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docs(docs): rebuilt docs

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Emily Boudreaux
2025-11-04 14:04:26 -05:00
parent e87206a4a3
commit 77e6a918a5
710 changed files with 14858 additions and 5874 deletions
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@@ -29,7 +29,7 @@
<tbody>
<tr id="projectrow">
<td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;0.6.0</span>
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0-alpha</span>
</div>
<div id="projectbrief">General Purpose Nuclear Network</div>
</td>
@@ -110,14 +110,16 @@ $(function(){initNavTree('classgridfire_1_1_adaptive_engine_view.html',''); init
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a5d1b50afd2fba6af75e976a4f9c9dcbc">calculateEpsDerivatives</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a3c1e27b45051c4ba481a2b87513982ed">calculateMolarReactionFlow</a>(const reaction::Reaction &amp;reaction, const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac5545d546166de94514871d7ad7b8669">calculateRHSAndEnergy</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3">Config</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c">constructReactionIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d">constructSpeciesIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a95fbfb7f2bdbf80195f1ea0aff8d62fb">cullReactionsByFlow</a>(const std::vector&lt; ReactionFlow &gt; &amp;allFlows, const std::unordered_set&lt; fourdst::atomic::Species &gt; &amp;reachableSpecies, const fourdst::composition::Composition &amp;comp, double maxFlow) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a7b8b3a786b973e4383e721358e61b7ed">finalizeActiveSet</a>(const std::vector&lt; const reaction::Reaction * &gt; &amp;finalReactions)</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b">findReachableSpecies</a>(const NetIn &amp;netIn) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a8da7664cf483cba7f979f855a74c3559">generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a11d602a708af4629f51873b17f7b8dbd">gridfire::DynamicEngine::generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ab2f975b860ad4f42ed1ba45e41c8e959">collectComposition</a>(fourdst::composition::Composition &amp;comp) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#afec39b2faa34ea65c5488dd8e11ba3c3">Config</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c">constructReactionIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d">constructSpeciesIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a95fbfb7f2bdbf80195f1ea0aff8d62fb">cullReactionsByFlow</a>(const std::vector&lt; ReactionFlow &gt; &amp;allFlows, const std::unordered_set&lt; fourdst::atomic::Species &gt; &amp;reachableSpecies, const fourdst::composition::Composition &amp;comp, double maxFlow) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a7b8b3a786b973e4383e721358e61b7ed">finalizeActiveSet</a>(const std::vector&lt; const reaction::Reaction * &gt; &amp;finalReactions)</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b">findReachableSpecies</a>(const NetIn &amp;netIn) const</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a8da7664cf483cba7f979f855a74c3559">generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a7b8951ebe897f1ab72149068db13dbb6">generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho, const std::vector&lt; fourdst::atomic::Species &gt; &amp;activeSpecies) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#acba9f89a48d38b1c7f7dcb2a39c6816d">generateJacobianMatrix</a>(const fourdst::composition::Composition &amp;comp, double T9, double rho, const SparsityPattern &amp;sparsityPattern) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c">getBaseEngine</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_adaptive_engine_view.html">gridfire::AdaptiveEngineView</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html#a04317b66ef14d519264bc30ee69f5bf9">getDepth</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></td><td class="entry"><span class="mlabel">inline</span><span class="mlabel">virtual</span></td></tr>