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<div id="projectname">GridFire<span id="projectnumber"> 0.0.1a</span>
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<div id="projectbrief">General Purpose Nuclear Network</div>
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<div class="header">
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<div class="headertitle"><div class="title">gridfire::FileDefinedEngineView Member List</div></div>
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<div class="contents">
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<p>This is the complete list of members for <a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a>, including all inherited members.</p>
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<table class="directory">
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||||
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a3b5162b7be35405285ef9f825ec2663b">buildFromFile</a>(const std::string &fileName)</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#ac371fb66fd0a76a04df204c9dd9a05ef">calculateMolarReactionFlow</a>(const reaction::Reaction &reaction, const std::vector< double > &Y_defined, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a2c1d88b06568f9ea4c65e794d012ebfb">calculateRHSAndEnergy</a>(const std::vector< double > &Y_defined, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187">Config</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#aebb3f3548f8781506f31580706810a4e">constructReactionIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a51ba09ff01fdcac1125d42f276c9a0a7">constructSpeciesIndexMap</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd">FileDefinedEngineView</a>(DynamicEngine &baseEngine, const std::string &fileName, const io::NetworkFileParser &parser)</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
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||||
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a48b2451f96b8f5511ffc4071519c0810">generateJacobianMatrix</a>(const std::vector< double > &Y_defined, const double T9, const double rho) override</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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||||
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a27a5163157cc15c4cb3b99a5d3564dbd">generateStoichiometryMatrix</a>() override</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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||||
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a4c8b273c5cb3d470567c5691b68493a3">getBaseEngine</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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||||
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a0ef8804780d13bbfce0856237bb00470">getJacobianMatrixEntry</a>(const int i_defined, const int j_defined) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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||||
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a5bbea17b69cc8f81bc251a04f4435a0c">getNetworkReactions</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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||||
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a8bb583e039b49608272997ed2d3387fa">getNetworkSpecies</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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||||
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#adbc50f397445f92b810d80cf329b8626">getScreeningModel</a>() const override</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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||||
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#ace3c6ea4841318c08695973ab3dcddc6">getSpeciesTimescales</a>(const std::vector< double > &Y_defined, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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||||
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a9da9224f5c99a5068f3d8cbf066e4693">getStoichiometryMatrixEntry</a>(const int speciesIndex_defined, const int reactionIndex_defined) const override</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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||||
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08">LogManager</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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||||
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a></td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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||||
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a></td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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||||
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a></td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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||||
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362">m_config</a></td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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||||
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b">m_fileName</a></td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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||||
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a6e421bc748933be31bed9ff53f12b595">m_isStale</a></td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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||||
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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||||
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500">m_parser</a></td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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||||
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#af0a77a4749a15aae87bdecfccbd1736e">m_reactionIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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||||
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">m_speciesIndexMap</a></td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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||||
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a97e5ee4651dbe6754678fe96e4702fee">mapFullToView</a>(const std::vector< double > &full) const</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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||||
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#ac231044e37e0962f664f8465e1ccb022">mapViewToFull</a>(const std::vector< double > &culled) const</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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||||
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#ae7d6f0ff9076d59d1245c047bbd1bdb9">mapViewToFullReactionIndex</a>(size_t culledReactionIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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||||
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a8d2c6b9a33b9c8c172bbd2c2e2e9ffaf">mapViewToFullSpeciesIndex</a>(size_t culledSpeciesIndex) const</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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||||
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a92f14da849e99d07c1ff1347addb9263">setNetworkFile</a>(const std::string &fileName)</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"></td></tr>
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||||
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#ad96bbee6d3d37b50d9236a975ef704c0">setScreeningModel</a>(screening::ScreeningType model) override</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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||||
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#ace3568eadaba69e7357b4386c5ca3eb0">update</a>(const NetIn &netIn) override</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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||||
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">validateNetworkState</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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||||
<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1_engine.html#a2e7970bed2100699f226f4141d5db037">~Engine</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine.html">gridfire::Engine</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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||||
<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html#a994660f2d553f3a123512dc5eb421e74">~EngineView</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1_engine_view.html">gridfire::EngineView< DynamicEngine ></a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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var classgridfire_1_1_file_defined_engine_view =
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[
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||||
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[ "LogManager", "classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08", null ],
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<a href="#pri-attribs">Private Attributes</a> |
|
||||
<a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser-members.html">List of all members</a> </div>
|
||||
<div class="headertitle"><div class="title">gridfire::io::MESANetworkFileParser Class Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
|
||||
</div><!--header-->
|
||||
<div class="contents">
|
||||
|
||||
<p><code>#include <<a class="el" href="network__file_8h_source.html">network_file.h</a>></code></p>
|
||||
<div class="dynheader">
|
||||
Inheritance diagram for gridfire::io::MESANetworkFileParser:</div>
|
||||
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|
||||
<div class="center">
|
||||
<img src="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.png" usemap="#gridfire::io::MESANetworkFileParser_map" alt=""/>
|
||||
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|
||||
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|
||||
</div></div>
|
||||
<table class="memberdecls">
|
||||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
|
||||
Public Member Functions</h2></td></tr>
|
||||
<tr class="memitem:ac5963d0da6780de753df996b490f8d2c" id="r_ac5963d0da6780de753df996b490f8d2c"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="#ac5963d0da6780de753df996b490f8d2c">MESANetworkFileParser</a> (const std::string &filename)</td></tr>
|
||||
<tr class="separator:ac5963d0da6780de753df996b490f8d2c"><td class="memSeparator" colspan="2"> </td></tr>
|
||||
<tr class="memitem:a568194277733b5c537901f8af32ee329" id="r_a568194277733b5c537901f8af32ee329"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1io_1_1_parsed_network_data.html">ParsedNetworkData</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="#a568194277733b5c537901f8af32ee329">parse</a> (const std::string &filename) const override</td></tr>
|
||||
<tr class="separator:a568194277733b5c537901f8af32ee329"><td class="memSeparator" colspan="2"> </td></tr>
|
||||
<tr class="inherit_header pub_methods_classgridfire_1_1io_1_1_network_file_parser"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1io_1_1_network_file_parser')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html">gridfire::io::NetworkFileParser</a></td></tr>
|
||||
<tr class="memitem:a9b4095d06fad5df3805c92ae97b3eab3 inherit pub_methods_classgridfire_1_1io_1_1_network_file_parser" id="r_a9b4095d06fad5df3805c92ae97b3eab3"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3">~NetworkFileParser</a> ()=default</td></tr>
|
||||
<tr class="separator:a9b4095d06fad5df3805c92ae97b3eab3 inherit pub_methods_classgridfire_1_1io_1_1_network_file_parser"><td class="memSeparator" colspan="2"> </td></tr>
|
||||
</table><table class="memberdecls">
|
||||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-types" name="pri-types"></a>
|
||||
Private Types</h2></td></tr>
|
||||
<tr class="memitem:af43ad8375abf1cedfdccc296b9958c2b" id="r_af43ad8375abf1cedfdccc296b9958c2b"><td class="memItemLeft" align="right" valign="top">using </td><td class="memItemRight" valign="bottom"><a class="el" href="#af43ad8375abf1cedfdccc296b9958c2b">Config</a> = fourdst::config::Config</td></tr>
|
||||
<tr class="separator:af43ad8375abf1cedfdccc296b9958c2b"><td class="memSeparator" colspan="2"> </td></tr>
|
||||
<tr class="memitem:a84aa6894a331ad57bdab1e1ab85d4055" id="r_a84aa6894a331ad57bdab1e1ab85d4055"><td class="memItemLeft" align="right" valign="top">using </td><td class="memItemRight" valign="bottom"><a class="el" href="#a84aa6894a331ad57bdab1e1ab85d4055">LogManager</a> = fourdst::logging::LogManager</td></tr>
|
||||
<tr class="separator:a84aa6894a331ad57bdab1e1ab85d4055"><td class="memSeparator" colspan="2"> </td></tr>
|
||||
</table><table class="memberdecls">
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||||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
|
||||
Private Attributes</h2></td></tr>
|
||||
<tr class="memitem:aea206c3a7600db8d657666fef88fa20d" id="r_aea206c3a7600db8d657666fef88fa20d"><td class="memItemLeft" align="right" valign="top"><a class="el" href="#af43ad8375abf1cedfdccc296b9958c2b">Config</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="#aea206c3a7600db8d657666fef88fa20d">m_config</a> = Config::getInstance()</td></tr>
|
||||
<tr class="separator:aea206c3a7600db8d657666fef88fa20d"><td class="memSeparator" colspan="2"> </td></tr>
|
||||
<tr class="memitem:ab9c683289d48e58edf06bf59215b4937" id="r_ab9c683289d48e58edf06bf59215b4937"><td class="memItemLeft" align="right" valign="top">quill::Logger * </td><td class="memItemRight" valign="bottom"><a class="el" href="#ab9c683289d48e58edf06bf59215b4937">m_logger</a> = LogManager::getInstance().getLogger("log")</td></tr>
|
||||
<tr class="separator:ab9c683289d48e58edf06bf59215b4937"><td class="memSeparator" colspan="2"> </td></tr>
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||||
<tr class="memitem:ab7f82597abf17f16c401bcdf528bd099" id="r_ab7f82597abf17f16c401bcdf528bd099"><td class="memItemLeft" align="right" valign="top">std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="#ab7f82597abf17f16c401bcdf528bd099">m_filename</a></td></tr>
|
||||
<tr class="separator:ab7f82597abf17f16c401bcdf528bd099"><td class="memSeparator" colspan="2"> </td></tr>
|
||||
</table>
|
||||
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
|
||||
<div class="textblock">
|
||||
<p class="definition">Definition at line <a class="el" href="network__file_8h_source.html#l00036">36</a> of file <a class="el" href="network__file_8h_source.html">network_file.h</a>.</p>
|
||||
</div><h2 class="groupheader">Member Typedef Documentation</h2>
|
||||
<a id="af43ad8375abf1cedfdccc296b9958c2b" name="af43ad8375abf1cedfdccc296b9958c2b"></a>
|
||||
<h2 class="memtitle"><span class="permalink"><a href="#af43ad8375abf1cedfdccc296b9958c2b">◆ </a></span>Config</h2>
|
||||
|
||||
<div class="memitem">
|
||||
<div class="memproto">
|
||||
<table class="mlabels">
|
||||
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|
||||
<td class="mlabels-left">
|
||||
<table class="memname">
|
||||
<tr>
|
||||
<td class="memname">using <a class="el" href="#af43ad8375abf1cedfdccc296b9958c2b">gridfire::io::MESANetworkFileParser::Config</a> = fourdst::config::Config</td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
<td class="mlabels-right">
|
||||
<span class="mlabels"><span class="mlabel private">private</span></span> </td>
|
||||
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||||
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||||
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|
||||
|
||||
<p class="definition">Definition at line <a class="el" href="network__file_8h_source.html#l00041">41</a> of file <a class="el" href="network__file_8h_source.html">network_file.h</a>.</p>
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||||
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||||
</div>
|
||||
<a id="a84aa6894a331ad57bdab1e1ab85d4055" name="a84aa6894a331ad57bdab1e1ab85d4055"></a>
|
||||
<h2 class="memtitle"><span class="permalink"><a href="#a84aa6894a331ad57bdab1e1ab85d4055">◆ </a></span>LogManager</h2>
|
||||
|
||||
<div class="memitem">
|
||||
<div class="memproto">
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||||
<table class="mlabels">
|
||||
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|
||||
<td class="mlabels-left">
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||||
<table class="memname">
|
||||
<tr>
|
||||
<td class="memname">using <a class="el" href="#a84aa6894a331ad57bdab1e1ab85d4055">gridfire::io::MESANetworkFileParser::LogManager</a> = fourdst::logging::LogManager</td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
<td class="mlabels-right">
|
||||
<span class="mlabels"><span class="mlabel private">private</span></span> </td>
|
||||
</tr>
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||||
</table>
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||||
</div><div class="memdoc">
|
||||
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||||
<p class="definition">Definition at line <a class="el" href="network__file_8h_source.html#l00042">42</a> of file <a class="el" href="network__file_8h_source.html">network_file.h</a>.</p>
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||||
|
||||
</div>
|
||||
</div>
|
||||
<h2 class="groupheader">Constructor & Destructor Documentation</h2>
|
||||
<a id="ac5963d0da6780de753df996b490f8d2c" name="ac5963d0da6780de753df996b490f8d2c"></a>
|
||||
<h2 class="memtitle"><span class="permalink"><a href="#ac5963d0da6780de753df996b490f8d2c">◆ </a></span>MESANetworkFileParser()</h2>
|
||||
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||||
<div class="memitem">
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||||
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||||
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|
||||
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||||
<td class="mlabels-left">
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||||
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||||
<td class="memname">gridfire::io::MESANetworkFileParser::MESANetworkFileParser </td>
|
||||
<td>(</td>
|
||||
<td class="paramtype">const std::string &</td> <td class="paramname"><span class="paramname"><em>filename</em></span></td><td>)</td>
|
||||
<td></td>
|
||||
</tr>
|
||||
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|
||||
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|
||||
<span class="mlabels"><span class="mlabel explicit">explicit</span></span> </td>
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||||
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||||
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||||
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||||
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||||
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||||
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||||
<h2 class="groupheader">Member Function Documentation</h2>
|
||||
<a id="a568194277733b5c537901f8af32ee329" name="a568194277733b5c537901f8af32ee329"></a>
|
||||
<h2 class="memtitle"><span class="permalink"><a href="#a568194277733b5c537901f8af32ee329">◆ </a></span>parse()</h2>
|
||||
|
||||
<div class="memitem">
|
||||
<div class="memproto">
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||||
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|
||||
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||||
<td class="mlabels-left">
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||||
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|
||||
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|
||||
<td class="memname"><a class="el" href="structgridfire_1_1io_1_1_parsed_network_data.html">ParsedNetworkData</a> gridfire::io::MESANetworkFileParser::parse </td>
|
||||
<td>(</td>
|
||||
<td class="paramtype">const std::string &</td> <td class="paramname"><span class="paramname"><em>filename</em></span></td><td>)</td>
|
||||
<td> const</td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
<td class="mlabels-right">
|
||||
<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span> </td>
|
||||
</tr>
|
||||
</table>
|
||||
</div><div class="memdoc">
|
||||
|
||||
<p>Implements <a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf">gridfire::io::NetworkFileParser</a>.</p>
|
||||
|
||||
</div>
|
||||
</div>
|
||||
<h2 class="groupheader">Member Data Documentation</h2>
|
||||
<a id="aea206c3a7600db8d657666fef88fa20d" name="aea206c3a7600db8d657666fef88fa20d"></a>
|
||||
<h2 class="memtitle"><span class="permalink"><a href="#aea206c3a7600db8d657666fef88fa20d">◆ </a></span>m_config</h2>
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||||
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||||
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||||
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||||
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|
||||
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||||
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||||
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||||
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|
||||
<td class="memname"><a class="el" href="#af43ad8375abf1cedfdccc296b9958c2b">Config</a>& gridfire::io::MESANetworkFileParser::m_config = Config::getInstance()</td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
<td class="mlabels-right">
|
||||
<span class="mlabels"><span class="mlabel private">private</span></span> </td>
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||||
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||||
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||||
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||||
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||||
<p class="definition">Definition at line <a class="el" href="network__file_8h_source.html#l00043">43</a> of file <a class="el" href="network__file_8h_source.html">network_file.h</a>.</p>
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||||
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||||
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||||
<a id="ab7f82597abf17f16c401bcdf528bd099" name="ab7f82597abf17f16c401bcdf528bd099"></a>
|
||||
<h2 class="memtitle"><span class="permalink"><a href="#ab7f82597abf17f16c401bcdf528bd099">◆ </a></span>m_filename</h2>
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||||
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||||
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||||
<td class="memname">std::string gridfire::io::MESANetworkFileParser::m_filename</td>
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||||
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||||
</table>
|
||||
</td>
|
||||
<td class="mlabels-right">
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<span class="mlabels"><span class="mlabel private">private</span></span> </td>
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<p class="definition">Definition at line <a class="el" href="network__file_8h_source.html#l00046">46</a> of file <a class="el" href="network__file_8h_source.html">network_file.h</a>.</p>
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||||
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<a id="ab9c683289d48e58edf06bf59215b4937" name="ab9c683289d48e58edf06bf59215b4937"></a>
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||||
<h2 class="memtitle"><span class="permalink"><a href="#ab9c683289d48e58edf06bf59215b4937">◆ </a></span>m_logger</h2>
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||||
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||||
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|
||||
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|
||||
<td class="memname">quill::Logger* gridfire::io::MESANetworkFileParser::m_logger = LogManager::getInstance().getLogger("log")</td>
|
||||
</tr>
|
||||
</table>
|
||||
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|
||||
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||||
<p class="definition">Definition at line <a class="el" href="network__file_8h_source.html#l00044">44</a> of file <a class="el" href="network__file_8h_source.html">network_file.h</a>.</p>
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||||
</div>
|
||||
</div>
|
||||
<hr/>The documentation for this class was generated from the following file:<ul>
|
||||
<li>src/network/include/gridfire/io/<a class="el" href="network__file_8h_source.html">network_file.h</a></li>
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<li class="navelem"><a class="el" href="namespacegridfire.html">gridfire</a></li><li class="navelem"><a class="el" href="namespacegridfire_1_1io.html">io</a></li><li class="navelem"><a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html">MESANetworkFileParser</a></li>
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||||
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Inheritance diagram for gridfire::io::NetworkFileParser:</div>
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<tr class="memitem:a9b4095d06fad5df3805c92ae97b3eab3" id="r_a9b4095d06fad5df3805c92ae97b3eab3"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="#a9b4095d06fad5df3805c92ae97b3eab3">~NetworkFileParser</a> ()=default</td></tr>
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|
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|
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<p class="definition">Definition at line <a class="el" href="network__file_8h_source.html#l00017">17</a> of file <a class="el" href="network__file_8h_source.html">network_file.h</a>.</p>
|
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<h2 class="memtitle"><span class="permalink"><a href="#a9b4095d06fad5df3805c92ae97b3eab3">◆ </a></span>~NetworkFileParser()</h2>
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||||
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<td class="mlabels-left">
|
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|
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|
||||
<td class="memname">virtual gridfire::io::NetworkFileParser::~NetworkFileParser </td>
|
||||
<td>(</td>
|
||||
<td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
|
||||
<td></td>
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|
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<a id="a66e8e724c903d6ef4dd1c8103276bdbf" name="a66e8e724c903d6ef4dd1c8103276bdbf"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a66e8e724c903d6ef4dd1c8103276bdbf">◆ </a></span>parse()</h2>
|
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<div class="memitem">
|
||||
<div class="memproto">
|
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|
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<td class="mlabels-left">
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|
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|
||||
<td class="memname">virtual <a class="el" href="structgridfire_1_1io_1_1_parsed_network_data.html">ParsedNetworkData</a> gridfire::io::NetworkFileParser::parse </td>
