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+     id="defs6" />
+  <circle
+     style="fill:#000000;fill-opacity:0;stroke:#656565;stroke-width:1.4;stroke-opacity:1;stroke-miterlimit:4;stroke-dasharray:none"
+     id="path4611"
+     cx="5.5"
+     cy="8.5"
+     r="3.5" />
+  <path
+     style="fill:#656565;fill-opacity:1;stroke:none;stroke-width:1px;stroke-linecap:butt;stroke-linejoin:miter;stroke-opacity:1"
+     d="M 11,7 13.5,10 16,7 Z"
+     id="path4609"
+     />
+  <path
+     style="fill:none;stroke:#656565;stroke-width:1.4;stroke-linecap:round;stroke-linejoin:miter;stroke-miterlimit:4;stroke-dasharray:none;stroke-opacity:1"
+     d="m 8.1085854,11.109059 2.7823556,2.782356"
+     id="path4630"
+     />
+</svg>

docs/html/search/mag_seld.svg

@@ -0,0 +1,31 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<!-- Created with Inkscape (http://www.inkscape.org/) -->
+<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
+ "https://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
+<svg
+   xmlns="http://www.w3.org/2000/svg"
+   version="1.1"
+   id="svg2"
+   width="20"
+   height="19"
+   viewBox="0 0 20 19"
+  >
+  <defs
+     id="defs6" />
+  <circle
+     style="fill:#000000;fill-opacity:0;stroke:#c5C5C5;stroke-width:1.4;stroke-opacity:1;stroke-miterlimit:4;stroke-dasharray:none"
+     id="path4611"
+     cx="5.5"
+     cy="8.5"
+     r="3.5" />
+  <path
+     style="fill:#c5C5C5;fill-opacity:1;stroke:none;stroke-width:1px;stroke-linecap:butt;stroke-linejoin:miter;stroke-opacity:1"
+     d="M 11,7 13.5,10 16,7 Z"
+     id="path4609"
+     />
+  <path
+     style="fill:none;stroke:#c5C5C5;stroke-width:1.4;stroke-linecap:round;stroke-linejoin:miter;stroke-miterlimit:4;stroke-dasharray:none;stroke-opacity:1"
+     d="m 8.1085854,11.109059 2.7823556,2.782356"
+     id="path4630"
+     />
+</svg>

docs/html/search/namespaces_0.js

@@ -0,0 +1,8 @@
+var searchData=
+[
+  ['gridfire_0',['gridfire',['../namespacegridfire.html',1,'']]],
+  ['gridfire_3a_3aapprox8_1',['approx8',['../namespacegridfire_1_1approx8.html',1,'gridfire']]],
+  ['gridfire_3a_3areaclib_2',['reaclib',['../namespacegridfire_1_1reaclib.html',1,'gridfire']]],
+  ['gridfire_3a_3areaction_3',['reaction',['../namespacegridfire_1_1reaction.html',1,'gridfire']]],
+  ['gridfire_3a_3asolver_4',['solver',['../namespacegridfire_1_1solver.html',1,'gridfire']]]
+];

docs/html/search/namespaces_1.js

@@ -0,0 +1,4 @@
+var searchData=
+[
+  ['std_0',['std',['../namespacestd.html',1,'']]]
+];

docs/html/search/pages_0.js

@@ -0,0 +1,4 @@
+var searchData=
+[
+  ['gridfire_0',['GridFire',['../index.html',1,'']]]
+];

docs/html/search/pages_1.js

@@ -0,0 +1,4 @@
+var searchData=
+[
+  ['list_0',['Todo List',['../todo.html',1,'']]]
+];

docs/html/search/pages_2.js

@@ -0,0 +1,4 @@
+var searchData=
+[
+  ['todo_20list_0',['Todo List',['../todo.html',1,'']]]
+];

