class="title">GridFireContext Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structGridFireContext.html">GridFireContext</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="structGridFireContext.html#ad3e84807850731ccdafe782aa5a81622">engine</a></td><td class="entry"><a class="el" href="structGridFireContext.html">GridFireContext</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structGridFireContext.html#a1b75911fd12ec1cd83d20d91df621bee">evolve</a>(const double *Y_in, size_t num_species, double T, double rho, double tMax, double dt0, double *Y_out, double &amp;energy_out, double &amp;dEps_dT, double &amp;dEps_dRho, double &amp;specific_neutrino_energy_loss, double &amp;specific_neutrino_flux, double &amp;mass_lost)</td><td class="entry"><a class="el" href="structGridFireContext.html">GridFireContext</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structGridFireContext.html#ae3df28c7f511f08361447608658b1482">init_composition_from_abundance_vector</a>(const double *abundances, size_t num_species)</td><td class="entry"><a class="el" href="structGridFireContext.html">GridFireContext</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structGridFireContext.html#a69ed916218fd480536157b243ef2a5bc">init_engine_from_policy</a>(const std::string &amp;policy_name, const double *abundances, size_t num_species)</td><td class="entry"><a class="el" href="structGridFireContext.html">GridFireContext</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structGridFireContext.html#a6bf34e315a577e366220b13b0e577338">init_solver_from_engine</a>(const std::string &amp;solver_name)</td><td class="entry"><a class="el" href="structGridFireContext.html">GridFireContext</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structGridFireContext.html#aedfc79fcb51a71f8b3ef74fe771f9918">init_species_map</a>(const std::vector&lt; std::string &gt; &amp;species_names)</td><td class="entry"><a class="el" href="structGridFireContext.html">GridFireContext</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structGridFireContext.html#a62b3e9b15e0892339d1f7af0d063dc89">last_error</a></td><td class="entry"><a class="el" href="structGridFireContext.html">GridFireContext</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structGridFireContext.html#af2c2beed9c6710d8e2fb39fc8ac0eb60">policy</a></td><td class="entry"><a class="el" href="structGridFireContext.html">GridFireContext</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structGridFireContext.html#a958e9c99e8759bf8388df5689fd45baa">solver</a></td><td class="entry"><a class="el" href="structGridFireContext.html">GridFireContext</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structGridFireContext.html#af6c7cfb326dd3540ce615ecb67935959">speciesList</a></td><td class="entry"><a class="el" href="structGridFireContext.html">GridFireContext</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structGridFireContext.html#a8b8c3451f5fee848e4d552ba05be12a0">working_comp</a></td><td class="entry"><a class="el" href="structGridFireContext.html">GridFireContext</a></td><td class="entry"></td></tr>
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structGridFireContext-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">GridFireContext Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;gridfire_context.h&gt;</code></p>
+<div class="dynheader">
+Collaboration diagram for GridFireContext:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="structGridFireContext__coll__graph.svg" width="100%" height="562"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:aedfc79fcb51a71f8b3ef74fe771f9918" id="r_aedfc79fcb51a71f8b3ef74fe771f9918"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structGridFireContext.html#aedfc79fcb51a71f8b3ef74fe771f9918">init_species_map</a> (const std::vector&lt; std::string &gt; &amp;species_names)</td></tr>
+<tr class="separator:aedfc79fcb51a71f8b3ef74fe771f9918"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a69ed916218fd480536157b243ef2a5bc" id="r_a69ed916218fd480536157b243ef2a5bc"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structGridFireContext.html#a69ed916218fd480536157b243ef2a5bc">init_engine_from_policy</a> (const std::string &amp;policy_name, const double *abundances, size_t num_species)</td></tr>
+<tr class="separator:a69ed916218fd480536157b243ef2a5bc"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6bf34e315a577e366220b13b0e577338" id="r_a6bf34e315a577e366220b13b0e577338"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structGridFireContext.html#a6bf34e315a577e366220b13b0e577338">init_solver_from_engine</a> (const std::string &amp;solver_name)</td></tr>
+<tr class="separator:a6bf34e315a577e366220b13b0e577338"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae3df28c7f511f08361447608658b1482" id="r_ae3df28c7f511f08361447608658b1482"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structGridFireContext.html#ae3df28c7f511f08361447608658b1482">init_composition_from_abundance_vector</a> (const double *abundances, size_t num_species)</td></tr>
+<tr class="separator:ae3df28c7f511f08361447608658b1482"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a1b75911fd12ec1cd83d20d91df621bee"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:af2c2beed9c6710d8e2fb39fc8ac0eb60" id="r_af2c2beed9c6710d8e2fb39fc8ac0eb60"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html">gridfire::policy::NetworkPolicy</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structGridFireContext.html#af2c2beed9c6710d8e2fb39fc8ac0eb60">policy</a></td></tr>
+<tr class="separator:af2c2beed9c6710d8e2fb39fc8ac0eb60"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad3e84807850731ccdafe782aa5a81622" id="r_ad3e84807850731ccdafe782aa5a81622"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structGridFireContext.html#ad3e84807850731ccdafe782aa5a81622">engine</a></td></tr>
+<tr class="separator:ad3e84807850731ccdafe782aa5a81622"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a958e9c99e8759bf8388df5689fd45baa"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:af6c7cfb326dd3540ce615ecb67935959" id="r_af6c7cfb326dd3540ce615ecb67935959"><td class="memItemLeft" align="right" valign="top">std::vector&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structGridFireContext.html#af6c7cfb326dd3540ce615ecb67935959">speciesList</a></td></tr>
+<tr class="separator:af6c7cfb326dd3540ce615ecb67935959"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a8b8c3451f5fee848e4d552ba05be12a0" id="r_a8b8c3451f5fee848e4d552ba05be12a0"><td class="memItemLeft" align="right" valign="top">fourdst::composition::Composition&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structGridFireContext.html#a8b8c3451f5fee848e4d552ba05be12a0">working_comp</a></td></tr>
+<tr class="separator:a8b8c3451f5fee848e4d552ba05be12a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a62b3e9b15e0892339d1f7af0d063dc89"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a1b75911fd12ec1cd83d20d91df621bee" name="a1b75911fd12ec1cd83d20d91df621bee"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1b75911fd12ec1cd83d20d91df621bee">&#9670;&#160;</a></span>evolve()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">int GridFireContext::evolve </td>
+          <td>(</td>
+          <td class="paramtype">const double *&#160;</td>
+          <td class="paramname"><em>Y_in</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>num_species</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>T</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>tMax</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>dt0</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double *&#160;</td>
+          <td class="paramname"><em>Y_out</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double &amp;&#160;</td>
+          <td class="paramname"><em>energy_out</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double &amp;&#160;</td>
+          <td class="paramname"><em>dEps_dT</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double &amp;&#160;</td>
+          <td class="paramname"><em>dEps_dRho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double &amp;&#160;</td>
+          <td class="paramname"><em>specific_neutrino_energy_loss</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double &amp;&#160;</td>
+          <td class="paramname"><em>specific_neutrino_flux</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double &amp;&#160;</td>
+          <td class="paramname"><em>mass_lost</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae3df28c7f511f08361447608658b1482" name="ae3df28c7f511f08361447608658b1482"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae3df28c7f511f08361447608658b1482">&#9670;&#160;</a></span>init_composition_from_abundance_vector()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">void GridFireContext::init_composition_from_abundance_vector </td>
+          <td>(</td>
+          <td class="paramtype">const double *&#160;</td>
+          <td class="paramname"><em>abundances</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>num_species</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
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+</div>
+</div>
+<a id="a69ed916218fd480536157b243ef2a5bc" name="a69ed916218fd480536157b243ef2a5bc"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a69ed916218fd480536157b243ef2a5bc">&#9670;&#160;</a></span>init_engine_from_policy()</h2>
+
+<div class="memitem">
+<div class="memproto">
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+        <tr>
+          <td class="memname">void GridFireContext::init_engine_from_policy </td>
+          <td>(</td>
+          <td class="paramtype">const std::string &amp;&#160;</td>
+          <td class="paramname"><em>policy_name</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const double *&#160;</td>
+          <td class="paramname"><em>abundances</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>num_species</em>&#160;</td>
+        </tr>
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+<h2 class="memtitle"><span class="permalink"><a href="#a6bf34e315a577e366220b13b0e577338">&#9670;&#160;</a></span>init_solver_from_engine()</h2>
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+        <tr>
+          <td class="memname">void GridFireContext::init_solver_from_engine </td>
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+<a id="aedfc79fcb51a71f8b3ef74fe771f9918" name="aedfc79fcb51a71f8b3ef74fe771f9918"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aedfc79fcb51a71f8b3ef74fe771f9918">&#9670;&#160;</a></span>init_species_map()</h2>
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+<div class="memitem">
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+          <td class="memname">void GridFireContext::init_species_map </td>
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+          <td class="paramtype">const std::vector&lt; std::string &gt; &amp;&#160;</td>
+          <td class="paramname"><em>species_names</em></td><td>)</td>
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+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="ad3e84807850731ccdafe782aa5a81622" name="ad3e84807850731ccdafe782aa5a81622"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad3e84807850731ccdafe782aa5a81622">&#9670;&#160;</a></span>engine</h2>
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+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">gridfire::engine::DynamicEngine</a>* GridFireContext::engine</td>
+        </tr>
+      </table>
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+          <td class="memname">std::string GridFireContext::last_error</td>
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+</div>
+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#af2c2beed9c6710d8e2fb39fc8ac0eb60">&#9670;&#160;</a></span>policy</h2>
+
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+          <td class="memname">std::unique_ptr&lt;<a class="el" href="classgridfire_1_1policy_1_1NetworkPolicy.html">gridfire::policy::NetworkPolicy</a>&gt; GridFireContext::policy</td>
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+<h2 class="memtitle"><span class="permalink"><a href="#af6c7cfb326dd3540ce615ecb67935959">&#9670;&#160;</a></span>speciesList</h2>
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+
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+<hr/>The documentation for this struct was generated from the following files:<ul>
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+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1NetIn.html#a13058f4929e72c1187abbebcddb8aed1">composition</a></td><td class="entry"><a class="el" href="structgridfire_1_1NetIn.html">gridfire::NetIn</a></td><td class="entry"></td></tr>
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+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1NetIn.html#a4e556f7bb18f46654b3445476734076a">dt0</a></td><td class="entry"><a class="el" href="structgridfire_1_1NetIn.html">gridfire::NetIn</a></td><td class="entry"></td></tr>
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+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1NetIn.html#a5be0f5195a5cd1dd177b9fc5ab83a7be">temperature</a></td><td class="entry"><a class="el" href="structgridfire_1_1NetIn.html">gridfire::NetIn</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1NetIn.html#a0a8d820cfeaa92ee31f253795c57e0d1">tMax</a></td><td class="entry"><a class="el" href="structgridfire_1_1NetIn.html">gridfire::NetIn</a></td><td class="entry"></td></tr>
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+<div class="header">
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+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1NetIn-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::NetIn Struct Reference</div></div>
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+<p><code>#include &lt;types.h&gt;</code></p>
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
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+<tr class="memdesc:a13058f4929e72c1187abbebcddb8aed1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Composition of the network.  <br /></td></tr>
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+<tr class="memdesc:a0a8d820cfeaa92ee31f253795c57e0d1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum time.  <br /></td></tr>
+<tr class="separator:a0a8d820cfeaa92ee31f253795c57e0d1"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a4e556f7bb18f46654b3445476734076a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Initial time step.  <br /></td></tr>
+<tr class="separator:a4e556f7bb18f46654b3445476734076a"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a5be0f5195a5cd1dd177b9fc5ab83a7be"><td class="mdescLeft">&#160;</td><td class="mdescRight">Temperature in Kelvin.  <br /></td></tr>
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+<tr class="memdesc:ae1fbce804bafa6ad2be4ac3470dac93b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Energy in ergs.  <br /></td></tr>
+<tr class="separator:ae1fbce804bafa6ad2be4ac3470dac93b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a6a5e909b46094ffa20da9a3da906e43f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Culling threshold for reactions (default is 0.0, meaning no culling)  <br /></td></tr>
+<tr class="separator:a6a5e909b46094ffa20da9a3da906e43f"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a13058f4929e72c1187abbebcddb8aed1" name="a13058f4929e72c1187abbebcddb8aed1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a13058f4929e72c1187abbebcddb8aed1">&#9670;&#160;</a></span>composition</h2>
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+<p>Composition of the network. </p>
+
+</div>
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+          <td class="memname">double gridfire::NetIn::culling = 0.0</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Culling threshold for reactions (default is 0.0, meaning no culling) </p>
+
+</div>
+</div>
+<a id="a06f0dff9f8927b7cf2da3004c8fa1577" name="a06f0dff9f8927b7cf2da3004c8fa1577"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a06f0dff9f8927b7cf2da3004c8fa1577">&#9670;&#160;</a></span>density</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::NetIn::density</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Density in g/cm^3. </p>
+
+</div>
+</div>
+<a id="a4e556f7bb18f46654b3445476734076a" name="a4e556f7bb18f46654b3445476734076a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4e556f7bb18f46654b3445476734076a">&#9670;&#160;</a></span>dt0</h2>
+
+<div class="memitem">
+<div class="memproto">
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+        <tr>
+          <td class="memname">double gridfire::NetIn::dt0</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Initial time step. </p>
+
+</div>
+</div>
+<a id="ae1fbce804bafa6ad2be4ac3470dac93b" name="ae1fbce804bafa6ad2be4ac3470dac93b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae1fbce804bafa6ad2be4ac3470dac93b">&#9670;&#160;</a></span>energy</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::NetIn::energy</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Energy in ergs. </p>
+
+</div>
+</div>
+<a id="a5be0f5195a5cd1dd177b9fc5ab83a7be" name="a5be0f5195a5cd1dd177b9fc5ab83a7be"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5be0f5195a5cd1dd177b9fc5ab83a7be">&#9670;&#160;</a></span>temperature</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::NetIn::temperature</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Temperature in Kelvin. </p>
+
+</div>
+</div>
+<a id="a0a8d820cfeaa92ee31f253795c57e0d1" name="a0a8d820cfeaa92ee31f253795c57e0d1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0a8d820cfeaa92ee31f253795c57e0d1">&#9670;&#160;</a></span>tMax</h2>
+
+<div class="memitem">
+<div class="memproto">
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+        <tr>
+          <td class="memname">double gridfire::NetIn::tMax</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Maximum time. </p>
+
+</div>
+</div>
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+</div>
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+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="structgridfire_1_1NetOut-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::NetOut Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;types.h&gt;</code></p>
+<div class="dynheader">
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+<div class="dyncontent">
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+        <tr>
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+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a073529511ae0e52f868b47cce0e8ac0a" name="a073529511ae0e52f868b47cce0e8ac0a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a073529511ae0e52f868b47cce0e8ac0a">&#9670;&#160;</a></span>composition</h2>
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+<div class="memitem">
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+          <td class="memname">fourdst::composition::Composition gridfire::NetOut::composition</td>
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+<p>Composition of the network after evaluation. </p>
+
+</div>
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+
+<p>Partial derivative of energy generation rate with respect to density. </p>
+
+</div>
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+
+<p>Partial derivative of energy generation rate with respect to temperature. </p>
+
+</div>
+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#a43d5a861708992c949f616aa2a035ec6">&#9670;&#160;</a></span>energy</h2>
+
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+<p>Energy in ergs after evaluation. </p>
+
+</div>
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+          <td class="memname">int gridfire::NetOut::num_steps</td>
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+<p>Number of steps taken in the evaluation. </p>
+
+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#a801b7bf34375fc56cc6e6cdaef77b070">&#9670;&#160;</a></span>specific_neutrino_energy_loss</h2>
+
+<div class="memitem">
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+          <td class="memname">double gridfire::NetOut::specific_neutrino_energy_loss</td>
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+<p>Neutrino energy loss rate in ergs/g/s. </p>
+
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+<a id="a84a4f64f5a6b7ff965c36b4f7f8aa8f6" name="a84a4f64f5a6b7ff965c36b4f7f8aa8f6"></a>
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+
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+
+<p>Total neutrino flux in neutrinos/g/s. </p>
+
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+<hr/>The documentation for this struct was generated from the following file:<ul>
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+<p>A struct to hold a reaction and its flow rate.  
+ <a href="structgridfire_1_1engine_1_1AdaptiveEngineView_1_1ReactionFlow.html#details">More...</a></p>
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+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
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+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html#a121c9ec02cae31730f81cec9a8774e6e">dEps_dT</a></td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html">gridfire::engine::EnergyDerivatives</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html#aa974abdff7fe09c9aea3fcf4ae13b652">operator&lt;&lt;</a></td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html">gridfire::engine::EnergyDerivatives</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
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diff --git a/docs/html/structgridfire_1_1engine_1_1EnergyDerivatives.html b/docs/html/structgridfire_1_1engine_1_1EnergyDerivatives.html
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+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="structgridfire_1_1engine_1_1EnergyDerivatives-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::engine::EnergyDerivatives Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Structure holding derivatives of energy generation rate with respect to T and rho.  
