docs(docs): rebuilt docs

This commit is contained in:
2025-11-04 14:04:26 -05:00
parent e87206a4a3
commit 77e6a918a5
710 changed files with 14858 additions and 5874 deletions

View File

@@ -18,10 +18,10 @@ var searchData=
['scripts_15',['Install Scripts',['../index.html#autotoc_md15',1,'']]],
['secondorder_16',['SecondOrder',['../namespacegridfire.html#a0210bd2e07538932135a56b62b8ddb57a264572d66aed5373d19dc80c7cde1f46',1,'gridfire']]],
['seed_5fspecies_17',['seed_species',['../structgridfire_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_group.html#af2d7e09d940e0fb3ca24a4bc8ec01031',1,'gridfire::MultiscalePartitioningEngineView::QSEGroup']]],
['selectpartitionfunction_18',['selectPartitionFunction',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a44325e313db7f8f901c0dd5d84d4845b',1,'gridfire::partition::CompositePartitionFunction']]],
['selectpartitionfunction_18',['selectPartitionFunction',['../classgridfire_1_1partition_1_1_composite_partition_function.html#a32f397abf9e9ace9f0c721e4e14eb60b',1,'gridfire::partition::CompositePartitionFunction']]],
['selectscreeningmodel_19',['selectScreeningModel',['../namespacegridfire_1_1screening.html#a6ca8556d27ac373e176f5b23437c416e',1,'gridfire::screening']]],
['set_5fcallback_20',['set_callback',['../classgridfire_1_1solver_1_1_network_solver_strategy.html#a4d97ee85933d5e5f90d4194bb021a1dc',1,'gridfire::solver::NetworkSolverStrategy::set_callback()'],['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a77638ef3d2279009e5a57bbd3f0eb63b',1,'gridfire::solver::CVODESolverStrategy::set_callback()'],['../class_py_dynamic_network_solver_strategy.html#a112a7babc03858a69d6994a7155370d3',1,'PyDynamicNetworkSolverStrategy::set_callback()']]],
['set_5fstdout_5flogging_5fenabled_21',['set_stdout_logging_enabled',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a46dacb6eb075f2aadac0e56972deeaa3',1,'gridfire::solver::CVODESolverStrategy']]],
['set_5fstdout_5flogging_5fenabled_21',['set_stdout_logging_enabled',['../classgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy.html#a9857665a1198e24aac6add02afc6e306',1,'gridfire::solver::CVODESolverStrategy']]],
['setformat_22',['setFormat',['../classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4',1,'gridfire::Network']]],
['setnetworkreactions_23',['setNetworkReactions',['../classgridfire_1_1_dynamic_engine.html#a49025489901e22a20cdf99b455ff2ff0',1,'gridfire::DynamicEngine::setNetworkReactions()'],['../classgridfire_1_1_graph_engine.html#a52288e2629609c8438a3c9bc3f910016',1,'gridfire::GraphEngine::setNetworkReactions()'],['../classgridfire_1_1_adaptive_engine_view.html#adedc8547568d643473bdfcc86040b488',1,'gridfire::AdaptiveEngineView::setNetworkReactions()'],['../classgridfire_1_1_defined_engine_view.html#a655e74357cce822c4508069a3bcac2c9',1,'gridfire::DefinedEngineView::setNetworkReactions()'],['../classgridfire_1_1_multiscale_partitioning_engine_view.html#af99f5e4871808188d00379c1c35868fe',1,'gridfire::MultiscalePartitioningEngineView::setNetworkReactions()'],['../class_py_dynamic_engine.html#af469cba3be850d53f659ec173f0eb4e4',1,'PyDynamicEngine::setNetworkReactions()']]],
['setprecomputation_24',['setPrecomputation',['../classgridfire_1_1_graph_engine.html#a6c5410878496abc349ba30b691cdf0f1',1,'gridfire::GraphEngine']]],
@@ -40,7 +40,7 @@ var searchData=
['solver_2eh_37',['solver.h',['../solver_8h.html',1,'']]],
['solver_5finstance_38',['solver_instance',['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_c_v_o_d_e_user_data.html#ad7f3eb9caae25ef25357c41c23d6b392',1,'gridfire::solver::CVODESolverStrategy::CVODEUserData']]],
