perf(graph_engine): finished sparsity system for jacobian, major preformance win, roughly 20x faster

essentially all callers can now inform the graph engine about which species they hold active and graph engine then uses those to define a sparsity pattern and only calculate the jacobian along that sparsity pattern

src/include/gridfire/engine/engine_abstract.h

@@ -157,14 +157,19 @@ namespace gridfire {
             double rho
         ) const = 0;
 
+        virtual void generateJacobianMatrix(
+            const fourdst::composition::Composition& comp,
+            double T9,
+            double rho,
+            const std::vector<fourdst::atomic::Species>& activeSpecies
+        ) const = 0;
+
         virtual void generateJacobianMatrix(
             const fourdst::composition::Composition& comp,
             double T9,
             double rho,
             const SparsityPattern& sparsityPattern
-        ) const {
-            throw std::logic_error("Sparsity pattern not supported by this engine.");
-        }
+        ) const = 0;
 
         /**
          * @brief Get an entry from the previously generated Jacobian matrix.