+ <a href="structgridfire_1_1engine_1_1EnergyDerivatives.html#details">More...</a></p>
+
+<p><code>#include &lt;engine_abstract.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:a121c9ec02cae31730f81cec9a8774e6e" id="r_a121c9ec02cae31730f81cec9a8774e6e"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html#a121c9ec02cae31730f81cec9a8774e6e">dEps_dT</a> = 0.0</td></tr>
+<tr class="memdesc:a121c9ec02cae31730f81cec9a8774e6e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Partial derivative of energy generation rate with respect to temperature.  <br /></td></tr>
+<tr class="separator:a121c9ec02cae31730f81cec9a8774e6e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3017720ca1eb0a7567d6a1e30c8bfc5e" id="r_a3017720ca1eb0a7567d6a1e30c8bfc5e"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html#a3017720ca1eb0a7567d6a1e30c8bfc5e">dEps_dRho</a> = 0.0</td></tr>
+<tr class="memdesc:a3017720ca1eb0a7567d6a1e30c8bfc5e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Partial derivative of energy generation rate with respect to density.  <br /></td></tr>
+<tr class="separator:a3017720ca1eb0a7567d6a1e30c8bfc5e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="friends" name="friends"></a>
+Friends</h2></td></tr>
+<tr class="memitem:aa974abdff7fe09c9aea3fcf4ae13b652" id="r_aa974abdff7fe09c9aea3fcf4ae13b652"><td class="memItemLeft" align="right" valign="top">std::ostream &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html#aa974abdff7fe09c9aea3fcf4ae13b652">operator&lt;&lt;</a> (std::ostream &amp;os, const <a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html">EnergyDerivatives</a> &amp;ed)</td></tr>
+<tr class="separator:aa974abdff7fe09c9aea3fcf4ae13b652"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Structure holding derivatives of energy generation rate with respect to T and rho. </p>
+<p>This struct encapsulates the partial derivatives of the specific nuclear energy generation rate with respect to temperature and density. </p>
+</div><h2 class="groupheader">Friends And Related Symbol Documentation</h2>
+<a id="aa974abdff7fe09c9aea3fcf4ae13b652" name="aa974abdff7fe09c9aea3fcf4ae13b652"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa974abdff7fe09c9aea3fcf4ae13b652">&#9670;&#160;</a></span>operator&lt;&lt;</h2>
+
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+  <td class="mlabels-left">
+      <table class="memname">
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+          <td>(</td>
+          <td class="paramtype">std::ostream &amp;&#160;</td>
+          <td class="paramname"><em>os</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1engine_1_1EnergyDerivatives.html">EnergyDerivatives</a> &amp;&#160;</td>
+          <td class="paramname"><em>ed</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
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+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a3017720ca1eb0a7567d6a1e30c8bfc5e" name="a3017720ca1eb0a7567d6a1e30c8bfc5e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3017720ca1eb0a7567d6a1e30c8bfc5e">&#9670;&#160;</a></span>dEps_dRho</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::engine::EnergyDerivatives::dEps_dRho = 0.0</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Partial derivative of energy generation rate with respect to density. </p>
+
+</div>
+</div>
+<a id="a121c9ec02cae31730f81cec9a8774e6e" name="a121c9ec02cae31730f81cec9a8774e6e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a121c9ec02cae31730f81cec9a8774e6e">&#9670;&#160;</a></span>dEps_dT</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::engine::EnergyDerivatives::dEps_dT = 0.0</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Partial derivative of energy generation rate with respect to temperature. </p>
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/engine/<a class="el" href="engine__abstract_8h.html">engine_abstract.h</a></li>
+</ul>
+</div><!-- contents -->
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
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+<a id="a8be44cfc0731bb53861e1772027b36a4" name="a8be44cfc0731bb53861e1772027b36a4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8be44cfc0731bb53861e1772027b36a4">&#9670;&#160;</a></span>affected_species_indices</h2>
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+<div class="memitem">
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+
+</div>
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+<p>Powers of each unique product in the reverse reaction. </p>
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+<div class="header">
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+  <div class="headertitle"><div class="title">gridfire::engine::GraphEngine::constants Struct Reference</div></div>
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+
+<p>Speed of light in cm/s. </p>
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+
+<p>Boltzmann constant in erg/K. </p>
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+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#a6081352e225c991867f8b0bbe0e40afb">&#9670;&#160;</a></span>MeV_to_erg</h2>
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+<p>Atomic mass unit in g. </p>
+
+</div>
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
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+</table>
+</div>
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+<!-- Generated by Doxygen 1.9.8 -->
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+<div id="doc-content">
+<!-- window showing the filter options -->
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+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a4d706c8d2a49910135d7c599ce645a9e">algebraic_species</a></td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a64018f4dd6c225b0790a0fd4065a0972">contains</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a553a39a2a8e6cea1d6f849cb7097fee6">containsAlgebraic</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#aa65229a4974b74ce4fc3f7c0544fbe91">containsSeed</a>(const fourdst::atomic::Species &amp;species) const</td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a7f4715e3f2f2b6cc35a94f0f4105db30">is_in_equilibrium</a></td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#abb89ee3a7eaaadba05b6e08a22f2e5d6">mean_timescale</a></td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a5ec476b65fcedc5e4eb603a18037bf25">operator!=</a>(const QSEGroup &amp;other) const</td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#ac9f99ea2754b419d030e92c314fba4ed">operator&lt;</a>(const QSEGroup &amp;other) const</td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a37b41341696a780dbeee850919a56bf2">operator&lt;&lt;</a></td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a846d372046454aa0ff97a4c83d85b96d">operator==</a>(const QSEGroup &amp;other) const</td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#adc1710fde415de7a337dbec664b16e45">operator&gt;</a>(const QSEGroup &amp;other) const</td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a9434050b990ecfa0459feebff3047ee2">seed_species</a></td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#aa56ff69de9025ce559202c06f95f8b6b">toString</a>(bool verbose) const</td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup</a></td><td class="entry"></td></tr>
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diff --git a/docs/html/structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html b/docs/html/structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html
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+<title>GridFire: gridfire::engine::MultiscalePartitioningEngineView::QSEGroup Struct Reference</title>
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+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::engine::MultiscalePartitioningEngineView::QSEGroup Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Struct representing a QSE group.  
+ <a href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#details">More...</a></p>
+<div class="dynheader">
+Collaboration diagram for gridfire::engine::MultiscalePartitioningEngineView::QSEGroup:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup__coll__graph.svg" width="230" height="271"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:ac9f99ea2754b419d030e92c314fba4ed" id="r_ac9f99ea2754b419d030e92c314fba4ed"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#ac9f99ea2754b419d030e92c314fba4ed">operator&lt;</a> (const <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">QSEGroup</a> &amp;other) const</td></tr>
+<tr class="memdesc:ac9f99ea2754b419d030e92c314fba4ed"><td class="mdescLeft">&#160;</td><td class="mdescRight">Less-than operator for <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html" title="Struct representing a QSE group.">QSEGroup</a>, used for sorting.  <br /></td></tr>
+<tr class="separator:ac9f99ea2754b419d030e92c314fba4ed"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:adc1710fde415de7a337dbec664b16e45"><td class="mdescLeft">&#160;</td><td class="mdescRight">Greater-than operator for <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html" title="Struct representing a QSE group.">QSEGroup</a>.  <br /></td></tr>
+<tr class="separator:adc1710fde415de7a337dbec664b16e45"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a846d372046454aa0ff97a4c83d85b96d"><td class="mdescLeft">&#160;</td><td class="mdescRight">Equality operator for <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html" title="Struct representing a QSE group.">QSEGroup</a>.  <br /></td></tr>
+<tr class="separator:a846d372046454aa0ff97a4c83d85b96d"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a5ec476b65fcedc5e4eb603a18037bf25"><td class="mdescLeft">&#160;</td><td class="mdescRight">Inequality operator for <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html" title="Struct representing a QSE group.">QSEGroup</a>.  <br /></td></tr>
+<tr class="separator:a5ec476b65fcedc5e4eb603a18037bf25"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:aa56ff69de9025ce559202c06f95f8b6b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a64018f4dd6c225b0790a0fd4065a0972"><td class="mdescLeft">&#160;</td><td class="mdescRight"><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">QSESolver</a> Member Functions ///.  <br /></td></tr>
+<tr class="separator:a64018f4dd6c225b0790a0fd4065a0972"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a553a39a2a8e6cea1d6f849cb7097fee6" id="r_a553a39a2a8e6cea1d6f849cb7097fee6"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a553a39a2a8e6cea1d6f849cb7097fee6">containsAlgebraic</a> (const fourdst::atomic::Species &amp;species) const</td></tr>
+<tr class="separator:a553a39a2a8e6cea1d6f849cb7097fee6"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:aa65229a4974b74ce4fc3f7c0544fbe91"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:a7f4715e3f2f2b6cc35a94f0f4105db30" id="r_a7f4715e3f2f2b6cc35a94f0f4105db30"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a7f4715e3f2f2b6cc35a94f0f4105db30">is_in_equilibrium</a> = false</td></tr>
+<tr class="memdesc:a7f4715e3f2f2b6cc35a94f0f4105db30"><td class="mdescLeft">&#160;</td><td class="mdescRight">Flag set by flux analysis.  <br /></td></tr>
+<tr class="separator:a7f4715e3f2f2b6cc35a94f0f4105db30"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4d706c8d2a49910135d7c599ce645a9e" id="r_a4d706c8d2a49910135d7c599ce645a9e"><td class="memItemLeft" align="right" valign="top">std::set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a4d706c8d2a49910135d7c599ce645a9e">algebraic_species</a></td></tr>
+<tr class="memdesc:a4d706c8d2a49910135d7c599ce645a9e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Algebraic species in this group.  <br /></td></tr>
+<tr class="separator:a4d706c8d2a49910135d7c599ce645a9e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9434050b990ecfa0459feebff3047ee2" id="r_a9434050b990ecfa0459feebff3047ee2"><td class="memItemLeft" align="right" valign="top">std::set&lt; fourdst::atomic::Species &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a9434050b990ecfa0459feebff3047ee2">seed_species</a></td></tr>
+<tr class="memdesc:a9434050b990ecfa0459feebff3047ee2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Dynamic species in this group.  <br /></td></tr>
+<tr class="separator:a9434050b990ecfa0459feebff3047ee2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abb89ee3a7eaaadba05b6e08a22f2e5d6" id="r_abb89ee3a7eaaadba05b6e08a22f2e5d6"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#abb89ee3a7eaaadba05b6e08a22f2e5d6">mean_timescale</a></td></tr>
+<tr class="memdesc:abb89ee3a7eaaadba05b6e08a22f2e5d6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mean timescale of the group.  <br /></td></tr>
+<tr class="separator:abb89ee3a7eaaadba05b6e08a22f2e5d6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="friends" name="friends"></a>
+Friends</h2></td></tr>
+<tr class="memitem:a37b41341696a780dbeee850919a56bf2" id="r_a37b41341696a780dbeee850919a56bf2"><td class="memItemLeft" align="right" valign="top">std::ostream &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html#a37b41341696a780dbeee850919a56bf2">operator&lt;&lt;</a> (std::ostream &amp;os, const <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">QSEGroup</a> &amp;group)</td></tr>
+<tr class="separator:a37b41341696a780dbeee850919a56bf2"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Struct representing a QSE group. </p>
+<dl class="section user"><dt>Purpose</dt><dd>A container to hold all information about a set of species that are potentially in quasi-steady-state equilibrium with each other. </dd></dl>
+</div><h2 class="groupheader">Member Function Documentation</h2>
+<a id="a64018f4dd6c225b0790a0fd4065a0972" name="a64018f4dd6c225b0790a0fd4065a0972"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a64018f4dd6c225b0790a0fd4065a0972">&#9670;&#160;</a></span>contains()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::MultiscalePartitioningEngineView::QSEGroup::contains </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p><a class="el" href="classgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSESolver.html">QSESolver</a> Member Functions ///. </p>
+
+</div>
+</div>
+<a id="a553a39a2a8e6cea1d6f849cb7097fee6" name="a553a39a2a8e6cea1d6f849cb7097fee6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a553a39a2a8e6cea1d6f849cb7097fee6">&#9670;&#160;</a></span>containsAlgebraic()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::MultiscalePartitioningEngineView::QSEGroup::containsAlgebraic </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="aa65229a4974b74ce4fc3f7c0544fbe91" name="aa65229a4974b74ce4fc3f7c0544fbe91"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa65229a4974b74ce4fc3f7c0544fbe91">&#9670;&#160;</a></span>containsSeed()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::MultiscalePartitioningEngineView::QSEGroup::containsSeed </td>
+          <td>(</td>
+          <td class="paramtype">const fourdst::atomic::Species &amp;&#160;</td>
+          <td class="paramname"><em>species</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a5ec476b65fcedc5e4eb603a18037bf25" name="a5ec476b65fcedc5e4eb603a18037bf25"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5ec476b65fcedc5e4eb603a18037bf25">&#9670;&#160;</a></span>operator!=()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::MultiscalePartitioningEngineView::QSEGroup::operator!= </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">QSEGroup</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Inequality operator for <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html" title="Struct representing a QSE group.">QSEGroup</a>. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>The other <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html" title="Struct representing a QSE group.">QSEGroup</a> to compare to. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the sets of species indices are not identical. </dd></dl>
+
+</div>
+</div>
+<a id="ac9f99ea2754b419d030e92c314fba4ed" name="ac9f99ea2754b419d030e92c314fba4ed"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac9f99ea2754b419d030e92c314fba4ed">&#9670;&#160;</a></span>operator&lt;()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::MultiscalePartitioningEngineView::QSEGroup::operator&lt; </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">QSEGroup</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Less-than operator for <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html" title="Struct representing a QSE group.">QSEGroup</a>, used for sorting. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>The other <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html" title="Struct representing a QSE group.">QSEGroup</a> to compare to. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if this group's mean timescale is less than the other's. </dd></dl>
+
+</div>
+</div>
+<a id="a846d372046454aa0ff97a4c83d85b96d" name="a846d372046454aa0ff97a4c83d85b96d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a846d372046454aa0ff97a4c83d85b96d">&#9670;&#160;</a></span>operator==()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::MultiscalePartitioningEngineView::QSEGroup::operator== </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">QSEGroup</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Equality operator for <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html" title="Struct representing a QSE group.">QSEGroup</a>. </p>
+<p><a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html" title="Struct representing a QSE group.">QSEGroup</a> Member Functions ///.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>The other <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html" title="Struct representing a QSE group.">QSEGroup</a> to compare to. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if the sets of species indices are identical. </dd></dl>
+
+</div>
+</div>
+<a id="adc1710fde415de7a337dbec664b16e45" name="adc1710fde415de7a337dbec664b16e45"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adc1710fde415de7a337dbec664b16e45">&#9670;&#160;</a></span>operator&gt;()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::MultiscalePartitioningEngineView::QSEGroup::operator&gt; </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">QSEGroup</a> &amp;&#160;</td>
+          <td class="paramname"><em>other</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Greater-than operator for <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html" title="Struct representing a QSE group.">QSEGroup</a>. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">other</td><td>The other <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html" title="Struct representing a QSE group.">QSEGroup</a> to compare to. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>True if this group's mean timescale is greater than the other's. </dd></dl>
+
+</div>
+</div>
+<a id="aa56ff69de9025ce559202c06f95f8b6b" name="aa56ff69de9025ce559202c06f95f8b6b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa56ff69de9025ce559202c06f95f8b6b">&#9670;&#160;</a></span>toString()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::string gridfire::engine::MultiscalePartitioningEngineView::QSEGroup::toString </td>
+          <td>(</td>
+          <td class="paramtype">bool&#160;</td>
+          <td class="paramname"><em>verbose</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Friends And Related Symbol Documentation</h2>
+<a id="a37b41341696a780dbeee850919a56bf2" name="a37b41341696a780dbeee850919a56bf2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a37b41341696a780dbeee850919a56bf2">&#9670;&#160;</a></span>operator&lt;&lt;</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::ostream &amp; operator&lt;&lt; </td>
+          <td>(</td>
+          <td class="paramtype">std::ostream &amp;&#160;</td>
+          <td class="paramname"><em>os</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1engine_1_1MultiscalePartitioningEngineView_1_1QSEGroup.html">QSEGroup</a> &amp;&#160;</td>
+          <td class="paramname"><em>group</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">friend</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a4d706c8d2a49910135d7c599ce645a9e" name="a4d706c8d2a49910135d7c599ce645a9e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4d706c8d2a49910135d7c599ce645a9e">&#9670;&#160;</a></span>algebraic_species</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::set&lt;fourdst::atomic::Species&gt; gridfire::engine::MultiscalePartitioningEngineView::QSEGroup::algebraic_species</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Algebraic species in this group. </p>
+
+</div>
+</div>
+<a id="a7f4715e3f2f2b6cc35a94f0f4105db30" name="a7f4715e3f2f2b6cc35a94f0f4105db30"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a7f4715e3f2f2b6cc35a94f0f4105db30">&#9670;&#160;</a></span>is_in_equilibrium</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">bool gridfire::engine::MultiscalePartitioningEngineView::QSEGroup::is_in_equilibrium = false</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Flag set by flux analysis. </p>
+
+</div>
+</div>
+<a id="abb89ee3a7eaaadba05b6e08a22f2e5d6" name="abb89ee3a7eaaadba05b6e08a22f2e5d6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abb89ee3a7eaaadba05b6e08a22f2e5d6">&#9670;&#160;</a></span>mean_timescale</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::engine::MultiscalePartitioningEngineView::QSEGroup::mean_timescale</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Mean timescale of the group. </p>
+
+</div>
+</div>
+<a id="a9434050b990ecfa0459feebff3047ee2" name="a9434050b990ecfa0459feebff3047ee2"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9434050b990ecfa0459feebff3047ee2">&#9670;&#160;</a></span>seed_species</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
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+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/engine/views/<a class="el" href="engine__multiscale_8h.html">engine_multiscale.h</a></li>
+</ul>
+</div><!-- contents -->
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+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="structgridfire_1_1engine_1_1PrimingReport-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::engine::PrimingReport Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Captures the result of a network priming operation.  
+ <a href="structgridfire_1_1engine_1_1PrimingReport.html#details">More...</a></p>
+
+<p><code>#include &lt;reporting.h&gt;</code></p>
+<div class="dynheader">
+Collaboration diagram for gridfire::engine::PrimingReport:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="structgridfire_1_1engine_1_1PrimingReport__coll__graph.svg" width="234" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
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+<tr class="separator:a73acbf3cbec59f5516e4c7aa3f6ca150"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:ac3e0c141e56c7bc41dd89d5fc873fa41"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:ac6c3112c984203fd5a672006be421736"><td class="mdescLeft">&#160;</td><td class="mdescRight">Serialize the report to a stream.  <br /></td></tr>
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+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Captures the result of a network priming operation. </p>
+<p>Contains the finalized composition, the changes in mass fractions for species, a success flag, and a detailed status code.</p>
+<dl class="section pre"><dt>Precondition</dt><dd>A priming algorithm must be executed before constructing a valid report. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>All fields reflect the outcome of the priming run. </dd></dl>
+</div><h2 class="groupheader">Friends And Related Symbol Documentation</h2>
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+          <td class="paramname"><em>os</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1engine_1_1PrimingReport.html">PrimingReport</a> &amp;&#160;</td>
+          <td class="paramname"><em>report</em>&#160;</td>
+        </tr>
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+<p>Serialize the report to a stream. </p>
+<p>Formats the success flag and status string into the output stream. </p><dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">os</td><td>Output stream to write to. </td></tr>
+    <tr><td class="paramname">report</td><td>Report to serialize. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>Reference to the modified output stream. </dd></dl>
+<dl class="section post"><dt>Postcondition</dt><dd>The stream contains a textual representation of the report. </dd></dl>
+
+</div>
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+
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+<p>Detailed status code indicating the result. </p>
+
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+          <td class="memname">bool gridfire::engine::PrimingReport::success</td>
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+<p>True if priming completed without error. </p>
+
+</div>
+</div>
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+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">gridfire::engine::StepDerivatives&lt; T &gt;</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html#aad90bec88a31fce600c60c29835410b1">dydt</a></td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">gridfire::engine::StepDerivatives&lt; T &gt;</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html#a5e1ac820ff9682d74474c31b235b2848">neutrinoEnergyLossRate</a></td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">gridfire::engine::StepDerivatives&lt; T &gt;</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html#ab00be76673548db59c4097f19dc8be93">nuclearEnergyGenerationRate</a></td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">gridfire::engine::StepDerivatives&lt; T &gt;</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html#ac269799f25d23045bf60dd27376d4337">reactionContributions</a></td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">gridfire::engine::StepDerivatives&lt; T &gt;</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html#ab6f82eeaf31cdb66fb40267838b19a34">StepDerivatives</a>()</td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">gridfire::engine::StepDerivatives&lt; T &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html#a97a3fe3cf9178044bcb57e371063a820">totalNeutrinoFlux</a></td><td class="entry"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">gridfire::engine::StepDerivatives&lt; T &gt;</a></td><td class="entry"></td></tr>
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+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1engine_1_1StepDerivatives-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::engine::StepDerivatives&lt; T &gt; Struct Template Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Structure holding derivatives and energy generation for a network step.  