['solver_5finterfaces_2eh_39',['solver_interfaces.h',['../solver__interfaces_8h.html',1,'']]],
['solvercontextbase_40',['SolverContextBase',['../structgridfire_1_1solver_1_1_solver_context_base.html',1,'gridfire::solver']]],
['solvercontextbase_40',['SolverContextBase',['../classgridfire_1_1solver_1_1_solver_context_base.html',1,'gridfire::solver']]],
['solverplugininterface_41',['SolverPluginInterface',['../class_solver_plugin_interface.html',1,'']]],
['source_42',['1.2 Development from Source',['../md_docs_2static_2usage.html#autotoc_md62',1,'']]],
['source_43',['source',['../index.html#autotoc_md6',1,'']]],
@@ -50,25 +50,29 @@ var searchData=
['sparsitypattern_47',['SparsityPattern',['../namespacegridfire.html#a898dfe22579e649935645cbd6f073178',1,'gridfire']]],
['species_5fnot_5ffound_48',['SPECIES_NOT_FOUND',['../namespacegridfire_1_1rates_1_1weak.html#a15ca7b1a1951c131fddb9eb011d59550a3659baf2b06bba6c02bad8316d517761',1,'gridfire::rates::weak']]],
['speedoflight_49',['speedOfLight',['../structgridfire_1_1rates_1_1weak_1_1_weak_reaction_1_1constants.html#a016c3e02f622e21073f9110707177b76',1,'gridfire::rates::weak::WeakReaction::constants']]],
['stale_50',['STALE',['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca4d855a061b3066dc14a3b12ed26b5456',1,'gridfire::expectations']]],
['staleengineerror_51',['StaleEngineError',['../classgridfire_1_1exceptions_1_1_stale_engine_error.html',1,'gridfire::exceptions::StaleEngineError'],['../structgridfire_1_1expectations_1_1_stale_engine_error.html',1,'gridfire::expectations::StaleEngineError'],['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#a6672e4c3f42260bba25d78e14ebd5a50',1,'gridfire::exceptions::StaleEngineError::StaleEngineError()'],['../structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10',1,'gridfire::expectations::StaleEngineError::StaleEngineError()']]],
['staleengineerrortypes_52',['StaleEngineErrorTypes',['../namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7',1,'gridfire::expectations']]],
['staleenginetrigger_53',['StaleEngineTrigger',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html',1,'gridfire::exceptions::StaleEngineTrigger'],['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#afb50f1694a806e8bcaf99111d99aeb5d',1,'gridfire::exceptions::StaleEngineTrigger::StaleEngineTrigger()']]],
['staletype_54',['staleType',['../structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590',1,'gridfire::expectations::StaleEngineError']]],
['state_55',['state',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html',1,'gridfire::exceptions::StaleEngineTrigger::state'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#aaae3c42b9172be4d501f022e67f5a6f6',1,'gridfire::solver::CVODESolverStrategy::TimestepContext::state']]],
['status_56',['status',['../structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d',1,'gridfire::PrimingReport']]],
['std_57',['std',['../namespacestd.html',1,'']]],
['step_20by_20step_20example_58',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md66',1,'']]],
['step_20example_59',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md66',1,'']]],
['stepderivatives_60',['StepDerivatives',['../structgridfire_1_1_step_derivatives.html',1,'gridfire::StepDerivatives< T >'],['../structgridfire_1_1_step_derivatives.html#a26deeb236e77eddb0119ad368a5d8f1c',1,'gridfire::StepDerivatives::StepDerivatives()']]],
['stoichiometric_5fcoefficients_61',['stoichiometric_coefficients',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c',1,'gridfire::GraphEngine::PrecomputedReaction']]],
