refactor(serif): refactored entire codebase into serif and sub namespaces

src/network/public/approx8.h

@@ -53,7 +53,7 @@ typedef boost::numeric::ublas::matrix< double > matrix_type;
  */
 typedef std::array<double,7> vec7;
 
-namespace nnApprox8{
+namespace serif::network::approx8{
 
     using namespace boost::numeric::odeint;
 
@@ -294,14 +294,14 @@ namespace nnApprox8{
      * @class Approx8Network
      * @brief Class for the Approx8 nuclear reaction network.
      */
-    class Approx8Network : public nuclearNetwork::Network {
+    class Approx8Network : public Network {
     public:
         /**
          * @brief Evaluates the nuclear network.
          * @param netIn Input parameters for the network.
          * @return Output results from the network.
          */
-        virtual nuclearNetwork::NetOut evaluate(const nuclearNetwork::NetIn &netIn);
+        virtual NetOut evaluate(const NetIn &netIn);
 
         /**
          * @brief Sets whether the solver should use a stiff method.
@@ -325,7 +325,7 @@ namespace nnApprox8{
          * @param netIn Input parameters for the network.
          * @return Internal state vector.
          */
-        vector_type convert_netIn(const nuclearNetwork::NetIn &netIn);
+        vector_type convert_netIn(const NetIn &netIn);
     };
 
 } // namespace nnApprox8

src/network/public/network.h

@@ -26,7 +26,7 @@
 #include "config.h"
 #include "quill/Logger.h"
 
-namespace nuclearNetwork {
+namespace serif::network {
 
     /**
      * @struct NetIn
@@ -102,8 +102,8 @@ namespace nuclearNetwork {
             virtual NetOut evaluate(const NetIn &netIn);
 
         protected:
-            Config& m_config; ///< Configuration instance
-            Probe::LogManager& m_logManager; ///< Log manager instance
+            serif::config::Config& m_config; ///< Configuration instance
+            serif::probe::LogManager& m_logManager; ///< Log manager instance
             quill::Logger* m_logger; ///< Logger instance
     };