|
||||
<td>(</td>
|
||||
<td class="paramtype">const std::string &</td> <td class="paramname"><span class="paramname"><em>filename</em></span></td><td>)</td>
|
||||
<td> const</td>
|
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|
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|
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<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel pure-virtual">pure virtual</span></span> </td>
|
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|
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|
||||
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|
||||
|
||||
<p>Implemented in <a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329">gridfire::io::MESANetworkFileParser</a>, and <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8">gridfire::io::SimpleReactionListFileParser</a>.</p>
|
||||
|
||||
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|
||||
</div>
|
||||
<hr/>The documentation for this class was generated from the following file:<ul>
|
||||
<li>src/network/include/gridfire/io/<a class="el" href="network__file_8h_source.html">network_file.h</a></li>
|
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5
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<p>This is the complete list of members for <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html">gridfire::io::SimpleReactionListFileParser</a>, including all inherited members.</p>
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<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66">m_logger</a></td><td class="entry"><a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html">gridfire::io::SimpleReactionListFileParser</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8">parse</a>(const std::string &filename) const override</td><td class="entry"><a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html">gridfire::io::SimpleReactionListFileParser</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993">SimpleReactionListFileParser</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html">gridfire::io::SimpleReactionListFileParser</a></td><td class="entry"><span class="mlabel">explicit</span></td></tr>
|
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<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3">~NetworkFileParser</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html">gridfire::io::NetworkFileParser</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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<a href="#pub-methods">Public Member Functions</a> |
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<a href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser-members.html">List of all members</a> </div>
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<div class="headertitle"><div class="title">gridfire::io::SimpleReactionListFileParser Class Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
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|
||||
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||||
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||||
<p><code>#include <<a class="el" href="network__file_8h_source.html">network_file.h</a>></code></p>
|
||||
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|
||||
Inheritance diagram for gridfire::io::SimpleReactionListFileParser:</div>
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Public Member Functions</h2></td></tr>
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<tr class="memitem:afc8ed91e8c98205c505e3d9f0cff1993" id="r_afc8ed91e8c98205c505e3d9f0cff1993"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="#afc8ed91e8c98205c505e3d9f0cff1993">SimpleReactionListFileParser</a> ()</td></tr>
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<tr class="memitem:a4df01e3a93e1291d2cde0458545325f8" id="r_a4df01e3a93e1291d2cde0458545325f8"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structgridfire_1_1io_1_1_parsed_network_data.html">ParsedNetworkData</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="#a4df01e3a93e1291d2cde0458545325f8">parse</a> (const std::string &filename) const override</td></tr>
|
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<tr class="separator:a4df01e3a93e1291d2cde0458545325f8"><td class="memSeparator" colspan="2"> </td></tr>
|
||||
<tr class="inherit_header pub_methods_classgridfire_1_1io_1_1_network_file_parser"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1io_1_1_network_file_parser')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html">gridfire::io::NetworkFileParser</a></td></tr>
|
||||
<tr class="memitem:a9b4095d06fad5df3805c92ae97b3eab3 inherit pub_methods_classgridfire_1_1io_1_1_network_file_parser" id="r_a9b4095d06fad5df3805c92ae97b3eab3"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3">~NetworkFileParser</a> ()=default</td></tr>
|
||||
<tr class="separator:a9b4095d06fad5df3805c92ae97b3eab3 inherit pub_methods_classgridfire_1_1io_1_1_network_file_parser"><td class="memSeparator" colspan="2"> </td></tr>
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Private Types</h2></td></tr>
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<tr class="memitem:ad913155a5a2a36b29e4ce4ca8d71c036" id="r_ad913155a5a2a36b29e4ce4ca8d71c036"><td class="memItemLeft" align="right" valign="top">using </td><td class="memItemRight" valign="bottom"><a class="el" href="#ad913155a5a2a36b29e4ce4ca8d71c036">Config</a> = fourdst::config::Config</td></tr>
|
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<tr class="separator:ad913155a5a2a36b29e4ce4ca8d71c036"><td class="memSeparator" colspan="2"> </td></tr>
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|
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<tr class="separator:a6f8f9a1f54cd2be5ec66c3181be892de"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pri-attribs" name="pri-attribs"></a>
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||||
Private Attributes</h2></td></tr>
|
||||
<tr class="memitem:a4061e99bd77a3de0d6d9e317bfc74874" id="r_a4061e99bd77a3de0d6d9e317bfc74874"><td class="memItemLeft" align="right" valign="top"><a class="el" href="#ad913155a5a2a36b29e4ce4ca8d71c036">Config</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="#a4061e99bd77a3de0d6d9e317bfc74874">m_config</a> = Config::getInstance()</td></tr>
|
||||
<tr class="separator:a4061e99bd77a3de0d6d9e317bfc74874"><td class="memSeparator" colspan="2"> </td></tr>
|
||||
<tr class="memitem:acef7eafe3cbea159259f69c88d309b66" id="r_acef7eafe3cbea159259f69c88d309b66"><td class="memItemLeft" align="right" valign="top">quill::Logger * </td><td class="memItemRight" valign="bottom"><a class="el" href="#acef7eafe3cbea159259f69c88d309b66">m_logger</a> = LogManager::getInstance().getLogger("log")</td></tr>
|
||||
<tr class="separator:acef7eafe3cbea159259f69c88d309b66"><td class="memSeparator" colspan="2"> </td></tr>
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||||
</table>
|
||||
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
|
||||
<div class="textblock">
|
||||
<p class="definition">Definition at line <a class="el" href="network__file_8h_source.html#l00025">25</a> of file <a class="el" href="network__file_8h_source.html">network_file.h</a>.</p>
|
||||
</div><h2 class="groupheader">Member Typedef Documentation</h2>
|
||||
<a id="ad913155a5a2a36b29e4ce4ca8d71c036" name="ad913155a5a2a36b29e4ce4ca8d71c036"></a>
|
||||
<h2 class="memtitle"><span class="permalink"><a href="#ad913155a5a2a36b29e4ce4ca8d71c036">◆ </a></span>Config</h2>
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||||
|
||||
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||||
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||||
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||||
<td class="memname">using <a class="el" href="#ad913155a5a2a36b29e4ce4ca8d71c036">gridfire::io::SimpleReactionListFileParser::Config</a> = fourdst::config::Config</td>
|
||||
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||||
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||||
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<span class="mlabels"><span class="mlabel private">private</span></span> </td>
|
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||||
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||||
</div><div class="memdoc">
|
||||
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||||
<p class="definition">Definition at line <a class="el" href="network__file_8h_source.html#l00030">30</a> of file <a class="el" href="network__file_8h_source.html">network_file.h</a>.</p>
|
||||
|
||||
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||||
</div>
|
||||
<a id="a6f8f9a1f54cd2be5ec66c3181be892de" name="a6f8f9a1f54cd2be5ec66c3181be892de"></a>
|
||||
<h2 class="memtitle"><span class="permalink"><a href="#a6f8f9a1f54cd2be5ec66c3181be892de">◆ </a></span>LogManager</h2>
|
||||
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||||
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||||
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|
||||
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||||
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||||
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|
||||
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|
||||
<td class="memname">using <a class="el" href="#a6f8f9a1f54cd2be5ec66c3181be892de">gridfire::io::SimpleReactionListFileParser::LogManager</a> = fourdst::logging::LogManager</td>
|
||||
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|
||||
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|
||||
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|
||||
<td class="mlabels-right">
|
||||
<span class="mlabels"><span class="mlabel private">private</span></span> </td>
|
||||
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||||
</table>
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||||
</div><div class="memdoc">
|
||||
|
||||
<p class="definition">Definition at line <a class="el" href="network__file_8h_source.html#l00031">31</a> of file <a class="el" href="network__file_8h_source.html">network_file.h</a>.</p>
|
||||
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<h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<a id="afc8ed91e8c98205c505e3d9f0cff1993" name="afc8ed91e8c98205c505e3d9f0cff1993"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#afc8ed91e8c98205c505e3d9f0cff1993">◆ </a></span>SimpleReactionListFileParser()</h2>
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<td class="memname">gridfire::io::SimpleReactionListFileParser::SimpleReactionListFileParser </td>
|
||||
<td>(</td>
|
||||
<td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
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<td></td>
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<p class="definition">Definition at line <a class="el" href="network__file_8cpp_source.html#l00042">42</a> of file <a class="el" href="network__file_8cpp_source.html">network_file.cpp</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a4df01e3a93e1291d2cde0458545325f8">◆ </a></span>parse()</h2>
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<td class="memname"><a class="el" href="structgridfire_1_1io_1_1_parsed_network_data.html">ParsedNetworkData</a> gridfire::io::SimpleReactionListFileParser::parse </td>
|
||||
<td>(</td>
|
||||
<td class="paramtype">const std::string &</td> <td class="paramname"><span class="paramname"><em>filename</em></span></td><td>)</td>
|
||||
<td> const</td>
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<span class="mlabels"><span class="mlabel override">override</span><span class="mlabel virtual">virtual</span></span> </td>
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||||
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||||
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|
||||
|
||||
<p>Implements <a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf">gridfire::io::NetworkFileParser</a>.</p>
|
||||
|
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<p class="definition">Definition at line <a class="el" href="network__file_8cpp_source.html#l00044">44</a> of file <a class="el" href="network__file_8cpp_source.html">network_file.cpp</a>.</p>
|
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<a id="a4061e99bd77a3de0d6d9e317bfc74874" name="a4061e99bd77a3de0d6d9e317bfc74874"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a4061e99bd77a3de0d6d9e317bfc74874">◆ </a></span>m_config</h2>
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<td class="memname"><a class="el" href="#ad913155a5a2a36b29e4ce4ca8d71c036">Config</a>& gridfire::io::SimpleReactionListFileParser::m_config = Config::getInstance()</td>
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|
||||
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|
||||
</td>
|
||||
<td class="mlabels-right">
|
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<span class="mlabels"><span class="mlabel private">private</span></span> </td>
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||||
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||||
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||||
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|
||||
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||||
<p class="definition">Definition at line <a class="el" href="network__file_8h_source.html#l00032">32</a> of file <a class="el" href="network__file_8h_source.html">network_file.h</a>.</p>
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<a id="acef7eafe3cbea159259f69c88d309b66" name="acef7eafe3cbea159259f69c88d309b66"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#acef7eafe3cbea159259f69c88d309b66">◆ </a></span>m_logger</h2>
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<td class="memname">quill::Logger* gridfire::io::SimpleReactionListFileParser::m_logger = LogManager::getInstance().getLogger("log")</td>
|
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<p class="definition">Definition at line <a class="el" href="network__file_8h_source.html#l00033">33</a> of file <a class="el" href="network__file_8h_source.html">network_file.h</a>.</p>
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<hr/>The documentation for this class was generated from the following files:<ul>
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<li>src/network/include/gridfire/io/<a class="el" href="network__file_8h_source.html">network_file.h</a></li>
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<li>src/network/lib/io/<a class="el" href="network__file_8cpp_source.html">network_file.cpp</a></li>
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<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a339dbbf883b6ae20e33d9782d8376bcf">add_reaction</a>(ReactionT reaction)</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html">gridfire::reaction::TemplatedReactionSet< ReactionT ></a></td><td class="entry"></td></tr>
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<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a87257704009fcd57b553f86cdaacb597">begin</a>()</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html">gridfire::reaction::TemplatedReactionSet< ReactionT ></a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#aee42bb25973dadc6629bdb5cb1db6369">begin</a>() const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html">gridfire::reaction::TemplatedReactionSet< ReactionT ></a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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|
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<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a7777ecd0f594fdf66ce57d22610fad3c">contains</a>(const std::string_view &id) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html">gridfire::reaction::TemplatedReactionSet< ReactionT ></a></td><td class="entry"></td></tr>
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<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ab8cb5fbce6b819b9e4e44b0c2db54c6f">contains</a>(const Reaction &reaction) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html">gridfire::reaction::TemplatedReactionSet< ReactionT ></a></td><td class="entry"></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad870856d206d93f27125c88d44ff9e34">contains_species</a>(const fourdst::atomic::Species &species) const</td><td class="entry"><a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html">gridfire::reaction::TemplatedReactionSet< ReactionT ></a></td><td class="entry"></td></tr>
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<div class="headertitle"><div class="title">gridfire::screening::BareScreeningModel Member List</div></div>
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<p>This is the complete list of members for <a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">gridfire::screening::BareScreeningModel</a>, including all inherited members.</p>
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<table class="directory">
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<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">gridfire::screening::BareScreeningModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a">calculateFactors_impl</a>(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< T > &Y, const T T9, const T rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">gridfire::screening::BareScreeningModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60">calculateScreeningFactors</a>(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">gridfire::screening::BareScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac5647d633cd5bbd7cb5136b7fa4cad99">calculateScreeningFactors</a>(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< ADDouble > &Y, const ADDouble T9, const ADDouble rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">gridfire::screening::BareScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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<a href="#pub-methods">Public Member Functions</a> |
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<a href="#pri-methods">Private Member Functions</a> |
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<a href="classgridfire_1_1screening_1_1_bare_screening_model-members.html">List of all members</a> </div>
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<div class="headertitle"><div class="title">gridfire::screening::BareScreeningModel Class Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
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<p><code>#include <<a class="el" href="screening__bare_8h_source.html">screening_bare.h</a>></code></p>
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Inheritance diagram for gridfire::screening::BareScreeningModel:</div>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
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Public Member Functions</h2></td></tr>
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<tr class="memitem:ac35ad34c5da7e1b5087552aa5c83fe60" id="r_ac35ad34c5da7e1b5087552aa5c83fe60"><td class="memItemLeft" align="right" valign="top">std::vector< double > </td><td class="memItemRight" valign="bottom"><a class="el" href="#ac35ad34c5da7e1b5087552aa5c83fe60">calculateScreeningFactors</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const override</td></tr>
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<tr class="separator:ac35ad34c5da7e1b5087552aa5c83fe60"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ac5647d633cd5bbd7cb5136b7fa4cad99" id="r_ac5647d633cd5bbd7cb5136b7fa4cad99"><td class="memItemLeft" align="right" valign="top">std::vector< <a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="#ac5647d633cd5bbd7cb5136b7fa4cad99">calculateScreeningFactors</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< <a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> > &Y, const <a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> T9, const <a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> rho) const override</td></tr>
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<tr class="separator:ac5647d633cd5bbd7cb5136b7fa4cad99"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="inherit_header pub_methods_classgridfire_1_1screening_1_1_screening_model"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1screening_1_1_screening_model')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td></tr>
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<tr class="memitem:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1_screening_model" id="r_adef175acdbd911527f56a1f1592579a7"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a> ()=default</td></tr>
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<tr class="separator:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1_screening_model"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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Private Types</h2></td></tr>
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<tr class="memitem:a51119d705267e0b415aae8b4881d8c96" id="r_a51119d705267e0b415aae8b4881d8c96"><td class="memItemLeft" align="right" valign="top">using </td><td class="memItemRight" valign="bottom"><a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> = CppAD::AD<double></td></tr>
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Private Member Functions</h2></td></tr>
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<tr class="memitem:a6c93b72c8ca34623127f0846d8dee50a" id="r_a6c93b72c8ca34623127f0846d8dee50a"><td class="memTemplParams" colspan="2">template<typename T> </td></tr>
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<tr class="memitem:a6c93b72c8ca34623127f0846d8dee50a"><td class="memTemplItemLeft" align="right" valign="top">std::vector< T > </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="#a6c93b72c8ca34623127f0846d8dee50a">calculateFactors_impl</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< T > &Y, const T T9, const T rho) const</td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
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Additional Inherited Members</h2></td></tr>
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<tr class="inherit_header pub_types_classgridfire_1_1screening_1_1_screening_model"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_types_classgridfire_1_1screening_1_1_screening_model')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td></tr>
|
||||
<tr class="memitem:a107ff2897f040d6f27f69d56a0bdd28d inherit pub_types_classgridfire_1_1screening_1_1_screening_model" id="r_a107ff2897f040d6f27f69d56a0bdd28d"><td class="memItemLeft" align="right" valign="top">using </td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> = CppAD::AD<double></td></tr>
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<tr class="separator:a107ff2897f040d6f27f69d56a0bdd28d inherit pub_types_classgridfire_1_1screening_1_1_screening_model"><td class="memSeparator" colspan="2"> </td></tr>
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</table>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
|
||||
<div class="textblock">
|
||||
<p class="definition">Definition at line <a class="el" href="screening__bare_8h_source.html#l00009">9</a> of file <a class="el" href="screening__bare_8h_source.html">screening_bare.h</a>.</p>
|
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</div><h2 class="groupheader">Member Typedef Documentation</h2>
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||||
<a id="a51119d705267e0b415aae8b4881d8c96" name="a51119d705267e0b415aae8b4881d8c96"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a51119d705267e0b415aae8b4881d8c96">◆ </a></span>ADDouble</h2>
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<td class="memname">using <a class="el" href="#a51119d705267e0b415aae8b4881d8c96">gridfire::screening::BareScreeningModel::ADDouble</a> = CppAD::AD<double></td>
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<span class="mlabels"><span class="mlabel private">private</span></span> </td>
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<p class="definition">Definition at line <a class="el" href="screening__bare_8h_source.html#l00010">10</a> of file <a class="el" href="screening__bare_8h_source.html">screening_bare.h</a>.</p>
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<h2 class="groupheader">Member Function Documentation</h2>
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<a id="a6c93b72c8ca34623127f0846d8dee50a" name="a6c93b72c8ca34623127f0846d8dee50a"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a6c93b72c8ca34623127f0846d8dee50a">◆ </a></span>calculateFactors_impl()</h2>
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template<typename T> </div>
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<td class="memname">std::vector< T > gridfire::screening::BareScreeningModel::calculateFactors_impl </td>
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||||
<td>(</td>
|
||||
<td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &</td> <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
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<td class="paramtype">const std::vector< fourdst::atomic::Species > &</td> <td class="paramname"><span class="paramname"><em>species</em></span>, </td>
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<td class="paramtype">const T</td> <td class="paramname"><span class="paramname"><em>rho</em></span> ) const</td>
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<span class="mlabels"><span class="mlabel nodiscard">nodiscard</span><span class="mlabel private">private</span></span> </td>
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<p class="definition">Definition at line <a class="el" href="screening__bare_8h_source.html#l00039">39</a> of file <a class="el" href="screening__bare_8h_source.html">screening_bare.h</a>.</p>
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<a id="ac5647d633cd5bbd7cb5136b7fa4cad99" name="ac5647d633cd5bbd7cb5136b7fa4cad99"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#ac5647d633cd5bbd7cb5136b7fa4cad99">◆ </a></span>calculateScreeningFactors() <span class="overload">[1/2]</span></h2>
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<td class="memname">std::vector< <a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> > gridfire::screening::BareScreeningModel::calculateScreeningFactors </td>
|
||||
<td>(</td>
|
||||
<td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &</td> <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
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<td class="paramtype">const std::vector< fourdst::atomic::Species > &</td> <td class="paramname"><span class="paramname"><em>species</em></span>, </td>
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<td class="paramtype">const std::vector< <a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> > &</td> <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
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<td class="paramtype">const <a class="el" href="#a51119d705267e0b415aae8b4881d8c96">ADDouble</a></td> <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