['stoichiometry_62',['stoichiometry',['../classgridfire_1_1reaction_1_1_reaction.html#ad49f4cad024db72c966d949c75f1ce4d',1,'gridfire::reaction::Reaction::stoichiometry() const =0'],['../classgridfire_1_1reaction_1_1_reaction.html#ab7888b57507d6d27de6e5fcaea40fff5',1,'gridfire::reaction::Reaction::stoichiometry(const fourdst::atomic::Species &species) const =0'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a57b2695d152360a6ba08776cc760e3a1',1,'gridfire::reaction::ReaclibReaction::stoichiometry(const fourdst::atomic::Species &species) const override'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0f629cbfe95dc5643b5e3724be0db2f9',1,'gridfire::reaction::ReaclibReaction::stoichiometry() const override'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a8bf7dc26d9f1375625df99bceba08a44',1,'gridfire::rates::weak::WeakReaction::stoichiometry() const override'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1f4acfdb39bb861aaee9f3f28cfc406e',1,'gridfire::rates::weak::WeakReaction::stoichiometry(const fourdst::atomic::Species &species) const override'],['../classgridfire_1_1_reaction.html#a55b7f61d9bde45f2ca485c1b07a05950',1,'gridfire::Reaction::stoichiometry() const=0'],['../classgridfire_1_1_reaction.html#af0a893603aa88f7d7d205b9b969af487',1,'gridfire::Reaction::stoichiometry(const fourdst::atomic::Species &species) const=0']]],
['strategies_63',['Numerical Solver Strategies',['../index.html#autotoc_md36',1,'']]],
['stringtobasepartitiontype_64',['stringToBasePartitionType',['../namespacegridfire_1_1partition.html#a84de6308486d35ce8bc1a9dea52dfa4a',1,'gridfire::partition']]],
['success_65',['success',['../structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3',1,'gridfire::PrimingReport']]],
['sum_5fproduct_66',['sum_product',['../namespacegridfire_1_1approx8.html#aafd24448743672021dd4507316060817',1,'gridfire::approx8']]],
['supports_67',['supports',['../classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c',1,'gridfire::partition::CompositePartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5',1,'gridfire::partition::PartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd',1,'gridfire::partition::GroundStatePartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5',1,'gridfire::partition::RauscherThielemannPartitionFunction::supports()'],['../class_py_partition_function.html#a0f288a01a3ed7fb92fff5d9fd7d56aa8',1,'PyPartitionFunction::supports()']]],
['symmetry_5ffactor_68',['symmetry_factor',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ac42504e868c0b9fd9ac9a405ea739f0e',1,'gridfire::GraphEngine::PrecomputedReaction']]],
['syncinternalmaps_69',['syncInternalMaps',['../classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f',1,'gridfire::GraphEngine']]],
['system_5fresized_70',['SYSTEM_RESIZED',['../namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7a109aa03c8823fcc0ab193b7e48664cbf',1,'gridfire::expectations']]]
['splitmix64_50',['splitmix64',['../namespacegridfire_1_1utils_1_1hashing_1_1reaction.html#a5dab83ff5c1faf5a17a96cbffa07bffb',1,'gridfire::utils::hashing::reaction']]],
['stale_51',['STALE',['../classgridfire_1_1_graph_engine.html#ac94adcb6d39f7633f326f038dca15ec6a4d855a061b3066dc14a3b12ed26b5456',1,'gridfire::GraphEngine::STALE'],['../namespacegridfire_1_1expectations.html#a926cb0409b1f38770eb028bcac70a87ca4d855a061b3066dc14a3b12ed26b5456',1,'gridfire::expectations::STALE']]],
['staleengineerror_52',['StaleEngineError',['../classgridfire_1_1exceptions_1_1_stale_engine_error.html',1,'gridfire::exceptions::StaleEngineError'],['../structgridfire_1_1expectations_1_1_stale_engine_error.html',1,'gridfire::expectations::StaleEngineError'],['../classgridfire_1_1exceptions_1_1_stale_engine_error.html#ade628b2919f3a4c7a8fda2c654029872',1,'gridfire::exceptions::StaleEngineError::StaleEngineError()'],['../structgridfire_1_1expectations_1_1_stale_engine_error.html#ad477b6e562bf4167ad327ebaccd4cf10',1,'gridfire::expectations::StaleEngineError::StaleEngineError()']]],