docs/html/search/related_0.js

@@ -0,0 +1,4 @@
+var searchData=
+[
+  ['operator_3c_3c_0',['operator<<',['../structgridfire_1_1_net_out.html#a6996f06951c2a873e5464773ddc7319b',1,'gridfire::NetOut::operator<<()'],['../structgridfire_1_1reaction_1_1_rate_coefficient_set.html#a31a92f95a27e4430209dfc2bdfa5c40f',1,'gridfire::reaction::RateCoefficientSet::operator<<()']]]
+];

docs/html/search/search.css

@@ -0,0 +1,291 @@
+/*---------------- Search Box positioning */
+
+#main-menu > li:last-child {
+    /* This <li> object is the parent of the search bar */
+    display: flex;
+    justify-content: center;
+    align-items: center;
+    height: 36px;
+    margin-right: 1em;
+}
+
+/*---------------- Search box styling */
+
+.SRPage * {
+    font-weight: normal;
+    line-height: normal;
+}
+
+dark-mode-toggle {
+    margin-left: 5px;
+    display: flex;
+    float: right;
+}
+
+#MSearchBox {
+    display: inline-block;
+    white-space : nowrap;
+    background: white;
+    border-radius: 0.65em;
+    box-shadow: inset 0.5px 0.5px 3px 0px #555;
+    z-index: 102;
+}
+
+#MSearchBox .left {
+    display: inline-block;
+    vertical-align: middle;
+    height: 1.4em;
+}
+
+#MSearchSelect {
+    display: inline-block;
+    vertical-align: middle;
+    width: 20px;
+    height: 19px;
+    background-image: url('mag_sel.svg');
+    margin: 0 0 0 0.3em;
+    padding: 0;
+}
+
+#MSearchSelectExt {
+    display: inline-block;
+    vertical-align: middle;
+    width: 10px;
+    height: 19px;
+    background-image: url('mag.svg');
+    margin: 0 0 0 0.5em;
+    padding: 0;
+}
+
+
+#MSearchField {
+    display: inline-block;
+    vertical-align: middle;
+    width: 7.5em;
+    height: 19px;
+    margin: 0 0.15em;
+    padding: 0;
+    line-height: 1em;
+    border:none;
+    color: #909090;
+    outline: none;
+    font-family: Arial,Verdana,sans-serif;
+    -webkit-border-radius: 0px;
+    border-radius: 0px;
+    background: none;
+}
+
+@media(hover: none) {
+    /* to avoid zooming on iOS */
+    #MSearchField {
+        font-size: 16px;
+    }
+}
+
+#MSearchBox .right {
+    display: inline-block;
+    vertical-align: middle;
+    width: 1.4em;
+    height: 1.4em;
+}
+
+#MSearchClose {
+    display: none;
+    font-size: inherit;
+    background : none;
+    border: none;
+    margin: 0;
+    padding: 0;
+    outline: none;
+
+}
+
+#MSearchCloseImg {
+    padding: 0.3em;
+    margin: 0;
+}
+
+.MSearchBoxActive #MSearchField {
+    color: black;
+}
+
+
+
+/*---------------- Search filter selection */
+
+#MSearchSelectWindow {
+    display: none;
+    position: absolute;
+    left: 0; top: 0;
+    border: 1px solid #90A5CE;
+    background-color: #F9FAFC;
+    z-index: 10001;
+    padding-top: 4px;
+    padding-bottom: 4px;
+    -moz-border-radius: 4px;
+    -webkit-border-top-left-radius: 4px;
+    -webkit-border-top-right-radius: 4px;
+    -webkit-border-bottom-left-radius: 4px;
