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refactor(.gitignore): removed html/ from .gitignore

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Emily Boudreaux
2025-07-01 11:40:51 -04:00
parent 0c16e81e98
commit 7df6f60912
197 changed files with 6248 additions and 4744 deletions
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docs/html/namespacegridfire.html
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@@ -115,12 +115,18 @@ $(function(){initNavTree('namespacegridfire.html',''); initResizable(true); });
Namespaces</h2></td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1approx8.html">approx8</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1io.html">io</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaclib.html">reaclib</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1reaction.html">reaction</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1screening.html">screening</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1solver.html">solver</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire_1_1utils.html">utils</a></td></tr>
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</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
Classes</h2></td></tr>
@@ -136,6 +142,8 @@ Classes</h2></td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_engine_view.html">EngineView</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Abstract base class for a "view" of a reaction network engine. <a href="classgridfire_1_1_engine_view.html#details">More...</a><br /></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">FileDefinedEngineView</a></td></tr>
<tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_graph_engine.html">GraphEngine</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">A reaction network engine that uses a graph-based representation. <a href="classgridfire_1_1_graph_engine.html#details">More...</a><br /></td></tr>
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@@ -174,7 +182,7 @@ Enumerations</h2></td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="func-members" name="func-members"></a>
Functions</h2></td></tr>
<tr class="memitem:aa77f83539d9ae90e3bf541309bd9c83a" id="r_aa77f83539d9ae90e3bf541309bd9c83a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction_set.html">reaction::LogicalReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa77f83539d9ae90e3bf541309bd9c83a">build_reaclib_nuclear_network</a> (const fourdst::composition::Composition &amp;composition, bool reverse)</td></tr>
<tr class="memitem:aa77f83539d9ae90e3bf541309bd9c83a" id="r_aa77f83539d9ae90e3bf541309bd9c83a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#aa77f83539d9ae90e3bf541309bd9c83a">build_reaclib_nuclear_network</a> (const fourdst::composition::Composition &amp;composition, bool reverse)</td></tr>
<tr class="separator:aa77f83539d9ae90e3bf541309bd9c83a"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a8b245f261cd8d1711ae8d593b054cf98" id="r_a8b245f261cd8d1711ae8d593b054cf98"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a8b245f261cd8d1711ae8d593b054cf98">trim_whitespace</a> (const std::string &amp;str)</td></tr>
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@@ -209,7 +217,7 @@ Variables</h2></td></tr>
<p>Alias for CppAD AD type for double precision. </p>
<p>This alias simplifies the use of the CppAD automatic differentiation type. </p>
<p class="definition">Definition at line <a class="el" href="engine__graph_8h_source.html#l00031">31</a> of file <a class="el" href="engine__graph_8h_source.html">engine_graph.h</a>.</p>
<p class="definition">Definition at line <a class="el" href="engine__graph_8h_source.html#l00034">34</a> of file <a class="el" href="engine__graph_8h_source.html">engine_graph.h</a>.</p>
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@@ -245,7 +253,7 @@ Variables</h2></td></tr>
<div class="memproto">
<table class="memname">
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<td class="memname"><a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction_set.html">reaction::LogicalReactionSet</a> gridfire::build_reaclib_nuclear_network </td>
<td class="memname"><a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> gridfire::build_reaclib_nuclear_network </td>
<td>(</td>
<td class="paramtype">const fourdst::composition::Composition &amp;</td> <td class="paramname"><span class="paramname"><em>composition</em></span>, </td>
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@@ -336,7 +344,7 @@ Variables</h2></td></tr>
<p>Minimum abundance threshold below which species are ignored. </p>
<p>Species with abundances below this threshold are treated as zero in reaction rate calculations. This helps to improve performance by avoiding unnecessary calculations for trace species. </p>
<p class="definition">Definition at line <a class="el" href="engine__graph_8h_source.html#l00053">53</a> of file <a class="el" href="engine__graph_8h_source.html">engine_graph.h</a>.</p>
<p class="definition">Definition at line <a class="el" href="engine__graph_8h_source.html#l00056">56</a> of file <a class="el" href="engine__graph_8h_source.html">engine_graph.h</a>.</p>
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@@ -363,7 +371,7 @@ Variables</h2></td></tr>
<p>Minimum density threshold below which reactions are ignored. </p>
<p>Reactions are not calculated if the density falls below this threshold. This helps to improve performance by avoiding unnecessary calculations in very low-density regimes. </p>
<p class="definition">Definition at line <a class="el" href="engine__graph_8h_source.html#l00044">44</a> of file <a class="el" href="engine__graph_8h_source.html">engine_graph.h</a>.</p>
<p class="definition">Definition at line <a class="el" href="engine__graph_8h_source.html#l00047">47</a> of file <a class="el" href="engine__graph_8h_source.html">engine_graph.h</a>.</p>
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@@ -390,7 +398,7 @@ Variables</h2></td></tr>
<p>Minimum value for Jacobian matrix entries. </p>
<p>Jacobian matrix entries with absolute values below this threshold are treated as zero to maintain sparsity and improve performance. </p>
<p class="definition">Definition at line <a class="el" href="engine__graph_8h_source.html#l00061">61</a> of file <a class="el" href="engine__graph_8h_source.html">engine_graph.h</a>.</p>
<p class="definition">Definition at line <a class="el" href="engine__graph_8h_source.html#l00064">64</a> of file <a class="el" href="engine__graph_8h_source.html">engine_graph.h</a>.</p>
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