['staleengineerrortypes_53',['StaleEngineErrorTypes',['../namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7',1,'gridfire::expectations']]],
['staleenginetrigger_54',['StaleEngineTrigger',['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html',1,'gridfire::exceptions::StaleEngineTrigger'],['../classgridfire_1_1exceptions_1_1_stale_engine_trigger.html#a3c7689e6e1e7269bae7275b099b2f387',1,'gridfire::exceptions::StaleEngineTrigger::StaleEngineTrigger()']]],
['stalejacobianerror_55',['StaleJacobianError',['../classgridfire_1_1exceptions_1_1_stale_jacobian_error.html',1,'gridfire::exceptions::StaleJacobianError'],['../classgridfire_1_1exceptions_1_1_stale_jacobian_error.html#a0a1f6e905239147ba53b374e62bef505',1,'gridfire::exceptions::StaleJacobianError::StaleJacobianError()']]],
['staletype_56',['staleType',['../structgridfire_1_1expectations_1_1_stale_engine_error.html#a10bce51a63024715959a66673b909590',1,'gridfire::expectations::StaleEngineError']]],
['state_57',['state',['../structgridfire_1_1exceptions_1_1_stale_engine_trigger_1_1state.html',1,'gridfire::exceptions::StaleEngineTrigger::state'],['../structgridfire_1_1solver_1_1_c_v_o_d_e_solver_strategy_1_1_timestep_context.html#aaae3c42b9172be4d501f022e67f5a6f6',1,'gridfire::solver::CVODESolverStrategy::TimestepContext::state']]],
['status_58',['status',['../structgridfire_1_1_priming_report.html#a5fec4b465afb4f2d9bc30cd1cab1b50d',1,'gridfire::PrimingReport']]],
['std_59',['std',['../namespacestd.html',1,'']]],
['step_60',['step',['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_simulation_time_trigger.html#aafc7f40bde2c78f4d100b6f9da771831',1,'gridfire::trigger::solver::CVODE::SimulationTimeTrigger::step()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_off_diagonal_trigger.html#a8b882c6ba6e267d7051031140bbb7ad6',1,'gridfire::trigger::solver::CVODE::OffDiagonalTrigger::step()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_timestep_collapse_trigger.html#a9723e389aeba05fdb3d4fd1dcc1ba07d',1,'gridfire::trigger::solver::CVODE::TimestepCollapseTrigger::step()'],['../classgridfire_1_1trigger_1_1solver_1_1_c_v_o_d_e_1_1_convergence_failure_trigger.html#aaef2090ed67a7c27967821f75a61e524',1,'gridfire::trigger::solver::CVODE::ConvergenceFailureTrigger::step()'],['../classgridfire_1_1trigger_1_1_trigger.html#a4b7ffa4d8d31e2118a8e86172be51041',1,'gridfire::trigger::Trigger::step()'],['../classgridfire_1_1trigger_1_1_and_trigger.html#a8e743e8ebe71f9ded835177db6fad908',1,'gridfire::trigger::AndTrigger::step()'],['../classgridfire_1_1trigger_1_1_or_trigger.html#a95a801aafb5aaa9a22566ebf722a1150',1,'gridfire::trigger::OrTrigger::step()'],['../classgridfire_1_1trigger_1_1_not_trigger.html#a5096cb7e70ea357f28e1b9fc8301c793',1,'gridfire::trigger::NotTrigger::step()'],['../classgridfire_1_1trigger_1_1_every_nth_trigger.html#a26d0aca39087a1f69e96e0701ca83f81',1,'gridfire::trigger::EveryNthTrigger::step()']]],
['step_20by_20step_20example_61',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md66',1,'']]],
['step_20example_62',['3. Step-by-Step Example',['../md_docs_2static_2usage.html#autotoc_md66',1,'']]],
['stepderivatives_63',['StepDerivatives',['../structgridfire_1_1_step_derivatives.html',1,'gridfire::StepDerivatives< T >'],['../structgridfire_1_1_step_derivatives.html#a26deeb236e77eddb0119ad368a5d8f1c',1,'gridfire::StepDerivatives::StepDerivatives()']]],