+    -webkit-border-bottom-right-radius: 4px;
+    -webkit-box-shadow: 5px 5px 5px rgba(0, 0, 0, 0.15);
+}
+
+.SelectItem {
+    font: 8pt Arial,Verdana,sans-serif;
+    padding-left:  2px;
+    padding-right: 12px;
+    border: 0px;
+}
+
+span.SelectionMark {
+    margin-right: 4px;
+    font-family: 'JetBrains Mono',Consolas,Monaco,'Andale Mono','Ubuntu Mono',monospace,fixed;
+    outline-style: none;
+    text-decoration: none;
+}
+
+a.SelectItem {
+    display: block;
+    outline-style: none;
+    color: black;
+    text-decoration: none;
+    padding-left:   6px;
+    padding-right: 12px;
+}
+
+a.SelectItem:focus,
+a.SelectItem:active {
+    color: black;
+    outline-style: none;
+    text-decoration: none;
+}
+
+a.SelectItem:hover {
+    color: white;
+    background-color: #3D578C;
+    outline-style: none;
+    text-decoration: none;
+    cursor: pointer;
+    display: block;
+}
+
+/*---------------- Search results window */
+
+iframe#MSearchResults {
+    /*width: 60ex;*/
+    height: 15em;
+}
+
+#MSearchResultsWindow {
+    display: none;
+    position: absolute;
+    left: 0; top: 0;
+    border: 1px solid black;
+    background-color: #EEF1F7;
+    z-index:10000;
+    width: 300px;
+    height: 400px;
+    overflow: auto;
+}
+
+/* ----------------------------------- */
+
+
+#SRIndex {
+    clear:both; 
+}
+
+.SREntry {
+    font-size: 10pt;
+    padding-left: 1ex;
+}
+
+.SRPage .SREntry {
+    font-size: 8pt;
+    padding: 1px 5px;
+}
+
+div.SRPage {
+    margin: 5px 2px;
+    background-color: #EEF1F7;
+}
+
+.SRChildren {
+    padding-left: 3ex; padding-bottom: .5em 
+}
+
+.SRPage .SRChildren {
+    display: none;
+}
+
+.SRSymbol {
+    font-weight: bold;
+    color: #425E97;
+    font-family: Arial,Verdana,sans-serif;
+    text-decoration: none;
+    outline: none;
+}
+
+a.SRScope {
+    display: block;
+    color: #425E97;
+    font-family: Arial,Verdana,sans-serif;
+    font-size: 8pt;
+    text-decoration: none;
+    outline: none;
+}
+
+a.SRSymbol:focus, a.SRSymbol:active,
+a.SRScope:focus, a.SRScope:active {
+    text-decoration: underline;
+}
+
+span.SRScope {
+    padding-left: 4px;
+    font-family: Arial,Verdana,sans-serif;
+}
+
+.SRPage .SRStatus {
+    padding: 2px 5px;
+    font-size: 8pt;
+    font-style: italic;
+    font-family: Arial,Verdana,sans-serif;
+}
+
+.SRResult {
+    display: none;
+}
+
+div.searchresults {
+    margin-left: 10px;
+    margin-right: 10px;
+}
+
+/*---------------- External search page results */
+
+.pages b {
+   color: white;
+   padding: 5px 5px 3px 5px;
+   background-image: url("../tab_a.png");
+   background-repeat: repeat-x;
+   text-shadow: 0 1px 1px #000000;
+}
+
+.pages {
+    line-height: 17px;
+    margin-left: 4px;
+    text-decoration: none;
+}
+
+.hl {
+    font-weight: bold;
+}
+
+#searchresults {
+    margin-bottom: 20px;
+}
+
+.searchpages {
+    margin-top: 10px;
+}
+

