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feat(weak): major weak rate progress

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Major weak rate progress which includes: A refactor of many of the public interfaces for GridFire Engines to use composition objects as opposed to raw abundance vectors. This helps prevent index mismatch errors. Further, the weak reaction class has been expanded with the majority of an implimentation, including an atomic_base derived class to allow for proper auto diff tracking of the interpolated table results. Some additional changes are that the version of fourdst and libcomposition have been bumped to versions with smarter caching of intermediate vectors and a few bug fixes.
This commit is contained in:
Emily Boudreaux
2025-10-07 15:16:03 -04:00
parent 4f1c260444
commit 8a0b5b2c36
53 changed files with 2310 additions and 1759 deletions
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10
src/include/gridfire/solver/strategies/CVODE_solver_strategy.h
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@@ -55,7 +55,7 @@ namespace gridfire::solver {
void set_callback(const std::any &callback) override;
bool get_stdout_logging_enabled() const;
[[nodiscard]] bool get_stdout_logging_enabled() const;
void set_stdout_logging_enabled(const bool value);
@@ -69,14 +69,14 @@ namespace gridfire::solver {
const double last_step_time;
const double T9;
const double rho;
const int num_steps;
const size_t num_steps;
const DynamicEngine& engine;
const std::vector<fourdst::atomic::Species>& networkSpecies;
// Constructor
TimestepContext(
double t, const N_Vector& state, double dt, double last_step_time,
double t9, double rho, int num_steps, const DynamicEngine& engine,
double t9, double rho, size_t num_steps, const DynamicEngine& engine,
const std::vector<fourdst::atomic::Species>& networkSpecies
);
@@ -104,8 +104,8 @@ namespace gridfire::solver {
};
private:
Config& m_config = Config::getInstance();
quill::Logger* m_logger = LogManager::getInstance().getLogger("log");
fourdst::config::Config& m_config = fourdst::config::Config::getInstance();
quill::Logger* m_logger = fourdst::logging::LogManager::getInstance().getLogger("log");
static int cvode_rhs_wrapper(sunrealtype t, N_Vector y, N_Vector ydot, void *user_data);
static int cvode_jac_wrapper(sunrealtype t, N_Vector y, N_Vector ydot, SUNMatrix J, void *user_data, N_Vector tmp1, N_Vector tmp2, N_Vector tmp3);