['stoichiometric_5fcoefficients_64',['stoichiometric_coefficients',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#a7a7e9167b19e339e0d69544b9c00e79c',1,'gridfire::GraphEngine::PrecomputedReaction']]],
['stoichiometry_65',['stoichiometry',['../classgridfire_1_1reaction_1_1_reaction.html#ad49f4cad024db72c966d949c75f1ce4d',1,'gridfire::reaction::Reaction::stoichiometry() const =0'],['../classgridfire_1_1reaction_1_1_reaction.html#ab7888b57507d6d27de6e5fcaea40fff5',1,'gridfire::reaction::Reaction::stoichiometry(const fourdst::atomic::Species &species) const =0'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a57b2695d152360a6ba08776cc760e3a1',1,'gridfire::reaction::ReaclibReaction::stoichiometry(const fourdst::atomic::Species &species) const override'],['../classgridfire_1_1reaction_1_1_reaclib_reaction.html#a0f629cbfe95dc5643b5e3724be0db2f9',1,'gridfire::reaction::ReaclibReaction::stoichiometry() const override'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a8bf7dc26d9f1375625df99bceba08a44',1,'gridfire::rates::weak::WeakReaction::stoichiometry() const override'],['../classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html#a1f4acfdb39bb861aaee9f3f28cfc406e',1,'gridfire::rates::weak::WeakReaction::stoichiometry(const fourdst::atomic::Species &species) const override'],['../classgridfire_1_1_reaction.html#a55b7f61d9bde45f2ca485c1b07a05950',1,'gridfire::Reaction::stoichiometry() const=0'],['../classgridfire_1_1_reaction.html#af0a893603aa88f7d7d205b9b969af487',1,'gridfire::Reaction::stoichiometry(const fourdst::atomic::Species &species) const=0']]],
['strategies_66',['Numerical Solver Strategies',['../index.html#autotoc_md36',1,'']]],
['stringtobasepartitiontype_67',['stringToBasePartitionType',['../namespacegridfire_1_1partition.html#a84de6308486d35ce8bc1a9dea52dfa4a',1,'gridfire::partition']]],
['strong_68',['STRONG',['../namespacegridfire.html#ad7f0577c2f88caaf0cec6cf80c04892ba3dfb3ae3cdaa322f0388f1a531c39520',1,'gridfire']]],
['success_69',['success',['../structgridfire_1_1_priming_report.html#afa4dd791ddd9df84039554524b681fb3',1,'gridfire::PrimingReport']]],
['sum_5fproduct_70',['sum_product',['../namespacegridfire_1_1approx8.html#aafd24448743672021dd4507316060817',1,'gridfire::approx8']]],
['supports_71',['supports',['../classgridfire_1_1partition_1_1_composite_partition_function.html#ae8908a78f087ea516cdd5a4cdd449a9c',1,'gridfire::partition::CompositePartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_partition_function.html#a6df4191d10516477371a0384e1e55bf5',1,'gridfire::partition::PartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_ground_state_partition_function.html#a49b18aae58eb6250aaa23d43d55f02bd',1,'gridfire::partition::GroundStatePartitionFunction::supports()'],['../classgridfire_1_1partition_1_1_rauscher_thielemann_partition_function.html#a588a11c654751765b04d6425c99041f5',1,'gridfire::partition::RauscherThielemannPartitionFunction::supports()'],['../class_py_partition_function.html#a0f288a01a3ed7fb92fff5d9fd7d56aa8',1,'PyPartitionFunction::supports()']]],
['symmetry_5ffactor_72',['symmetry_factor',['../structgridfire_1_1_graph_engine_1_1_precomputed_reaction.html#ac42504e868c0b9fd9ac9a405ea739f0e',1,'gridfire::GraphEngine::PrecomputedReaction']]],
['syncinternalmaps_73',['syncInternalMaps',['../classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f',1,'gridfire::GraphEngine']]],
['system_5fresized_74',['SYSTEM_RESIZED',['../namespacegridfire_1_1expectations.html#aef568e2802c03adef56dbcb6511d66c7a109aa03c8823fcc0ab193b7e48664cbf',1,'gridfire::expectations']]]
];