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||||
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<p>Implements <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22">gridfire::screening::ScreeningModel</a>.</p>
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<p class="definition">Definition at line <a class="el" href="screening__bare_8cpp_source.html#l00012">12</a> of file <a class="el" href="screening__bare_8cpp_source.html">screening_bare.cpp</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#ac35ad34c5da7e1b5087552aa5c83fe60">◆ </a></span>calculateScreeningFactors() <span class="overload">[2/2]</span></h2>
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<p>Implements <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde">gridfire::screening::ScreeningModel</a>.</p>
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<p class="definition">Definition at line <a class="el" href="screening__bare_8cpp_source.html#l00022">22</a> of file <a class="el" href="screening__bare_8cpp_source.html">screening_bare.cpp</a>.</p>
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<hr/>The documentation for this class was generated from the following files:<ul>
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<li>src/network/include/gridfire/screening/<a class="el" href="screening__bare_8h_source.html">screening_bare.h</a></li>
|
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<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td><td class="entry"></td></tr>
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<p><code>#include <<a class="el" href="screening__abstract_8h_source.html">screening_abstract.h</a>></code></p>
|
||||
<div class="dynheader">
|
||||
Inheritance diagram for gridfire::screening::ScreeningModel:</div>
|
||||
<div class="dyncontent">
|
||||
<div class="center">
|
||||
<img src="classgridfire_1_1screening_1_1_screening_model.png" usemap="#gridfire::screening::ScreeningModel_map" alt=""/>
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|
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<area href="classgridfire_1_1screening_1_1_weak_screening_model.html" alt="gridfire::screening::WeakScreeningModel" shape="rect" coords="255,56,500,80"/>
|
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</map>
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</div></div>
|
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<table class="memberdecls">
|
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-types" name="pub-types"></a>
|
||||
Public Types</h2></td></tr>
|
||||
<tr class="memitem:a107ff2897f040d6f27f69d56a0bdd28d" id="r_a107ff2897f040d6f27f69d56a0bdd28d"><td class="memItemLeft" align="right" valign="top">using </td><td class="memItemRight" valign="bottom"><a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> = CppAD::AD<double></td></tr>
|
||||
<tr class="separator:a107ff2897f040d6f27f69d56a0bdd28d"><td class="memSeparator" colspan="2"> </td></tr>
|
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</table><table class="memberdecls">
|
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
|
||||
Public Member Functions</h2></td></tr>
|
||||
<tr class="memitem:adef175acdbd911527f56a1f1592579a7" id="r_adef175acdbd911527f56a1f1592579a7"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a> ()=default</td></tr>
|
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<tr class="separator:adef175acdbd911527f56a1f1592579a7"><td class="memSeparator" colspan="2"> </td></tr>
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||||
<tr class="memitem:aaec9184d80c86a2d8674e395dad81bde" id="r_aaec9184d80c86a2d8674e395dad81bde"><td class="memItemLeft" align="right" valign="top">virtual std::vector< double > </td><td class="memItemRight" valign="bottom"><a class="el" href="#aaec9184d80c86a2d8674e395dad81bde">calculateScreeningFactors</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const =0</td></tr>
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<tr class="separator:aaec9184d80c86a2d8674e395dad81bde"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:a6c381a823cb9c1680d3e9c846da4ae22" id="r_a6c381a823cb9c1680d3e9c846da4ae22"><td class="memItemLeft" align="right" valign="top">virtual std::vector< <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="#a6c381a823cb9c1680d3e9c846da4ae22">calculateScreeningFactors</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> > &Y, const <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> T9, const <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> rho) const =0</td></tr>
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||||
<tr class="separator:a6c381a823cb9c1680d3e9c846da4ae22"><td class="memSeparator" colspan="2"> </td></tr>
|
||||
</table>
|
||||
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
|
||||
<div class="textblock">
|
||||
<p class="definition">Definition at line <a class="el" href="screening__abstract_8h_source.html#l00012">12</a> of file <a class="el" href="screening__abstract_8h_source.html">screening_abstract.h</a>.</p>
|
||||
</div><h2 class="groupheader">Member Typedef Documentation</h2>
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||||
<a id="a107ff2897f040d6f27f69d56a0bdd28d" name="a107ff2897f040d6f27f69d56a0bdd28d"></a>
|
||||
<h2 class="memtitle"><span class="permalink"><a href="#a107ff2897f040d6f27f69d56a0bdd28d">◆ </a></span>ADDouble</h2>
|
||||
|
||||
<div class="memitem">
|
||||
<div class="memproto">
|
||||
<table class="memname">
|
||||
<tr>
|
||||
<td class="memname">using <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">gridfire::screening::ScreeningModel::ADDouble</a> = CppAD::AD<double></td>
|
||||
</tr>
|
||||
</table>
|
||||
</div><div class="memdoc">
|
||||
|
||||
<p class="definition">Definition at line <a class="el" href="screening__abstract_8h_source.html#l00014">14</a> of file <a class="el" href="screening__abstract_8h_source.html">screening_abstract.h</a>.</p>
|
||||
|
||||
</div>
|
||||
</div>
|
||||
<h2 class="groupheader">Constructor & Destructor Documentation</h2>
|
||||
<a id="adef175acdbd911527f56a1f1592579a7" name="adef175acdbd911527f56a1f1592579a7"></a>
|
||||
<h2 class="memtitle"><span class="permalink"><a href="#adef175acdbd911527f56a1f1592579a7">◆ </a></span>~ScreeningModel()</h2>
|
||||
|
||||
<div class="memitem">
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||||
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||||
<table class="mlabels">
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||||
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||||
<td class="mlabels-left">
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||||
<table class="memname">
|
||||
<tr>
|
||||
<td class="memname">virtual gridfire::screening::ScreeningModel::~ScreeningModel </td>
|
||||
<td>(</td>
|
||||
<td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
|
||||
<td></td>
|
||||
</tr>
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||||
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|
||||
<td class="mlabels-right">
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||||
<span class="mlabels"><span class="mlabel virtual">virtual</span><span class="mlabel default">default</span></span> </td>
|
||||
</tr>
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</table>
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||||
</div><div class="memdoc">
|
||||
|
||||
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||||
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||||
<h2 class="groupheader">Member Function Documentation</h2>
|
||||
<a id="a6c381a823cb9c1680d3e9c846da4ae22" name="a6c381a823cb9c1680d3e9c846da4ae22"></a>
|
||||
<h2 class="memtitle"><span class="permalink"><a href="#a6c381a823cb9c1680d3e9c846da4ae22">◆ </a></span>calculateScreeningFactors() <span class="overload">[1/2]</span></h2>
|
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||||
<div class="memitem">
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||||
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||||
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||||
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||||
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|
||||
<td class="memname">virtual std::vector< <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> > gridfire::screening::ScreeningModel::calculateScreeningFactors </td>
|
||||
<td>(</td>
|
||||
<td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &</td> <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td class="paramkey"></td>
|
||||
<td></td>
|
||||
<td class="paramtype">const std::vector< fourdst::atomic::Species > &</td> <td class="paramname"><span class="paramname"><em>species</em></span>, </td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td class="paramkey"></td>
|
||||
<td></td>
|
||||
<td class="paramtype">const std::vector< <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> > &</td> <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td class="paramkey"></td>
|
||||
<td></td>
|
||||
<td class="paramtype">const <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a></td> <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td class="paramkey"></td>
|
||||
<td></td>
|
||||
<td class="paramtype">const <a class="el" href="#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a></td> <td class="paramname"><span class="paramname"><em>rho</em></span> ) const</td>
|
||||
</tr>
|
||||
</table>
|
||||
</td>
|
||||
<td class="mlabels-right">
|
||||
<span class="mlabels"><span class="mlabel pure-virtual">pure virtual</span></span> </td>
|
||||
</tr>
|
||||
</table>
|
||||
</div><div class="memdoc">
|
||||
|
||||
<p>Implemented in <a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac5647d633cd5bbd7cb5136b7fa4cad99">gridfire::screening::BareScreeningModel</a>, and <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#ac6bc78769670a460af1ff88284cb8ad4">gridfire::screening::WeakScreeningModel</a>.</p>
|
||||
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||||
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||||
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||||
<a id="aaec9184d80c86a2d8674e395dad81bde" name="aaec9184d80c86a2d8674e395dad81bde"></a>
|
||||
<h2 class="memtitle"><span class="permalink"><a href="#aaec9184d80c86a2d8674e395dad81bde">◆ </a></span>calculateScreeningFactors() <span class="overload">[2/2]</span></h2>
|
||||
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||||
<div class="memitem">
|
||||
<div class="memproto">
|
||||
<table class="mlabels">
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||||
<tr>
|
||||
<td class="mlabels-left">
|
||||
<table class="memname">
|
||||
<tr>
|
||||
<td class="memname">virtual std::vector< double > gridfire::screening::ScreeningModel::calculateScreeningFactors </td>
|
||||
<td>(</td>
|
||||
<td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &</td> <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td class="paramkey"></td>
|
||||
<td></td>
|
||||
<td class="paramtype">const std::vector< fourdst::atomic::Species > &</td> <td class="paramname"><span class="paramname"><em>species</em></span>, </td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td class="paramkey"></td>
|
||||
<td></td>
|
||||
<td class="paramtype">const std::vector< double > &</td> <td class="paramname"><span class="paramname"><em>Y</em></span>, </td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td class="paramkey"></td>
|
||||
<td></td>
|
||||
<td class="paramtype">const double</td> <td class="paramname"><span class="paramname"><em>T9</em></span>, </td>
|
||||
</tr>
|
||||
<tr>
|
||||
<td class="paramkey"></td>
|
||||
<td></td>
|
||||
<td class="paramtype">const double</td> <td class="paramname"><span class="paramname"><em>rho</em></span> ) const</td>
|
||||
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|
||||
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|
||||
</td>
|
||||
<td class="mlabels-right">
|
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<span class="mlabels"><span class="mlabel pure-virtual">pure virtual</span></span> </td>
|
||||
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||||
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||||
|
||||
<p>Implemented in <a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60">gridfire::screening::BareScreeningModel</a>, and <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c">gridfire::screening::WeakScreeningModel</a>.</p>
|
||||
|
||||
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||||
</div>
|
||||
<hr/>The documentation for this class was generated from the following file:<ul>
|
||||
<li>src/network/include/gridfire/screening/<a class="el" href="screening__abstract_8h_source.html">screening_abstract.h</a></li>
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<p>This is the complete list of members for <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">gridfire::screening::WeakScreeningModel</a>, including all inherited members.</p>
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<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> typedef</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td><td class="entry"></td></tr>
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<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#a2695206d46b9d2c2503f8e58c44df88f">calculateFactors_impl</a>(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< T > &Y, const T T9, const T rho) const</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">gridfire::screening::WeakScreeningModel</a></td><td class="entry"><span class="mlabel">private</span></td></tr>
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<tr class="even"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c">calculateScreeningFactors</a>(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">gridfire::screening::WeakScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#ac6bc78769670a460af1ff88284cb8ad4">calculateScreeningFactors</a>(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< CppAD::AD< double > > &Y, const CppAD::AD< double > T9, const CppAD::AD< double > rho) const override</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">gridfire::screening::WeakScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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<tr class="odd"><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a>()=default</td><td class="entry"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td><td class="entry"><span class="mlabel">virtual</span></td></tr>
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<a href="#pub-methods">Public Member Functions</a> |
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<a href="classgridfire_1_1screening_1_1_weak_screening_model-members.html">List of all members</a> </div>
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<div class="headertitle"><div class="title">gridfire::screening::WeakScreeningModel Class Reference<span class="mlabels"><span class="mlabel final">final</span></span></div></div>
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<p><code>#include <<a class="el" href="screening__weak_8h_source.html">screening_weak.h</a>></code></p>
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Inheritance diagram for gridfire::screening::WeakScreeningModel:</div>
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Public Member Functions</h2></td></tr>
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<tr class="memitem:afbaeaefe6b3ab3ecf81889ddc1cff76c" id="r_afbaeaefe6b3ab3ecf81889ddc1cff76c"><td class="memItemLeft" align="right" valign="top">std::vector< double > </td><td class="memItemRight" valign="bottom"><a class="el" href="#afbaeaefe6b3ab3ecf81889ddc1cff76c">calculateScreeningFactors</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const override</td></tr>
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<tr class="separator:afbaeaefe6b3ab3ecf81889ddc1cff76c"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ac6bc78769670a460af1ff88284cb8ad4" id="r_ac6bc78769670a460af1ff88284cb8ad4"><td class="memItemLeft" align="right" valign="top">std::vector< CppAD::AD< double > > </td><td class="memItemRight" valign="bottom"><a class="el" href="#ac6bc78769670a460af1ff88284cb8ad4">calculateScreeningFactors</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< CppAD::AD< double > > &Y, const CppAD::AD< double > T9, const CppAD::AD< double > rho) const override</td></tr>
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<tr class="separator:ac6bc78769670a460af1ff88284cb8ad4"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="inherit_header pub_methods_classgridfire_1_1screening_1_1_screening_model"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_methods_classgridfire_1_1screening_1_1_screening_model')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td></tr>
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<tr class="memitem:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1_screening_model" id="r_adef175acdbd911527f56a1f1592579a7"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a> ()=default</td></tr>
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<tr class="separator:adef175acdbd911527f56a1f1592579a7 inherit pub_methods_classgridfire_1_1screening_1_1_screening_model"><td class="memSeparator" colspan="2"> </td></tr>
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Private Member Functions</h2></td></tr>
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<tr class="memitem:a2695206d46b9d2c2503f8e58c44df88f" id="r_a2695206d46b9d2c2503f8e58c44df88f"><td class="memTemplParams" colspan="2">template<typename T> </td></tr>
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<tr class="memitem:a2695206d46b9d2c2503f8e58c44df88f"><td class="memTemplItemLeft" align="right" valign="top">std::vector< T > </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="#a2695206d46b9d2c2503f8e58c44df88f">calculateFactors_impl</a> (const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< T > &Y, const T T9, const T rho) const</td></tr>
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Private Attributes</h2></td></tr>
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<tr class="memitem:a0a4d7d6d36dbe7b764b613d34f18386f" id="r_a0a4d7d6d36dbe7b764b613d34f18386f"><td class="memItemLeft" align="right" valign="top">quill::Logger * </td><td class="memItemRight" valign="bottom"><a class="el" href="#a0a4d7d6d36dbe7b764b613d34f18386f">m_logger</a> = fourdst::logging::LogManager::getInstance().getLogger("log")</td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="inherited" name="inherited"></a>
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Additional Inherited Members</h2></td></tr>
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<tr class="inherit_header pub_types_classgridfire_1_1screening_1_1_screening_model"><td colspan="2" onclick="javascript:dynsection.toggleInherit('pub_types_classgridfire_1_1screening_1_1_screening_model')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></td></tr>
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<tr class="memitem:a107ff2897f040d6f27f69d56a0bdd28d inherit pub_types_classgridfire_1_1screening_1_1_screening_model" id="r_a107ff2897f040d6f27f69d56a0bdd28d"><td class="memItemLeft" align="right" valign="top">using </td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> = CppAD::AD<double></td></tr>
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<tr class="separator:a107ff2897f040d6f27f69d56a0bdd28d inherit pub_types_classgridfire_1_1screening_1_1_screening_model"><td class="memSeparator" colspan="2"> </td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
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<div class="textblock">
|
||||
<p class="definition">Definition at line <a class="el" href="screening__weak_8h_source.html#l00013">13</a> of file <a class="el" href="screening__weak_8h_source.html">screening_weak.h</a>.</p>
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</div><h2 class="groupheader">Member Function Documentation</h2>
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<a id="a2695206d46b9d2c2503f8e58c44df88f" name="a2695206d46b9d2c2503f8e58c44df88f"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#a2695206d46b9d2c2503f8e58c44df88f">◆ </a></span>calculateFactors_impl()</h2>
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<td class="memname">std::vector< T > gridfire::screening::WeakScreeningModel::calculateFactors_impl </td>
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<td>(</td>
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<td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &</td> <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
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<td class="paramtype">const std::vector< fourdst::atomic::Species > &</td> <td class="paramname"><span class="paramname"><em>species</em></span>, </td>
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<td class="paramtype">const T</td> <td class="paramname"><span class="paramname"><em>rho</em></span> ) const</td>
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<p class="definition">Definition at line <a class="el" href="screening__weak_8h_source.html#l00045">45</a> of file <a class="el" href="screening__weak_8h_source.html">screening_weak.h</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#ac6bc78769670a460af1ff88284cb8ad4">◆ </a></span>calculateScreeningFactors() <span class="overload">[1/2]</span></h2>
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<td class="memname">std::vector< <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> > gridfire::screening::WeakScreeningModel::calculateScreeningFactors </td>
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<td>(</td>
|
||||
<td class="paramtype">const <a class="el" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &</td> <td class="paramname"><span class="paramname"><em>reactions</em></span>, </td>
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|
||||
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||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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<p>Implements <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22">gridfire::screening::ScreeningModel</a>.</p>
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<p class="definition">Definition at line <a class="el" href="screening__weak_8cpp_source.html#l00012">12</a> of file <a class="el" href="screening__weak_8cpp_source.html">screening_weak.cpp</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#afbaeaefe6b3ab3ecf81889ddc1cff76c">◆ </a></span>calculateScreeningFactors() <span class="overload">[2/2]</span></h2>
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||||
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|
||||
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|
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||||
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|
||||
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||||
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|
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||||
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||||
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||||
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<p>Implements <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde">gridfire::screening::ScreeningModel</a>.</p>
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<p class="definition">Definition at line <a class="el" href="screening__weak_8cpp_source.html#l00022">22</a> of file <a class="el" href="screening__weak_8cpp_source.html">screening_weak.cpp</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a0a4d7d6d36dbe7b764b613d34f18386f">◆ </a></span>m_logger</h2>
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<td class="memname">quill::Logger* gridfire::screening::WeakScreeningModel::m_logger = fourdst::logging::LogManager::getInstance().getLogger("log")</td>
|
||||
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|
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|
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|
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<p class="definition">Definition at line <a class="el" href="screening__weak_8h_source.html#l00031">31</a> of file <a class="el" href="screening__weak_8h_source.html">screening_weak.h</a>.</p>
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|
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||||
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|
||||
<hr/>The documentation for this class was generated from the following files:<ul>
|
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<li>src/network/include/gridfire/screening/<a class="el" href="screening__weak_8h_source.html">screening_weak.h</a></li>
|
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<a href="engine__defined_8cpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="preprocessor">#include "<a class="code" href="engine__defined_8h.html">gridfire/engine/views/engine_defined.h</a>"</span></div>
|
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<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span> </div>
|
||||
<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="preprocessor">#include "quill/LogMacros.h"</span></div>
|
||||
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span> </div>
|
||||
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacegridfire.html">gridfire</a> {</div>
|
||||
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span> <span class="keyword">using </span>fourdst::atomic::Species;</div>
|
||||
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span> </div>
|
||||
<div class="foldopen" id="foldopen00008" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd"> 8</a></span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd">FileDefinedEngineView::FileDefinedEngineView</a>(</div>
|
||||
<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> &baseEngine,</div>
|
||||
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span> <span class="keyword">const</span> std::string &fileName,</div>
|
||||
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1io_1_1_network_file_parser.html">io::NetworkFileParser</a> &parser</div>
|
||||
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span> ):</div>
|
||||
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>(baseEngine),</div>
|
||||
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b">m_fileName</a>(fileName),</div>
|
||||
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500">m_parser</a>(parser),</div>
|
||||
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>(baseEngine.<a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a8bb583e039b49608272997ed2d3387fa">getNetworkSpecies</a>()),</div>
|
||||
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a>(baseEngine.<a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a5bbea17b69cc8f81bc251a04f4435a0c">getNetworkReactions</a>()) {</div>