+ <a href="structgridfire_1_1engine_1_1StepDerivatives.html#details">More...</a></p>
+
+<p><code>#include &lt;engine_abstract.h&gt;</code></p>
+<div class="dynheader">
+Collaboration diagram for gridfire::engine::StepDerivatives&lt; T &gt;:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="structgridfire_1_1engine_1_1StepDerivatives__coll__graph.svg" width="100%" height="456"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:ab6f82eeaf31cdb66fb40267838b19a34" id="r_ab6f82eeaf31cdb66fb40267838b19a34"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html#ab6f82eeaf31cdb66fb40267838b19a34">StepDerivatives</a> ()</td></tr>
+<tr class="separator:ab6f82eeaf31cdb66fb40267838b19a34"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:aad90bec88a31fce600c60c29835410b1" id="r_aad90bec88a31fce600c60c29835410b1"><td class="memItemLeft" align="right" valign="top">std::map&lt; fourdst::atomic::Species, T &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html#aad90bec88a31fce600c60c29835410b1">dydt</a> {}</td></tr>
+<tr class="memdesc:aad90bec88a31fce600c60c29835410b1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Derivatives of abundances (dY/dt for each species).  <br /></td></tr>
+<tr class="separator:aad90bec88a31fce600c60c29835410b1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab00be76673548db59c4097f19dc8be93" id="r_ab00be76673548db59c4097f19dc8be93"><td class="memItemLeft" align="right" valign="top">T&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html#ab00be76673548db59c4097f19dc8be93">nuclearEnergyGenerationRate</a> = T(0.0)</td></tr>
+<tr class="memdesc:ab00be76673548db59c4097f19dc8be93"><td class="mdescLeft">&#160;</td><td class="mdescRight">Specific energy generation rate (e.g., erg/g/s).  <br /></td></tr>
+<tr class="separator:ab00be76673548db59c4097f19dc8be93"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac269799f25d23045bf60dd27376d4337" id="r_ac269799f25d23045bf60dd27376d4337"><td class="memItemLeft" align="right" valign="top">std::map&lt; fourdst::atomic::Species, std::unordered_map&lt; std::string, T &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html#ac269799f25d23045bf60dd27376d4337">reactionContributions</a> {}</td></tr>
+<tr class="separator:ac269799f25d23045bf60dd27376d4337"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5e1ac820ff9682d74474c31b235b2848" id="r_a5e1ac820ff9682d74474c31b235b2848"><td class="memItemLeft" align="right" valign="top">T&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html#a5e1ac820ff9682d74474c31b235b2848">neutrinoEnergyLossRate</a> = T(0.0)</td></tr>
+<tr class="separator:a5e1ac820ff9682d74474c31b235b2848"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a97a3fe3cf9178044bcb57e371063a820" id="r_a97a3fe3cf9178044bcb57e371063a820"><td class="memItemLeft" align="right" valign="top">T&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html#a97a3fe3cf9178044bcb57e371063a820">totalNeutrinoFlux</a> = T(0.0)</td></tr>
+<tr class="separator:a97a3fe3cf9178044bcb57e371063a820"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><div class="compoundTemplParams">template&lt;IsArithmeticOrAD T&gt;<br />
+struct gridfire::engine::StepDerivatives&lt; T &gt;</div><p>Structure holding derivatives and energy generation for a network step. </p>
+<dl class="tparams"><dt>Template Parameters</dt><dd>
+  <table class="tparams">
+    <tr><td class="paramname">T</td><td>Numeric type (double or CppAD::AD&lt;double&gt;).</td></tr>
+  </table>
+  </dd>
+</dl>
+<p>This struct is used to return both the time derivatives of all species abundances and the specific nuclear energy generation rate for a single network evaluation.</p>
+<p>Example usage: </p><div class="fragment"><div class="line"><a class="code hl_struct" href="structgridfire_1_1engine_1_1StepDerivatives.html">StepDerivatives&lt;double&gt;</a> result = engine.calculateRHSAndEnergy(Y, T9, rho);</div>
+<div class="line"><span class="keywordflow">for</span> (<span class="keywordtype">double</span> dydt_i : result.<a class="code hl_variable" href="structgridfire_1_1engine_1_1StepDerivatives.html#aad90bec88a31fce600c60c29835410b1">dydt</a>) {</div>
+<div class="line">    <span class="comment">// Use derivative</span></div>
+<div class="line">}</div>
+<div class="line"><span class="keywordtype">double</span> energyRate = result.<a class="code hl_variable" href="structgridfire_1_1engine_1_1StepDerivatives.html#ab00be76673548db59c4097f19dc8be93">nuclearEnergyGenerationRate</a>;</div>
+<div class="ttc" id="astructgridfire_1_1engine_1_1StepDerivatives_html"><div class="ttname"><a href="structgridfire_1_1engine_1_1StepDerivatives.html">gridfire::engine::StepDerivatives</a></div><div class="ttdoc">Structure holding derivatives and energy generation for a network step.</div><div class="ttdef"><b>Definition</b> engine_abstract.h:53</div></div>
+<div class="ttc" id="astructgridfire_1_1engine_1_1StepDerivatives_html_aad90bec88a31fce600c60c29835410b1"><div class="ttname"><a href="structgridfire_1_1engine_1_1StepDerivatives.html#aad90bec88a31fce600c60c29835410b1">gridfire::engine::StepDerivatives::dydt</a></div><div class="ttdeci">std::map&lt; fourdst::atomic::Species, T &gt; dydt</div><div class="ttdoc">Derivatives of abundances (dY/dt for each species).</div><div class="ttdef"><b>Definition</b> engine_abstract.h:54</div></div>
+<div class="ttc" id="astructgridfire_1_1engine_1_1StepDerivatives_html_ab00be76673548db59c4097f19dc8be93"><div class="ttname"><a href="structgridfire_1_1engine_1_1StepDerivatives.html#ab00be76673548db59c4097f19dc8be93">gridfire::engine::StepDerivatives::nuclearEnergyGenerationRate</a></div><div class="ttdeci">T nuclearEnergyGenerationRate</div><div class="ttdoc">Specific energy generation rate (e.g., erg/g/s).</div><div class="ttdef"><b>Definition</b> engine_abstract.h:55</div></div>
+</div><!-- fragment --> </div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="ab6f82eeaf31cdb66fb40267838b19a34" name="ab6f82eeaf31cdb66fb40267838b19a34"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab6f82eeaf31cdb66fb40267838b19a34">&#9670;&#160;</a></span>StepDerivatives()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<div class="memtemplate">
+template&lt;IsArithmeticOrAD T&gt; </div>
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="structgridfire_1_1engine_1_1StepDerivatives.html">gridfire::engine::StepDerivatives</a>&lt; T &gt;::StepDerivatives </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
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+<div class="header">
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+  <div class="headertitle"><div class="title">gridfire::partition::RauscherThielemannPartitionFunction::InterpolationPoints Struct Reference</div></div>
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+<div class="contents">
+<table class="memberdecls">
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+<tr class="memdesc:a48e170f77812fdbc06cff18267b241ca"><td class="mdescLeft">&#160;</td><td class="mdescRight">Lower temperature bound.  <br /></td></tr>
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+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1partition_1_1RauscherThielemannPartitionFunction_1_1IsotopeData.html">gridfire::partition::RauscherThielemannPartitionFunction::IsotopeData</a>, including all inherited members.</p>
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::partition::record::RauscherThielemannPartitionDataRecord Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html">gridfire::partition::record::RauscherThielemannPartitionDataRecord</a>, including all inherited members.</p>
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+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html#acf5c38826050594aee98d746d0ba40b2">ground_state_spin</a></td><td class="entry"><a class="el" href="structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html">gridfire::partition::record::RauscherThielemannPartitionDataRecord</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html#a64c1cef58c1bdeab1fcc7f9a30a71609">normalized_g_values</a></td><td class="entry"><a class="el" href="structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html">gridfire::partition::record::RauscherThielemannPartitionDataRecord</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html#abb1416e2d8d4d27264c9eece547006b6">z</a></td><td class="entry"><a class="el" href="structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html">gridfire::partition::record::RauscherThielemannPartitionDataRecord</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
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diff --git a/docs/html/structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html b/docs/html/structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html
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+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::partition::record::RauscherThielemannPartitionDataRecord Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Packed binary record of Rauscher-Thielemann partition function data for an isotope.  
+ <a href="structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html#details">More...</a></p>
+
+<p><code>#include &lt;rauscher_thielemann_partition_data_record.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:abb1416e2d8d4d27264c9eece547006b6" id="r_abb1416e2d8d4d27264c9eece547006b6"><td class="memItemLeft" align="right" valign="top">uint32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html#abb1416e2d8d4d27264c9eece547006b6">z</a></td></tr>
+<tr class="memdesc:abb1416e2d8d4d27264c9eece547006b6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Atomic number.  <br /></td></tr>
+<tr class="separator:abb1416e2d8d4d27264c9eece547006b6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a677505655a1c6922dfa9b32b70d7e815" id="r_a677505655a1c6922dfa9b32b70d7e815"><td class="memItemLeft" align="right" valign="top">uint32_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html#a677505655a1c6922dfa9b32b70d7e815">a</a></td></tr>
+<tr class="memdesc:a677505655a1c6922dfa9b32b70d7e815"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mass number.  <br /></td></tr>
+<tr class="separator:a677505655a1c6922dfa9b32b70d7e815"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:acf5c38826050594aee98d746d0ba40b2" id="r_acf5c38826050594aee98d746d0ba40b2"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1partition_1_1record_1_1RauscherThielemannPartitionDataRecord.html#acf5c38826050594aee98d746d0ba40b2">ground_state_spin</a></td></tr>
+<tr class="memdesc:acf5c38826050594aee98d746d0ba40b2"><td class="mdescLeft">&#160;</td><td class="mdescRight">Ground state spin.  <br /></td></tr>
+<tr class="separator:acf5c38826050594aee98d746d0ba40b2"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a64c1cef58c1bdeab1fcc7f9a30a71609"><td class="mdescLeft">&#160;</td><td class="mdescRight">Normalized g-values for the first 24 energy levels.  <br /></td></tr>
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+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Packed binary record of Rauscher-Thielemann partition function data for an isotope. </p>
+<p>Each record stores the atomic number (Z), mass number (A), ground state spin J, and an array of 24 normalized G-values corresponding to fixed temperature grid points. This struct is read directly from embedded binary data and must remain tightly packed.</p>
+<dl class="section note"><dt>Note</dt><dd>Alignment is set to 1 byte to match the binary layout. </dd></dl>
+</div><h2 class="groupheader">Member Data Documentation</h2>
+<a id="a677505655a1c6922dfa9b32b70d7e815" name="a677505655a1c6922dfa9b32b70d7e815"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a677505655a1c6922dfa9b32b70d7e815">&#9670;&#160;</a></span>a</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
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+          <td class="memname">uint32_t gridfire::partition::record::RauscherThielemannPartitionDataRecord::a</td>
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+      </table>
+</div><div class="memdoc">
+
+<p>Mass number. </p>
+
+</div>
+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#acf5c38826050594aee98d746d0ba40b2">&#9670;&#160;</a></span>ground_state_spin</h2>
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+
+<p>Ground state spin. </p>
+
+</div>
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+</div><div class="memdoc">
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+<p>Normalized g-values for the first 24 energy levels. </p>
+
+</div>
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+<a id="abb1416e2d8d4d27264c9eece547006b6" name="abb1416e2d8d4d27264c9eece547006b6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abb1416e2d8d4d27264c9eece547006b6">&#9670;&#160;</a></span>z</h2>
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+</div><div class="memdoc">
+
+<p>Atomic number. </p>
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::policy::TemperatureDependentChainPolicy::ActiveTempRange Member List</div></div>
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+<title>GridFire: gridfire::policy::TemperatureDependentChainPolicy::ActiveTempRange Struct Reference</title>
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+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1policy_1_1TemperatureDependentChainPolicy_1_1ActiveTempRange-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::policy::TemperatureDependentChainPolicy::ActiveTempRange Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Struct to hold the active temperature range for the reaction chain.  
+ <a href="structgridfire_1_1policy_1_1TemperatureDependentChainPolicy_1_1ActiveTempRange.html#details">More...</a></p>
+
+<p><code>#include &lt;chains.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:af7e3aa5b84fc1310fa528a7dac3ae72f" id="r_af7e3aa5b84fc1310fa528a7dac3ae72f"><td class="memItemLeft" align="right" valign="top">std::optional&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1policy_1_1TemperatureDependentChainPolicy_1_1ActiveTempRange.html#af7e3aa5b84fc1310fa528a7dac3ae72f">minT9</a></td></tr>
+<tr class="memdesc:af7e3aa5b84fc1310fa528a7dac3ae72f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimum temperature (in T9) for which the chain is active.  <br /></td></tr>
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+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Struct to hold the active temperature range for the reaction chain. </p>
+</div><h2 class="groupheader">Member Data Documentation</h2>
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+<p>Maximum temperature (in T9) for which the chain is active. </p>
+
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+<p>Minimum temperature (in T9) for which the chain is active. </p>
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/policy/<a class="el" href="chains_8h.html">chains.h</a></li>
+</ul>
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+</div>
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+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1rates_1_1weak_1_1BoundsErrorInfo-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::BoundsErrorInfo Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Detailed bounds information for a BOUNDS_ERROR.  
+ <a href="structgridfire_1_1rates_1_1weak_1_1BoundsErrorInfo.html#details">More...</a></p>
+
+<p><code>#include &lt;weak_types.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:afb2af3df6ec5ea439b5ea55571975391" id="r_afb2af3df6ec5ea439b5ea55571975391"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">TableAxes</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1BoundsErrorInfo.html#afb2af3df6ec5ea439b5ea55571975391">axis</a></td></tr>
+<tr class="memdesc:afb2af3df6ec5ea439b5ea55571975391"><td class="mdescLeft">&#160;</td><td class="mdescRight">Axis on which the error occurred.  <br /></td></tr>
+<tr class="separator:afb2af3df6ec5ea439b5ea55571975391"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a07dfb669f73b029a71eb59cbbed69f42" id="r_a07dfb669f73b029a71eb59cbbed69f42"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1BoundsErrorInfo.html#a07dfb669f73b029a71eb59cbbed69f42">axisMinValue</a></td></tr>
+<tr class="memdesc:a07dfb669f73b029a71eb59cbbed69f42"><td class="mdescLeft">&#160;</td><td class="mdescRight">Minimum tabulated value on the axis.  <br /></td></tr>
+<tr class="separator:a07dfb669f73b029a71eb59cbbed69f42"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6371b8f8c45a9b069b19dd968ff81b28" id="r_a6371b8f8c45a9b069b19dd968ff81b28"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1BoundsErrorInfo.html#a6371b8f8c45a9b069b19dd968ff81b28">axisMaxValue</a></td></tr>
+<tr class="memdesc:a6371b8f8c45a9b069b19dd968ff81b28"><td class="mdescLeft">&#160;</td><td class="mdescRight">Maximum tabulated value on the axis.  <br /></td></tr>
+<tr class="separator:a6371b8f8c45a9b069b19dd968ff81b28"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a3eb0be2063f7333994a026a569ae5568" id="r_a3eb0be2063f7333994a026a569ae5568"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1BoundsErrorInfo.html#a3eb0be2063f7333994a026a569ae5568">queryValue</a></td></tr>
+<tr class="memdesc:a3eb0be2063f7333994a026a569ae5568"><td class="mdescLeft">&#160;</td><td class="mdescRight">Requested value.  <br /></td></tr>
+<tr class="separator:a3eb0be2063f7333994a026a569ae5568"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Detailed bounds information for a BOUNDS_ERROR. </p>
+</div><h2 class="groupheader">Member Data Documentation</h2>
+<a id="afb2af3df6ec5ea439b5ea55571975391" name="afb2af3df6ec5ea439b5ea55571975391"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afb2af3df6ec5ea439b5ea55571975391">&#9670;&#160;</a></span>axis</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">TableAxes</a> gridfire::rates::weak::BoundsErrorInfo::axis</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Axis on which the error occurred. </p>
+
+</div>
+</div>
+<a id="a6371b8f8c45a9b069b19dd968ff81b28" name="a6371b8f8c45a9b069b19dd968ff81b28"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6371b8f8c45a9b069b19dd968ff81b28">&#9670;&#160;</a></span>axisMaxValue</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::BoundsErrorInfo::axisMaxValue</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Maximum tabulated value on the axis. </p>
+
+</div>
+</div>
+<a id="a07dfb669f73b029a71eb59cbbed69f42" name="a07dfb669f73b029a71eb59cbbed69f42"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a07dfb669f73b029a71eb59cbbed69f42">&#9670;&#160;</a></span>axisMinValue</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::BoundsErrorInfo::axisMinValue</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Minimum tabulated value on the axis. </p>
+
+</div>
+</div>
+<a id="a3eb0be2063f7333994a026a569ae5568" name="a3eb0be2063f7333994a026a569ae5568"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3eb0be2063f7333994a026a569ae5568">&#9670;&#160;</a></span>queryValue</h2>
+
+<div class="memitem">
+<div class="memproto">
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+          <td class="memname">double gridfire::rates::weak::BoundsErrorInfo::queryValue</td>
+        </tr>
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+
+<p>Requested value. </p>
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak__types_8h.html">weak_types.h</a></li>
+</ul>
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+  </ul>
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+    [ "axisMaxValue", "structgridfire_1_1rates_1_1weak_1_1BoundsErrorInfo.html#a6371b8f8c45a9b069b19dd968ff81b28", null ],
+    [ "axisMinValue", "structgridfire_1_1rates_1_1weak_1_1BoundsErrorInfo.html#a07dfb669f73b029a71eb59cbbed69f42", null ],
+    [ "queryValue", "structgridfire_1_1rates_1_1weak_1_1BoundsErrorInfo.html#a3eb0be2063f7333994a026a569ae5568", null ]
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+</div>
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::rates::weak::InterpolationError Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1rates_1_1weak_1_1InterpolationError.html">gridfire::rates::weak::InterpolationError</a>, including all inherited members.</p>
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+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1InterpolationError.html#a086720ca534bc4c63d9341995e2f87bd">type</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1InterpolationError.html">gridfire::rates::weak::InterpolationError</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
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+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1InterpolationError.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1InterpolationError.html
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+<title>GridFire: gridfire::rates::weak::InterpolationError Struct Reference</title>
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+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div id="MSearchResults">
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+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1rates_1_1weak_1_1InterpolationError-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::InterpolationError Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Interpolation error with optional per-axis bounds details.  