docs/html/search/search.js

@@ -0,0 +1,694 @@
+/*
+ @licstart  The following is the entire license notice for the JavaScript code in this file.
+
+ The MIT License (MIT)
+
+ Copyright (C) 1997-2020 by Dimitri van Heesch
+
+ Permission is hereby granted, free of charge, to any person obtaining a copy of this software
+ and associated documentation files (the "Software"), to deal in the Software without restriction,
+ including without limitation the rights to use, copy, modify, merge, publish, distribute,
+ sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is
+ furnished to do so, subject to the following conditions:
+
+ The above copyright notice and this permission notice shall be included in all copies or
+ substantial portions of the Software.
+
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING
+ BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+ NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
+ DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+ @licend  The above is the entire license notice for the JavaScript code in this file
+ */
+const SEARCH_COOKIE_NAME = ''+'search_grp';
+
+const searchResults = new SearchResults();
+
+/* A class handling everything associated with the search panel.
+
+   Parameters:
+   name - The name of the global variable that will be
+          storing this instance.  Is needed to be able to set timeouts.
+   resultPath - path to use for external files
+*/
+function SearchBox(name, resultsPath, extension) {
+  if (!name || !resultsPath) {  alert("Missing parameters to SearchBox."); }
+  if (!extension || extension == "") { extension = ".html"; }
+
+  function getXPos(item) {
+    let x = 0;
+    if (item.offsetWidth) {
+      while (item && item!=document.body) {
+        x   += item.offsetLeft;
+        item = item.offsetParent;
+      }
+    }
+    return x;
+  }
+
+  function getYPos(item) {
+    let y = 0;
+    if (item.offsetWidth) {
+      while (item && item!=document.body) {
+        y   += item.offsetTop;
+        item = item.offsetParent;
+      }
+    }
+    return y;
+  }
+
+  // ---------- Instance variables
+  this.name                  = name;
+  this.resultsPath           = resultsPath;
+  this.keyTimeout            = 0;
+  this.keyTimeoutLength      = 500;
+  this.closeSelectionTimeout = 300;
+  this.lastSearchValue       = "";
+  this.lastResultsPage       = "";
+  this.hideTimeout           = 0;
+  this.searchIndex           = 0;
+  this.searchActive          = false;
+  this.extension             = extension;
+
+  // ----------- DOM Elements
+
+  this.DOMSearchField              = () => document.getElementById("MSearchField");
+  this.DOMSearchSelect             = () => document.getElementById("MSearchSelect");
+  this.DOMSearchSelectWindow       = () => document.getElementById("MSearchSelectWindow");
+  this.DOMPopupSearchResults       = () => document.getElementById("MSearchResults");
+  this.DOMPopupSearchResultsWindow = () => document.getElementById("MSearchResultsWindow");
+  this.DOMSearchClose              = () => document.getElementById("MSearchClose");
+  this.DOMSearchBox                = () => document.getElementById("MSearchBox");
+
+  // ------------ Event Handlers
+
+  // Called when focus is added or removed from the search field.
+  this.OnSearchFieldFocus = function(isActive) {
+    this.Activate(isActive);
+  }
+
+  this.OnSearchSelectShow = function() {
+    const searchSelectWindow = this.DOMSearchSelectWindow();
+    const searchField        = this.DOMSearchSelect();
+
+    const left = getXPos(searchField);
+    const top  = getYPos(searchField) + searchField.offsetHeight;
+
+    // show search selection popup
+    searchSelectWindow.style.display='block';
+    searchSelectWindow.style.left =  left + 'px';
+    searchSelectWindow.style.top  =  top  + 'px';
+
+    // stop selection hide timer
+    if (this.hideTimeout) {
+      clearTimeout(this.hideTimeout);
+      this.hideTimeout=0;
+    }
+    return false; // to avoid "image drag" default event
+  }
+
+  this.OnSearchSelectHide = function() {