|
||||
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a3b5162b7be35405285ef9f825ec2663b">buildFromFile</a>(fileName);</div>
|
||||
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span> </div>
|
||||
<div class="foldopen" id="foldopen00021" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a4c8b273c5cb3d470567c5691b68493a3"> 21</a></span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a> & <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a4c8b273c5cb3d470567c5691b68493a3">FileDefinedEngineView::getBaseEngine</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>;</div>
|
||||
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span> </div>
|
||||
<div class="foldopen" id="foldopen00025" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a8bb583e039b49608272997ed2d3387fa"> 25</a></span> <span class="keyword">const</span> std::vector<Species> & <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a8bb583e039b49608272997ed2d3387fa">FileDefinedEngineView::getNetworkSpecies</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>;</div>
|
||||
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> </div>
|
||||
<div class="foldopen" id="foldopen00029" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a2c1d88b06568f9ea4c65e794d012ebfb"> 29</a></span> <a class="code hl_struct" href="structgridfire_1_1_step_derivatives.html">StepDerivatives<double></a> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a2c1d88b06568f9ea4c65e794d012ebfb">FileDefinedEngineView::calculateRHSAndEnergy</a>(</div>
|
||||
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span> <span class="keyword">const</span> std::vector<double> &Y_defined,</div>
|
||||
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span> )<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">validateNetworkState</a>();</div>
|
||||
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span> </div>
|
||||
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span> <span class="keyword">const</span> <span class="keyword">auto</span> Y_full = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ac231044e37e0962f664f8465e1ccb022">mapViewToFull</a>(Y_defined);</div>
|
||||
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> <span class="keyword">const</span> <span class="keyword">auto</span> [dydt, nuclearEnergyGenerationRate] = <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.calculateRHSAndEnergy(Y_full, T9, rho);</div>
|
||||
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> </div>
|
||||
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span> <a class="code hl_struct" href="structgridfire_1_1_step_derivatives.html">StepDerivatives<double></a> definedResults;</div>
|
||||
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> definedResults.<a class="code hl_variable" href="structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008">nuclearEnergyGenerationRate</a> = nuclearEnergyGenerationRate;</div>
|
||||
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span> definedResults.<a class="code hl_variable" href="structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d">dydt</a> = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a97e5ee4651dbe6754678fe96e4702fee">mapFullToView</a>(dydt);</div>
|
||||
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> <span class="keywordflow">return</span> definedResults;</div>
|
||||
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> </div>
|
||||
<div class="foldopen" id="foldopen00045" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a48b2451f96b8f5511ffc4071519c0810"> 45</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a48b2451f96b8f5511ffc4071519c0810">FileDefinedEngineView::generateJacobianMatrix</a>(</div>
|
||||
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span> <span class="keyword">const</span> std::vector<double> &Y_defined,</div>
|
||||
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> ) {</div>
|
||||
<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">validateNetworkState</a>();</div>
|
||||
<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> </div>
|
||||
<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span> <span class="keyword">const</span> <span class="keyword">auto</span> Y_full = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ac231044e37e0962f664f8465e1ccb022">mapViewToFull</a>(Y_defined);</div>
|
||||
<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.generateJacobianMatrix(Y_full, T9, rho);</div>
|
||||
<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span> </div>
|
||||
<div class="foldopen" id="foldopen00056" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a0ef8804780d13bbfce0856237bb00470"> 56</a></span> <span class="keywordtype">double</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a0ef8804780d13bbfce0856237bb00470">FileDefinedEngineView::getJacobianMatrixEntry</a>(</div>
|
||||
<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"> 57</span> <span class="keyword">const</span> <span class="keywordtype">int</span> i_defined,</div>
|
||||
<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span> <span class="keyword">const</span> <span class="keywordtype">int</span> j_defined</div>
|
||||
<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span> )<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">validateNetworkState</a>();</div>
|
||||
<div class="line"><a id="l00061" name="l00061"></a><span class="lineno"> 61</span> </div>
|
||||
<div class="line"><a id="l00062" name="l00062"></a><span class="lineno"> 62</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> i_full = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a8d2c6b9a33b9c8c172bbd2c2e2e9ffaf">mapViewToFullSpeciesIndex</a>(i_defined);</div>
|
||||
<div class="line"><a id="l00063" name="l00063"></a><span class="lineno"> 63</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> j_full = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a8d2c6b9a33b9c8c172bbd2c2e2e9ffaf">mapViewToFullSpeciesIndex</a>(j_defined);</div>
|
||||
<div class="line"><a id="l00064" name="l00064"></a><span class="lineno"> 64</span> </div>
|
||||
<div class="line"><a id="l00065" name="l00065"></a><span class="lineno"> 65</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.getJacobianMatrixEntry(i_full, j_full);</div>
|
||||
<div class="line"><a id="l00066" name="l00066"></a><span class="lineno"> 66</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00067" name="l00067"></a><span class="lineno"> 67</span> </div>
|
||||
<div class="foldopen" id="foldopen00068" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00068" name="l00068"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a27a5163157cc15c4cb3b99a5d3564dbd"> 68</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a27a5163157cc15c4cb3b99a5d3564dbd">FileDefinedEngineView::generateStoichiometryMatrix</a>() {</div>
|
||||
<div class="line"><a id="l00069" name="l00069"></a><span class="lineno"> 69</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">validateNetworkState</a>();</div>
|
||||
<div class="line"><a id="l00070" name="l00070"></a><span class="lineno"> 70</span> </div>
|
||||
<div class="line"><a id="l00071" name="l00071"></a><span class="lineno"> 71</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.generateStoichiometryMatrix();</div>
|
||||
<div class="line"><a id="l00072" name="l00072"></a><span class="lineno"> 72</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00073" name="l00073"></a><span class="lineno"> 73</span> </div>
|
||||
<div class="foldopen" id="foldopen00074" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00074" name="l00074"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a9da9224f5c99a5068f3d8cbf066e4693"> 74</a></span> <span class="keywordtype">int</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a9da9224f5c99a5068f3d8cbf066e4693">FileDefinedEngineView::getStoichiometryMatrixEntry</a>(</div>
|
||||
<div class="line"><a id="l00075" name="l00075"></a><span class="lineno"> 75</span> <span class="keyword">const</span> <span class="keywordtype">int</span> speciesIndex_defined,</div>
|
||||
<div class="line"><a id="l00076" name="l00076"></a><span class="lineno"> 76</span> <span class="keyword">const</span> <span class="keywordtype">int</span> reactionIndex_defined</div>
|
||||
<div class="line"><a id="l00077" name="l00077"></a><span class="lineno"> 77</span> )<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00078" name="l00078"></a><span class="lineno"> 78</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">validateNetworkState</a>();</div>
|
||||
<div class="line"><a id="l00079" name="l00079"></a><span class="lineno"> 79</span> </div>
|
||||
<div class="line"><a id="l00080" name="l00080"></a><span class="lineno"> 80</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> i_full = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a8d2c6b9a33b9c8c172bbd2c2e2e9ffaf">mapViewToFullSpeciesIndex</a>(speciesIndex_defined);</div>
|
||||
<div class="line"><a id="l00081" name="l00081"></a><span class="lineno"> 81</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> j_full = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae7d6f0ff9076d59d1245c047bbd1bdb9">mapViewToFullReactionIndex</a>(reactionIndex_defined);</div>
|
||||
<div class="line"><a id="l00082" name="l00082"></a><span class="lineno"> 82</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.getStoichiometryMatrixEntry(i_full, j_full);</div>
|
||||
<div class="line"><a id="l00083" name="l00083"></a><span class="lineno"> 83</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00084" name="l00084"></a><span class="lineno"> 84</span> </div>
|
||||
<div class="foldopen" id="foldopen00085" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00085" name="l00085"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#ac371fb66fd0a76a04df204c9dd9a05ef"> 85</a></span> <span class="keywordtype">double</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ac371fb66fd0a76a04df204c9dd9a05ef">FileDefinedEngineView::calculateMolarReactionFlow</a>(</div>
|
||||
<div class="line"><a id="l00086" name="l00086"></a><span class="lineno"> 86</span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a> &<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>,</div>
|
||||
<div class="line"><a id="l00087" name="l00087"></a><span class="lineno"> 87</span> <span class="keyword">const</span> std::vector<double> &Y_defined,</div>
|
||||
<div class="line"><a id="l00088" name="l00088"></a><span class="lineno"> 88</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00089" name="l00089"></a><span class="lineno"> 89</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00090" name="l00090"></a><span class="lineno"> 90</span> )<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00091" name="l00091"></a><span class="lineno"> 91</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">validateNetworkState</a>();</div>
|
||||
<div class="line"><a id="l00092" name="l00092"></a><span class="lineno"> 92</span> </div>
|
||||
<div class="line"><a id="l00093" name="l00093"></a><span class="lineno"> 93</span> <span class="keywordflow">if</span> (!<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a>.contains(<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>)) {</div>
|
||||
<div class="line"><a id="l00094" name="l00094"></a><span class="lineno"> 94</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Reaction '{}' is not part of the active reactions in the file defined engine view."</span>, <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.id());</div>
|
||||
<div class="line"><a id="l00095" name="l00095"></a><span class="lineno"> 95</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a> -> flush_log();</div>
|
||||
<div class="line"><a id="l00096" name="l00096"></a><span class="lineno"> 96</span> <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Reaction not found in active reactions: "</span> + std::string(<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.id()));</div>
|
||||
<div class="line"><a id="l00097" name="l00097"></a><span class="lineno"> 97</span> }</div>
|
||||
<div class="line"><a id="l00098" name="l00098"></a><span class="lineno"> 98</span> <span class="keyword">const</span> <span class="keyword">auto</span> Y_full = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ac231044e37e0962f664f8465e1ccb022">mapViewToFull</a>(Y_defined);</div>
|
||||
<div class="line"><a id="l00099" name="l00099"></a><span class="lineno"> 99</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.calculateMolarReactionFlow(<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>, Y_full, T9, rho);</div>
|
||||
<div class="line"><a id="l00100" name="l00100"></a><span class="lineno"> 100</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00101" name="l00101"></a><span class="lineno"> 101</span> </div>
|
||||
<div class="foldopen" id="foldopen00102" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00102" name="l00102"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a5bbea17b69cc8f81bc251a04f4435a0c"> 102</a></span> <span class="keyword">const</span> <a class="code hl_typedef" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> & <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a5bbea17b69cc8f81bc251a04f4435a0c">FileDefinedEngineView::getNetworkReactions</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00103" name="l00103"></a><span class="lineno"> 103</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">validateNetworkState</a>();</div>
|
||||
<div class="line"><a id="l00104" name="l00104"></a><span class="lineno"> 104</span> </div>
|
||||
<div class="line"><a id="l00105" name="l00105"></a><span class="lineno"> 105</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a>;</div>
|
||||
<div class="line"><a id="l00106" name="l00106"></a><span class="lineno"> 106</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00107" name="l00107"></a><span class="lineno"> 107</span> </div>
|
||||
<div class="foldopen" id="foldopen00108" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00108" name="l00108"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#ace3c6ea4841318c08695973ab3dcddc6"> 108</a></span> std::unordered_map<Species, double> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ace3c6ea4841318c08695973ab3dcddc6">FileDefinedEngineView::getSpeciesTimescales</a>(</div>
|
||||
<div class="line"><a id="l00109" name="l00109"></a><span class="lineno"> 109</span> <span class="keyword">const</span> std::vector<double> &Y_defined,</div>
|
||||
<div class="line"><a id="l00110" name="l00110"></a><span class="lineno"> 110</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00111" name="l00111"></a><span class="lineno"> 111</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00112" name="l00112"></a><span class="lineno"> 112</span> )<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00113" name="l00113"></a><span class="lineno"> 113</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">validateNetworkState</a>();</div>
|
||||
<div class="line"><a id="l00114" name="l00114"></a><span class="lineno"> 114</span> </div>
|
||||
<div class="line"><a id="l00115" name="l00115"></a><span class="lineno"> 115</span> <span class="keyword">const</span> <span class="keyword">auto</span> Y_full = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ac231044e37e0962f664f8465e1ccb022">mapViewToFull</a>(Y_defined);</div>
|
||||
<div class="line"><a id="l00116" name="l00116"></a><span class="lineno"> 116</span> <span class="keyword">const</span> <span class="keyword">auto</span> fullTimescales = <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.getSpeciesTimescales(Y_full, T9, rho);</div>
|
||||
<div class="line"><a id="l00117" name="l00117"></a><span class="lineno"> 117</span> </div>
|
||||
<div class="line"><a id="l00118" name="l00118"></a><span class="lineno"> 118</span> std::unordered_map<Species, double> definedTimescales;</div>
|
||||
<div class="line"><a id="l00119" name="l00119"></a><span class="lineno"> 119</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& active_species : <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>) {</div>
|
||||
<div class="line"><a id="l00120" name="l00120"></a><span class="lineno"> 120</span> <span class="keywordflow">if</span> (fullTimescales.contains(active_species)) {</div>
|
||||
<div class="line"><a id="l00121" name="l00121"></a><span class="lineno"> 121</span> definedTimescales[active_species] = fullTimescales.at(active_species);</div>
|
||||
<div class="line"><a id="l00122" name="l00122"></a><span class="lineno"> 122</span> }</div>
|
||||
<div class="line"><a id="l00123" name="l00123"></a><span class="lineno"> 123</span> }</div>
|
||||
<div class="line"><a id="l00124" name="l00124"></a><span class="lineno"> 124</span> <span class="keywordflow">return</span> definedTimescales;</div>
|
||||
<div class="line"><a id="l00125" name="l00125"></a><span class="lineno"> 125</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00126" name="l00126"></a><span class="lineno"> 126</span> </div>
|
||||
<div class="foldopen" id="foldopen00127" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00127" name="l00127"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#ace3568eadaba69e7357b4386c5ca3eb0"> 127</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ace3568eadaba69e7357b4386c5ca3eb0">FileDefinedEngineView::update</a>(<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a> &netIn) {</div>
|
||||
<div class="line"><a id="l00128" name="l00128"></a><span class="lineno"> 128</span> <span class="keywordflow">if</span> (<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a6e421bc748933be31bed9ff53f12b595">m_isStale</a>) {</div>
|
||||
<div class="line"><a id="l00129" name="l00129"></a><span class="lineno"> 129</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a3b5162b7be35405285ef9f825ec2663b">buildFromFile</a>(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b">m_fileName</a>);</div>
|
||||
<div class="line"><a id="l00130" name="l00130"></a><span class="lineno"> 130</span> }</div>
|
||||
<div class="line"><a id="l00131" name="l00131"></a><span class="lineno"> 131</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00132" name="l00132"></a><span class="lineno"> 132</span> </div>
|
||||
<div class="foldopen" id="foldopen00133" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00133" name="l00133"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a92f14da849e99d07c1ff1347addb9263"> 133</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a92f14da849e99d07c1ff1347addb9263">FileDefinedEngineView::setNetworkFile</a>(<span class="keyword">const</span> std::string &fileName) {</div>
|
||||
<div class="line"><a id="l00134" name="l00134"></a><span class="lineno"> 134</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a6e421bc748933be31bed9ff53f12b595">m_isStale</a> = <span class="keyword">true</span>;</div>
|
||||
<div class="line"><a id="l00135" name="l00135"></a><span class="lineno"> 135</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b">m_fileName</a> = fileName;</div>
|
||||
<div class="line"><a id="l00136" name="l00136"></a><span class="lineno"> 136</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"File '{}' set to '{}'. FileDefinedNetworkView is now stale! You MUST call update() before you use it!"</span>, <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b">m_fileName</a>, fileName);</div>
|
||||
<div class="line"><a id="l00137" name="l00137"></a><span class="lineno"> 137</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00138" name="l00138"></a><span class="lineno"> 138</span> </div>
|
||||
<div class="foldopen" id="foldopen00139" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00139" name="l00139"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#ad96bbee6d3d37b50d9236a975ef704c0"> 139</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ad96bbee6d3d37b50d9236a975ef704c0">FileDefinedEngineView::setScreeningModel</a>(<span class="keyword">const</span> <a class="code hl_enumeration" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a> model) {</div>
|
||||
<div class="line"><a id="l00140" name="l00140"></a><span class="lineno"> 140</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.setScreeningModel(model);</div>
|
||||
<div class="line"><a id="l00141" name="l00141"></a><span class="lineno"> 141</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00142" name="l00142"></a><span class="lineno"> 142</span> </div>
|
||||
<div class="foldopen" id="foldopen00143" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00143" name="l00143"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#adbc50f397445f92b810d80cf329b8626"> 143</a></span> <a class="code hl_enumeration" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#adbc50f397445f92b810d80cf329b8626">FileDefinedEngineView::getScreeningModel</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00144" name="l00144"></a><span class="lineno"> 144</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.getScreeningModel();</div>
|
||||
<div class="line"><a id="l00145" name="l00145"></a><span class="lineno"> 145</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00146" name="l00146"></a><span class="lineno"> 146</span> </div>
|
||||
<div class="foldopen" id="foldopen00147" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00147" name="l00147"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a51ba09ff01fdcac1125d42f276c9a0a7"> 147</a></span> std::vector<size_t> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a51ba09ff01fdcac1125d42f276c9a0a7">FileDefinedEngineView::constructSpeciesIndexMap</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00148" name="l00148"></a><span class="lineno"> 148</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Constructing species index map for file defined engine view..."</span>);</div>
|
||||
<div class="line"><a id="l00149" name="l00149"></a><span class="lineno"> 149</span> std::unordered_map<Species, size_t> fullSpeciesReverseMap;</div>
|
||||
<div class="line"><a id="l00150" name="l00150"></a><span class="lineno"> 150</span> <span class="keyword">const</span> <span class="keyword">auto</span>& fullSpeciesList = <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.getNetworkSpecies();</div>
|
||||
<div class="line"><a id="l00151" name="l00151"></a><span class="lineno"> 151</span> </div>
|
||||
<div class="line"><a id="l00152" name="l00152"></a><span class="lineno"> 152</span> fullSpeciesReverseMap.reserve(fullSpeciesList.size());</div>
|
||||
<div class="line"><a id="l00153" name="l00153"></a><span class="lineno"> 153</span> </div>
|
||||
<div class="line"><a id="l00154" name="l00154"></a><span class="lineno"> 154</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i < fullSpeciesList.size(); ++i) {</div>
|
||||
<div class="line"><a id="l00155" name="l00155"></a><span class="lineno"> 155</span> fullSpeciesReverseMap[fullSpeciesList[i]] = i;</div>
|
||||
<div class="line"><a id="l00156" name="l00156"></a><span class="lineno"> 156</span> }</div>
|
||||
<div class="line"><a id="l00157" name="l00157"></a><span class="lineno"> 157</span> </div>
|
||||
<div class="line"><a id="l00158" name="l00158"></a><span class="lineno"> 158</span> std::vector<size_t> speciesIndexMap;</div>
|
||||
<div class="line"><a id="l00159" name="l00159"></a><span class="lineno"> 159</span> speciesIndexMap.reserve(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>.size());</div>
|
||||
<div class="line"><a id="l00160" name="l00160"></a><span class="lineno"> 160</span> </div>
|
||||
<div class="line"><a id="l00161" name="l00161"></a><span class="lineno"> 161</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& active_species : <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>) {</div>
|
||||
<div class="line"><a id="l00162" name="l00162"></a><span class="lineno"> 162</span> <span class="keyword">auto</span> it = fullSpeciesReverseMap.find(active_species);</div>
|
||||
<div class="line"><a id="l00163" name="l00163"></a><span class="lineno"> 163</span> <span class="keywordflow">if</span> (it != fullSpeciesReverseMap.end()) {</div>
|
||||
<div class="line"><a id="l00164" name="l00164"></a><span class="lineno"> 164</span> speciesIndexMap.push_back(it->second);</div>
|
||||
<div class="line"><a id="l00165" name="l00165"></a><span class="lineno"> 165</span> } <span class="keywordflow">else</span> {</div>
|
||||
<div class="line"><a id="l00166" name="l00166"></a><span class="lineno"> 166</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Species '{}' not found in full species map."</span>, active_species.name());</div>
|
||||
<div class="line"><a id="l00167" name="l00167"></a><span class="lineno"> 167</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a> -> flush_log();</div>
|
||||
<div class="line"><a id="l00168" name="l00168"></a><span class="lineno"> 168</span> <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Species not found in full species map: "</span> + std::string(active_species.name()));</div>
|
||||
<div class="line"><a id="l00169" name="l00169"></a><span class="lineno"> 169</span> }</div>
|
||||
<div class="line"><a id="l00170" name="l00170"></a><span class="lineno"> 170</span> }</div>
|
||||
<div class="line"><a id="l00171" name="l00171"></a><span class="lineno"> 171</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Species index map constructed with {} entries."</span>, speciesIndexMap.size());</div>
|
||||
<div class="line"><a id="l00172" name="l00172"></a><span class="lineno"> 172</span> <span class="keywordflow">return</span> speciesIndexMap;</div>
|
||||
<div class="line"><a id="l00173" name="l00173"></a><span class="lineno"> 173</span> </div>
|
||||
<div class="line"><a id="l00174" name="l00174"></a><span class="lineno"> 174</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00175" name="l00175"></a><span class="lineno"> 175</span> </div>
|
||||
<div class="foldopen" id="foldopen00176" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00176" name="l00176"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#aebb3f3548f8781506f31580706810a4e"> 176</a></span> std::vector<size_t> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#aebb3f3548f8781506f31580706810a4e">FileDefinedEngineView::constructReactionIndexMap</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00177" name="l00177"></a><span class="lineno"> 177</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Constructing reaction index map for file defined engine view..."</span>);</div>
|
||||
<div class="line"><a id="l00178" name="l00178"></a><span class="lineno"> 178</span> </div>
|
||||
<div class="line"><a id="l00179" name="l00179"></a><span class="lineno"> 179</span> <span class="comment">// --- Step 1: Create a reverse map using the reaction's unique ID as the key. ---</span></div>
|
||||
<div class="line"><a id="l00180" name="l00180"></a><span class="lineno"> 180</span> std::unordered_map<std::string_view, size_t> fullReactionReverseMap;</div>
|
||||