+ <a href="structgridfire_1_1rates_1_1weak_1_1InterpolationError.html#details">More...</a></p>
+
+<p><code>#include &lt;weak_types.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
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+<tr class="separator:a1541a5280bd1b3f90bc62d7c0e1f80a1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Interpolation error with optional per-axis bounds details. </p>
+<p>For BOUNDS_ERROR, boundsErrorInfo may contain an entry per offending axis. </p>
+</div><h2 class="groupheader">Member Data Documentation</h2>
+<a id="a1541a5280bd1b3f90bc62d7c0e1f80a1" name="a1541a5280bd1b3f90bc62d7c0e1f80a1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a1541a5280bd1b3f90bc62d7c0e1f80a1">&#9670;&#160;</a></span>boundsErrorInfo</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::optional&lt;std::unordered_map&lt;<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">TableAxes</a>, <a class="el" href="structgridfire_1_1rates_1_1weak_1_1BoundsErrorInfo.html">BoundsErrorInfo</a>&gt; &gt; gridfire::rates::weak::InterpolationError::boundsErrorInfo = std::nullopt</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a086720ca534bc4c63d9341995e2f87bd" name="a086720ca534bc4c63d9341995e2f87bd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a086720ca534bc4c63d9341995e2f87bd">&#9670;&#160;</a></span>type</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a3fc4243d5c894779b986110c3a1ee1d4">InterpolationErrorType</a> gridfire::rates::weak::InterpolationError::type</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Error category. </p>
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak__types_8h.html">weak_types.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates.html">rates</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">weak</a></li><li class="navelem"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1InterpolationError.html">InterpolationError</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
+</div>
+</body>
+</html>
diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1InterpolationError.js b/docs/html/structgridfire_1_1rates_1_1weak_1_1InterpolationError.js
new file mode 100644
index 00000000..d33e2abd
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1InterpolationError.js
@@ -0,0 +1,5 @@
+var structgridfire_1_1rates_1_1weak_1_1InterpolationError =
+[
+    [ "boundsErrorInfo", "structgridfire_1_1rates_1_1weak_1_1InterpolationError.html#a1541a5280bd1b3f90bc62d7c0e1f80a1", null ],
+    [ "type", "structgridfire_1_1rates_1_1weak_1_1InterpolationError.html#a086720ca534bc4c63d9341995e2f87bd", null ]
+];
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::rates::weak::IsotopeGrid Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html">gridfire::rates::weak::IsotopeGrid</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html#ad0df5ef84e3a78d881838a3bb014db83">data</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html">gridfire::rates::weak::IsotopeGrid</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html#a30362f5bb497ae74cf6a10fd701273a0">rhoYe_axis</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html">gridfire::rates::weak::IsotopeGrid</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html#a99da523669d85aa0a628d35a077d541c">t9_axis</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html">gridfire::rates::weak::IsotopeGrid</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html
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+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: gridfire::rates::weak::IsotopeGrid Struct Reference</title>
+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
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+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
+ <tbody>
+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
+ </tr>
+ </tbody>
+</table>
+</div>
+<!-- end header part -->
+<!-- Generated by Doxygen 1.9.8 -->
+<script type="text/javascript">
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+<script type="text/javascript">
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+<div id="side-nav" class="ui-resizable side-nav-resizable">
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+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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+</script>
+<div id="doc-content">
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+<div id="MSearchSelectWindow"
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+<div id="SRIndex">
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+<div class="SRStatus" id="Loading">Loading...</div>
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+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::IsotopeGrid Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Regular 2D grid and payloads for a single isotope (A,Z).  
+ <a href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html#details">More...</a></p>
+
+<p><code>#include &lt;weak_types.h&gt;</code></p>
+<div class="dynheader">
+Collaboration diagram for gridfire::rates::weak::IsotopeGrid:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid__coll__graph.svg" width="448" height="271"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:a99da523669d85aa0a628d35a077d541c" id="r_a99da523669d85aa0a628d35a077d541c"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html#a99da523669d85aa0a628d35a077d541c">t9_axis</a></td></tr>
+<tr class="memdesc:a99da523669d85aa0a628d35a077d541c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Unique sorted T9 grid.  <br /></td></tr>
+<tr class="separator:a99da523669d85aa0a628d35a077d541c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a30362f5bb497ae74cf6a10fd701273a0" id="r_a30362f5bb497ae74cf6a10fd701273a0"><td class="memItemLeft" align="right" valign="top">std::vector&lt; double &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html#a30362f5bb497ae74cf6a10fd701273a0">rhoYe_axis</a></td></tr>
+<tr class="memdesc:a30362f5bb497ae74cf6a10fd701273a0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Unique sorted log10(rho*Ye) grid.  <br /></td></tr>
+<tr class="separator:a30362f5bb497ae74cf6a10fd701273a0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad0df5ef84e3a78d881838a3bb014db83" id="r_ad0df5ef84e3a78d881838a3bb014db83"><td class="memItemLeft" align="right" valign="top">std::vector&lt; <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html">WeakRatePayload</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html#ad0df5ef84e3a78d881838a3bb014db83">data</a></td></tr>
+<tr class="memdesc:ad0df5ef84e3a78d881838a3bb014db83"><td class="mdescLeft">&#160;</td><td class="mdescRight">MuE axis for each (T9, log_rhoYe) pair (the table is ragged in mu_e). This is also where the payloads are stored.  <br /></td></tr>
+<tr class="separator:ad0df5ef84e3a78d881838a3bb014db83"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Regular 2D grid and payloads for a single isotope (A,Z). </p>
+<p>Axes are monotonically increasing per dimension. Data vector is laid out in row-major order with index computed as:</p>
+<p>index = i_t9 * N_rhoYe + j_rhoYe </p>
+</div><h2 class="groupheader">Member Data Documentation</h2>
+<a id="ad0df5ef84e3a78d881838a3bb014db83" name="ad0df5ef84e3a78d881838a3bb014db83"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad0df5ef84e3a78d881838a3bb014db83">&#9670;&#160;</a></span>data</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;<a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html">WeakRatePayload</a>&gt; gridfire::rates::weak::IsotopeGrid::data</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>MuE axis for each (T9, log_rhoYe) pair (the table is ragged in mu_e). This is also where the payloads are stored. </p>
+
+</div>
+</div>
+<a id="a30362f5bb497ae74cf6a10fd701273a0" name="a30362f5bb497ae74cf6a10fd701273a0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a30362f5bb497ae74cf6a10fd701273a0">&#9670;&#160;</a></span>rhoYe_axis</h2>
+
+<div class="memitem">
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+          <td class="memname">std::vector&lt;double&gt; gridfire::rates::weak::IsotopeGrid::rhoYe_axis</td>
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+      </table>
+</div><div class="memdoc">
+
+<p>Unique sorted log10(rho*Ye) grid. </p>
+
+</div>
+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#a99da523669d85aa0a628d35a077d541c">&#9670;&#160;</a></span>t9_axis</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt;double&gt; gridfire::rates::weak::IsotopeGrid::t9_axis</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Unique sorted T9 grid. </p>
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak__types_8h.html">weak_types.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates.html">rates</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html">weak</a></li><li class="navelem"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1IsotopeGrid.html">IsotopeGrid</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#ac08d42071950006ccf3c438253ef9ee9">mu_e</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html">gridfire::rates::weak::RateDataRow</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#a2344c046a615bc6ff07327d6bcfe074b">t9</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html">gridfire::rates::weak::RateDataRow</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#a318b62e183dcb49c04260832454fa721">Z</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html">gridfire::rates::weak::RateDataRow</a></td><td class="entry"></td></tr>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1rates_1_1weak_1_1RateDataRow-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::RateDataRow Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>One row of the unified weak-rate data table for a specific isotope and state.  
+ <a href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#details">More...</a></p>
+
+<p><code>#include &lt;weak_types.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:aee9ee73218397780a2a7708c29779c73" id="r_aee9ee73218397780a2a7708c29779c73"><td class="memItemLeft" align="right" valign="top">uint16_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#aee9ee73218397780a2a7708c29779c73">A</a></td></tr>
+<tr class="memdesc:aee9ee73218397780a2a7708c29779c73"><td class="mdescLeft">&#160;</td><td class="mdescRight">Mass number.  <br /></td></tr>
+<tr class="separator:aee9ee73218397780a2a7708c29779c73"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a318b62e183dcb49c04260832454fa721"><td class="mdescLeft">&#160;</td><td class="mdescRight">Proton number.  <br /></td></tr>
+<tr class="separator:a318b62e183dcb49c04260832454fa721"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2344c046a615bc6ff07327d6bcfe074b" id="r_a2344c046a615bc6ff07327d6bcfe074b"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#a2344c046a615bc6ff07327d6bcfe074b">t9</a></td></tr>
+<tr class="memdesc:a2344c046a615bc6ff07327d6bcfe074b"><td class="mdescLeft">&#160;</td><td class="mdescRight">Temperature in GK.  <br /></td></tr>
+<tr class="separator:a2344c046a615bc6ff07327d6bcfe074b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ad7908a8b8a1db5014f23a7b3855156b0" id="r_ad7908a8b8a1db5014f23a7b3855156b0"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#ad7908a8b8a1db5014f23a7b3855156b0">log_rhoye</a></td></tr>
+<tr class="memdesc:ad7908a8b8a1db5014f23a7b3855156b0"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(rho*Ye) (cgs density times electron fraction).  <br /></td></tr>
+<tr class="separator:ad7908a8b8a1db5014f23a7b3855156b0"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ac08d42071950006ccf3c438253ef9ee9" id="r_ac08d42071950006ccf3c438253ef9ee9"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#ac08d42071950006ccf3c438253ef9ee9">mu_e</a></td></tr>
+<tr class="memdesc:ac08d42071950006ccf3c438253ef9ee9"><td class="mdescLeft">&#160;</td><td class="mdescRight">Electron chemical potential (MeV).  <br /></td></tr>
+<tr class="separator:ac08d42071950006ccf3c438253ef9ee9"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a359555f2b05e4b30bf810e12456df43b" id="r_a359555f2b05e4b30bf810e12456df43b"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#a359555f2b05e4b30bf810e12456df43b">log_beta_plus</a></td></tr>
+<tr class="memdesc:a359555f2b05e4b30bf810e12456df43b"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(β+ decay rate).  <br /></td></tr>
+<tr class="separator:a359555f2b05e4b30bf810e12456df43b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a075a70baa4ac5859fb01d493e08debdd" id="r_a075a70baa4ac5859fb01d493e08debdd"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#a075a70baa4ac5859fb01d493e08debdd">log_electron_capture</a></td></tr>
+<tr class="memdesc:a075a70baa4ac5859fb01d493e08debdd"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(e− capture rate).  <br /></td></tr>
+<tr class="separator:a075a70baa4ac5859fb01d493e08debdd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:abd2d7fc00f582316eae824ccafef9b4b" id="r_abd2d7fc00f582316eae824ccafef9b4b"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#abd2d7fc00f582316eae824ccafef9b4b">log_neutrino_loss_ec</a></td></tr>
+<tr class="memdesc:abd2d7fc00f582316eae824ccafef9b4b"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(neutrino loss for β+ and e− capture).  <br /></td></tr>
+<tr class="separator:abd2d7fc00f582316eae824ccafef9b4b"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ab41dace2493e036460736d8124a3475c" id="r_ab41dace2493e036460736d8124a3475c"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#ab41dace2493e036460736d8124a3475c">log_beta_minus</a></td></tr>
+<tr class="memdesc:ab41dace2493e036460736d8124a3475c"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(β− decay rate).  <br /></td></tr>
+<tr class="separator:ab41dace2493e036460736d8124a3475c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afc3f5d3e5c3ec52134619fd462922f85" id="r_afc3f5d3e5c3ec52134619fd462922f85"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#afc3f5d3e5c3ec52134619fd462922f85">log_positron_capture</a></td></tr>
+<tr class="memdesc:afc3f5d3e5c3ec52134619fd462922f85"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(e+ capture rate).  <br /></td></tr>
+<tr class="separator:afc3f5d3e5c3ec52134619fd462922f85"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9d4db2970fc7f525824f6666198b3d56" id="r_a9d4db2970fc7f525824f6666198b3d56"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#a9d4db2970fc7f525824f6666198b3d56">log_antineutrino_loss_bd</a></td></tr>
+<tr class="memdesc:a9d4db2970fc7f525824f6666198b3d56"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(antineutrino loss for β− and e+ capture).  <br /></td></tr>
+<tr class="separator:a9d4db2970fc7f525824f6666198b3d56"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>One row of the unified weak-rate data table for a specific isotope and state. </p>
+<p>Units and meanings:</p><ul>
+<li>t9: temperature in GK (10^9 K).</li>
+<li>log_rhoye: base-10 logarithm of rho*Ye where rho is g cm^-3 and Ye is electron fraction.</li>
+<li>mu_e: electron chemical potential in MeV.</li>
+<li>log_*: base-10 logarithm of the tabulated rate or neutrino-energy loss term.</li>
+</ul>
+<p>Channel mappings:</p><ul>
+<li>beta-plus (β+): log_beta_plus, neutrino-loss column log_neutrino_loss_ec.</li>
+<li>electron capture (e− cap): log_electron_capture, neutrino-loss column log_neutrino_loss_ec.</li>
+<li>beta-minus (β−): log_beta_minus, neutrino-loss column log_antineutrino_loss_bd.</li>
+<li>positron capture (e+ cap): log_positron_capture, neutrino-loss column log_antineutrino_loss_bd. </li>
+</ul>
+</div><h2 class="groupheader">Member Data Documentation</h2>
+<a id="aee9ee73218397780a2a7708c29779c73" name="aee9ee73218397780a2a7708c29779c73"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aee9ee73218397780a2a7708c29779c73">&#9670;&#160;</a></span>A</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">uint16_t gridfire::rates::weak::RateDataRow::A</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Mass number. </p>
+
+</div>
+</div>
+<a id="a9d4db2970fc7f525824f6666198b3d56" name="a9d4db2970fc7f525824f6666198b3d56"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9d4db2970fc7f525824f6666198b3d56">&#9670;&#160;</a></span>log_antineutrino_loss_bd</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::RateDataRow::log_antineutrino_loss_bd</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(antineutrino loss for β− and e+ capture). </p>
+
+</div>
+</div>
+<a id="ab41dace2493e036460736d8124a3475c" name="ab41dace2493e036460736d8124a3475c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab41dace2493e036460736d8124a3475c">&#9670;&#160;</a></span>log_beta_minus</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::RateDataRow::log_beta_minus</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(β− decay rate). </p>
+
+</div>
+</div>
+<a id="a359555f2b05e4b30bf810e12456df43b" name="a359555f2b05e4b30bf810e12456df43b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a359555f2b05e4b30bf810e12456df43b">&#9670;&#160;</a></span>log_beta_plus</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::RateDataRow::log_beta_plus</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(β+ decay rate). </p>
+
+</div>
+</div>
+<a id="a075a70baa4ac5859fb01d493e08debdd" name="a075a70baa4ac5859fb01d493e08debdd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a075a70baa4ac5859fb01d493e08debdd">&#9670;&#160;</a></span>log_electron_capture</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::RateDataRow::log_electron_capture</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(e− capture rate). </p>
+
+</div>
+</div>
+<a id="abd2d7fc00f582316eae824ccafef9b4b" name="abd2d7fc00f582316eae824ccafef9b4b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abd2d7fc00f582316eae824ccafef9b4b">&#9670;&#160;</a></span>log_neutrino_loss_ec</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::RateDataRow::log_neutrino_loss_ec</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(neutrino loss for β+ and e− capture). </p>
+
+</div>
+</div>
+<a id="afc3f5d3e5c3ec52134619fd462922f85" name="afc3f5d3e5c3ec52134619fd462922f85"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#afc3f5d3e5c3ec52134619fd462922f85">&#9670;&#160;</a></span>log_positron_capture</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::RateDataRow::log_positron_capture</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(e+ capture rate). </p>
+
+</div>
+</div>
+<a id="ad7908a8b8a1db5014f23a7b3855156b0" name="ad7908a8b8a1db5014f23a7b3855156b0"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad7908a8b8a1db5014f23a7b3855156b0">&#9670;&#160;</a></span>log_rhoye</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::RateDataRow::log_rhoye</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(rho*Ye) (cgs density times electron fraction). </p>
+
+</div>
+</div>
+<a id="ac08d42071950006ccf3c438253ef9ee9" name="ac08d42071950006ccf3c438253ef9ee9"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ac08d42071950006ccf3c438253ef9ee9">&#9670;&#160;</a></span>mu_e</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::RateDataRow::mu_e</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Electron chemical potential (MeV). </p>
+
+</div>
+</div>
+<a id="a2344c046a615bc6ff07327d6bcfe074b" name="a2344c046a615bc6ff07327d6bcfe074b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2344c046a615bc6ff07327d6bcfe074b">&#9670;&#160;</a></span>t9</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::RateDataRow::t9</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Temperature in GK. </p>
+
+</div>
+</div>
+<a id="a318b62e183dcb49c04260832454fa721" name="a318b62e183dcb49c04260832454fa721"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a318b62e183dcb49c04260832454fa721">&#9670;&#160;</a></span>Z</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">uint8_t gridfire::rates::weak::RateDataRow::Z</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Proton number. </p>
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak__types_8h.html">weak_types.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
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+  <ul>
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index 00000000..64041c79
--- /dev/null
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+[
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+    [ "log_beta_minus", "structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#ab41dace2493e036460736d8124a3475c", null ],
+    [ "log_beta_plus", "structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#a359555f2b05e4b30bf810e12456df43b", null ],
+    [ "log_electron_capture", "structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#a075a70baa4ac5859fb01d493e08debdd", null ],
+    [ "log_neutrino_loss_ec", "structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#abd2d7fc00f582316eae824ccafef9b4b", null ],
+    [ "log_positron_capture", "structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#afc3f5d3e5c3ec52134619fd462922f85", null ],
+    [ "log_rhoye", "structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#ad7908a8b8a1db5014f23a7b3855156b0", null ],
+    [ "mu_e", "structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#ac08d42071950006ccf3c438253ef9ee9", null ],
+    [ "t9", "structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#a2344c046a615bc6ff07327d6bcfe074b", null ],
+    [ "Z", "structgridfire_1_1rates_1_1weak_1_1RateDataRow.html#a318b62e183dcb49c04260832454fa721", null ]
+];
\ No newline at end of file
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakRateDerivatives Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives.html">gridfire::rates::weak::WeakRateDerivatives</a>, including all inherited members.</p>
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+</table></div><!-- contents -->
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+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
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diff --git a/docs/html/structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives.html b/docs/html/structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives.html
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+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakRateDerivatives Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
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+<p>Partial derivatives of the log10() fields w.r.t. (T9, log10(rho*Ye)).  
+ <a href="structgridfire_1_1rates_1_1weak_1_1WeakRateDerivatives.html#details">More...</a></p>
+
+<p><code>#include &lt;weak_types.h&gt;</code></p>
+<div class="dynheader">
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+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
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+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Partial derivatives of the log10() fields w.r.t. (T9, log10(rho*Ye)). </p>
+<p>Array ordering is [d/dT9, d/dlogRhoYe] for each corresponding field. </p>
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+<div class="memitem">
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+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html#aeb0494f46a0c6b9e29ed4cc15f07364b">log_electron_capture</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html">gridfire::rates::weak::WeakRatePayload</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html#a6bbeb82cc27fd59ceafa320c1515106a">log_neutrino_loss_ec</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html">gridfire::rates::weak::WeakRatePayload</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html#abe1b2dd11ec550311a58555f3a945cbe">log_positron_capture</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html">gridfire::rates::weak::WeakRatePayload</a></td><td class="entry"></td></tr>
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+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakRatePayload Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Interpolated weak-rate payload at a single state.  