+    this.hideTimeout = setTimeout(this.CloseSelectionWindow.bind(this),
+                                  this.closeSelectionTimeout);
+  }
+
+  // Called when the content of the search field is changed.
+  this.OnSearchFieldChange = function(evt) {
+    if (this.keyTimeout) { // kill running timer
+      clearTimeout(this.keyTimeout);
+      this.keyTimeout = 0;
+    }
+
+    const e = evt ? evt : window.event; // for IE
+    if (e.keyCode==40 || e.keyCode==13) {
+      if (e.shiftKey==1) {
+        this.OnSearchSelectShow();
+        const win=this.DOMSearchSelectWindow();
+        for (let i=0;i<win.childNodes.length;i++) {
+          const child = win.childNodes[i]; // get span within a
+          if (child.className=='SelectItem') {
+            child.focus();
+            return;
+          }
+        }
+        return;
+      } else {
+        const elem = searchResults.NavNext(0);
+        if (elem) elem.focus();
+      }
+    } else if (e.keyCode==27) { // Escape out of the search field
+      e.stopPropagation();
+      this.DOMSearchField().blur();
+      this.DOMPopupSearchResultsWindow().style.display = 'none';
+      this.DOMSearchClose().style.display = 'none';
+      this.lastSearchValue = '';
+      this.Activate(false);
+      return;
+    }
+
+    // strip whitespaces
+    const searchValue = this.DOMSearchField().value.replace(/ +/g, "");
+
+    if (searchValue != this.lastSearchValue) { // search value has changed
+      if (searchValue != "") { // non-empty search
+        // set timer for search update
+        this.keyTimeout = setTimeout(this.Search.bind(this), this.keyTimeoutLength);
+      } else { // empty search field
+        this.DOMPopupSearchResultsWindow().style.display = 'none';
+        this.DOMSearchClose().style.display = 'none';
+        this.lastSearchValue = '';
+      }
+    }
+  }
+
+  this.SelectItemCount = function() {
+    let count=0;
+    const win=this.DOMSearchSelectWindow();
+    for (let i=0;i<win.childNodes.length;i++) {
+      const child = win.childNodes[i]; // get span within a
+      if (child.className=='SelectItem') {
+        count++;
+      }
+    }
+    return count;
+  }
+
+  this.GetSelectionIdByName = function(name) {
+    let j=0;
+    const win=this.DOMSearchSelectWindow();
+    for (let i=0;i<win.childNodes.length;i++) {
+      const child = win.childNodes[i];
+      if (child.className=='SelectItem') {
+        if (child.childNodes[1].nodeValue==name) {
+          return j;
+        }
+        j++;
+      }
+    }
+    return 0;
+  }
+
+  this.SelectItemSet = function(id) {
+    let j=0;
+    const win=this.DOMSearchSelectWindow();
+    for (let i=0;i<win.childNodes.length;i++) {
+      const child = win.childNodes[i]; // get span within a
+      if (child.className=='SelectItem') {
+        const node = child.firstChild;
+        if (j==id) {
+          node.innerHTML='&#8226;';
+          Cookie.writeSetting(SEARCH_COOKIE_NAME, child.childNodes[1].nodeValue, 0)
+        } else {
+          node.innerHTML='&#160;';
+        }
+        j++;
+      }
+    }
+  }
+
+  // Called when an search filter selection is made.
+  // set item with index id as the active item
+  this.OnSelectItem = function(id) {
+    this.searchIndex = id;
+    this.SelectItemSet(id);
+    const searchValue = this.DOMSearchField().value.replace(/ +/g, "");
+    if (searchValue!="" && this.searchActive) { // something was found -> do a search
+      this.Search();
+    }
+  }
+
+  this.OnSearchSelectKey = function(evt) {
+    const e = (evt) ? evt : window.event; // for IE
+    if (e.keyCode==40 && this.searchIndex<this.SelectItemCount()) { // Down
+      this.searchIndex++;
+      this.OnSelectItem(this.searchIndex);
+    } else if (e.keyCode==38 && this.searchIndex>0) { // Up
+      this.searchIndex--;
+      this.OnSelectItem(this.searchIndex);
+    } else if (e.keyCode==13 || e.keyCode==27) {
+      e.stopPropagation();
+      this.OnSelectItem(this.searchIndex);
+      this.CloseSelectionWindow();
+      this.DOMSearchField().focus();
+    }
+    return false;
+  }
+
+  // --------- Actions
+
+  // Closes the results window.