<div class="line"><a id="l00181" name="l00181"></a><span class="lineno"> 181</span> <span class="keyword">const</span> <span class="keyword">auto</span>& fullReactionSet = <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.getNetworkReactions();</div>
|
||||
<div class="line"><a id="l00182" name="l00182"></a><span class="lineno"> 182</span> fullReactionReverseMap.reserve(fullReactionSet.size());</div>
|
||||
<div class="line"><a id="l00183" name="l00183"></a><span class="lineno"> 183</span> </div>
|
||||
<div class="line"><a id="l00184" name="l00184"></a><span class="lineno"> 184</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i_full = 0; i_full < fullReactionSet.size(); ++i_full) {</div>
|
||||
<div class="line"><a id="l00185" name="l00185"></a><span class="lineno"> 185</span> fullReactionReverseMap[fullReactionSet[i_full].id()] = i_full;</div>
|
||||
<div class="line"><a id="l00186" name="l00186"></a><span class="lineno"> 186</span> }</div>
|
||||
<div class="line"><a id="l00187" name="l00187"></a><span class="lineno"> 187</span> </div>
|
||||
<div class="line"><a id="l00188" name="l00188"></a><span class="lineno"> 188</span> <span class="comment">// --- Step 2: Build the final index map using the active reaction set. ---</span></div>
|
||||
<div class="line"><a id="l00189" name="l00189"></a><span class="lineno"> 189</span> std::vector<size_t> reactionIndexMap;</div>
|
||||
<div class="line"><a id="l00190" name="l00190"></a><span class="lineno"> 190</span> reactionIndexMap.reserve(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a>.size());</div>
|
||||
<div class="line"><a id="l00191" name="l00191"></a><span class="lineno"> 191</span> </div>
|
||||
<div class="line"><a id="l00192" name="l00192"></a><span class="lineno"> 192</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& active_reaction_ptr : <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a>) {</div>
|
||||
<div class="line"><a id="l00193" name="l00193"></a><span class="lineno"> 193</span> <span class="keyword">auto</span> it = fullReactionReverseMap.find(active_reaction_ptr.id());</div>
|
||||
<div class="line"><a id="l00194" name="l00194"></a><span class="lineno"> 194</span> </div>
|
||||
<div class="line"><a id="l00195" name="l00195"></a><span class="lineno"> 195</span> <span class="keywordflow">if</span> (it != fullReactionReverseMap.end()) {</div>
|
||||
<div class="line"><a id="l00196" name="l00196"></a><span class="lineno"> 196</span> reactionIndexMap.push_back(it->second);</div>
|
||||
<div class="line"><a id="l00197" name="l00197"></a><span class="lineno"> 197</span> } <span class="keywordflow">else</span> {</div>
|
||||
<div class="line"><a id="l00198" name="l00198"></a><span class="lineno"> 198</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Active reaction '{}' not found in base engine during reaction index map construction."</span>, active_reaction_ptr.id());</div>
|
||||
<div class="line"><a id="l00199" name="l00199"></a><span class="lineno"> 199</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>->flush_log();</div>
|
||||
<div class="line"><a id="l00200" name="l00200"></a><span class="lineno"> 200</span> <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Mismatch between active reactions and base engine."</span>);</div>
|
||||
<div class="line"><a id="l00201" name="l00201"></a><span class="lineno"> 201</span> }</div>
|
||||
<div class="line"><a id="l00202" name="l00202"></a><span class="lineno"> 202</span> }</div>
|
||||
<div class="line"><a id="l00203" name="l00203"></a><span class="lineno"> 203</span> </div>
|
||||
<div class="line"><a id="l00204" name="l00204"></a><span class="lineno"> 204</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Reaction index map constructed with {} entries."</span>, reactionIndexMap.size());</div>
|
||||
<div class="line"><a id="l00205" name="l00205"></a><span class="lineno"> 205</span> <span class="keywordflow">return</span> reactionIndexMap;</div>
|
||||
<div class="line"><a id="l00206" name="l00206"></a><span class="lineno"> 206</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00207" name="l00207"></a><span class="lineno"> 207</span> </div>
|
||||
<div class="foldopen" id="foldopen00208" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00208" name="l00208"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a3b5162b7be35405285ef9f825ec2663b"> 208</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a3b5162b7be35405285ef9f825ec2663b">FileDefinedEngineView::buildFromFile</a>(<span class="keyword">const</span> std::string &fileName) {</div>
|
||||
<div class="line"><a id="l00209" name="l00209"></a><span class="lineno"> 209</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Building file defined engine view from {}..."</span>, fileName);</div>
|
||||
<div class="line"><a id="l00210" name="l00210"></a><span class="lineno"> 210</span> <span class="keyword">auto</span> [reactionPENames] = <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500">m_parser</a>.parse(fileName);</div>
|
||||
<div class="line"><a id="l00211" name="l00211"></a><span class="lineno"> 211</span> </div>
|
||||
<div class="line"><a id="l00212" name="l00212"></a><span class="lineno"> 212</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a>.clear();</div>
|
||||
<div class="line"><a id="l00213" name="l00213"></a><span class="lineno"> 213</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>.clear();</div>
|
||||
<div class="line"><a id="l00214" name="l00214"></a><span class="lineno"> 214</span> </div>
|
||||
<div class="line"><a id="l00215" name="l00215"></a><span class="lineno"> 215</span> std::unordered_set<Species> seenSpecies;</div>
|
||||
<div class="line"><a id="l00216" name="l00216"></a><span class="lineno"> 216</span> </div>
|
||||
<div class="line"><a id="l00217" name="l00217"></a><span class="lineno"> 217</span> <span class="keyword">const</span> <span class="keyword">auto</span>& fullNetworkReactionSet = <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.getNetworkReactions();</div>
|
||||
<div class="line"><a id="l00218" name="l00218"></a><span class="lineno"> 218</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& peName : reactionPENames) {</div>
|
||||
<div class="line"><a id="l00219" name="l00219"></a><span class="lineno"> 219</span> <span class="keywordflow">if</span> (!fullNetworkReactionSet.contains(peName)) {</div>
|
||||
<div class="line"><a id="l00220" name="l00220"></a><span class="lineno"> 220</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Reaction with name '{}' not found in the base engine's network reactions. Aborting..."</span>, peName);</div>
|
||||
<div class="line"><a id="l00221" name="l00221"></a><span class="lineno"> 221</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>->flush_log();</div>
|
||||
<div class="line"><a id="l00222" name="l00222"></a><span class="lineno"> 222</span> <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Reaction with name '"</span> + std::string(peName) + <span class="stringliteral">"' not found in the base engine's network reactions."</span>);</div>
|
||||
<div class="line"><a id="l00223" name="l00223"></a><span class="lineno"> 223</span> }</div>
|
||||
<div class="line"><a id="l00224" name="l00224"></a><span class="lineno"> 224</span> <span class="keyword">auto</span> <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a> = fullNetworkReactionSet[peName];</div>
|
||||
<div class="line"><a id="l00225" name="l00225"></a><span class="lineno"> 225</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& reactant : <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.reactants()) {</div>
|
||||
<div class="line"><a id="l00226" name="l00226"></a><span class="lineno"> 226</span> <span class="keywordflow">if</span> (!seenSpecies.contains(reactant)) {</div>
|
||||
<div class="line"><a id="l00227" name="l00227"></a><span class="lineno"> 227</span> seenSpecies.insert(reactant);</div>
|
||||
<div class="line"><a id="l00228" name="l00228"></a><span class="lineno"> 228</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>.push_back(reactant);</div>
|
||||
<div class="line"><a id="l00229" name="l00229"></a><span class="lineno"> 229</span> }</div>
|
||||
<div class="line"><a id="l00230" name="l00230"></a><span class="lineno"> 230</span> }</div>
|
||||
<div class="line"><a id="l00231" name="l00231"></a><span class="lineno"> 231</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& product : <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.products()) {</div>
|
||||
<div class="line"><a id="l00232" name="l00232"></a><span class="lineno"> 232</span> <span class="keywordflow">if</span> (!seenSpecies.contains(product)) {</div>
|
||||
<div class="line"><a id="l00233" name="l00233"></a><span class="lineno"> 233</span> seenSpecies.insert(product);</div>
|
||||
<div class="line"><a id="l00234" name="l00234"></a><span class="lineno"> 234</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>.push_back(product);</div>
|
||||
<div class="line"><a id="l00235" name="l00235"></a><span class="lineno"> 235</span> }</div>
|
||||
<div class="line"><a id="l00236" name="l00236"></a><span class="lineno"> 236</span> }</div>
|
||||
<div class="line"><a id="l00237" name="l00237"></a><span class="lineno"> 237</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a>.add_reaction(<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>);</div>
|
||||
<div class="line"><a id="l00238" name="l00238"></a><span class="lineno"> 238</span> }</div>
|
||||
<div class="line"><a id="l00239" name="l00239"></a><span class="lineno"> 239</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"File defined engine view built with {} active species and {} active reactions."</span>, <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>.size(), <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a>.size());</div>
|
||||
<div class="line"><a id="l00240" name="l00240"></a><span class="lineno"> 240</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Active species: {}"</span>, [<span class="keyword">this</span>]() -> std::string {</div>
|
||||
<div class="line"><a id="l00241" name="l00241"></a><span class="lineno"> 241</span> std::string result;</div>
|
||||
<div class="line"><a id="l00242" name="l00242"></a><span class="lineno"> 242</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& species : <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>) {</div>
|
||||
<div class="line"><a id="l00243" name="l00243"></a><span class="lineno"> 243</span> result += std::string(species.name()) + <span class="stringliteral">", "</span>;</div>
|
||||
<div class="line"><a id="l00244" name="l00244"></a><span class="lineno"> 244</span> }</div>
|
||||
<div class="line"><a id="l00245" name="l00245"></a><span class="lineno"> 245</span> <span class="keywordflow">if</span> (!result.empty()) {</div>
|
||||
<div class="line"><a id="l00246" name="l00246"></a><span class="lineno"> 246</span> result.pop_back(); <span class="comment">// Remove last space</span></div>
|
||||
<div class="line"><a id="l00247" name="l00247"></a><span class="lineno"> 247</span> result.pop_back(); <span class="comment">// Remove last comma</span></div>
|
||||
<div class="line"><a id="l00248" name="l00248"></a><span class="lineno"> 248</span> }</div>
|
||||
<div class="line"><a id="l00249" name="l00249"></a><span class="lineno"> 249</span> <span class="keywordflow">return</span> result;</div>
|
||||
<div class="line"><a id="l00250" name="l00250"></a><span class="lineno"> 250</span> }());</div>
|
||||
<div class="line"><a id="l00251" name="l00251"></a><span class="lineno"> 251</span> LOG_DEBUG(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Active reactions: {}"</span>, [<span class="keyword">this</span>]() -> std::string {</div>
|
||||
<div class="line"><a id="l00252" name="l00252"></a><span class="lineno"> 252</span> std::string result;</div>
|
||||
<div class="line"><a id="l00253" name="l00253"></a><span class="lineno"> 253</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a> : <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a>) {</div>
|
||||
<div class="line"><a id="l00254" name="l00254"></a><span class="lineno"> 254</span> result += std::string(<a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>.id()) + <span class="stringliteral">", "</span>;</div>
|
||||
<div class="line"><a id="l00255" name="l00255"></a><span class="lineno"> 255</span> }</div>
|
||||
<div class="line"><a id="l00256" name="l00256"></a><span class="lineno"> 256</span> <span class="keywordflow">if</span> (!result.empty()) {</div>
|
||||
<div class="line"><a id="l00257" name="l00257"></a><span class="lineno"> 257</span> result.pop_back(); <span class="comment">// Remove last space</span></div>
|
||||
<div class="line"><a id="l00258" name="l00258"></a><span class="lineno"> 258</span> result.pop_back(); <span class="comment">// Remove last comma</span></div>
|
||||
<div class="line"><a id="l00259" name="l00259"></a><span class="lineno"> 259</span> }</div>
|
||||
<div class="line"><a id="l00260" name="l00260"></a><span class="lineno"> 260</span> <span class="keywordflow">return</span> result;</div>
|
||||
<div class="line"><a id="l00261" name="l00261"></a><span class="lineno"> 261</span> }());</div>
|
||||
<div class="line"><a id="l00262" name="l00262"></a><span class="lineno"> 262</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">m_speciesIndexMap</a> = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a51ba09ff01fdcac1125d42f276c9a0a7">constructSpeciesIndexMap</a>();</div>
|
||||
<div class="line"><a id="l00263" name="l00263"></a><span class="lineno"> 263</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#af0a77a4749a15aae87bdecfccbd1736e">m_reactionIndexMap</a> = <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#aebb3f3548f8781506f31580706810a4e">constructReactionIndexMap</a>();</div>
|
||||
<div class="line"><a id="l00264" name="l00264"></a><span class="lineno"> 264</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a6e421bc748933be31bed9ff53f12b595">m_isStale</a> = <span class="keyword">false</span>;</div>
|
||||
<div class="line"><a id="l00265" name="l00265"></a><span class="lineno"> 265</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00266" name="l00266"></a><span class="lineno"> 266</span> </div>
|
||||
<div class="foldopen" id="foldopen00267" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00267" name="l00267"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#ac231044e37e0962f664f8465e1ccb022"> 267</a></span> std::vector<double> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ac231044e37e0962f664f8465e1ccb022">FileDefinedEngineView::mapViewToFull</a>(<span class="keyword">const</span> std::vector<double>& culled)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00268" name="l00268"></a><span class="lineno"> 268</span> std::vector<double> full(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>.getNetworkSpecies().size(), 0.0);</div>
|
||||
<div class="line"><a id="l00269" name="l00269"></a><span class="lineno"> 269</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i_culled = 0; i_culled < culled.size(); ++i_culled) {</div>
|
||||
<div class="line"><a id="l00270" name="l00270"></a><span class="lineno"> 270</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> i_full = <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">m_speciesIndexMap</a>[i_culled];</div>
|
||||
<div class="line"><a id="l00271" name="l00271"></a><span class="lineno"> 271</span> full[i_full] += culled[i_culled];</div>
|
||||
<div class="line"><a id="l00272" name="l00272"></a><span class="lineno"> 272</span> }</div>
|
||||
<div class="line"><a id="l00273" name="l00273"></a><span class="lineno"> 273</span> <span class="keywordflow">return</span> full;</div>
|
||||
<div class="line"><a id="l00274" name="l00274"></a><span class="lineno"> 274</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00275" name="l00275"></a><span class="lineno"> 275</span> </div>
|
||||
<div class="foldopen" id="foldopen00276" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00276" name="l00276"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a97e5ee4651dbe6754678fe96e4702fee"> 276</a></span> std::vector<double> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a97e5ee4651dbe6754678fe96e4702fee">FileDefinedEngineView::mapFullToView</a>(<span class="keyword">const</span> std::vector<double>& full)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00277" name="l00277"></a><span class="lineno"> 277</span> std::vector<double> culled(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>.size(), 0.0);</div>
|
||||
<div class="line"><a id="l00278" name="l00278"></a><span class="lineno"> 278</span> <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i_culled = 0; i_culled < <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>.size(); ++i_culled) {</div>
|
||||
<div class="line"><a id="l00279" name="l00279"></a><span class="lineno"> 279</span> <span class="keyword">const</span> <span class="keywordtype">size_t</span> i_full = <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">m_speciesIndexMap</a>[i_culled];</div>
|
||||
<div class="line"><a id="l00280" name="l00280"></a><span class="lineno"> 280</span> culled[i_culled] = full[i_full];</div>
|
||||
<div class="line"><a id="l00281" name="l00281"></a><span class="lineno"> 281</span> }</div>
|
||||
<div class="line"><a id="l00282" name="l00282"></a><span class="lineno"> 282</span> <span class="keywordflow">return</span> culled;</div>
|
||||
<div class="line"><a id="l00283" name="l00283"></a><span class="lineno"> 283</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00284" name="l00284"></a><span class="lineno"> 284</span> </div>
|
||||
<div class="foldopen" id="foldopen00285" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00285" name="l00285"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a8d2c6b9a33b9c8c172bbd2c2e2e9ffaf"> 285</a></span> <span class="keywordtype">size_t</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a8d2c6b9a33b9c8c172bbd2c2e2e9ffaf">FileDefinedEngineView::mapViewToFullSpeciesIndex</a>(<span class="keywordtype">size_t</span> culledSpeciesIndex)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00286" name="l00286"></a><span class="lineno"> 286</span> <span class="keywordflow">if</span> (culledSpeciesIndex < 0 || culledSpeciesIndex >= <span class="keyword">static_cast<</span><span class="keywordtype">int</span><span class="keyword">></span>(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">m_speciesIndexMap</a>.size())) {</div>
|
||||
<div class="line"><a id="l00287" name="l00287"></a><span class="lineno"> 287</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Defined index {} is out of bounds for species index map of size {}."</span>, culledSpeciesIndex, <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">m_speciesIndexMap</a>.size());</div>
|
||||
<div class="line"><a id="l00288" name="l00288"></a><span class="lineno"> 288</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>->flush_log();</div>
|
||||
<div class="line"><a id="l00289" name="l00289"></a><span class="lineno"> 289</span> <span class="keywordflow">throw</span> std::out_of_range(<span class="stringliteral">"Defined index "</span> + std::to_string(culledSpeciesIndex) + <span class="stringliteral">" is out of bounds for species index map of size "</span> + std::to_string(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">m_speciesIndexMap</a>.size()) + <span class="stringliteral">"."</span>);</div>
|
||||
<div class="line"><a id="l00290" name="l00290"></a><span class="lineno"> 290</span> }</div>
|
||||
<div class="line"><a id="l00291" name="l00291"></a><span class="lineno"> 291</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">m_speciesIndexMap</a>[culledSpeciesIndex];</div>
|
||||
<div class="line"><a id="l00292" name="l00292"></a><span class="lineno"> 292</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00293" name="l00293"></a><span class="lineno"> 293</span> </div>
|
||||
<div class="foldopen" id="foldopen00294" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00294" name="l00294"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#ae7d6f0ff9076d59d1245c047bbd1bdb9"> 294</a></span> <span class="keywordtype">size_t</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae7d6f0ff9076d59d1245c047bbd1bdb9">FileDefinedEngineView::mapViewToFullReactionIndex</a>(<span class="keywordtype">size_t</span> culledReactionIndex)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00295" name="l00295"></a><span class="lineno"> 295</span> <span class="keywordflow">if</span> (culledReactionIndex < 0 || culledReactionIndex >= <span class="keyword">static_cast<</span><span class="keywordtype">int</span><span class="keyword">></span>(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#af0a77a4749a15aae87bdecfccbd1736e">m_reactionIndexMap</a>.size())) {</div>
|
||||
<div class="line"><a id="l00296" name="l00296"></a><span class="lineno"> 296</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"Defined index {} is out of bounds for reaction index map of size {}."</span>, culledReactionIndex, <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#af0a77a4749a15aae87bdecfccbd1736e">m_reactionIndexMap</a>.size());</div>
|
||||
<div class="line"><a id="l00297" name="l00297"></a><span class="lineno"> 297</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>->flush_log();</div>
|
||||
<div class="line"><a id="l00298" name="l00298"></a><span class="lineno"> 298</span> <span class="keywordflow">throw</span> std::out_of_range(<span class="stringliteral">"Defined index "</span> + std::to_string(culledReactionIndex) + <span class="stringliteral">" is out of bounds for reaction index map of size "</span> + std::to_string(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#af0a77a4749a15aae87bdecfccbd1736e">m_reactionIndexMap</a>.size()) + <span class="stringliteral">"."</span>);</div>
|
||||
<div class="line"><a id="l00299" name="l00299"></a><span class="lineno"> 299</span> }</div>
|
||||
<div class="line"><a id="l00300" name="l00300"></a><span class="lineno"> 300</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#af0a77a4749a15aae87bdecfccbd1736e">m_reactionIndexMap</a>[culledReactionIndex];</div>
|
||||
<div class="line"><a id="l00301" name="l00301"></a><span class="lineno"> 301</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00302" name="l00302"></a><span class="lineno"> 302</span> </div>
|
||||
<div class="foldopen" id="foldopen00303" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00303" name="l00303"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f"> 303</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">FileDefinedEngineView::validateNetworkState</a>()<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00304" name="l00304"></a><span class="lineno"> 304</span> <span class="keywordflow">if</span> (<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a6e421bc748933be31bed9ff53f12b595">m_isStale</a>) {</div>
|
||||
<div class="line"><a id="l00305" name="l00305"></a><span class="lineno"> 305</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>, <span class="stringliteral">"File defined engine view is stale. Please call update() with a valid NetIn object."</span>);</div>
|
||||
<div class="line"><a id="l00306" name="l00306"></a><span class="lineno"> 306</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a>->flush_log();</div>
|
||||
<div class="line"><a id="l00307" name="l00307"></a><span class="lineno"> 307</span> <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"File defined engine view is stale. Please call update() with a valid NetIn object."</span>);</div>
|
||||
<div class="line"><a id="l00308" name="l00308"></a><span class="lineno"> 308</span> }</div>
|
||||
<div class="line"><a id="l00309" name="l00309"></a><span class="lineno"> 309</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00310" name="l00310"></a><span class="lineno"> 310</span>}</div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00121">engine_abstract.h:121</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a0a9b07176cb93b54c677b6ce71fda500"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500">gridfire::FileDefinedEngineView::m_parser</a></div><div class="ttdeci">const io::NetworkFileParser & m_parser</div><div class="ttdoc">Parser for the network file.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00078">engine_defined.h:78</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a0ef8804780d13bbfce0856237bb00470"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a0ef8804780d13bbfce0856237bb00470">gridfire::FileDefinedEngineView::getJacobianMatrixEntry</a></div><div class="ttdeci">double getJacobianMatrixEntry(const int i_defined, const int j_defined) const override</div><div class="ttdoc">Get an entry from the previously generated Jacobian matrix.</div><div class="ttdef"><b>Definition</b> <a href="#l00056">engine_defined.cpp:56</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a1b343998b93955025a589b2b4541e33b"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b">gridfire::FileDefinedEngineView::m_fileName</a></div><div class="ttdeci">std::string m_fileName</div><div class="ttdoc">Name of the file defining the reaction set considered by the engine view.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00077">engine_defined.h:77</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a27a5163157cc15c4cb3b99a5d3564dbd"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a27a5163157cc15c4cb3b99a5d3564dbd">gridfire::FileDefinedEngineView::generateStoichiometryMatrix</a></div><div class="ttdeci">void generateStoichiometryMatrix() override</div><div class="ttdoc">Generate the stoichiometry matrix for the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00068">engine_defined.cpp:68</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a299a0c61aa4f26029c770013c9feff5e"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">gridfire::FileDefinedEngineView::m_activeSpecies</a></div><div class="ttdeci">std::vector< fourdst::atomic::Species > m_activeSpecies</div><div class="ttdoc">Active species in the defined engine.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00080">engine_defined.h:80</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a2c1d88b06568f9ea4c65e794d012ebfb"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a2c1d88b06568f9ea4c65e794d012ebfb">gridfire::FileDefinedEngineView::calculateRHSAndEnergy</a></div><div class="ttdeci">StepDerivatives< double > calculateRHSAndEnergy(const std::vector< double > &Y_defined, const double T9, const double rho) const override</div><div class="ttdoc">Calculate the right-hand side (dY/dt) and energy generation.</div><div class="ttdef"><b>Definition</b> <a href="#l00029">engine_defined.cpp:29</a></div></div>