+ <a href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html#details">More...</a></p>
+
+<p><code>#include &lt;weak_types.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:a9d71d093fbb35cd8a451ea12cde28771" id="r_a9d71d093fbb35cd8a451ea12cde28771"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html#a9d71d093fbb35cd8a451ea12cde28771">log_beta_plus</a></td></tr>
+<tr class="memdesc:a9d71d093fbb35cd8a451ea12cde28771"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(β+ decay rate).  <br /></td></tr>
+<tr class="separator:a9d71d093fbb35cd8a451ea12cde28771"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:aeb0494f46a0c6b9e29ed4cc15f07364b"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(e− capture rate).  <br /></td></tr>
+<tr class="separator:aeb0494f46a0c6b9e29ed4cc15f07364b"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a6bbeb82cc27fd59ceafa320c1515106a"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(neutrino loss for β+ and e− capture).  <br /></td></tr>
+<tr class="separator:a6bbeb82cc27fd59ceafa320c1515106a"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:aa2e81d295afba465427e46b36e1438e4"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(β− decay rate).  <br /></td></tr>
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+<tr class="memdesc:abe1b2dd11ec550311a58555f3a945cbe"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(e+ capture rate).  <br /></td></tr>
+<tr class="separator:abe1b2dd11ec550311a58555f3a945cbe"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a9134b85837be88ece72c20df9edce50d" id="r_a9134b85837be88ece72c20df9edce50d"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakRatePayload.html#a9134b85837be88ece72c20df9edce50d">log_antineutrino_loss_bd</a></td></tr>
+<tr class="memdesc:a9134b85837be88ece72c20df9edce50d"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(antineutrino loss for β− and e+ capture).  <br /></td></tr>
+<tr class="separator:a9134b85837be88ece72c20df9edce50d"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Interpolated weak-rate payload at a single state. </p>
+<p>All values are base-10 logarithms of the corresponding rates or neutrino-loss terms. Consumers typically convert with pow(10, log_value) and may apply sentinel thresholds at the usage site. </p>
+</div><h2 class="groupheader">Member Data Documentation</h2>
+<a id="a9134b85837be88ece72c20df9edce50d" name="a9134b85837be88ece72c20df9edce50d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9134b85837be88ece72c20df9edce50d">&#9670;&#160;</a></span>log_antineutrino_loss_bd</h2>
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+<div class="memitem">
+<div class="memproto">
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+          <td class="memname">double gridfire::rates::weak::WeakRatePayload::log_antineutrino_loss_bd</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(antineutrino loss for β− and e+ capture). </p>
+
+</div>
+</div>
+<a id="aa2e81d295afba465427e46b36e1438e4" name="aa2e81d295afba465427e46b36e1438e4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa2e81d295afba465427e46b36e1438e4">&#9670;&#160;</a></span>log_beta_minus</h2>
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+<div class="memitem">
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+<p>log10(β− decay rate). </p>
+
+</div>
+</div>
+<a id="a9d71d093fbb35cd8a451ea12cde28771" name="a9d71d093fbb35cd8a451ea12cde28771"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a9d71d093fbb35cd8a451ea12cde28771">&#9670;&#160;</a></span>log_beta_plus</h2>
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+<div class="memitem">
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+<p>log10(β+ decay rate). </p>
+
+</div>
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+<a id="aeb0494f46a0c6b9e29ed4cc15f07364b" name="aeb0494f46a0c6b9e29ed4cc15f07364b"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aeb0494f46a0c6b9e29ed4cc15f07364b">&#9670;&#160;</a></span>log_electron_capture</h2>
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+<div class="memitem">
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+          <td class="memname">double gridfire::rates::weak::WeakRatePayload::log_electron_capture</td>
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+<p>log10(e− capture rate). </p>
+
+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#a6bbeb82cc27fd59ceafa320c1515106a">&#9670;&#160;</a></span>log_neutrino_loss_ec</h2>
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+<div class="memitem">
+<div class="memproto">
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+          <td class="memname">double gridfire::rates::weak::WeakRatePayload::log_neutrino_loss_ec</td>
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+
+<p>log10(neutrino loss for β+ and e− capture). </p>
+
+</div>
+</div>
+<a id="abe1b2dd11ec550311a58555f3a945cbe" name="abe1b2dd11ec550311a58555f3a945cbe"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abe1b2dd11ec550311a58555f3a945cbe">&#9670;&#160;</a></span>log_positron_capture</h2>
+
+<div class="memitem">
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+          <td class="memname">double gridfire::rates::weak::WeakRatePayload::log_positron_capture</td>
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+</div><div class="memdoc">
+
+<p>log10(e+ capture rate). </p>
+
+</div>
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+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakReactionEntry Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">gridfire::rates::weak::WeakReactionEntry</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html#aa603395b65c8639f8d93f73b7d9bd61e">log_neutrino_loss</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">gridfire::rates::weak::WeakReactionEntry</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html#a90b6e47918fa750c28917ba6136c7880">log_rate</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">gridfire::rates::weak::WeakReactionEntry</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html#a17dde21438cabec9ae23a0d318c41a7a">log_rhoYe</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">gridfire::rates::weak::WeakReactionEntry</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html#a4a1cbc93d5e197a69a5a29a8cabc6498">mu_e</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">gridfire::rates::weak::WeakReactionEntry</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html#a5a2525ca7e7b2c812b1f67b3b0114aaf">operator&lt;&lt;</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">gridfire::rates::weak::WeakReactionEntry</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html#a549f4c9266722314f61d668d8507145c">T9</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">gridfire::rates::weak::WeakReactionEntry</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html#ad0bb77849bda4934472675e196af87c8">type</a></td><td class="entry"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">gridfire::rates::weak::WeakReactionEntry</a></td><td class="entry"></td></tr>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::rates::weak::WeakReactionEntry Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>A single weak-reaction data point (type, state, and log values).  
+ <a href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html#details">More...</a></p>
+
+<p><code>#include &lt;weak_types.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:ad0bb77849bda4934472675e196af87c8" id="r_ad0bb77849bda4934472675e196af87c8"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7">WeakReactionType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html#ad0bb77849bda4934472675e196af87c8">type</a></td></tr>
+<tr class="memdesc:ad0bb77849bda4934472675e196af87c8"><td class="mdescLeft">&#160;</td><td class="mdescRight">Channel.  <br /></td></tr>
+<tr class="separator:ad0bb77849bda4934472675e196af87c8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a549f4c9266722314f61d668d8507145c" id="r_a549f4c9266722314f61d668d8507145c"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html#a549f4c9266722314f61d668d8507145c">T9</a></td></tr>
+<tr class="memdesc:a549f4c9266722314f61d668d8507145c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Temperature in GK.  <br /></td></tr>
+<tr class="separator:a549f4c9266722314f61d668d8507145c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a17dde21438cabec9ae23a0d318c41a7a" id="r_a17dde21438cabec9ae23a0d318c41a7a"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html#a17dde21438cabec9ae23a0d318c41a7a">log_rhoYe</a></td></tr>
+<tr class="memdesc:a17dde21438cabec9ae23a0d318c41a7a"><td class="mdescLeft">&#160;</td><td class="mdescRight">log10(rho*Ye).  <br /></td></tr>
+<tr class="separator:a17dde21438cabec9ae23a0d318c41a7a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4a1cbc93d5e197a69a5a29a8cabc6498" id="r_a4a1cbc93d5e197a69a5a29a8cabc6498"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html#a4a1cbc93d5e197a69a5a29a8cabc6498">mu_e</a></td></tr>
+<tr class="memdesc:a4a1cbc93d5e197a69a5a29a8cabc6498"><td class="mdescLeft">&#160;</td><td class="mdescRight">Electron chemical potential (MeV).  <br /></td></tr>
+<tr class="separator:a4a1cbc93d5e197a69a5a29a8cabc6498"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a90b6e47918fa750c28917ba6136c7880" id="r_a90b6e47918fa750c28917ba6136c7880"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html#a90b6e47918fa750c28917ba6136c7880">log_rate</a></td></tr>
+<tr class="memdesc:a90b6e47918fa750c28917ba6136c7880"><td class="mdescLeft">&#160;</td><td class="mdescRight">Channel-specific log10(rate).  <br /></td></tr>
+<tr class="separator:a90b6e47918fa750c28917ba6136c7880"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aa603395b65c8639f8d93f73b7d9bd61e" id="r_aa603395b65c8639f8d93f73b7d9bd61e"><td class="memItemLeft" align="right" valign="top">float&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html#aa603395b65c8639f8d93f73b7d9bd61e">log_neutrino_loss</a></td></tr>
+<tr class="memdesc:aa603395b65c8639f8d93f73b7d9bd61e"><td class="mdescLeft">&#160;</td><td class="mdescRight">Corresponding log10(neutrino or antineutrino energy loss).  <br /></td></tr>
+<tr class="separator:aa603395b65c8639f8d93f73b7d9bd61e"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="friends" name="friends"></a>
+Friends</h2></td></tr>
+<tr class="memitem:a5a2525ca7e7b2c812b1f67b3b0114aaf" id="r_a5a2525ca7e7b2c812b1f67b3b0114aaf"><td class="memItemLeft" align="right" valign="top">std::ostream &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html#a5a2525ca7e7b2c812b1f67b3b0114aaf">operator&lt;&lt;</a> (std::ostream &amp;os, const <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">WeakReactionEntry</a> &amp;reaction)</td></tr>
+<tr class="separator:a5a2525ca7e7b2c812b1f67b3b0114aaf"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>A single weak-reaction data point (type, state, and log values). </p>
+<p>All rates and losses are base-10 logarithms. Useful for listing and filtering weak entries for a Species.</p>
+<dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><a class="code hl_struct" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">WeakReactionEntry</a> e{<a class="code hl_enumvalue" href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a26b6967eb578cb1b08373b342bf72ef7">WeakReactionType::ELECTRON_CAPTURE</a>, 3.0f, 6.0f, 2.0f, -2.3f, -1.7f};</div>
+<div class="line">std::cout &lt;&lt; e &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>; <span class="comment">// prints a compact summary</span></div>
+<div class="ttc" id="anamespacegridfire_1_1rates_1_1weak_html_ae834fb6f8cd1ac922967d5296a25bec7a26b6967eb578cb1b08373b342bf72ef7"><div class="ttname"><a href="namespacegridfire_1_1rates_1_1weak.html#ae834fb6f8cd1ac922967d5296a25bec7a26b6967eb578cb1b08373b342bf72ef7">gridfire::rates::weak::WeakReactionType::ELECTRON_CAPTURE</a></div><div class="ttdeci">@ ELECTRON_CAPTURE</div><div class="ttdoc">e− capture: (Z, e−) -&gt; Z-1 + ν_e</div></div>
+<div class="ttc" id="astructgridfire_1_1rates_1_1weak_1_1WeakReactionEntry_html"><div class="ttname"><a href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">gridfire::rates::weak::WeakReactionEntry</a></div><div class="ttdoc">A single weak-reaction data point (type, state, and log values).</div><div class="ttdef"><b>Definition</b> weak_types.h:213</div></div>
+</div><!-- fragment --> </dd></dl>
+</div><h2 class="groupheader">Friends And Related Symbol Documentation</h2>
+<a id="a5a2525ca7e7b2c812b1f67b3b0114aaf" name="a5a2525ca7e7b2c812b1f67b3b0114aaf"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5a2525ca7e7b2c812b1f67b3b0114aaf">&#9670;&#160;</a></span>operator&lt;&lt;</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::ostream &amp; operator&lt;&lt; </td>
+          <td>(</td>
+          <td class="paramtype">std::ostream &amp;&#160;</td>
+          <td class="paramname"><em>os</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReactionEntry.html">WeakReactionEntry</a> &amp;&#160;</td>
+          <td class="paramname"><em>reaction</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">friend</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="aa603395b65c8639f8d93f73b7d9bd61e" name="aa603395b65c8639f8d93f73b7d9bd61e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aa603395b65c8639f8d93f73b7d9bd61e">&#9670;&#160;</a></span>log_neutrino_loss</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::WeakReactionEntry::log_neutrino_loss</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Corresponding log10(neutrino or antineutrino energy loss). </p>
+
+</div>
+</div>
+<a id="a90b6e47918fa750c28917ba6136c7880" name="a90b6e47918fa750c28917ba6136c7880"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a90b6e47918fa750c28917ba6136c7880">&#9670;&#160;</a></span>log_rate</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::WeakReactionEntry::log_rate</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Channel-specific log10(rate). </p>
+
+</div>
+</div>
+<a id="a17dde21438cabec9ae23a0d318c41a7a" name="a17dde21438cabec9ae23a0d318c41a7a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a17dde21438cabec9ae23a0d318c41a7a">&#9670;&#160;</a></span>log_rhoYe</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::WeakReactionEntry::log_rhoYe</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>log10(rho*Ye). </p>
+
+</div>
+</div>
+<a id="a4a1cbc93d5e197a69a5a29a8cabc6498" name="a4a1cbc93d5e197a69a5a29a8cabc6498"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4a1cbc93d5e197a69a5a29a8cabc6498">&#9670;&#160;</a></span>mu_e</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::WeakReactionEntry::mu_e</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Electron chemical potential (MeV). </p>
+
+</div>
+</div>
+<a id="a549f4c9266722314f61d668d8507145c" name="a549f4c9266722314f61d668d8507145c"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a549f4c9266722314f61d668d8507145c">&#9670;&#160;</a></span>T9</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">float gridfire::rates::weak::WeakReactionEntry::T9</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Temperature in GK. </p>
+
+</div>
+</div>
+<a id="ad0bb77849bda4934472675e196af87c8" name="ad0bb77849bda4934472675e196af87c8"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ad0bb77849bda4934472675e196af87c8">&#9670;&#160;</a></span>type</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
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+<p>Channel. </p>
+
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+</ul>
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+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html">gridfire::rates::weak::WeakReaction::constants</a>, including all inherited members.</p>
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+<tr class="separator:ab7d46e02bb7264ff3aada6b3997b2ab1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="abe06f72b5b646cb3f1462b56d94a1de4" name="abe06f72b5b646cb3f1462b56d94a1de4"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abe06f72b5b646cb3f1462b56d94a1de4">&#9670;&#160;</a></span>amu</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::constant::Constant gridfire::rates::weak::WeakReaction::constants::amu = c.get(&quot;u&quot;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab176a60ea64181d84be3bb6496ad0b0e" name="ab176a60ea64181d84be3bb6496ad0b0e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab176a60ea64181d84be3bb6496ad0b0e">&#9670;&#160;</a></span>c</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const fourdst::constant::Constants&amp; gridfire::rates::weak::WeakReaction::constants::c = fourdst::constant::Constants::getInstance()</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a8998f5acb979463eeabb14da50fb6856" name="a8998f5acb979463eeabb14da50fb6856"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a8998f5acb979463eeabb14da50fb6856">&#9670;&#160;</a></span>electronMassG</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::constant::Constant gridfire::rates::weak::WeakReaction::constants::electronMassG = c.get(&quot;mE&quot;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a24d6517e15c177fb8ca72f08f8eaf509" name="a24d6517e15c177fb8ca72f08f8eaf509"></a>
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+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::constants::electronMassMeV = electronMassG.value * <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#ab60f42677de82f3aab77d2af846c2ffd">MeVgRelation</a></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="af834029caff08f9d5f7ff3a817ade469" name="af834029caff08f9d5f7ff3a817ade469"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#af834029caff08f9d5f7ff3a817ade469">&#9670;&#160;</a></span>eVgRelation</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::constant::Constant gridfire::rates::weak::WeakReaction::constants::eVgRelation = c.get(&quot;eV_kg&quot;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ae527298ffcdeb0b7b4089eeed4ddb58d" name="ae527298ffcdeb0b7b4089eeed4ddb58d"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae527298ffcdeb0b7b4089eeed4ddb58d">&#9670;&#160;</a></span>MeV2Erg</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::constant::Constant gridfire::rates::weak::WeakReaction::constants::MeV2Erg = c.get(&quot;MeV_to_erg&quot;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="ab60f42677de82f3aab77d2af846c2ffd" name="ab60f42677de82f3aab77d2af846c2ffd"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ab60f42677de82f3aab77d2af846c2ffd">&#9670;&#160;</a></span>MeVgRelation</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::constants::MeVgRelation = eVgRelation.value * 1.0e6</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a57273916131b68d1aed6e16d85667427" name="a57273916131b68d1aed6e16d85667427"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a57273916131b68d1aed6e16d85667427">&#9670;&#160;</a></span>MeVPerGraph</h2>
+
+<div class="memitem">
+<div class="memproto">
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+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::constants::MeVPerGraph = 1.0/<a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#ab60f42677de82f3aab77d2af846c2ffd">MeVgRelation</a></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a2d6c6d4eb9b54c050c266298611c1e44" name="a2d6c6d4eb9b54c050c266298611c1e44"></a>
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+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::constant::Constant gridfire::rates::weak::WeakReaction::constants::neutronMassG = c.get(&quot;mN&quot;)</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="a0629ea0e5d51166e400696a358b0045e" name="a0629ea0e5d51166e400696a358b0045e"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0629ea0e5d51166e400696a358b0045e">&#9670;&#160;</a></span>neutronMassMeV</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::constants::neutronMassMeV = neutronMassG.value * <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#ab60f42677de82f3aab77d2af846c2ffd">MeVgRelation</a></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<a id="abdb3124f6ef5ea294f402d30717fa208" name="abdb3124f6ef5ea294f402d30717fa208"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abdb3124f6ef5ea294f402d30717fa208">&#9670;&#160;</a></span>protonMassG</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">fourdst::constant::Constant gridfire::rates::weak::WeakReaction::constants::protonMassG = c.get(&quot;mP&quot;)</td>
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+</div><div class="memdoc">
+
+</div>
+</div>
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+
+<div class="memitem">
+<div class="memproto">
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+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::constants::protonMassMeV = protonMassG.value * <a class="el" href="structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#ab60f42677de82f3aab77d2af846c2ffd">MeVgRelation</a></td>
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+</div><div class="memdoc">
+
+</div>
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+<div class="memproto">
+      <table class="memname">
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+
+</div>
+</div>
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+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::rates::weak::WeakReaction::constants::u_to_MeV = (amu.value * speedOfLight.value * speedOfLight.value)/MeV2Erg.value</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak_8h.html">weak.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
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new file mode 100644
index 00000000..1fb09890
--- /dev/null
+++ b/docs/html/structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.js
@@ -0,0 +1,17 @@
+var structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants =
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+    [ "c", "structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#ab176a60ea64181d84be3bb6496ad0b0e", null ],
+    [ "electronMassG", "structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#a8998f5acb979463eeabb14da50fb6856", null ],
+    [ "electronMassMeV", "structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#a24d6517e15c177fb8ca72f08f8eaf509", null ],
+    [ "eVgRelation", "structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#af834029caff08f9d5f7ff3a817ade469", null ],
+    [ "MeV2Erg", "structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#ae527298ffcdeb0b7b4089eeed4ddb58d", null ],
+    [ "MeVgRelation", "structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#ab60f42677de82f3aab77d2af846c2ffd", null ],
+    [ "MeVPerGraph", "structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#a57273916131b68d1aed6e16d85667427", null ],
+    [ "neutronMassG", "structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#a2d6c6d4eb9b54c050c266298611c1e44", null ],
+    [ "neutronMassMeV", "structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#a0629ea0e5d51166e400696a358b0045e", null ],
+    [ "protonMassG", "structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#abdb3124f6ef5ea294f402d30717fa208", null ],
+    [ "protonMassMeV", "structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#a8a780d3937e60794f007ec65fe866a56", null ],
+    [ "speedOfLight", "structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#a016c3e02f622e21073f9110707177b76", null ],
+    [ "u_to_MeV", "structgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1constants.html#ab7d46e02bb7264ff3aada6b3997b2ab1", null ]
+];
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+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1reaclib_1_1ReactionRecord.html">gridfire::reaclib::ReactionRecord</a>, including all inherited members.</p>
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+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1reaclib_1_1ReactionRecord.html#a80803f612e574859fde0a163bca84bc0">coeffs</a></td><td class="entry"><a class="el" href="structgridfire_1_1reaclib_1_1ReactionRecord.html">gridfire::reaclib::ReactionRecord</a></td><td class="entry"></td></tr>
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+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1reaclib_1_1ReactionRecord.html#a67afc513db8dbcc43d79733e22ca8d39">reactants_str</a></td><td class="entry"><a class="el" href="structgridfire_1_1reaclib_1_1ReactionRecord.html">gridfire::reaclib::ReactionRecord</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1reaclib_1_1ReactionRecord.html#aa1fd4f510d7c00d2e4197e9b9caf29fd">reverse</a></td><td class="entry"><a class="el" href="structgridfire_1_1reaclib_1_1ReactionRecord.html">gridfire::reaclib::ReactionRecord</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1reaclib_1_1ReactionRecord.html#a523b7cfb0a6d8ddccd785aef2f425ad1">rpName</a></td><td class="entry"><a class="el" href="structgridfire_1_1reaclib_1_1ReactionRecord.html">gridfire::reaclib::ReactionRecord</a></td><td class="entry"></td></tr>
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+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1reaclib_1_1ReactionRecord-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::reaclib::ReactionRecord Struct Reference</div></div>
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+<tr class="separator:af1b1d3b0308d965ef0697b247fcf9082"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<h2 class="groupheader">Member Data Documentation</h2>
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+  <div class="headertitle"><div class="title">gridfire::reaction::RateCoefficientSet Member List</div></div>
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+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html#a31a92f95a27e4430209dfc2bdfa5c40f">operator&lt;&lt;</a></td><td class="entry"><a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">gridfire::reaction::RateCoefficientSet</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="#friends">Friends</a> &#124;
+<a href="structgridfire_1_1reaction_1_1RateCoefficientSet-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::reaction::RateCoefficientSet Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Holds the seven coefficients for the REACLIB rate equation.  