+  this.CloseResultsWindow = function() {
+    this.DOMPopupSearchResultsWindow().style.display = 'none';
+    this.DOMSearchClose().style.display = 'none';
+    this.Activate(false);
+  }
+
+  this.CloseSelectionWindow = function() {
+    this.DOMSearchSelectWindow().style.display = 'none';
+  }
+
+  // Performs a search.
+  this.Search = function() {
+    this.keyTimeout = 0;
+
+    // strip leading whitespace
+    const searchValue = this.DOMSearchField().value.replace(/^ +/, "");
+
+    const code = searchValue.toLowerCase().charCodeAt(0);
+    let idxChar = searchValue.substr(0, 1).toLowerCase();
+    if ( 0xD800 <= code && code <= 0xDBFF && searchValue > 1) { // surrogate pair
+      idxChar = searchValue.substr(0, 2);
+    }
+
+    let jsFile;
+    let idx = indexSectionsWithContent[this.searchIndex].indexOf(idxChar);
+    if (idx!=-1) {
+      const hexCode=idx.toString(16);
+      jsFile = this.resultsPath + indexSectionNames[this.searchIndex] + '_' + hexCode + '.js';
+    }
+
+    const loadJS = function(url, impl, loc) {
+      const scriptTag = document.createElement('script');
+      scriptTag.src = url;
+      scriptTag.onload = impl;
+      scriptTag.onreadystatechange = impl;
+      loc.appendChild(scriptTag);
+    }
+
+    const domPopupSearchResultsWindow = this.DOMPopupSearchResultsWindow();
+    const domSearchBox = this.DOMSearchBox();
+    const domPopupSearchResults = this.DOMPopupSearchResults();
+    const domSearchClose = this.DOMSearchClose();
+    const resultsPath = this.resultsPath;
+
+    const handleResults = function() {
+      document.getElementById("Loading").style.display="none";
+      if (typeof searchData !== 'undefined') {
+        createResults(resultsPath);
+        document.getElementById("NoMatches").style.display="none";
+      }
+
+      if (idx!=-1) {
+        searchResults.Search(searchValue);
+      } else { // no file with search results => force empty search results
+        searchResults.Search('====');
+      }
+
+      if (domPopupSearchResultsWindow.style.display!='block') {
+        domSearchClose.style.display = 'inline-block';
+        let left = getXPos(domSearchBox) + 150;
+        let top  = getYPos(domSearchBox) + 20;
+        domPopupSearchResultsWindow.style.display = 'block';
+        left -= domPopupSearchResults.offsetWidth;
+        const maxWidth  = document.body.clientWidth;
+        const maxHeight = document.body.clientHeight;
+        let width = 300;
+        if (left<10) left=10;
+        if (width+left+8>maxWidth) width=maxWidth-left-8;
+        let height = 400;
+        if (height+top+8>maxHeight) height=maxHeight-top-8;
+        domPopupSearchResultsWindow.style.top     = top  + 'px';
+        domPopupSearchResultsWindow.style.left    = left + 'px';
+        domPopupSearchResultsWindow.style.width   = width + 'px';
+        domPopupSearchResultsWindow.style.height  = height + 'px';
+      }
+    }
+
+    if (jsFile) {
+      loadJS(jsFile, handleResults, this.DOMPopupSearchResultsWindow());
+    } else {
+      handleResults();
+    }
+
+    this.lastSearchValue = searchValue;
+  }
+
+  // -------- Activation Functions
+
+  // Activates or deactivates the search panel, resetting things to
+  // their default values if necessary.
+  this.Activate = function(isActive) {
+    if (isActive || // open it
+      this.DOMPopupSearchResultsWindow().style.display == 'block'
+    ) {
+      this.DOMSearchBox().className = 'MSearchBoxActive';
+      this.searchActive = true;
+    } else if (!isActive) { // directly remove the panel
+      this.DOMSearchBox().className = 'MSearchBoxInactive';
+      this.searchActive             = false;
+      this.lastSearchValue          = ''
+      this.lastResultsPage          = '';
+      this.DOMSearchField().value   = '';
+    }
+  }
+}
+
+// -----------------------------------------------------------------------
+
+// The class that handles everything on the search results page.
+function SearchResults() {
+
+  function convertToId(search) {
+    let result = '';
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