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||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a3b5162b7be35405285ef9f825ec2663b"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a3b5162b7be35405285ef9f825ec2663b">gridfire::FileDefinedEngineView::buildFromFile</a></div><div class="ttdeci">void buildFromFile(const std::string &fileName)</div><div class="ttdef"><b>Definition</b> <a href="#l00208">engine_defined.cpp:208</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a48b2451f96b8f5511ffc4071519c0810"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a48b2451f96b8f5511ffc4071519c0810">gridfire::FileDefinedEngineView::generateJacobianMatrix</a></div><div class="ttdeci">void generateJacobianMatrix(const std::vector< double > &Y_defined, const double T9, const double rho) override</div><div class="ttdoc">Generate the Jacobian matrix for the current state.</div><div class="ttdef"><b>Definition</b> <a href="#l00045">engine_defined.cpp:45</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a4c8b273c5cb3d470567c5691b68493a3"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a4c8b273c5cb3d470567c5691b68493a3">gridfire::FileDefinedEngineView::getBaseEngine</a></div><div class="ttdeci">const DynamicEngine & getBaseEngine() const override</div><div class="ttdoc">Access the underlying engine instance.</div><div class="ttdef"><b>Definition</b> <a href="#l00021">engine_defined.cpp:21</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a51ba09ff01fdcac1125d42f276c9a0a7"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a51ba09ff01fdcac1125d42f276c9a0a7">gridfire::FileDefinedEngineView::constructSpeciesIndexMap</a></div><div class="ttdeci">std::vector< size_t > constructSpeciesIndexMap() const</div><div class="ttdoc">Constructs the species index map.</div><div class="ttdef"><b>Definition</b> <a href="#l00147">engine_defined.cpp:147</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a5bbea17b69cc8f81bc251a04f4435a0c"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a5bbea17b69cc8f81bc251a04f4435a0c">gridfire::FileDefinedEngineView::getNetworkReactions</a></div><div class="ttdeci">const reaction::LogicalReactionSet & getNetworkReactions() const override</div><div class="ttdoc">Get the set of logical reactions in the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00102">engine_defined.cpp:102</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a6e421bc748933be31bed9ff53f12b595"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a6e421bc748933be31bed9ff53f12b595">gridfire::FileDefinedEngineView::m_isStale</a></div><div class="ttdeci">bool m_isStale</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00086">engine_defined.h:86</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a8bb583e039b49608272997ed2d3387fa"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a8bb583e039b49608272997ed2d3387fa">gridfire::FileDefinedEngineView::getNetworkSpecies</a></div><div class="ttdeci">const std::vector< fourdst::atomic::Species > & getNetworkSpecies() const override</div><div class="ttdoc">Get the list of species in the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00025">engine_defined.cpp:25</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a8d2c6b9a33b9c8c172bbd2c2e2e9ffaf"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a8d2c6b9a33b9c8c172bbd2c2e2e9ffaf">gridfire::FileDefinedEngineView::mapViewToFullSpeciesIndex</a></div><div class="ttdeci">size_t mapViewToFullSpeciesIndex(size_t culledSpeciesIndex) const</div><div class="ttdoc">Maps a culled species index to a full species index.</div><div class="ttdef"><b>Definition</b> <a href="#l00285">engine_defined.cpp:285</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a8f2f64bab0f516ed2a6fd529912e0acd"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd">gridfire::FileDefinedEngineView::FileDefinedEngineView</a></div><div class="ttdeci">FileDefinedEngineView(DynamicEngine &baseEngine, const std::string &fileName, const io::NetworkFileParser &parser)</div><div class="ttdef"><b>Definition</b> <a href="#l00008">engine_defined.cpp:8</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a92f14da849e99d07c1ff1347addb9263"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a92f14da849e99d07c1ff1347addb9263">gridfire::FileDefinedEngineView::setNetworkFile</a></div><div class="ttdeci">void setNetworkFile(const std::string &fileName)</div><div class="ttdef"><b>Definition</b> <a href="#l00133">engine_defined.cpp:133</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a97e5ee4651dbe6754678fe96e4702fee"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a97e5ee4651dbe6754678fe96e4702fee">gridfire::FileDefinedEngineView::mapFullToView</a></div><div class="ttdeci">std::vector< double > mapFullToView(const std::vector< double > &full) const</div><div class="ttdoc">Maps a vector of full abundances to a vector of culled abundances.</div><div class="ttdef"><b>Definition</b> <a href="#l00276">engine_defined.cpp:276</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a9d93633ed4ab68de94b7274f879a0432"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">gridfire::FileDefinedEngineView::m_logger</a></div><div class="ttdeci">quill::Logger * m_logger</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00074">engine_defined.h:74</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a9da9224f5c99a5068f3d8cbf066e4693"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a9da9224f5c99a5068f3d8cbf066e4693">gridfire::FileDefinedEngineView::getStoichiometryMatrixEntry</a></div><div class="ttdeci">int getStoichiometryMatrixEntry(const int speciesIndex_defined, const int reactionIndex_defined) const override</div><div class="ttdoc">Get an entry from the stoichiometry matrix.</div><div class="ttdef"><b>Definition</b> <a href="#l00074">engine_defined.cpp:74</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ac231044e37e0962f664f8465e1ccb022"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ac231044e37e0962f664f8465e1ccb022">gridfire::FileDefinedEngineView::mapViewToFull</a></div><div class="ttdeci">std::vector< double > mapViewToFull(const std::vector< double > &culled) const</div><div class="ttdoc">Maps a vector of culled abundances to a vector of full abundances.</div><div class="ttdef"><b>Definition</b> <a href="#l00267">engine_defined.cpp:267</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ac371fb66fd0a76a04df204c9dd9a05ef"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ac371fb66fd0a76a04df204c9dd9a05ef">gridfire::FileDefinedEngineView::calculateMolarReactionFlow</a></div><div class="ttdeci">double calculateMolarReactionFlow(const reaction::Reaction &reaction, const std::vector< double > &Y_defined, const double T9, const double rho) const override</div><div class="ttdoc">Calculate the molar reaction flow for a given reaction.</div><div class="ttdef"><b>Definition</b> <a href="#l00085">engine_defined.cpp:85</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ace3568eadaba69e7357b4386c5ca3eb0"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ace3568eadaba69e7357b4386c5ca3eb0">gridfire::FileDefinedEngineView::update</a></div><div class="ttdeci">void update(const NetIn &netIn) override</div><div class="ttdef"><b>Definition</b> <a href="#l00127">engine_defined.cpp:127</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ace3c6ea4841318c08695973ab3dcddc6"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ace3c6ea4841318c08695973ab3dcddc6">gridfire::FileDefinedEngineView::getSpeciesTimescales</a></div><div class="ttdeci">std::unordered_map< fourdst::atomic::Species, double > getSpeciesTimescales(const std::vector< double > &Y_defined, const double T9, const double rho) const override</div><div class="ttdoc">Compute timescales for all species in the network.</div><div class="ttdef"><b>Definition</b> <a href="#l00108">engine_defined.cpp:108</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ad8454c98fa9a4bb45dc81059bc51fc81"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">gridfire::FileDefinedEngineView::m_baseEngine</a></div><div class="ttdeci">DynamicEngine & m_baseEngine</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00076">engine_defined.h:76</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ad96bbee6d3d37b50d9236a975ef704c0"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ad96bbee6d3d37b50d9236a975ef704c0">gridfire::FileDefinedEngineView::setScreeningModel</a></div><div class="ttdeci">void setScreeningModel(screening::ScreeningType model) override</div><div class="ttdef"><b>Definition</b> <a href="#l00139">engine_defined.cpp:139</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_adbc50f397445f92b810d80cf329b8626"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#adbc50f397445f92b810d80cf329b8626">gridfire::FileDefinedEngineView::getScreeningModel</a></div><div class="ttdeci">screening::ScreeningType getScreeningModel() const override</div><div class="ttdef"><b>Definition</b> <a href="#l00143">engine_defined.cpp:143</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ae012da2b1f6169cb13e6075a73353ab2"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">gridfire::FileDefinedEngineView::m_activeReactions</a></div><div class="ttdeci">reaction::LogicalReactionSet m_activeReactions</div><div class="ttdoc">Active reactions in the defined engine.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00081">engine_defined.h:81</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ae3f99002ab2c56a5bcdec00839f8628f"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">gridfire::FileDefinedEngineView::validateNetworkState</a></div><div class="ttdeci">void validateNetworkState() const</div><div class="ttdef"><b>Definition</b> <a href="#l00303">engine_defined.cpp:303</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ae7d6f0ff9076d59d1245c047bbd1bdb9"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ae7d6f0ff9076d59d1245c047bbd1bdb9">gridfire::FileDefinedEngineView::mapViewToFullReactionIndex</a></div><div class="ttdeci">size_t mapViewToFullReactionIndex(size_t culledReactionIndex) const</div><div class="ttdoc">Maps a culled reaction index to a full reaction index.</div><div class="ttdef"><b>Definition</b> <a href="#l00294">engine_defined.cpp:294</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_aebb3f3548f8781506f31580706810a4e"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#aebb3f3548f8781506f31580706810a4e">gridfire::FileDefinedEngineView::constructReactionIndexMap</a></div><div class="ttdeci">std::vector< size_t > constructReactionIndexMap() const</div><div class="ttdoc">Constructs the reaction index map.</div><div class="ttdef"><b>Definition</b> <a href="#l00176">engine_defined.cpp:176</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_aebd4a1a584f2784f1df3d503645be03b"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">gridfire::FileDefinedEngineView::m_speciesIndexMap</a></div><div class="ttdeci">std::vector< size_t > m_speciesIndexMap</div><div class="ttdoc">Maps indices of active species to indices in the full network.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00083">engine_defined.h:83</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_af0a77a4749a15aae87bdecfccbd1736e"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#af0a77a4749a15aae87bdecfccbd1736e">gridfire::FileDefinedEngineView::m_reactionIndexMap</a></div><div class="ttdeci">std::vector< size_t > m_reactionIndexMap</div><div class="ttdoc">Maps indices of active reactions to indices in the full network.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8h_source.html#l00084">engine_defined.h:84</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1io_1_1_network_file_parser_html"><div class="ttname"><a href="classgridfire_1_1io_1_1_network_file_parser.html">gridfire::io::NetworkFileParser</a></div><div class="ttdef"><b>Definition</b> <a href="network__file_8h_source.html#l00017">network_file.h:17</a></div></div>
|
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<div class="ttc" id="aclassgridfire_1_1reaction_1_1_reaction_html"><div class="ttname"><a href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></div><div class="ttdoc">Represents a single nuclear reaction from a specific data source.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00072">reaction.h:72</a></div></div>
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<div class="ttc" id="aengine__defined_8h_html"><div class="ttname"><a href="engine__defined_8h.html">engine_defined.h</a></div></div>
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<div class="ttc" id="anamespacegridfire_1_1reaction_html"><div class="ttname"><a href="namespacegridfire_1_1reaction.html">gridfire::reaction</a></div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00025">reaction.h:25</a></div></div>
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<div class="ttc" id="anamespacegridfire_1_1reaction_html_aa86f08712565f278adacc7cd2361eb31"><div class="ttname"><a href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a></div><div class="ttdeci">TemplatedReactionSet< LogicalReaction > LogicalReactionSet</div><div class="ttdoc">A set of logical reactions.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00557">reaction.h:557</a></div></div>
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<div class="ttc" id="anamespacegridfire_1_1screening_html_aa82aafbc4f8c28d0a75b60798e3a7d25"><div class="ttname"><a href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">gridfire::screening::ScreeningType</a></div><div class="ttdeci">ScreeningType</div><div class="ttdef"><b>Definition</b> <a href="screening__types_8h_source.html#l00008">screening_types.h:8</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_html"><div class="ttname"><a href="namespacegridfire.html">gridfire</a></div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00024">engine_abstract.h:24</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00053">network.h:53</a></div></div>
|
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<div class="ttc" id="astructgridfire_1_1_step_derivatives_html"><div class="ttname"><a href="structgridfire_1_1_step_derivatives.html">gridfire::StepDerivatives</a></div><div class="ttdoc">Structure holding derivatives and energy generation for a network step.</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00053">engine_abstract.h:53</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_step_derivatives_html_ab4aeb41be952c7b5844e1ee81fef9008"><div class="ttname"><a href="structgridfire_1_1_step_derivatives.html#ab4aeb41be952c7b5844e1ee81fef9008">gridfire::StepDerivatives::nuclearEnergyGenerationRate</a></div><div class="ttdeci">T nuclearEnergyGenerationRate</div><div class="ttdoc">Specific energy generation rate (e.g., erg/g/s).</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00055">engine_abstract.h:55</a></div></div>
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<div class="ttc" id="astructgridfire_1_1_step_derivatives_html_ae0de268b86c2404379409c4feae0b34d"><div class="ttname"><a href="structgridfire_1_1_step_derivatives.html#ae0de268b86c2404379409c4feae0b34d">gridfire::StepDerivatives::dydt</a></div><div class="ttdeci">std::vector< T > dydt</div><div class="ttdoc">Derivatives of abundances (dY/dt for each species).</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00054">engine_abstract.h:54</a></div></div>
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<div class="textblock"><code>#include "<a class="el" href="engine__view__abstract_8h_source.html">gridfire/engine/views/engine_view_abstract.h</a>"</code><br />
|
||||
<code>#include "<a class="el" href="engine__abstract_8h_source.html">gridfire/engine/engine_abstract.h</a>"</code><br />
|
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<code>#include "<a class="el" href="network__file_8h_source.html">gridfire/io/network_file.h</a>"</code><br />
|
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<code>#include "<a class="el" href="network_8h_source.html">gridfire/network.h</a>"</code><br />
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1_file_defined_engine_view.html">gridfire::FileDefinedEngineView</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">namespace  </td><td class="memItemRight" valign="bottom"><a class="el" href="namespacegridfire.html">gridfire</a></td></tr>
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4
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|
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|
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<div class="headertitle"><div class="title">engine_defined.h</div></div>
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|
||||
<a href="engine__defined_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="preprocessor">#pragma once</span></div>
|
||||
<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span> </div>
|
||||
<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="preprocessor">#include "<a class="code" href="engine__view__abstract_8h.html">gridfire/engine/views/engine_view_abstract.h</a>"</span></div>
|
||||
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="preprocessor">#include "<a class="code" href="engine__abstract_8h.html">gridfire/engine/engine_abstract.h</a>"</span></div>
|
||||
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="preprocessor">#include "<a class="code" href="network__file_8h.html">gridfire/io/network_file.h</a>"</span></div>
|
||||
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="preprocessor">#include "<a class="code" href="network_8h.html">gridfire/network.h</a>"</span></div>
|
||||
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span> </div>
|
||||
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span><span class="preprocessor">#include "fourdst/config/config.h"</span></div>
|
||||
<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span><span class="preprocessor">#include "fourdst/logging/logging.h"</span></div>
|
||||
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span> </div>
|
||||
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span><span class="preprocessor">#include "quill/Logger.h"</span></div>
|
||||
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span> </div>
|
||||
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span><span class="preprocessor">#include <string></span></div>
|
||||
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span> </div>
|
||||
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacegridfire.html">gridfire</a>{</div>
|
||||
<div class="foldopen" id="foldopen00016" data-start="{" data-end="};">
|
||||
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html"> 16</a></span> <span class="keyword">class </span><a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd">FileDefinedEngineView</a> final: <span class="keyword">public</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>, <span class="keyword">public</span> <a class="code hl_class" href="classgridfire_1_1_engine_view.html">EngineView</a><DynamicEngine> {</div>
|
||||
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span> <span class="keyword">public</span>:</div>
|
||||
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span> <span class="keyword">explicit</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd">FileDefinedEngineView</a>(</div>
|
||||
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& baseEngine,</div>
|
||||
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span> <span class="keyword">const</span> std::string& fileName,</div>
|
||||
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1io_1_1_network_file_parser.html">io::NetworkFileParser</a>& parser</div>
|
||||
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span> );</div>
|
||||
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> </div>
|
||||
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// --- EngineView Interface ---</span></div>
|
||||
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a4c8b273c5cb3d470567c5691b68493a3">getBaseEngine</a>() <span class="keyword">const override</span>;</div>
|
||||
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span> </div>
|
||||
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// --- Engine Interface ---</span></div>
|
||||
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> <span class="keyword">const</span> std::vector<fourdst::atomic::Species>& <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a8bb583e039b49608272997ed2d3387fa">getNetworkSpecies</a>() <span class="keyword">const override</span>;</div>
|
||||
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span> </div>
|
||||
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --- DynamicEngine Interface ---</span></div>
|
||||
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span> <a class="code hl_struct" href="structgridfire_1_1_step_derivatives.html">StepDerivatives<double></a> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a2c1d88b06568f9ea4c65e794d012ebfb">calculateRHSAndEnergy</a>(</div>
|
||||
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span> <span class="keyword">const</span> std::vector<double>& Y_defined,</div>
|
||||
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span> ) <span class="keyword">const override</span>;</div>
|
||||
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a48b2451f96b8f5511ffc4071519c0810">generateJacobianMatrix</a>(</div>
|
||||
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> <span class="keyword">const</span> std::vector<double>& Y_defined,</div>
|
||||
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> ) <span class="keyword">override</span>;</div>
|
||||
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span> <span class="keywordtype">double</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a0ef8804780d13bbfce0856237bb00470">getJacobianMatrixEntry</a>(</div>
|
||||
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> <span class="keyword">const</span> <span class="keywordtype">int</span> i_defined,</div>
|
||||
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> <span class="keyword">const</span> <span class="keywordtype">int</span> j_defined</div>
|
||||
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> ) <span class="keyword">const override</span>;</div>
|
||||
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a27a5163157cc15c4cb3b99a5d3564dbd">generateStoichiometryMatrix</a>() <span class="keyword">override</span>;</div>
|
||||
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span> <span class="keywordtype">int</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a9da9224f5c99a5068f3d8cbf066e4693">getStoichiometryMatrixEntry</a>(</div>
|
||||
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span> <span class="keyword">const</span> <span class="keywordtype">int</span> speciesIndex_defined,</div>
|
||||
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> <span class="keyword">const</span> <span class="keywordtype">int</span> reactionIndex_defined</div>
|
||||
<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> ) <span class="keyword">const override</span>;</div>
|
||||
<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span> <span class="keywordtype">double</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ac371fb66fd0a76a04df204c9dd9a05ef">calculateMolarReactionFlow</a>(</div>
|
||||
<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1reaction_1_1_reaction.html">reaction::Reaction</a>& <a class="code hl_namespace" href="namespacegridfire_1_1reaction.html">reaction</a>,</div>
|
||||
<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span> <span class="keyword">const</span> std::vector<double>& Y_defined,</div>
|
||||
<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span> ) <span class="keyword">const override</span>;</div>
|
||||
<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span> <span class="keyword">const</span> <a class="code hl_typedef" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a>& <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a5bbea17b69cc8f81bc251a04f4435a0c">getNetworkReactions</a>() <span class="keyword">const override</span>;</div>
|
||||
<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"> 57</span> std::unordered_map<fourdst::atomic::Species, double> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ace3c6ea4841318c08695973ab3dcddc6">getSpeciesTimescales</a>(</div>
|
||||
<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span> <span class="keyword">const</span> std::vector<double>& Y_defined,</div>
|
||||
<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00061" name="l00061"></a><span class="lineno"> 61</span> ) <span class="keyword">const override</span>;</div>
|
||||
<div class="line"><a id="l00062" name="l00062"></a><span class="lineno"> 62</span> </div>
|
||||
<div class="line"><a id="l00063" name="l00063"></a><span class="lineno"> 63</span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ace3568eadaba69e7357b4386c5ca3eb0">update</a>(<span class="keyword">const</span> <a class="code hl_struct" href="structgridfire_1_1_net_in.html">NetIn</a> &netIn) <span class="keyword">override</span>;</div>
|
||||
<div class="line"><a id="l00064" name="l00064"></a><span class="lineno"> 64</span> </div>
|
||||
<div class="line"><a id="l00065" name="l00065"></a><span class="lineno"> 65</span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a92f14da849e99d07c1ff1347addb9263">setNetworkFile</a>(<span class="keyword">const</span> std::string& fileName);</div>
|
||||
<div class="line"><a id="l00066" name="l00066"></a><span class="lineno"> 66</span> </div>
|
||||
<div class="line"><a id="l00067" name="l00067"></a><span class="lineno"> 67</span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ad96bbee6d3d37b50d9236a975ef704c0">setScreeningModel</a>(<a class="code hl_enumeration" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a> model) <span class="keyword">override</span>;</div>
|
||||
<div class="line"><a id="l00068" name="l00068"></a><span class="lineno"> 68</span> </div>
|
||||
<div class="line"><a id="l00069" name="l00069"></a><span class="lineno"> 69</span> [[nodiscard]] <a class="code hl_enumeration" href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">screening::ScreeningType</a> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#adbc50f397445f92b810d80cf329b8626">getScreeningModel</a>() <span class="keyword">const override</span>;</div>
|
||||
<div class="line"><a id="l00070" name="l00070"></a><span class="lineno"> 70</span> <span class="keyword">private</span>:</div>
|
||||
<div class="line"><a id="l00071" name="l00071"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187"> 71</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187">Config</a> = fourdst::config::Config;</div>
|
||||
<div class="line"><a id="l00072" name="l00072"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08"> 72</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08">LogManager</a> = fourdst::logging::LogManager;</div>
|
||||
<div class="line"><a id="l00073" name="l00073"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362"> 73</a></span> <a class="code hl_typedef" href="classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187">Config</a>& <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362">m_config</a> = Config::getInstance();</div>
|
||||
<div class="line"><a id="l00074" name="l00074"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432"> 74</a></span> quill::Logger* <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">m_logger</a> = LogManager::getInstance().getLogger(<span class="stringliteral">"log"</span>);</div>