+ <a href="structgridfire_1_1reaction_1_1RateCoefficientSet.html#details">More...</a></p>
+
+<p><code>#include &lt;reaction.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:a2fa6b65e300dcd181222b743c2b3d6ed" id="r_a2fa6b65e300dcd181222b743c2b3d6ed"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html#a2fa6b65e300dcd181222b743c2b3d6ed">a0</a></td></tr>
+<tr class="memdesc:a2fa6b65e300dcd181222b743c2b3d6ed"><td class="mdescLeft">&#160;</td><td class="mdescRight">Coefficient a0.  <br /></td></tr>
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+<tr class="memdesc:a2a9316d19bc2e8bf0a7872eb6fe8a53f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Coefficient a2.  <br /></td></tr>
+<tr class="separator:a2a9316d19bc2e8bf0a7872eb6fe8a53f"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a3d047485ebb57d6c763adfe4aae493b1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Coefficient a3.  <br /></td></tr>
+<tr class="separator:a3d047485ebb57d6c763adfe4aae493b1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae57b2eac71cb4ed9947f40c9cb8fc3ca" id="r_ae57b2eac71cb4ed9947f40c9cb8fc3ca"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html#ae57b2eac71cb4ed9947f40c9cb8fc3ca">a4</a></td></tr>
+<tr class="memdesc:ae57b2eac71cb4ed9947f40c9cb8fc3ca"><td class="mdescLeft">&#160;</td><td class="mdescRight">Coefficient a4.  <br /></td></tr>
+<tr class="separator:ae57b2eac71cb4ed9947f40c9cb8fc3ca"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:a8c79db4e649b4eb1d29c43ebe4e95458"><td class="mdescLeft">&#160;</td><td class="mdescRight">Coefficient a5.  <br /></td></tr>
+<tr class="separator:a8c79db4e649b4eb1d29c43ebe4e95458"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="memdesc:adf8e6ed7f91cb9e15d1469a808b1877a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Coefficient a6.  <br /></td></tr>
+<tr class="separator:adf8e6ed7f91cb9e15d1469a808b1877a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="friends" name="friends"></a>
+Friends</h2></td></tr>
+<tr class="memitem:a31a92f95a27e4430209dfc2bdfa5c40f" id="r_a31a92f95a27e4430209dfc2bdfa5c40f"><td class="memItemLeft" align="right" valign="top">std::ostream &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html#a31a92f95a27e4430209dfc2bdfa5c40f">operator&lt;&lt;</a> (std::ostream &amp;os, const <a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">RateCoefficientSet</a> &amp;r)</td></tr>
+<tr class="memdesc:a31a92f95a27e4430209dfc2bdfa5c40f"><td class="mdescLeft">&#160;</td><td class="mdescRight">Overloads the stream insertion operator for easy printing.  <br /></td></tr>
+<tr class="separator:a31a92f95a27e4430209dfc2bdfa5c40f"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Holds the seven coefficients for the REACLIB rate equation. </p>
+<p>This struct stores the parameters (a0-a6) used to calculate reaction rates as a function of temperature. </p>
+</div><h2 class="groupheader">Friends And Related Symbol Documentation</h2>
+<a id="a31a92f95a27e4430209dfc2bdfa5c40f" name="a31a92f95a27e4430209dfc2bdfa5c40f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a31a92f95a27e4430209dfc2bdfa5c40f">&#9670;&#160;</a></span>operator&lt;&lt;</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::ostream &amp; operator&lt;&lt; </td>
+          <td>(</td>
+          <td class="paramtype">std::ostream &amp;&#160;</td>
+          <td class="paramname"><em>os</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html">RateCoefficientSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>r</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">friend</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Overloads the stream insertion operator for easy printing. </p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">os</td><td>The output stream. </td></tr>
+    <tr><td class="paramname">r</td><td>The <a class="el" href="structgridfire_1_1reaction_1_1RateCoefficientSet.html" title="Holds the seven coefficients for the REACLIB rate equation.">RateCoefficientSet</a> to print. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>The output stream. </dd></dl>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="a2fa6b65e300dcd181222b743c2b3d6ed" name="a2fa6b65e300dcd181222b743c2b3d6ed"></a>
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+
+<div class="memitem">
+<div class="memproto">
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+          <td class="memname">double gridfire::reaction::RateCoefficientSet::a0</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Coefficient a0. </p>
+
+</div>
+</div>
+<a id="ace9dbd928e179784e47eaa108ce8d721" name="ace9dbd928e179784e47eaa108ce8d721"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ace9dbd928e179784e47eaa108ce8d721">&#9670;&#160;</a></span>a1</h2>
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+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
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+          <td class="memname">double gridfire::reaction::RateCoefficientSet::a1</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Coefficient a1. </p>
+
+</div>
+</div>
+<a id="a2a9316d19bc2e8bf0a7872eb6fe8a53f" name="a2a9316d19bc2e8bf0a7872eb6fe8a53f"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a2a9316d19bc2e8bf0a7872eb6fe8a53f">&#9670;&#160;</a></span>a2</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
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+          <td class="memname">double gridfire::reaction::RateCoefficientSet::a2</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Coefficient a2. </p>
+
+</div>
+</div>
+<a id="a3d047485ebb57d6c763adfe4aae493b1" name="a3d047485ebb57d6c763adfe4aae493b1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a3d047485ebb57d6c763adfe4aae493b1">&#9670;&#160;</a></span>a3</h2>
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+<div class="memitem">
+<div class="memproto">
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+          <td class="memname">double gridfire::reaction::RateCoefficientSet::a3</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Coefficient a3. </p>
+
+</div>
+</div>
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+          <td class="memname">double gridfire::reaction::RateCoefficientSet::a4</td>
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+      </table>
+</div><div class="memdoc">
+
+<p>Coefficient a4. </p>
+
+</div>
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+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::reaction::RateCoefficientSet::a5</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Coefficient a5. </p>
+
+</div>
+</div>
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+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">double gridfire::reaction::RateCoefficientSet::a6</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Coefficient a6. </p>
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::solver::CVODESolverStrategy::CVODERHSOutputData Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODERHSOutputData.html">gridfire::solver::CVODESolverStrategy::CVODERHSOutputData</a>, including all inherited members.</p>
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+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODERHSOutputData.html#ab36ca1b318b47e72c05f1e162f005e1b">total_neutrino_flux</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODERHSOutputData.html">gridfire::solver::CVODESolverStrategy::CVODERHSOutputData</a></td><td class="entry"></td></tr>
+</table></div><!-- contents -->
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+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
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diff --git a/docs/html/structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODERHSOutputData.html b/docs/html/structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODERHSOutputData.html
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+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+</div>
+</div>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
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+  <div class="headertitle"><div class="title">gridfire::solver::CVODESolverStrategy::CVODERHSOutputData Struct Reference</div></div>
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+<div class="contents">
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+<tr class="separator:a4b4f0c0733813d6931eeb3b3c942ada9"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+<tr class="separator:a449c2a51ffbe6a14f1916afd8a2a20fb"><td class="memSeparator" colspan="2">&#160;</td></tr>
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+
+</div>
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::solver::CVODESolverStrategy::CVODEUserData Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html">gridfire::solver::CVODESolverStrategy::CVODEUserData</a>, including all inherited members.</p>
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+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a574e03aef08e1d3c9f4914bda1ad78c6">captured_exception</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a1fb4ca773aaad8d1d958a3a0e82d8edd">energy</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a657f34d754521a6991351e29e0942ed6">engine</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a41a5bc46358cb59373f62c791e1bc29c">networkSpecies</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a309e36605c79136e96f91f89dcde06d6">neutrino_energy_loss_rate</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a7c0adecacbb007c513d1b6c82e30d165">reaction_contribution_map</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#afdc510f8160693806737c4ab517058b8">rho</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#ad7f3eb9caae25ef25357c41c23d6b392">solver_instance</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html">gridfire::solver::CVODESolverStrategy::CVODEUserData</a></td><td class="entry"></td></tr>
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diff --git a/docs/html/structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html b/docs/html/structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html
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+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData-members.html">List of all members</a>  </div>
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+<p>A helper struct to pass C++ context to C-style CVODE callbacks.  
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+Collaboration diagram for gridfire::solver::CVODESolverStrategy::CVODEUserData:</div>
+<div class="dyncontent">
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+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
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+<tr class="separator:ad7f3eb9caae25ef25357c41c23d6b392"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a657f34d754521a6991351e29e0942ed6" id="r_a657f34d754521a6991351e29e0942ed6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a> *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a657f34d754521a6991351e29e0942ed6">engine</a> {}</td></tr>
+<tr class="separator:a657f34d754521a6991351e29e0942ed6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a0b27605ac3211a1805d7910c899bbcce" id="r_a0b27605ac3211a1805d7910c899bbcce"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a0b27605ac3211a1805d7910c899bbcce">T9</a> {}</td></tr>
+<tr class="separator:a0b27605ac3211a1805d7910c899bbcce"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:afdc510f8160693806737c4ab517058b8" id="r_afdc510f8160693806737c4ab517058b8"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#afdc510f8160693806737c4ab517058b8">rho</a> {}</td></tr>
+<tr class="separator:afdc510f8160693806737c4ab517058b8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a1fb4ca773aaad8d1d958a3a0e82d8edd" id="r_a1fb4ca773aaad8d1d958a3a0e82d8edd"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a1fb4ca773aaad8d1d958a3a0e82d8edd">energy</a> {}</td></tr>
+<tr class="separator:a1fb4ca773aaad8d1d958a3a0e82d8edd"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a41a5bc46358cb59373f62c791e1bc29c" id="r_a41a5bc46358cb59373f62c791e1bc29c"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a41a5bc46358cb59373f62c791e1bc29c">networkSpecies</a> {}</td></tr>
+<tr class="separator:a41a5bc46358cb59373f62c791e1bc29c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a574e03aef08e1d3c9f4914bda1ad78c6" id="r_a574e03aef08e1d3c9f4914bda1ad78c6"><td class="memItemLeft" align="right" valign="top">std::unique_ptr&lt; <a class="el" href="classgridfire_1_1exceptions_1_1EngineError.html">exceptions::EngineError</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a574e03aef08e1d3c9f4914bda1ad78c6">captured_exception</a> = nullptr</td></tr>
+<tr class="separator:a574e03aef08e1d3c9f4914bda1ad78c6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7c0adecacbb007c513d1b6c82e30d165" id="r_a7c0adecacbb007c513d1b6c82e30d165"><td class="memItemLeft" align="right" valign="top">std::optional&lt; std::map&lt; fourdst::atomic::Species, std::unordered_map&lt; std::string, double &gt; &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a7c0adecacbb007c513d1b6c82e30d165">reaction_contribution_map</a></td></tr>
+<tr class="separator:a7c0adecacbb007c513d1b6c82e30d165"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a309e36605c79136e96f91f89dcde06d6" id="r_a309e36605c79136e96f91f89dcde06d6"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a309e36605c79136e96f91f89dcde06d6">neutrino_energy_loss_rate</a> = 0.0</td></tr>
+<tr class="separator:a309e36605c79136e96f91f89dcde06d6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a7a495c5df9e1da7f2e7182511f6a95c8" id="r_a7a495c5df9e1da7f2e7182511f6a95c8"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1CVODEUserData.html#a7a495c5df9e1da7f2e7182511f6a95c8">total_neutrino_flux</a> = 0.0</td></tr>
+<tr class="separator:a7a495c5df9e1da7f2e7182511f6a95c8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>A helper struct to pass C++ context to C-style CVODE callbacks. </p>
+<p>Carries pointers back to the solver instance and engine, the current thermodynamic state, energy accumulator, and a slot to capture a copy of exceptions::StaleEngineTrigger from RHS evaluation. The RHS wrapper treats this as a recoverable failure and returns 1 to CVODE, then the driver loop inspects and rethrows. </p>
+</div><h2 class="groupheader">Member Data Documentation</h2>
+<a id="a574e03aef08e1d3c9f4914bda1ad78c6" name="a574e03aef08e1d3c9f4914bda1ad78c6"></a>
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+<div class="memproto">
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+          <td class="memname">double gridfire::solver::CVODESolverStrategy::CVODEUserData::energy {}</td>
+        </tr>
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+</div><div class="memdoc">
+
+</div>
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+          <td class="memname"><a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a>* gridfire::solver::CVODESolverStrategy::CVODEUserData::engine {}</td>
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+      </table>
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+
+</div>
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+          <td class="memname">double gridfire::solver::CVODESolverStrategy::CVODEUserData::neutrino_energy_loss_rate = 0.0</td>
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+
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+<div class="header">
+  <div class="headertitle"><div class="title">gridfire::solver::CVODESolverStrategy::TimestepContext Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#adef40af49e162d2429db1030f6341d96">currentConvergenceFailures</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#aefa6b183bf963f6e01c5157b7c0f158a">currentNonlinearIterations</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#ae3c6320ce7a8f41c9ae36c42d62b4204">describe</a>() const override</td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a6442d15673e6385bb6fdd11e1179c487">dt</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a5a457651dcb9d4a66ed219ddf7095313">engine</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a4a92187c15b7bcb90adebecc87e1436a">last_step_time</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a75d7e32c9df3d8a047069fe2d64cd089">networkSpecies</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a51e86d2721053055d8479662b864e367">num_steps</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#aaad8a2e08769b629086133d3b079e3b1">reactionContributionMap</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a4a25afbc9f8a907304992e144dfa3529">rho</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#aaae3c42b9172be4d501f022e67f5a6f6">state</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a0b39f0d207181840efacb64417b492ae">t</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a25743a21ed801ed4288309f35dc9a289">T9</a></td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="odd"><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a04c4ce00c6a0a62ba6d1e6fb1a0a53be">TimestepContext</a>(double t, const N_Vector &amp;state, double dt, double last_step_time, double t9, double rho, size_t num_steps, const engine::DynamicEngine &amp;engine, const std::vector&lt; fourdst::atomic::Species &gt; &amp;networkSpecies, size_t currentConvergenceFailure, size_t currentNonlinearIterations, const std::map&lt; fourdst::atomic::Species, std::unordered_map&lt; std::string, double &gt; &gt; &amp;reactionContributionMap)</td><td class="entry"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html">gridfire::solver::CVODESolverStrategy::TimestepContext</a></td><td class="entry"></td></tr>
+  <tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1SolverContextBase.html#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8">~SolverContextBase</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1solver_1_1SolverContextBase.html">gridfire::solver::SolverContextBase</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::solver::CVODESolverStrategy::TimestepContext Struct Reference<span class="mlabels"><span class="mlabel">final</span></span></div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>Immutable view of the current integration state passed to callbacks.  