|
||||
<div class="line"><a id="l00075" name="l00075"></a><span class="lineno"> 75</span> </div>
|
||||
<div class="line"><a id="l00076" name="l00076"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81"> 76</a></span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">m_baseEngine</a>;</div>
|
||||
<div class="line"><a id="l00077" name="l00077"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b"> 77</a></span> std::string <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b">m_fileName</a>; </div>
|
||||
<div class="line"><a id="l00078" name="l00078"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500"> 78</a></span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1io_1_1_network_file_parser.html">io::NetworkFileParser</a>& <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500">m_parser</a>; </div>
|
||||
<div class="line"><a id="l00079" name="l00079"></a><span class="lineno"> 79</span> </div>
|
||||
<div class="line"><a id="l00080" name="l00080"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e"> 80</a></span> std::vector<fourdst::atomic::Species> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">m_activeSpecies</a>; </div>
|
||||
<div class="line"><a id="l00081" name="l00081"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2"> 81</a></span> <a class="code hl_typedef" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">m_activeReactions</a>; </div>
|
||||
<div class="line"><a id="l00082" name="l00082"></a><span class="lineno"> 82</span> </div>
|
||||
<div class="line"><a id="l00083" name="l00083"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b"> 83</a></span> std::vector<size_t> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">m_speciesIndexMap</a>; </div>
|
||||
<div class="line"><a id="l00084" name="l00084"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#af0a77a4749a15aae87bdecfccbd1736e"> 84</a></span> std::vector<size_t> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#af0a77a4749a15aae87bdecfccbd1736e">m_reactionIndexMap</a>; </div>
|
||||
<div class="line"><a id="l00085" name="l00085"></a><span class="lineno"> 85</span> </div>
|
||||
<div class="line"><a id="l00086" name="l00086"></a><span class="lineno"><a class="line" href="classgridfire_1_1_file_defined_engine_view.html#a6e421bc748933be31bed9ff53f12b595"> 86</a></span> <span class="keywordtype">bool</span> <a class="code hl_variable" href="classgridfire_1_1_file_defined_engine_view.html#a6e421bc748933be31bed9ff53f12b595">m_isStale</a> = <span class="keyword">true</span>;</div>
|
||||
<div class="line"><a id="l00087" name="l00087"></a><span class="lineno"> 87</span> </div>
|
||||
<div class="line"><a id="l00088" name="l00088"></a><span class="lineno"> 88</span> <span class="keyword">private</span>:</div>
|
||||
<div class="line"><a id="l00089" name="l00089"></a><span class="lineno"> 89</span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a3b5162b7be35405285ef9f825ec2663b">buildFromFile</a>(<span class="keyword">const</span> std::string& fileName);</div>
|
||||
<div class="line"><a id="l00090" name="l00090"></a><span class="lineno"> 90</span></div>
|
||||
<div class="line"><a id="l00101" name="l00101"></a><span class="lineno"> 101</span> std::vector<size_t> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a51ba09ff01fdcac1125d42f276c9a0a7">constructSpeciesIndexMap</a>() <span class="keyword">const</span>;</div>
|
||||
<div class="line"><a id="l00102" name="l00102"></a><span class="lineno"> 102</span></div>
|
||||
<div class="line"><a id="l00113" name="l00113"></a><span class="lineno"> 113</span> std::vector<size_t> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#aebb3f3548f8781506f31580706810a4e">constructReactionIndexMap</a>() <span class="keyword">const</span>;</div>
|
||||
<div class="line"><a id="l00114" name="l00114"></a><span class="lineno"> 114</span></div>
|
||||
<div class="line"><a id="l00122" name="l00122"></a><span class="lineno"> 122</span> std::vector<double> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ac231044e37e0962f664f8465e1ccb022">mapViewToFull</a>(<span class="keyword">const</span> std::vector<double>& culled) <span class="keyword">const</span>;</div>
|
||||
<div class="line"><a id="l00123" name="l00123"></a><span class="lineno"> 123</span></div>
|
||||
<div class="line"><a id="l00131" name="l00131"></a><span class="lineno"> 131</span> std::vector<double> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a97e5ee4651dbe6754678fe96e4702fee">mapFullToView</a>(<span class="keyword">const</span> std::vector<double>& full) <span class="keyword">const</span>;</div>
|
||||
<div class="line"><a id="l00132" name="l00132"></a><span class="lineno"> 132</span></div>
|
||||
<div class="line"><a id="l00141" name="l00141"></a><span class="lineno"> 141</span> <span class="keywordtype">size_t</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#a8d2c6b9a33b9c8c172bbd2c2e2e9ffaf">mapViewToFullSpeciesIndex</a>(<span class="keywordtype">size_t</span> culledSpeciesIndex) <span class="keyword">const</span>;</div>
|
||||
<div class="line"><a id="l00142" name="l00142"></a><span class="lineno"> 142</span></div>
|
||||
<div class="line"><a id="l00151" name="l00151"></a><span class="lineno"> 151</span> <span class="keywordtype">size_t</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae7d6f0ff9076d59d1245c047bbd1bdb9">mapViewToFullReactionIndex</a>(<span class="keywordtype">size_t</span> culledReactionIndex) <span class="keyword">const</span>;</div>
|
||||
<div class="line"><a id="l00152" name="l00152"></a><span class="lineno"> 152</span> </div>
|
||||
<div class="line"><a id="l00153" name="l00153"></a><span class="lineno"> 153</span> <span class="keywordtype">void</span> <a class="code hl_function" href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">validateNetworkState</a>() <span class="keyword">const</span>;</div>
|
||||
<div class="line"><a id="l00154" name="l00154"></a><span class="lineno"> 154</span> };</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00155" name="l00155"></a><span class="lineno"> 155</span>}</div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00121">engine_abstract.h:121</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_engine_view_html"><div class="ttname"><a href="classgridfire_1_1_engine_view.html">gridfire::EngineView</a></div><div class="ttdoc">Abstract base class for a "view" of a reaction network engine.</div><div class="ttdef"><b>Definition</b> <a href="engine__view__abstract_8h_source.html#l00074">engine_view_abstract.h:74</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a0a9b07176cb93b54c677b6ce71fda500"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a0a9b07176cb93b54c677b6ce71fda500">gridfire::FileDefinedEngineView::m_parser</a></div><div class="ttdeci">const io::NetworkFileParser & m_parser</div><div class="ttdoc">Parser for the network file.</div><div class="ttdef"><b>Definition</b> <a href="#l00078">engine_defined.h:78</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a0ef8804780d13bbfce0856237bb00470"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a0ef8804780d13bbfce0856237bb00470">gridfire::FileDefinedEngineView::getJacobianMatrixEntry</a></div><div class="ttdeci">double getJacobianMatrixEntry(const int i_defined, const int j_defined) const override</div><div class="ttdoc">Get an entry from the previously generated Jacobian matrix.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00056">engine_defined.cpp:56</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a1b343998b93955025a589b2b4541e33b"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a1b343998b93955025a589b2b4541e33b">gridfire::FileDefinedEngineView::m_fileName</a></div><div class="ttdeci">std::string m_fileName</div><div class="ttdoc">Name of the file defining the reaction set considered by the engine view.</div><div class="ttdef"><b>Definition</b> <a href="#l00077">engine_defined.h:77</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a27a5163157cc15c4cb3b99a5d3564dbd"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a27a5163157cc15c4cb3b99a5d3564dbd">gridfire::FileDefinedEngineView::generateStoichiometryMatrix</a></div><div class="ttdeci">void generateStoichiometryMatrix() override</div><div class="ttdoc">Generate the stoichiometry matrix for the network.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00068">engine_defined.cpp:68</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a299a0c61aa4f26029c770013c9feff5e"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a299a0c61aa4f26029c770013c9feff5e">gridfire::FileDefinedEngineView::m_activeSpecies</a></div><div class="ttdeci">std::vector< fourdst::atomic::Species > m_activeSpecies</div><div class="ttdoc">Active species in the defined engine.</div><div class="ttdef"><b>Definition</b> <a href="#l00080">engine_defined.h:80</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a2c1d88b06568f9ea4c65e794d012ebfb"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a2c1d88b06568f9ea4c65e794d012ebfb">gridfire::FileDefinedEngineView::calculateRHSAndEnergy</a></div><div class="ttdeci">StepDerivatives< double > calculateRHSAndEnergy(const std::vector< double > &Y_defined, const double T9, const double rho) const override</div><div class="ttdoc">Calculate the right-hand side (dY/dt) and energy generation.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00029">engine_defined.cpp:29</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a3b5162b7be35405285ef9f825ec2663b"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a3b5162b7be35405285ef9f825ec2663b">gridfire::FileDefinedEngineView::buildFromFile</a></div><div class="ttdeci">void buildFromFile(const std::string &fileName)</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00208">engine_defined.cpp:208</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a48b2451f96b8f5511ffc4071519c0810"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a48b2451f96b8f5511ffc4071519c0810">gridfire::FileDefinedEngineView::generateJacobianMatrix</a></div><div class="ttdeci">void generateJacobianMatrix(const std::vector< double > &Y_defined, const double T9, const double rho) override</div><div class="ttdoc">Generate the Jacobian matrix for the current state.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00045">engine_defined.cpp:45</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a4c8b273c5cb3d470567c5691b68493a3"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a4c8b273c5cb3d470567c5691b68493a3">gridfire::FileDefinedEngineView::getBaseEngine</a></div><div class="ttdeci">const DynamicEngine & getBaseEngine() const override</div><div class="ttdoc">Access the underlying engine instance.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00021">engine_defined.cpp:21</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a51ba09ff01fdcac1125d42f276c9a0a7"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a51ba09ff01fdcac1125d42f276c9a0a7">gridfire::FileDefinedEngineView::constructSpeciesIndexMap</a></div><div class="ttdeci">std::vector< size_t > constructSpeciesIndexMap() const</div><div class="ttdoc">Constructs the species index map.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00147">engine_defined.cpp:147</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a5bbea17b69cc8f81bc251a04f4435a0c"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a5bbea17b69cc8f81bc251a04f4435a0c">gridfire::FileDefinedEngineView::getNetworkReactions</a></div><div class="ttdeci">const reaction::LogicalReactionSet & getNetworkReactions() const override</div><div class="ttdoc">Get the set of logical reactions in the network.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00102">engine_defined.cpp:102</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a63f8f85e75ecaab6fa39d48d7a846187"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a63f8f85e75ecaab6fa39d48d7a846187">gridfire::FileDefinedEngineView::Config</a></div><div class="ttdeci">fourdst::config::Config Config</div><div class="ttdef"><b>Definition</b> <a href="#l00071">engine_defined.h:71</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a6e421bc748933be31bed9ff53f12b595"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a6e421bc748933be31bed9ff53f12b595">gridfire::FileDefinedEngineView::m_isStale</a></div><div class="ttdeci">bool m_isStale</div><div class="ttdef"><b>Definition</b> <a href="#l00086">engine_defined.h:86</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a7a80966c023ae722239491af58609362"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a7a80966c023ae722239491af58609362">gridfire::FileDefinedEngineView::m_config</a></div><div class="ttdeci">Config & m_config</div><div class="ttdef"><b>Definition</b> <a href="#l00073">engine_defined.h:73</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a8bb583e039b49608272997ed2d3387fa"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a8bb583e039b49608272997ed2d3387fa">gridfire::FileDefinedEngineView::getNetworkSpecies</a></div><div class="ttdeci">const std::vector< fourdst::atomic::Species > & getNetworkSpecies() const override</div><div class="ttdoc">Get the list of species in the network.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00025">engine_defined.cpp:25</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a8d2c6b9a33b9c8c172bbd2c2e2e9ffaf"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a8d2c6b9a33b9c8c172bbd2c2e2e9ffaf">gridfire::FileDefinedEngineView::mapViewToFullSpeciesIndex</a></div><div class="ttdeci">size_t mapViewToFullSpeciesIndex(size_t culledSpeciesIndex) const</div><div class="ttdoc">Maps a culled species index to a full species index.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00285">engine_defined.cpp:285</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a8f2f64bab0f516ed2a6fd529912e0acd"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd">gridfire::FileDefinedEngineView::FileDefinedEngineView</a></div><div class="ttdeci">FileDefinedEngineView(DynamicEngine &baseEngine, const std::string &fileName, const io::NetworkFileParser &parser)</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00008">engine_defined.cpp:8</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a92f14da849e99d07c1ff1347addb9263"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a92f14da849e99d07c1ff1347addb9263">gridfire::FileDefinedEngineView::setNetworkFile</a></div><div class="ttdeci">void setNetworkFile(const std::string &fileName)</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00133">engine_defined.cpp:133</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a97e5ee4651dbe6754678fe96e4702fee"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a97e5ee4651dbe6754678fe96e4702fee">gridfire::FileDefinedEngineView::mapFullToView</a></div><div class="ttdeci">std::vector< double > mapFullToView(const std::vector< double > &full) const</div><div class="ttdoc">Maps a vector of full abundances to a vector of culled abundances.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00276">engine_defined.cpp:276</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a9d93633ed4ab68de94b7274f879a0432"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a9d93633ed4ab68de94b7274f879a0432">gridfire::FileDefinedEngineView::m_logger</a></div><div class="ttdeci">quill::Logger * m_logger</div><div class="ttdef"><b>Definition</b> <a href="#l00074">engine_defined.h:74</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_a9da9224f5c99a5068f3d8cbf066e4693"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#a9da9224f5c99a5068f3d8cbf066e4693">gridfire::FileDefinedEngineView::getStoichiometryMatrixEntry</a></div><div class="ttdeci">int getStoichiometryMatrixEntry(const int speciesIndex_defined, const int reactionIndex_defined) const override</div><div class="ttdoc">Get an entry from the stoichiometry matrix.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00074">engine_defined.cpp:74</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ac231044e37e0962f664f8465e1ccb022"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ac231044e37e0962f664f8465e1ccb022">gridfire::FileDefinedEngineView::mapViewToFull</a></div><div class="ttdeci">std::vector< double > mapViewToFull(const std::vector< double > &culled) const</div><div class="ttdoc">Maps a vector of culled abundances to a vector of full abundances.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00267">engine_defined.cpp:267</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ac371fb66fd0a76a04df204c9dd9a05ef"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ac371fb66fd0a76a04df204c9dd9a05ef">gridfire::FileDefinedEngineView::calculateMolarReactionFlow</a></div><div class="ttdeci">double calculateMolarReactionFlow(const reaction::Reaction &reaction, const std::vector< double > &Y_defined, const double T9, const double rho) const override</div><div class="ttdoc">Calculate the molar reaction flow for a given reaction.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00085">engine_defined.cpp:85</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_acbb1a9bcb775e6d50de512a333afed08"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#acbb1a9bcb775e6d50de512a333afed08">gridfire::FileDefinedEngineView::LogManager</a></div><div class="ttdeci">fourdst::logging::LogManager LogManager</div><div class="ttdef"><b>Definition</b> <a href="#l00072">engine_defined.h:72</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ace3568eadaba69e7357b4386c5ca3eb0"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ace3568eadaba69e7357b4386c5ca3eb0">gridfire::FileDefinedEngineView::update</a></div><div class="ttdeci">void update(const NetIn &netIn) override</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00127">engine_defined.cpp:127</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ace3c6ea4841318c08695973ab3dcddc6"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ace3c6ea4841318c08695973ab3dcddc6">gridfire::FileDefinedEngineView::getSpeciesTimescales</a></div><div class="ttdeci">std::unordered_map< fourdst::atomic::Species, double > getSpeciesTimescales(const std::vector< double > &Y_defined, const double T9, const double rho) const override</div><div class="ttdoc">Compute timescales for all species in the network.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00108">engine_defined.cpp:108</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ad8454c98fa9a4bb45dc81059bc51fc81"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ad8454c98fa9a4bb45dc81059bc51fc81">gridfire::FileDefinedEngineView::m_baseEngine</a></div><div class="ttdeci">DynamicEngine & m_baseEngine</div><div class="ttdef"><b>Definition</b> <a href="#l00076">engine_defined.h:76</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ad96bbee6d3d37b50d9236a975ef704c0"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ad96bbee6d3d37b50d9236a975ef704c0">gridfire::FileDefinedEngineView::setScreeningModel</a></div><div class="ttdeci">void setScreeningModel(screening::ScreeningType model) override</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00139">engine_defined.cpp:139</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_adbc50f397445f92b810d80cf329b8626"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#adbc50f397445f92b810d80cf329b8626">gridfire::FileDefinedEngineView::getScreeningModel</a></div><div class="ttdeci">screening::ScreeningType getScreeningModel() const override</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00143">engine_defined.cpp:143</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ae012da2b1f6169cb13e6075a73353ab2"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ae012da2b1f6169cb13e6075a73353ab2">gridfire::FileDefinedEngineView::m_activeReactions</a></div><div class="ttdeci">reaction::LogicalReactionSet m_activeReactions</div><div class="ttdoc">Active reactions in the defined engine.</div><div class="ttdef"><b>Definition</b> <a href="#l00081">engine_defined.h:81</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ae3f99002ab2c56a5bcdec00839f8628f"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ae3f99002ab2c56a5bcdec00839f8628f">gridfire::FileDefinedEngineView::validateNetworkState</a></div><div class="ttdeci">void validateNetworkState() const</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00303">engine_defined.cpp:303</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_ae7d6f0ff9076d59d1245c047bbd1bdb9"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#ae7d6f0ff9076d59d1245c047bbd1bdb9">gridfire::FileDefinedEngineView::mapViewToFullReactionIndex</a></div><div class="ttdeci">size_t mapViewToFullReactionIndex(size_t culledReactionIndex) const</div><div class="ttdoc">Maps a culled reaction index to a full reaction index.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00294">engine_defined.cpp:294</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_aebb3f3548f8781506f31580706810a4e"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#aebb3f3548f8781506f31580706810a4e">gridfire::FileDefinedEngineView::constructReactionIndexMap</a></div><div class="ttdeci">std::vector< size_t > constructReactionIndexMap() const</div><div class="ttdoc">Constructs the reaction index map.</div><div class="ttdef"><b>Definition</b> <a href="engine__defined_8cpp_source.html#l00176">engine_defined.cpp:176</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_aebd4a1a584f2784f1df3d503645be03b"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#aebd4a1a584f2784f1df3d503645be03b">gridfire::FileDefinedEngineView::m_speciesIndexMap</a></div><div class="ttdeci">std::vector< size_t > m_speciesIndexMap</div><div class="ttdoc">Maps indices of active species to indices in the full network.</div><div class="ttdef"><b>Definition</b> <a href="#l00083">engine_defined.h:83</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_file_defined_engine_view_html_af0a77a4749a15aae87bdecfccbd1736e"><div class="ttname"><a href="classgridfire_1_1_file_defined_engine_view.html#af0a77a4749a15aae87bdecfccbd1736e">gridfire::FileDefinedEngineView::m_reactionIndexMap</a></div><div class="ttdeci">std::vector< size_t > m_reactionIndexMap</div><div class="ttdoc">Maps indices of active reactions to indices in the full network.</div><div class="ttdef"><b>Definition</b> <a href="#l00084">engine_defined.h:84</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1io_1_1_network_file_parser_html"><div class="ttname"><a href="classgridfire_1_1io_1_1_network_file_parser.html">gridfire::io::NetworkFileParser</a></div><div class="ttdef"><b>Definition</b> <a href="network__file_8h_source.html#l00017">network_file.h:17</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1reaction_1_1_reaction_html"><div class="ttname"><a href="classgridfire_1_1reaction_1_1_reaction.html">gridfire::reaction::Reaction</a></div><div class="ttdoc">Represents a single nuclear reaction from a specific data source.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00072">reaction.h:72</a></div></div>
|
||||
<div class="ttc" id="aengine__abstract_8h_html"><div class="ttname"><a href="engine__abstract_8h.html">engine_abstract.h</a></div><div class="ttdoc">Abstract interfaces for reaction network engines in GridFire.</div></div>
|
||||
<div class="ttc" id="aengine__view__abstract_8h_html"><div class="ttname"><a href="engine__view__abstract_8h.html">engine_view_abstract.h</a></div><div class="ttdoc">Abstract interfaces for engine "views" in GridFire.</div></div>
|
||||
<div class="ttc" id="anamespacegridfire_1_1reaction_html"><div class="ttname"><a href="namespacegridfire_1_1reaction.html">gridfire::reaction</a></div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00025">reaction.h:25</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_1_1reaction_html_aa86f08712565f278adacc7cd2361eb31"><div class="ttname"><a href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a></div><div class="ttdeci">TemplatedReactionSet< LogicalReaction > LogicalReactionSet</div><div class="ttdoc">A set of logical reactions.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00557">reaction.h:557</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_1_1screening_html_aa82aafbc4f8c28d0a75b60798e3a7d25"><div class="ttname"><a href="namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25">gridfire::screening::ScreeningType</a></div><div class="ttdeci">ScreeningType</div><div class="ttdef"><b>Definition</b> <a href="screening__types_8h_source.html#l00008">screening_types.h:8</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_html"><div class="ttname"><a href="namespacegridfire.html">gridfire</a></div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00024">engine_abstract.h:24</a></div></div>
|
||||
<div class="ttc" id="anetwork_8h_html"><div class="ttname"><a href="network_8h.html">network.h</a></div></div>
|
||||
<div class="ttc" id="anetwork__file_8h_html"><div class="ttname"><a href="network__file_8h.html">network_file.h</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1_net_in_html"><div class="ttname"><a href="structgridfire_1_1_net_in.html">gridfire::NetIn</a></div><div class="ttdef"><b>Definition</b> <a href="network_8h_source.html#l00053">network.h:53</a></div></div>
|
||||
<div class="ttc" id="astructgridfire_1_1_step_derivatives_html"><div class="ttname"><a href="structgridfire_1_1_step_derivatives.html">gridfire::StepDerivatives</a></div><div class="ttdoc">Structure holding derivatives and energy generation for a network step.</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00053">engine_abstract.h:53</a></div></div>
|
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<h3><a id="index_c" name="index_c"></a>- c -</h3><ul>
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|
||||
<li>calculateAllReactionFlows() : <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#abdbaf4b87629efe43ac1255dad424c0c">gridfire::AdaptiveEngineView</a></li>
|
||||
<li>calculateFactors_impl() : <a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#a2695206d46b9d2c2503f8e58c44df88f">gridfire::screening::WeakScreeningModel</a></li>
|
||||
<li>calculateMolarReactionFlow() : <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a048d4b1d41ecb4125a558d1b9ed7cb31">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a6633b1757c41dd9e1c397333f4f9e785">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#ac371fb66fd0a76a04df204c9dd9a05ef">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a9245642b741f215e52861d00e756fb3f">gridfire::GraphEngine</a></li>
|
||||
<li>calculateRHSAndEnergy() : <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a7b276b7210be588263395bdb0497fc6d">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_engine.html#ac8b56124b6b49cd1802addb74a9a47c2">gridfire::Engine</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a2c1d88b06568f9ea4c65e794d012ebfb">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a8b3baf29829c7ae0a61430ea70632bbf">gridfire::GraphEngine</a></li>
|
||||
<li>calculateScreeningFactors() : <a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60">gridfire::screening::BareScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde">gridfire::screening::ScreeningModel</a>, <a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html#afbaeaefe6b3ab3ecf81889ddc1cff76c">gridfire::screening::WeakScreeningModel</a></li>