+ <a href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#details">More...</a></p>
+
+<p><code>#include &lt;CVODE_solver_strategy.h&gt;</code></p>
+<div class="dynheader">
+Inheritance diagram for gridfire::solver::CVODESolverStrategy::TimestepContext:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext__inherit__graph.svg" width="222" height="139"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<div class="dynheader">
+Collaboration diagram for gridfire::solver::CVODESolverStrategy::TimestepContext:</div>
+<div class="dyncontent">
+<div class="center"><div class="zoom"><iframe scrolling="no" frameborder="0" src="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext__coll__graph.svg" width="100%" height="504"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:a04c4ce00c6a0a62ba6d1e6fb1a0a53be" id="r_a04c4ce00c6a0a62ba6d1e6fb1a0a53be"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a04c4ce00c6a0a62ba6d1e6fb1a0a53be">TimestepContext</a> (double <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a0b39f0d207181840efacb64417b492ae">t</a>, const N_Vector &amp;<a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#aaae3c42b9172be4d501f022e67f5a6f6">state</a>, double <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a6442d15673e6385bb6fdd11e1179c487">dt</a>, double <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a4a92187c15b7bcb90adebecc87e1436a">last_step_time</a>, double t9, double <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a4a25afbc9f8a907304992e144dfa3529">rho</a>, size_t <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a51e86d2721053055d8479662b864e367">num_steps</a>, const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a> &amp;<a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a5a457651dcb9d4a66ed219ddf7095313">engine</a>, const std::vector&lt; fourdst::atomic::Species &gt; &amp;<a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a75d7e32c9df3d8a047069fe2d64cd089">networkSpecies</a>, size_t currentConvergenceFailure, size_t <a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#aefa6b183bf963f6e01c5157b7c0f158a">currentNonlinearIterations</a>, const std::map&lt; fourdst::atomic::Species, std::unordered_map&lt; std::string, double &gt; &gt; &amp;<a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#aaad8a2e08769b629086133d3b079e3b1">reactionContributionMap</a>)</td></tr>
+<tr class="memdesc:a04c4ce00c6a0a62ba6d1e6fb1a0a53be"><td class="mdescLeft">&#160;</td><td class="mdescRight">Construct a context snapshot.  <br /></td></tr>
+<tr class="separator:a04c4ce00c6a0a62ba6d1e6fb1a0a53be"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:ae3c6320ce7a8f41c9ae36c42d62b4204" id="r_ae3c6320ce7a8f41c9ae36c42d62b4204"><td class="memItemLeft" align="right" valign="top">std::vector&lt; std::tuple&lt; std::string, std::string &gt; &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#ae3c6320ce7a8f41c9ae36c42d62b4204">describe</a> () const override</td></tr>
+<tr class="memdesc:ae3c6320ce7a8f41c9ae36c42d62b4204"><td class="mdescLeft">&#160;</td><td class="mdescRight">Human-readable description of the context fields.  <br /></td></tr>
+<tr class="separator:ae3c6320ce7a8f41c9ae36c42d62b4204"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="inherit_header pub_methods_classgridfire_1_1solver_1_1SolverContextBase"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classgridfire_1_1solver_1_1SolverContextBase')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classgridfire_1_1solver_1_1SolverContextBase.html">gridfire::solver::SolverContextBase</a></td></tr>
+<tr class="memitem:ab1abf9e5ff7f53a6cebe5e00ea5fc0c8 inherit pub_methods_classgridfire_1_1solver_1_1SolverContextBase" id="r_ab1abf9e5ff7f53a6cebe5e00ea5fc0c8"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1solver_1_1SolverContextBase.html#ab1abf9e5ff7f53a6cebe5e00ea5fc0c8">~SolverContextBase</a> ()=default</td></tr>
+<tr class="separator:ab1abf9e5ff7f53a6cebe5e00ea5fc0c8 inherit pub_methods_classgridfire_1_1solver_1_1SolverContextBase"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table><table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-attribs" name="pub-attribs"></a>
+Public Attributes</h2></td></tr>
+<tr class="memitem:a0b39f0d207181840efacb64417b492ae" id="r_a0b39f0d207181840efacb64417b492ae"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a0b39f0d207181840efacb64417b492ae">t</a></td></tr>
+<tr class="memdesc:a0b39f0d207181840efacb64417b492ae"><td class="mdescLeft">&#160;</td><td class="mdescRight">Current integration time [s].  <br /></td></tr>
+<tr class="separator:a0b39f0d207181840efacb64417b492ae"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aaae3c42b9172be4d501f022e67f5a6f6" id="r_aaae3c42b9172be4d501f022e67f5a6f6"><td class="memItemLeft" align="right" valign="top">const N_Vector &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#aaae3c42b9172be4d501f022e67f5a6f6">state</a></td></tr>
+<tr class="memdesc:aaae3c42b9172be4d501f022e67f5a6f6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Current CVODE state vector (N_Vector).  <br /></td></tr>
+<tr class="separator:aaae3c42b9172be4d501f022e67f5a6f6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a6442d15673e6385bb6fdd11e1179c487" id="r_a6442d15673e6385bb6fdd11e1179c487"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a6442d15673e6385bb6fdd11e1179c487">dt</a></td></tr>
+<tr class="memdesc:a6442d15673e6385bb6fdd11e1179c487"><td class="mdescLeft">&#160;</td><td class="mdescRight">Last step size [s].  <br /></td></tr>
+<tr class="separator:a6442d15673e6385bb6fdd11e1179c487"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4a92187c15b7bcb90adebecc87e1436a" id="r_a4a92187c15b7bcb90adebecc87e1436a"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a4a92187c15b7bcb90adebecc87e1436a">last_step_time</a></td></tr>
+<tr class="memdesc:a4a92187c15b7bcb90adebecc87e1436a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Time at last callback [s].  <br /></td></tr>
+<tr class="separator:a4a92187c15b7bcb90adebecc87e1436a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a25743a21ed801ed4288309f35dc9a289" id="r_a25743a21ed801ed4288309f35dc9a289"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a25743a21ed801ed4288309f35dc9a289">T9</a></td></tr>
+<tr class="memdesc:a25743a21ed801ed4288309f35dc9a289"><td class="mdescLeft">&#160;</td><td class="mdescRight">Temperature in GK.  <br /></td></tr>
+<tr class="separator:a25743a21ed801ed4288309f35dc9a289"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a4a25afbc9f8a907304992e144dfa3529" id="r_a4a25afbc9f8a907304992e144dfa3529"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a4a25afbc9f8a907304992e144dfa3529">rho</a></td></tr>
+<tr class="memdesc:a4a25afbc9f8a907304992e144dfa3529"><td class="mdescLeft">&#160;</td><td class="mdescRight">Density [g cm^-3].  <br /></td></tr>
+<tr class="separator:a4a25afbc9f8a907304992e144dfa3529"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a51e86d2721053055d8479662b864e367" id="r_a51e86d2721053055d8479662b864e367"><td class="memItemLeft" align="right" valign="top">const size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a51e86d2721053055d8479662b864e367">num_steps</a></td></tr>
+<tr class="memdesc:a51e86d2721053055d8479662b864e367"><td class="mdescLeft">&#160;</td><td class="mdescRight">Number of CVODE steps taken so far.  <br /></td></tr>
+<tr class="separator:a51e86d2721053055d8479662b864e367"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a5a457651dcb9d4a66ed219ddf7095313" id="r_a5a457651dcb9d4a66ed219ddf7095313"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a5a457651dcb9d4a66ed219ddf7095313">engine</a></td></tr>
+<tr class="memdesc:a5a457651dcb9d4a66ed219ddf7095313"><td class="mdescLeft">&#160;</td><td class="mdescRight">Reference to the engine.  <br /></td></tr>
+<tr class="separator:a5a457651dcb9d4a66ed219ddf7095313"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a75d7e32c9df3d8a047069fe2d64cd089" id="r_a75d7e32c9df3d8a047069fe2d64cd089"><td class="memItemLeft" align="right" valign="top">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a75d7e32c9df3d8a047069fe2d64cd089">networkSpecies</a></td></tr>
+<tr class="memdesc:a75d7e32c9df3d8a047069fe2d64cd089"><td class="mdescLeft">&#160;</td><td class="mdescRight">Species layout.  <br /></td></tr>
+<tr class="separator:a75d7e32c9df3d8a047069fe2d64cd089"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:adef40af49e162d2429db1030f6341d96" id="r_adef40af49e162d2429db1030f6341d96"><td class="memItemLeft" align="right" valign="top">const size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#adef40af49e162d2429db1030f6341d96">currentConvergenceFailures</a></td></tr>
+<tr class="memdesc:adef40af49e162d2429db1030f6341d96"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of convergence failures.  <br /></td></tr>
+<tr class="separator:adef40af49e162d2429db1030f6341d96"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aefa6b183bf963f6e01c5157b7c0f158a" id="r_aefa6b183bf963f6e01c5157b7c0f158a"><td class="memItemLeft" align="right" valign="top">const size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#aefa6b183bf963f6e01c5157b7c0f158a">currentNonlinearIterations</a></td></tr>
+<tr class="memdesc:aefa6b183bf963f6e01c5157b7c0f158a"><td class="mdescLeft">&#160;</td><td class="mdescRight">Total number of non-linear iterations.  <br /></td></tr>
+<tr class="separator:aefa6b183bf963f6e01c5157b7c0f158a"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aaad8a2e08769b629086133d3b079e3b1" id="r_aaad8a2e08769b629086133d3b079e3b1"><td class="memItemLeft" align="right" valign="top">const std::map&lt; fourdst::atomic::Species, std::unordered_map&lt; std::string, double &gt; &gt; &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#aaad8a2e08769b629086133d3b079e3b1">reactionContributionMap</a></td></tr>
+<tr class="memdesc:aaad8a2e08769b629086133d3b079e3b1"><td class="mdescLeft">&#160;</td><td class="mdescRight">Map of reaction contributions for the current step.  <br /></td></tr>
+<tr class="separator:aaad8a2e08769b629086133d3b079e3b1"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
+<div class="textblock"><p>Immutable view of the current integration state passed to callbacks. </p>
+<p>Fields capture CVODE time/state, step size, thermodynamic state, the engine reference, and the list of network species used to interpret the state vector layout. </p>
+</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
+<a id="a04c4ce00c6a0a62ba6d1e6fb1a0a53be" name="a04c4ce00c6a0a62ba6d1e6fb1a0a53be"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a04c4ce00c6a0a62ba6d1e6fb1a0a53be">&#9670;&#160;</a></span>TimestepContext()</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">gridfire::solver::CVODESolverStrategy::TimestepContext::TimestepContext </td>
+          <td>(</td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>t</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const N_Vector &amp;&#160;</td>
+          <td class="paramname"><em>state</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>dt</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>last_step_time</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>t9</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">double&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>num_steps</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a> &amp;&#160;</td>
+          <td class="paramname"><em>engine</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::vector&lt; fourdst::atomic::Species &gt; &amp;&#160;</td>
+          <td class="paramname"><em>networkSpecies</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>currentConvergenceFailure</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">size_t&#160;</td>
+          <td class="paramname"><em>currentNonlinearIterations</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">const std::map&lt; fourdst::atomic::Species, std::unordered_map&lt; std::string, double &gt; &gt; &amp;&#160;</td>
+          <td class="paramname"><em>reactionContributionMap</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Construct a context snapshot. </p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="ae3c6320ce7a8f41c9ae36c42d62b4204" name="ae3c6320ce7a8f41c9ae36c42d62b4204"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#ae3c6320ce7a8f41c9ae36c42d62b4204">&#9670;&#160;</a></span>describe()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::vector&lt; std::tuple&lt; std::string, std::string &gt; &gt; gridfire::solver::CVODESolverStrategy::TimestepContext::describe </td>
+          <td>(</td>
+          <td class="paramname"></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">override</span><span class="mlabel">virtual</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Human-readable description of the context fields. </p>
+
+<p>Implements <a class="el" href="classgridfire_1_1solver_1_1SolverContextBase.html#a9cbef3cabc8524e542613ee50d8860c6">gridfire::solver::SolverContextBase</a>.</p>
+
+</div>
+</div>
+<h2 class="groupheader">Member Data Documentation</h2>
+<a id="adef40af49e162d2429db1030f6341d96" name="adef40af49e162d2429db1030f6341d96"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#adef40af49e162d2429db1030f6341d96">&#9670;&#160;</a></span>currentConvergenceFailures</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const size_t gridfire::solver::CVODESolverStrategy::TimestepContext::currentConvergenceFailures</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Total number of convergence failures. </p>
+
+</div>
+</div>
+<a id="aefa6b183bf963f6e01c5157b7c0f158a" name="aefa6b183bf963f6e01c5157b7c0f158a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aefa6b183bf963f6e01c5157b7c0f158a">&#9670;&#160;</a></span>currentNonlinearIterations</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const size_t gridfire::solver::CVODESolverStrategy::TimestepContext::currentNonlinearIterations</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Total number of non-linear iterations. </p>
+
+</div>
+</div>
+<a id="a6442d15673e6385bb6fdd11e1179c487" name="a6442d15673e6385bb6fdd11e1179c487"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a6442d15673e6385bb6fdd11e1179c487">&#9670;&#160;</a></span>dt</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const double gridfire::solver::CVODESolverStrategy::TimestepContext::dt</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Last step size [s]. </p>
+
+</div>
+</div>
+<a id="a5a457651dcb9d4a66ed219ddf7095313" name="a5a457651dcb9d4a66ed219ddf7095313"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a5a457651dcb9d4a66ed219ddf7095313">&#9670;&#160;</a></span>engine</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const <a class="el" href="classgridfire_1_1engine_1_1DynamicEngine.html">engine::DynamicEngine</a>&amp; gridfire::solver::CVODESolverStrategy::TimestepContext::engine</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Reference to the engine. </p>
+
+</div>
+</div>
+<a id="a4a92187c15b7bcb90adebecc87e1436a" name="a4a92187c15b7bcb90adebecc87e1436a"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4a92187c15b7bcb90adebecc87e1436a">&#9670;&#160;</a></span>last_step_time</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const double gridfire::solver::CVODESolverStrategy::TimestepContext::last_step_time</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Time at last callback [s]. </p>
+
+</div>
+</div>
+<a id="a75d7e32c9df3d8a047069fe2d64cd089" name="a75d7e32c9df3d8a047069fe2d64cd089"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a75d7e32c9df3d8a047069fe2d64cd089">&#9670;&#160;</a></span>networkSpecies</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::vector&lt;fourdst::atomic::Species&gt;&amp; gridfire::solver::CVODESolverStrategy::TimestepContext::networkSpecies</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Species layout. </p>
+
+</div>
+</div>
+<a id="a51e86d2721053055d8479662b864e367" name="a51e86d2721053055d8479662b864e367"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a51e86d2721053055d8479662b864e367">&#9670;&#160;</a></span>num_steps</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const size_t gridfire::solver::CVODESolverStrategy::TimestepContext::num_steps</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Number of CVODE steps taken so far. </p>
+
+</div>
+</div>
+<a id="aaad8a2e08769b629086133d3b079e3b1" name="aaad8a2e08769b629086133d3b079e3b1"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaad8a2e08769b629086133d3b079e3b1">&#9670;&#160;</a></span>reactionContributionMap</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const std::map&lt;fourdst::atomic::Species, std::unordered_map&lt;std::string, double&gt; &gt;&amp; gridfire::solver::CVODESolverStrategy::TimestepContext::reactionContributionMap</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Map of reaction contributions for the current step. </p>
+
+</div>
+</div>
+<a id="a4a25afbc9f8a907304992e144dfa3529" name="a4a25afbc9f8a907304992e144dfa3529"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a4a25afbc9f8a907304992e144dfa3529">&#9670;&#160;</a></span>rho</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const double gridfire::solver::CVODESolverStrategy::TimestepContext::rho</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Density [g cm^-3]. </p>
+
+</div>
+</div>
+<a id="aaae3c42b9172be4d501f022e67f5a6f6" name="aaae3c42b9172be4d501f022e67f5a6f6"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#aaae3c42b9172be4d501f022e67f5a6f6">&#9670;&#160;</a></span>state</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const N_Vector&amp; gridfire::solver::CVODESolverStrategy::TimestepContext::state</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Current CVODE state vector (N_Vector). </p>
+
+</div>
+</div>
+<a id="a0b39f0d207181840efacb64417b492ae" name="a0b39f0d207181840efacb64417b492ae"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a0b39f0d207181840efacb64417b492ae">&#9670;&#160;</a></span>t</h2>
+
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">const double gridfire::solver::CVODESolverStrategy::TimestepContext::t</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Current integration time [s]. </p>
+
+</div>
+</div>
+<a id="a25743a21ed801ed4288309f35dc9a289" name="a25743a21ed801ed4288309f35dc9a289"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a25743a21ed801ed4288309f35dc9a289">&#9670;&#160;</a></span>T9</h2>
+
+<div class="memitem">
+<div class="memproto">
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+          <td class="memname">const double gridfire::solver::CVODESolverStrategy::TimestepContext::T9</td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>Temperature in GK. </p>
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following files:<ul>
+<li>src/include/gridfire/solver/strategies/<a class="el" href="CVODE__solver__strategy_8h.html">CVODE_solver_strategy.h</a></li>
+<li>src/lib/solver/strategies/<a class="el" href="CVODE__solver__strategy_8cpp.html">CVODE_solver_strategy.cpp</a></li>
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+    [ "rho", "structgridfire_1_1solver_1_1CVODESolverStrategy_1_1TimestepContext.html#a4a25afbc9f8a907304992e144dfa3529", null ],
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+<div class="header">
+  <div class="summary">
+<a href="#pub-attribs">Public Attributes</a> &#124;
+<a href="structgridfire_1_1trigger_1_1TriggerResult-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">gridfire::trigger::TriggerResult Struct Reference</div></div>
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+<div class="contents">
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 </div><!--header-->
 <div class="contents">
+<div class="dynheader">
+Collaboration diagram for gridfire_mod::gridfire:</div>
+<div class="dyncontent">
+<div class="center"><iframe scrolling="no" frameborder="0" src="structgridfire__mod_1_1gridfire__coll__graph.svg" width="170" height="124"><p><b>This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead.</b></p></iframe></div>
+<center><span class="legend">[<a target="top" href="graph_legend.html">legend</a>]</span></center></div>
 <table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
 Public Member Functions</h2></td></tr>
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+<tr class="memitem:a72415e2f4ff6b74cbc38316a4df8792f" id="r_a72415e2f4ff6b74cbc38316a4df8792f"><td class="memItemLeft" align="right" valign="top">procedure&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire__mod_1_1gridfire.html#a72415e2f4ff6b74cbc38316a4df8792f">gff_init</a> (self)</td></tr>
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+<tr class="memitem:a2537a8b237e390fefea02ae2da46f851" id="r_a2537a8b237e390fefea02ae2da46f851"><td class="memItemLeft" align="right" valign="top">procedure&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structgridfire__mod_1_1gridfire.html#a2537a8b237e390fefea02ae2da46f851">setup_policy</a> (self, policy_name, abundances)</td></tr>
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 Public Attributes</h2></td></tr>
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+          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(in)&#160;</td>
+          <td class="paramname"><em>self</em>, </td>
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-          <td class="paramtype">real(c_double), dimension(:), intent(in)</td>          <td class="paramname"><span class="paramname"><em>y_in</em></span>, </td>
+          <td class="paramtype">real(c_double), dimension(:), intent(in)&#160;</td>
+          <td class="paramname"><em>y_in</em>, </td>
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           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), value</td>          <td class="paramname"><span class="paramname"><em>t</em></span>, </td>
+          <td class="paramtype">real(c_double), value&#160;</td>
+          <td class="paramname"><em>t</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), value</td>          <td class="paramname"><span class="paramname"><em>rho</em></span>, </td>
+          <td class="paramtype">real(c_double), value&#160;</td>
+          <td class="paramname"><em>rho</em>, </td>
         </tr>
         <tr>
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           <td></td>
-          <td class="paramtype">real(c_double), value</td>          <td class="paramname"><span class="paramname"><em>dt</em></span>, </td>
+          <td class="paramtype">real(c_double), value&#160;</td>
+          <td class="paramname"><em>dt</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), dimension(:), intent(out)</td>          <td class="paramname"><span class="paramname"><em>y_out</em></span>, </td>
+          <td class="paramtype">real(c_double), dimension(:), intent(out)&#160;</td>
+          <td class="paramname"><em>y_out</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), intent(out)</td>          <td class="paramname"><span class="paramname"><em>energy</em></span>, </td>
+          <td class="paramtype">real(c_double), intent(out)&#160;</td>
+          <td class="paramname"><em>energy</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), intent(out)</td>          <td class="paramname"><span class="paramname"><em>dedt</em></span>, </td>
+          <td class="paramtype">real(c_double), intent(out)&#160;</td>
+          <td class="paramname"><em>dedt</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), intent(out)</td>          <td class="paramname"><span class="paramname"><em>dedrho</em></span>, </td>
+          <td class="paramtype">real(c_double), intent(out)&#160;</td>
+          <td class="paramname"><em>dedrho</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), intent(out)</td>          <td class="paramname"><span class="paramname"><em>nu_e_loss</em></span>, </td>
+          <td class="paramtype">real(c_double), intent(out)&#160;</td>
+          <td class="paramname"><em>nu_e_loss</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), intent(out)</td>          <td class="paramname"><span class="paramname"><em>nu_flux</em></span>, </td>
+          <td class="paramtype">real(c_double), intent(out)&#160;</td>
+          <td class="paramname"><em>nu_flux</em>, </td>
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         <tr>
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           <td></td>
-          <td class="paramtype">real(c_double), intent(out)</td>          <td class="paramname"><span class="paramname"><em>mass_lost</em></span>, </td>
+          <td class="paramtype">real(c_double), intent(out)&#160;</td>
+          <td class="paramname"><em>mass_lost</em>, </td>
         </tr>
         <tr>
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           <td></td>
-          <td class="paramtype">integer, intent(out)</td>          <td class="paramname"><span class="paramname"><em>ierr</em></span>&#160;)</td>
+          <td class="paramtype">integer, intent(out)&#160;</td>
+          <td class="paramname"><em>ierr</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
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@@ -217,7 +233,8 @@ Public Attributes</h2></td></tr>
         <tr>
           <td class="memname">procedure gridfire_mod::gridfire::get_last_error </td>
           <td>(</td>
-          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(in)</td>          <td class="paramname"><span class="paramname"><em>self</em></span></td><td>)</td>
+          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(in)&#160;</td>
+          <td class="paramname"><em>self</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -234,7 +251,8 @@ Public Attributes</h2></td></tr>
         <tr>
           <td class="memname">procedure gridfire_mod::gridfire::gff_free </td>
           <td>(</td>
-          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(inout)</td>          <td class="paramname"><span class="paramname"><em>self</em></span></td><td>)</td>
+          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(inout)&#160;</td>
+          <td class="paramname"><em>self</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -251,7 +269,8 @@ Public Attributes</h2></td></tr>
         <tr>
           <td class="memname">procedure gridfire_mod::gridfire::gff_init </td>
           <td>(</td>
-          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(out)</td>          <td class="paramname"><span class="paramname"><em>self</em></span></td><td>)</td>
+          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(out)&#160;</td>
+          <td class="paramname"><em>self</em></td><td>)</td>
           <td></td>
         </tr>
       </table>
@@ -268,12 +287,19 @@ Public Attributes</h2></td></tr>
         <tr>
           <td class="memname">procedure gridfire_mod::gridfire::register_species </td>
           <td>(</td>
-          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(inout)</td>          <td class="paramname"><span class="paramname"><em>self</em></span>, </td>
+          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(inout)&#160;</td>
+          <td class="paramname"><em>self</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">character(len=*), dimension(:), intent(in)</td>          <td class="paramname"><span class="paramname"><em>species_list</em></span>&#160;)</td>
+          <td class="paramtype">character(len=*), dimension(:), intent(in)&#160;</td>
+          <td class="paramname"><em>species_list</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -289,17 +315,25 @@ Public Attributes</h2></td></tr>
         <tr>
           <td class="memname">procedure gridfire_mod::gridfire::setup_policy </td>
           <td>(</td>
-          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(in)</td>          <td class="paramname"><span class="paramname"><em>self</em></span>, </td>
+          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(in)&#160;</td>
+          <td class="paramname"><em>self</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">character(len=*), intent(in)</td>          <td class="paramname"><span class="paramname"><em>policy_name</em></span>, </td>
+          <td class="paramtype">character(len=*), intent(in)&#160;</td>
+          <td class="paramname"><em>policy_name</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">real(c_double), dimension(:), intent(in)</td>          <td class="paramname"><span class="paramname"><em>abundances</em></span>&#160;)</td>
+          <td class="paramtype">real(c_double), dimension(:), intent(in)&#160;</td>
+          <td class="paramname"><em>abundances</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
       </table>
 </div><div class="memdoc">
@@ -315,12 +349,19 @@ Public Attributes</h2></td></tr>
         <tr>
           <td class="memname">procedure gridfire_mod::gridfire::setup_solver </td>
           <td>(</td>
-          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(in)</td>          <td class="paramname"><span class="paramname"><em>self</em></span>, </td>
+          <td class="paramtype">class(<a class="el" href="structgridfire__mod_1_1gridfire.html">gridfire</a>), intent(in)&#160;</td>
+          <td class="paramname"><em>self</em>, </td>
         </tr>
         <tr>
           <td class="paramkey"></td>
           <td></td>
-          <td class="paramtype">character(len=*), intent(in)</td>          <td class="paramname"><span class="paramname"><em>solver_name</em></span>&#160;)</td>
+          <td class="paramtype">character(len=*), intent(in)&#160;</td>
+          <td class="paramname"><em>solver_name</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
         </tr>
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@@ -365,7 +406,7 @@ Public Attributes</h2></td></tr>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/structstd_1_1formatter_3_01gridfire_1_1engine_1_1NetworkJacobian_01_4-members.html b/docs/html/structstd_1_1formatter_3_01gridfire_1_1engine_1_1NetworkJacobian_01_4-members.html
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<div class="header">
+  <div class="headertitle"><div class="title">std::formatter&lt; gridfire::engine::NetworkJacobian &gt; Member List</div></div>
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+<p>This is the complete list of members for <a class="el" href="structstd_1_1formatter_3_01gridfire_1_1engine_1_1NetworkJacobian_01_4.html">std::formatter&lt; gridfire::engine::NetworkJacobian &gt;</a>, including all inherited members.</p>
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diff --git a/docs/html/structstd_1_1formatter_3_01gridfire_1_1engine_1_1NetworkJacobian_01_4.html b/docs/html/structstd_1_1formatter_3_01gridfire_1_1engine_1_1NetworkJacobian_01_4.html
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+<div class="SRStatus" id="NoMatches">No Matches</div>
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+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-static-methods">Static Public Member Functions</a> &#124;
+<a href="structstd_1_1formatter_3_01gridfire_1_1engine_1_1NetworkJacobian_01_4-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">std::formatter&lt; gridfire::engine::NetworkJacobian &gt; Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;jacobian_format.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-static-methods" name="pub-static-methods"></a>
+Static Public Member Functions</h2></td></tr>
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+<tr class="separator:a59d2a4484bd158d2242776b75cded831"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a59d2a4484bd158d2242776b75cded831" name="a59d2a4484bd158d2242776b75cded831"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a59d2a4484bd158d2242776b75cded831">&#9670;&#160;</a></span>format()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">static auto std::formatter&lt; <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a> &gt;::format </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a> &amp;&#160;</td>
+          <td class="paramname"><em>obj</em>, </td>
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+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">std::format_context &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em>&#160;</td>
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+        <tr>
+          <td></td>
+          <td>)</td>
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+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">static</span></span>  </td>
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+
+</div>
+</div>
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+<h2 class="memtitle"><span class="permalink"><a href="#a477ce36e65137d3c94d2cf3c1e8752f9">&#9670;&#160;</a></span>parse()</h2>
+
+<div class="memitem">
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+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
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+          <td class="memname">static constexpr auto std::formatter&lt; <a class="el" href="classgridfire_1_1engine_1_1NetworkJacobian.html">gridfire::engine::NetworkJacobian</a> &gt;::parse </td>
+          <td>(</td>
+          <td class="paramtype">const std::format_parse_context &amp;&#160;</td>
+          <td class="paramname"><em>ctx</em></td><td>)</td>
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+  </td>
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+  </tr>
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+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/utils/formatters/<a class="el" href="jacobian__format_8h.html">jacobian_format.h</a></li>
+</ul>
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+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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+</html>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
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+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
+$(document).ready(function(){initNavTree('structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1TableAxes_01_4.html',''); initResizable(); });
+/* @license-end */
+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
+     onkeydown="return searchBox.OnSearchSelectKey(event)">
+</div>
+
+<!-- iframe showing the search results (closed by default) -->
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+<div id="MSearchResults">
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+<div id="SRResults"></div>
+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1TableAxes_01_4-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">std::hash&lt; gridfire::rates::weak::TableAxes &gt; Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p><code>#include &lt;weak_types.h&gt;</code></p>
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
+Public Member Functions</h2></td></tr>
+<tr class="memitem:abab92065d884b95cdddcc2f8f6fdd490" id="r_abab92065d884b95cdddcc2f8f6fdd490"><td class="memItemLeft" align="right" valign="top">std::size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1TableAxes_01_4.html#abab92065d884b95cdddcc2f8f6fdd490">operator()</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">gridfire::rates::weak::TableAxes</a> t) const noexcept</td></tr>
+<tr class="separator:abab92065d884b95cdddcc2f8f6fdd490"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="abab92065d884b95cdddcc2f8f6fdd490" name="abab92065d884b95cdddcc2f8f6fdd490"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#abab92065d884b95cdddcc2f8f6fdd490">&#9670;&#160;</a></span>operator()()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">std::size_t std::hash&lt; <a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">gridfire::rates::weak::TableAxes</a> &gt;::operator() </td>
+          <td>(</td>
+          <td class="paramtype"><a class="el" href="namespacegridfire_1_1rates_1_1weak.html#a5e6ecdf02b9748cf1b0a15a5cc1b34ae">gridfire::rates::weak::TableAxes</a>&#160;</td>
+          <td class="paramname"><em>t</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">noexcept</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/include/gridfire/reaction/weak/<a class="el" href="weak__types_8h.html">weak_types.h</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacestd.html">std</a></li><li class="navelem"><a class="el" href="structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1TableAxes_01_4.html">hash&lt; gridfire::rates::weak::TableAxes &gt;</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1TableAxes_01_4.js b/docs/html/structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1TableAxes_01_4.js
new file mode 100644
index 00000000..ac326b1d
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+++ b/docs/html/structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1TableAxes_01_4.js
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+var structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1TableAxes_01_4 =
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
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+<script type="text/javascript" src="dynsections.js"></script>
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+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
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+ </tbody>
+</table>
+</div>
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+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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+</script>
+<div id="doc-content">
+<!-- window showing the filter options -->
+<div id="MSearchSelectWindow"
+     onmouseover="return searchBox.OnSearchSelectShow()"
+     onmouseout="return searchBox.OnSearchSelectHide()"
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+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="headertitle"><div class="title">std::hash&lt; gridfire::reaction::ReactionSet &gt; Member List</div></div>
+</div><!--header-->
+<div class="contents">
+
+<p>This is the complete list of members for <a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1ReactionSet_01_4.html">std::hash&lt; gridfire::reaction::ReactionSet &gt;</a>, including all inherited members.</p>
+<table class="directory">
+  <tr class="even"><td class="entry"><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1ReactionSet_01_4.html#a32b976b3e3e4e0403c1295f9b467e921">operator()</a>(const gridfire::reaction::ReactionSet &amp;s) const noexcept</td><td class="entry"><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1ReactionSet_01_4.html">std::hash&lt; gridfire::reaction::ReactionSet &gt;</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+</table></div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
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diff --git a/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1ReactionSet_01_4.html b/docs/html/structstd_1_1hash_3_01gridfire_1_1reaction_1_1ReactionSet_01_4.html
new file mode 100644
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+<meta name="generator" content="Doxygen 1.9.8"/>
+<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<title>GridFire: std::hash&lt; gridfire::reaction::ReactionSet &gt; Struct Reference</title>
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+<script type="text/javascript" src="jquery.js"></script>
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+<script type="text/javascript" src="navtreedata.js"></script>
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+<script type="text/javascript" src="search/search.js"></script>
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+<link href="doxygen-awesome.css" rel="stylesheet" type="text/css"/>
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+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+<div id="titlearea">
+<table cellspacing="0" cellpadding="0">
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+ <tr id="projectrow">
+  <td id="projectalign">
+   <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.1_rc2</span>
+   </div>
+   <div id="projectbrief">General Purpose Nuclear Network</div>
+  </td>
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+</table>
+</div>
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+<script type="text/javascript">
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+/* @license-end */
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+<script type="text/javascript" src="menudata.js"></script>
+<script type="text/javascript" src="menu.js"></script>
+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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+<script type="text/javascript">
+/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
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+/* @license-end */
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+<div id="MSearchSelectWindow"
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+<div id="SRIndex">
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+<div class="SRStatus" id="Loading">Loading...</div>
+<div class="SRStatus" id="Searching">Searching...</div>
+<div class="SRStatus" id="NoMatches">No Matches</div>
+</div>
+</div>
+</div>
+</div>
+
+<div class="header">
+  <div class="summary">
+<a href="#pub-methods">Public Member Functions</a> &#124;
+<a href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1ReactionSet_01_4-members.html">List of all members</a>  </div>
+  <div class="headertitle"><div class="title">std::hash&lt; gridfire::reaction::ReactionSet &gt; Struct Reference</div></div>
+</div><!--header-->
+<div class="contents">
+<table class="memberdecls">
+<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
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+<tr class="memitem:a32b976b3e3e4e0403c1295f9b467e921" id="r_a32b976b3e3e4e0403c1295f9b467e921"><td class="memItemLeft" align="right" valign="top">size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1ReactionSet_01_4.html#a32b976b3e3e4e0403c1295f9b467e921">operator()</a> (const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a> &amp;s) const noexcept</td></tr>
+<tr class="separator:a32b976b3e3e4e0403c1295f9b467e921"><td class="memSeparator" colspan="2">&#160;</td></tr>
+</table>
+<h2 class="groupheader">Member Function Documentation</h2>
+<a id="a32b976b3e3e4e0403c1295f9b467e921" name="a32b976b3e3e4e0403c1295f9b467e921"></a>
+<h2 class="memtitle"><span class="permalink"><a href="#a32b976b3e3e4e0403c1295f9b467e921">&#9670;&#160;</a></span>operator()()</h2>
+
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
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+          <td class="memname">size_t std::hash&lt; <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a> &gt;::operator() </td>
+          <td>(</td>
+          <td class="paramtype">const <a class="el" href="classgridfire_1_1reaction_1_1ReactionSet.html">gridfire::reaction::ReactionSet</a> &amp;&#160;</td>
+          <td class="paramname"><em>s</em></td><td>)</td>
+          <td> const</td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">inline</span><span class="mlabel">noexcept</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+</div>
+</div>
+<hr/>The documentation for this struct was generated from the following file:<ul>
+<li>src/lib/reaction/<a class="el" href="reaction_8cpp.html">reaction.cpp</a></li>
+</ul>
+</div><!-- contents -->
+</div><!-- doc-content -->
+<!-- start footer part -->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    <li class="navelem"><a class="el" href="namespacestd.html">std</a></li><li class="navelem"><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1ReactionSet_01_4.html">hash&lt; gridfire::reaction::ReactionSet &gt;</a></li>
+    <li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.8 </li>
+  </ul>
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+[
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+<meta name="viewport" content="width=device-width, initial-scale=1"/>
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+<link href="tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="jquery.js"></script>
+<script type="text/javascript" src="dynsections.js"></script>
+<link href="navtree.css" rel="stylesheet" type="text/css"/>
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+<script type="text/javascript" src="navtreedata.js"></script>
+<script type="text/javascript" src="navtree.js"></script>
+<link href="search/search.css" rel="stylesheet" type="text/css"/>
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+<script type="text/javascript" src="search/search.js"></script>
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+  <div class="headertitle"><div class="title">std::hash&lt; gridfire::reaction::Reaction &gt; Struct Reference</div></div>
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diff --git a/docs/html/trigger_8h.html b/docs/html/trigger_8h.html
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
+<tr class="memitem:namespacegridfire" id="r_namespacegridfire"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a></td></tr>
+<tr class="memitem:namespacegridfire_1_1trigger" id="r_namespacegridfire_1_1trigger"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1trigger.html">gridfire::trigger</a></td></tr>
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 <a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
 <div class="textblock"><p>Structured explanation node for trigger evaluations. </p>
 <p>TriggerResult represents a tree describing why a trigger evaluated to true/false. Each node contains a boolean value, a short name, a human-readable description, and optional nested causes for composite triggers (e.g., AND/OR/NOT).</p>
 <dl class="section user"><dt>Example</dt><dd><div class="fragment"><div class="line"><span class="comment">// Produce a result and pretty-print it</span></div>
-<div class="line"><a class="code hl_struct" href="structgridfire_1_1trigger_1_1_trigger_result.html">gridfire::trigger::TriggerResult</a> r{<span class="stringliteral">&quot;A&gt;5&quot;</span>, <span class="stringliteral">&quot;Threshold passed&quot;</span>, <span class="keyword">true</span>, {}};</div>
+<div class="line"><a class="code hl_struct" href="structgridfire_1_1trigger_1_1TriggerResult.html">gridfire::trigger::TriggerResult</a> r{<span class="stringliteral">&quot;A&gt;5&quot;</span>, <span class="stringliteral">&quot;Threshold passed&quot;</span>, <span class="keyword">true</span>, {}};</div>
 <div class="line"><span class="comment">// See procedures/trigger_pprint.h for printWhy()</span></div>
 <div class="line"><span class="comment">// gridfire::trigger::printWhy(r);</span></div>
-<div class="ttc" id="astructgridfire_1_1trigger_1_1_trigger_result_html"><div class="ttname"><a href="structgridfire_1_1trigger_1_1_trigger_result.html">gridfire::trigger::TriggerResult</a></div><div class="ttdef"><b>Definition</b> trigger_result.h:23</div></div>
+<div class="ttc" id="astructgridfire_1_1trigger_1_1TriggerResult_html"><div class="ttname"><a href="structgridfire_1_1trigger_1_1TriggerResult.html">gridfire::trigger::TriggerResult</a></div><div class="ttdef"><b>Definition</b> trigger_result.h:23</div></div>
 </div><!-- fragment --> </dd></dl>
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+    [ "gridfire::rates::weak::WeakReaction::AtomicWeakRate", "classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate.html", "classgridfire_1_1rates_1_1weak_1_1WeakReaction_1_1AtomicWeakRate" ],
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diff --git a/docs/html/weak__interpolator_8h.js b/docs/html/weak__interpolator_8h.js
index c7a0dfb5..96811e3b 100644
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