|
||||
<li>calculateSteadyStateAbundances() : <a class="el" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a00d112f6087f6e3a93f4d40a519308d2">gridfire::solver::QSENetworkSolver</a></li>
|
||||
<li>chapter() : <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a5cb438adfefb640e4bc58e09053bd629">gridfire::reaction::Reaction</a></li>
|
||||
<li>clear() : <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a05f71d318564d880079fd6c96d59ae21">gridfire::reaction::TemplatedReactionSet< ReactionT ></a></li>
|
||||
<li>collectNetworkSpecies() : <a class="el" href="classgridfire_1_1_graph_engine.html#aedf42d83bfcc28313b6b6454034d2efa">gridfire::GraphEngine</a></li>
|
||||
<li>constructReactionIndexMap() : <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a89614f4a48f60c4170a0197f45303e7c">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#aebb3f3548f8781506f31580706810a4e">gridfire::FileDefinedEngineView</a></li>
|
||||
<li>constructSpeciesIndexMap() : <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a896d29325b4233e83d9298850b617a2d">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a51ba09ff01fdcac1125d42f276c9a0a7">gridfire::FileDefinedEngineView</a></li>
|
||||
<li>contains() : <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ab92785f331a446e51a0960b75d60b37b">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a7777ecd0f594fdf66ce57d22610fad3c">gridfire::reaction::TemplatedReactionSet< ReactionT ></a></li>
|
||||
<li>contains_product() : <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a074d3cd2421fd5d0133e47f0522403e2">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a443ec5d7138764b32975232e13071ccf">gridfire::reaction::TemplatedReactionSet< ReactionT ></a></li>
|
||||
<li>contains_reactant() : <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#abbe243affa61ba9b2cd2a7b905cd5e45">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac42606350d7557106f7954b1f114c128">gridfire::reaction::TemplatedReactionSet< ReactionT ></a></li>
|
||||
<li>contains_species() : <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad870856d206d93f27125c88d44ff9e34">gridfire::reaction::TemplatedReactionSet< ReactionT ></a></li>
|
||||
<li>convert_netIn() : <a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a56426da6f1af7eb8a6d1cc70bc8e742a">gridfire::approx8::Approx8Network</a></li>
|
||||
<li>cullReactionsByFlow() : <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a42417e96fe9fd623458af109401daf08">gridfire::AdaptiveEngineView</a></li>
|
||||
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|
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|
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116
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|
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|
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|
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<div class="contents">
|
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<div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
|
||||
|
||||
<h3><a id="index_d" name="index_d"></a>- d -</h3><ul>
|
||||
<li>df() : <a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a51687d7a9770164f79e485a763bd94b0">gridfire::solver::QSENetworkSolver::EigenFunctor< T ></a></li>
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</div>
|
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</body>
|
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</html>
|
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121
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|
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</div>
|
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<div id="projectbrief">General Purpose Nuclear Network</div>
|
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</td>
|
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|
||||
<div class="contents">
|
||||
<div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
|
||||
|
||||
<h3><a id="index_e" name="index_e"></a>- e -</h3><ul>
|
||||
<li>EigenFunctor() : <a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a94a1e5994062c32bd45c248860be6fa4">gridfire::solver::QSENetworkSolver::EigenFunctor< T ></a></li>
|
||||
<li>end() : <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#af8d23557326e6c8499fa4919ac0bd972">gridfire::reaction::LogicalReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ad19adbee44a71559a53785e3b1fc7e92">gridfire::reaction::TemplatedReactionSet< ReactionT ></a></li>
|
||||
<li>evaluate() : <a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a888734a3cdde4259e921e2efece411ee">gridfire::approx8::Approx8Network</a>, <a class="el" href="classgridfire_1_1_network.html#afc8d5172dd0e2295248b42dcb52b655c">gridfire::Network</a>, <a class="el" href="classgridfire_1_1solver_1_1_direct_network_solver.html#a0e8a4b8ef656e0b084d11bea982e412a">gridfire::solver::DirectNetworkSolver</a>, <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#ace539b0482db171845ff1bd38d76b70f">gridfire::solver::NetworkSolverStrategy< EngineT ></a>, <a class="el" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a53b5496db7fed6f345dca39656bf9c0e">gridfire::solver::QSENetworkSolver</a></li>
|
||||
<li>excess_energy() : <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa1d71e38fc55ae691dbb9ec459a612a5">gridfire::reaction::Reaction</a></li>
|
||||
<li>exportToCSV() : <a class="el" href="classgridfire_1_1_graph_engine.html#a832e2fe066381811a3e0464806ff5e95">gridfire::GraphEngine</a></li>
|
||||
<li>exportToDot() : <a class="el" href="classgridfire_1_1_graph_engine.html#adac8c7d62bae76e17fc060e86dadd929">gridfire::GraphEngine</a></li>
|
||||
</ul>
|
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|
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<!-- start footer part -->
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|
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|
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|
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118
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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|
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<tbody>
|
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|
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|
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<div id="projectname">GridFire<span id="projectnumber"> 0.0.1a</span>
|
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</div>
|
||||
<div id="projectbrief">General Purpose Nuclear Network</div>
|
||||
</td>
|
||||
</tr>
|
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|
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|
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|
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|
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|
||||
<div class="contents">
|
||||
<div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
|
||||
|
||||
<h3><a id="index_f" name="index_f"></a>- f -</h3><ul>
|
||||
<li>FileDefinedEngineView() : <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a8f2f64bab0f516ed2a6fd529912e0acd">gridfire::FileDefinedEngineView</a></li>
|
||||
<li>finalizeActiveSet() : <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aa79fb382c98461b02a2c30668491e6c5">gridfire::AdaptiveEngineView</a></li>
|
||||
<li>findReachableSpecies() : <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a0ed21f7e7c1034fc87b40d4116c4221b">gridfire::AdaptiveEngineView</a></li>
|
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|
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<!-- start footer part -->
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|
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|
||||
</body>
|
||||
</html>
|
||||
128
docs/html/functions_func_g.html
Normal file
128
docs/html/functions_func_g.html
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|
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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|
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|
||||
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|
||||
<td id="projectalign">
|
||||
<div id="projectname">GridFire<span id="projectnumber"> 0.0.1a</span>
|
||||
</div>
|
||||
<div id="projectbrief">General Purpose Nuclear Network</div>
|
||||
</td>
|
||||
</tr>
|
||||
</tbody>
|
||||
</table>
|
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|
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|
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/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&dn=expat.txt MIT */
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$(function(){initNavTree('functions_func_g.html',''); initResizable(true); });
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<div id="MSearchSelectWindow"
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||||
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|
||||
</div>
|
||||
|
||||
<div class="contents">
|
||||
<div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
|
||||
|
||||
<h3><a id="index_g" name="index_g"></a>- g -</h3><ul>
|
||||
<li>generateJacobianMatrix() : <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac9aab6f60e80a9228b2b19b1b10449ef">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a0a2fb3435ee3271ab9c806f225c61a7f">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a48b2451f96b8f5511ffc4071519c0810">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ae347ff0316e532e0298ec8c913908105">gridfire::GraphEngine</a></li>
|
||||
<li>generateStoichiometryMatrix() : <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a231193a61ba5a31e8eb92b0d4ce69111">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#aeae6d84ef74d88fd2cdf07b82e98a16f">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a27a5163157cc15c4cb3b99a5d3564dbd">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#aed726d36ee2b3796beff6067a1e4db38">gridfire::GraphEngine</a></li>
|
||||
<li>getBaseEngine() : <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aee095b30a9dce5fcb5ae2fa1d2aa192c">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_engine_view.html#ad294227f8b5cf6d970c349eabf5447a6">gridfire::EngineView< EngineT ></a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a4c8b273c5cb3d470567c5691b68493a3">gridfire::FileDefinedEngineView</a></li>
|
||||
<li>getFormat() : <a class="el" href="classgridfire_1_1_network.html#a315a123499719178286b29e2aca69118">gridfire::Network</a></li>
|
||||
<li>getJacobianMatrixEntry() : <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a4710d218c8a0fd161e994ecd60b48e58">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a05d15ff35a6bc06a2fa7eda19838bd07">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a0ef8804780d13bbfce0856237bb00470">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a303e6093591cde91430f866a04a8be7c">gridfire::GraphEngine</a></li>
|
||||
<li>getNetReactionStoichiometry() : <a class="el" href="classgridfire_1_1_graph_engine.html#a8c29d8bbde407e913be5eb77efb2c0c9">gridfire::GraphEngine</a></li>
|
||||
<li>getNetworkReactions() : <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a12cc2f352678fba9688363ba1876ab9c">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#ad2a82099edbb374bbb2c9509ccdb1037">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a5bbea17b69cc8f81bc251a04f4435a0c">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#ad45650d10fc5dff1673ae3f806d067da">gridfire::GraphEngine</a></li>
|
||||
<li>getNetworkSpecies() : <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#ac83a8efe25c0e5b9bf7756ac3a500bb1">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_engine.html#a020e1b493d6964cafdad08fde697ceb3">gridfire::Engine</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a8bb583e039b49608272997ed2d3387fa">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a0ed390f3e598ebba4e245ac90bb78767">gridfire::GraphEngine</a></li>
|
||||
<li>getReactionSetSpecies() : <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a1596de3439735a45ac344fa85ace6c82">gridfire::reaction::TemplatedReactionSet< ReactionT ></a></li>
|
||||
<li>getScreeningModel() : <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a0ab1199f900a58f309c3c36532c9164f">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a7a203f8e0f3a6744ddc912dfbcfdbcc0">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#adbc50f397445f92b810d80cf329b8626">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a697f2004e0d02c59e83c7890742d7c9a">gridfire::GraphEngine</a></li>
|
||||
<li>getSpeciesTimescales() : <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a93b38d0fdc4647f6f7340172dae17872">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a5d8ba98b230d2849035ee2507728fa15">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#ace3c6ea4841318c08695973ab3dcddc6">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a26215593544c3a52597194602e4e25dd">gridfire::GraphEngine</a></li>
|
||||
<li>getStoichiometryMatrixEntry() : <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#a67b4ea8cad115394bb4a42cc39d696f9">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#afa108dd5227dbb1045e90d7b3bd8b84f">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a9da9224f5c99a5068f3d8cbf066e4693">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a6b5feaf788bade212b7c8df7ac8c8152">gridfire::GraphEngine</a></li>
|
||||
<li>GraphEngine() : <a class="el" href="classgridfire_1_1_graph_engine.html#a9f74786ff930ab72664b31f29d05a30c">gridfire::GraphEngine</a></li>
|
||||
</ul>
|
||||
</div><!-- contents -->
|
||||
</div><!-- doc-content -->
|
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<!-- start footer part -->
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<li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
|
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|
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</div>
|
||||
</body>
|
||||
</html>
|
||||
116
docs/html/functions_func_h.html
Normal file
116
docs/html/functions_func_h.html
Normal file
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|
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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|
||||
<li>id() : <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a084c38181408ed5e6fa2a2dd4d0ec905">gridfire::reaction::Reaction</a></li>
|
||||
<li>initializeNetworkWithShortIgnition() : <a class="el" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#abaa567001df0007b714f474febae408b">gridfire::solver::QSENetworkSolver</a></li>
|
||||
<li>inputs() : <a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a5ce08aab2f1976c9258dad2b67e1c5b6">gridfire::solver::QSENetworkSolver::EigenFunctor< T ></a></li>
|
||||
<li>involvesSpecies() : <a class="el" href="classgridfire_1_1_graph_engine.html#aa6202cee0c3c481eda77cc9a91bc126b">gridfire::GraphEngine</a></li>
|
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<li>is_reverse() : <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aa67d05dfabf007c1acad34052d9a1dba">gridfire::reaction::Reaction</a></li>
|
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<li>isStiff() : <a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#a5b17b2831389829533385900ce19a37a">gridfire::approx8::Approx8Network</a>, <a class="el" href="classgridfire_1_1_network.html#ae93ad65deba79def4b77d420e7affa0b">gridfire::Network</a></li>
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116
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116
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|
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|
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<h3><a id="index_l" name="index_l"></a>- l -</h3><ul>
|
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125
docs/html/functions_func_m.html
Normal file
125
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Normal file
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|
||||
|
||||
<h3><a id="index_m" name="index_m"></a>- m -</h3><ul>
|
||||
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|
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|
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|
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|
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118
docs/html/functions_func_n.html
Normal file
118
docs/html/functions_func_n.html
Normal file
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|
||||
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|
||||
|
||||
<h3><a id="index_n" name="index_n"></a>- n -</h3><ul>
|
||||
<li>Network() : <a class="el" href="classgridfire_1_1_network.html#a20b631f2404bfdec2333f680a62abf55">gridfire::Network</a></li>
|
||||
<li>NetworkSolverStrategy() : <a class="el" href="classgridfire_1_1solver_1_1_network_solver_strategy.html#a01cbbec0eb5c3a60f50da38cdaf66505">gridfire::solver::NetworkSolverStrategy< EngineT ></a></li>
|
||||
<li>num_species() : <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a1d3c8ab6d55155f9a21ad80ed8b9ef97">gridfire::reaction::Reaction</a></li>
|
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|
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120
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|
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|
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<div id="projectbrief">General Purpose Nuclear Network</div>
|
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|
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|
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<div class="contents">
|
||||
<div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
|
||||
|
||||
<h3><a id="index_o" name="index_o"></a>- o -</h3><ul>
|
||||
<li>operator!=() : <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a2f1c115a99bc7c477a2e858ff18b1b51">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#aac76ec883b4ecebb2a94b2485dae7105">gridfire::reaction::TemplatedReactionSet< ReactionT ></a></li>
|
||||
<li>operator()() : <a class="el" href="structgridfire_1_1approx8_1_1_jacobian.html#a548431915b5895082eb96ce66d5494fa">gridfire::approx8::Jacobian</a>, <a class="el" href="structgridfire_1_1approx8_1_1_o_d_e.html#a2e1eb1ce2aa7949c225d45ce4edf03d0">gridfire::approx8::ODE</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_jacobian_functor.html#ad4fc0b406218aa2f567f5c61a4eda3c9">gridfire::solver::DirectNetworkSolver::JacobianFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#a3a7542b6c6b4c86b6fe53f54d7232919">gridfire::solver::DirectNetworkSolver::RHSFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#a16dc10cb9c1392920f8d0ba95e0bc86e">gridfire::solver::QSENetworkSolver::EigenFunctor< T ></a>, <a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_jacobian_functor.html#a3668fae1e0f8e69ff3fd87275bf4a79d">gridfire::solver::QSENetworkSolver::JacobianFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#ae0b6362d9c0a14e69c7a47233db6a86a">gridfire::solver::QSENetworkSolver::RHSFunctor</a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_logical_reaction_set_01_4.html#a4b76e7119050266952ded94d6f0544cb">std::hash< gridfire::reaction::LogicalReactionSet ></a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html#a48224b63a80690e4f0620f1312be5dd9">std::hash< gridfire::reaction::Reaction ></a>, <a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_set_01_4.html#a32b976b3e3e4e0403c1295f9b467e921">std::hash< gridfire::reaction::ReactionSet ></a></li>
|
||||
<li>operator=() : <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#ac510dce14a6033551318c0c7b241f3c8">gridfire::reaction::TemplatedReactionSet< ReactionT ></a></li>
|
||||
<li>operator==() : <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#ac426457cf0a54a15b206549422083bac">gridfire::reaction::Reaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a128660f5fbc67054f73811ed2982d24d">gridfire::reaction::TemplatedReactionSet< ReactionT ></a></li>
|
||||
<li>operator[]() : <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a638067a3e55ec2a422206055881aaaad">gridfire::reaction::TemplatedReactionSet< ReactionT ></a></li>
|
||||
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|
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|
||||
</html>
|
||||
122
docs/html/functions_func_p.html
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122
docs/html/functions_func_p.html
Normal file
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|
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|
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<div id="projectbrief">General Purpose Nuclear Network</div>
|
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||||
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|
||||
<div class="textblock">Here is a list of all functions with links to the classes they belong to:</div>
|
||||
|
||||
<h3><a id="index_p" name="index_p"></a>- p -</h3><ul>
|
||||
<li>packSpeciesTypeIndexVectors() : <a class="el" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a5d81ee5bfcfd5e77fe52201ba9e63719">gridfire::solver::QSENetworkSolver</a></li>
|
||||
<li>parse() : <a class="el" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329">gridfire::io::MESANetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf">gridfire::io::NetworkFileParser</a>, <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8">gridfire::io::SimpleReactionListFileParser</a></li>
|
||||
<li>peName() : <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a78f42664cc957e266b6cf15fda09be97">gridfire::reaction::Reaction</a></li>
|
||||
<li>populateReactionIDMap() : <a class="el" href="classgridfire_1_1_graph_engine.html#a26602e1b3c610780a47b5a6511d6d567">gridfire::GraphEngine</a></li>
|
||||
<li>populateSpeciesToIndexMap() : <a class="el" href="classgridfire_1_1_graph_engine.html#a47202c43342b96480070874bffce1391">gridfire::GraphEngine</a></li>
|
||||
<li>product_species() : <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a01c67726efbaa2ff8e4d6f2c965f485c">gridfire::reaction::Reaction</a></li>
|
||||
<li>products() : <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a6e2ff61b9e8409f2a561663628b8ce02">gridfire::reaction::Reaction</a></li>
|
||||
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</html>
|
||||
116
docs/html/functions_func_q.html
Normal file
116
docs/html/functions_func_q.html
Normal file
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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|
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123
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|
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||||
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|
||||
|
||||
<h3><a id="index_r" name="index_r"></a>- r -</h3><ul>
|
||||
<li>rateCoefficients() : <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a85968076e686e67763f4fdf4f72a892e">gridfire::reaction::Reaction</a></li>
|
||||
<li>reactant_species() : <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a855ea65e4b62fb0cddc550424a4bc923">gridfire::reaction::Reaction</a></li>
|
||||
<li>reactants() : <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a0b543e9b0bb4a21efe4b29780d9bdf5b">gridfire::reaction::Reaction</a></li>
|
||||
<li>Reaction() : <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a7dff19d387e771d96c26e98d75ee9d5c">gridfire::reaction::Reaction</a></li>
|
||||
<li>recordADTape() : <a class="el" href="classgridfire_1_1_graph_engine.html#a95563f6bc86007d9ee053a0f1e15b889">gridfire::GraphEngine</a></li>
|
||||
<li>remove_reaction() : <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a89c4c5af12aef7fbfc24316c88237e22">gridfire::reaction::TemplatedReactionSet< ReactionT ></a></li>
|
||||
<li>reserveJacobianMatrix() : <a class="el" href="classgridfire_1_1_graph_engine.html#a5a5458ed01923124f2d7e1f04f32f138">gridfire::GraphEngine</a></li>
|
||||
<li>RHSFunctor() : <a class="el" href="structgridfire_1_1solver_1_1_direct_network_solver_1_1_r_h_s_functor.html#aed201b52ea757069c17a49e9638b3d3c">gridfire::solver::DirectNetworkSolver::RHSFunctor</a>, <a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_r_h_s_functor.html#a5353d8e6f27b6c435084a167bc009e46">gridfire::solver::QSENetworkSolver::RHSFunctor</a></li>
|
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|
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126
docs/html/functions_func_s.html
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|
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|
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|
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||||
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|
||||
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|
||||
|
||||
<h3><a id="index_s" name="index_s"></a>- s -</h3><ul>
|
||||
<li>setFormat() : <a class="el" href="classgridfire_1_1_network.html#a787c601f6e4bd06600bf946efbcc98d4">gridfire::Network</a></li>
|
||||
<li>setNetworkFile() : <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#a92f14da849e99d07c1ff1347addb9263">gridfire::FileDefinedEngineView</a></li>
|
||||
<li>setScreeningModel() : <a class="el" href="classgridfire_1_1_adaptive_engine_view.html#aae4ddbef1c4e2202fd236221a4bf376b">gridfire::AdaptiveEngineView</a>, <a class="el" href="classgridfire_1_1_dynamic_engine.html#a3fb44b6f55563a2f590f31916528f2bd">gridfire::DynamicEngine</a>, <a class="el" href="classgridfire_1_1_file_defined_engine_view.html#ad96bbee6d3d37b50d9236a975ef704c0">gridfire::FileDefinedEngineView</a>, <a class="el" href="classgridfire_1_1_graph_engine.html#a8110e687844f921438bb517e1d8ce62f">gridfire::GraphEngine</a></li>
|
||||
<li>setStiff() : <a class="el" href="classgridfire_1_1approx8_1_1_approx8_network.html#aefed972081514c29cdaaa1efd857ad8d">gridfire::approx8::Approx8Network</a>, <a class="el" href="classgridfire_1_1_network.html#a84de2d691af06c4b62cfab5022b1e8fe">gridfire::Network</a></li>
|
||||
<li>shouldUpdateView() : <a class="el" href="classgridfire_1_1solver_1_1_q_s_e_network_solver.html#a35f1f6ede393f15c8bb8862f3f1c3b07">gridfire::solver::QSENetworkSolver</a></li>
|
||||
<li>SimpleReactionListFileParser() : <a class="el" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993">gridfire::io::SimpleReactionListFileParser</a></li>
|
||||
<li>size() : <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#afa41050855b842c63db16c94d2e9b897">gridfire::reaction::LogicalReaction</a>, <a class="el" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a6a1dc3c56690386ae9f6aa5c2aa37ba2">gridfire::reaction::TemplatedReactionSet< ReactionT ></a></li>
|
||||
<li>sourceLabel() : <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#a410e2ab0784ad751f82bbe55be603db0">gridfire::reaction::Reaction</a></li>
|
||||
<li>sources() : <a class="el" href="classgridfire_1_1reaction_1_1_logical_reaction.html#add094eda0e71126f8443698d7f3317f4">gridfire::reaction::LogicalReaction</a></li>
|
||||
<li>stoichiometry() : <a class="el" href="classgridfire_1_1reaction_1_1_reaction.html#aaf0c94db6536b4a9ac1ec08a5c8f01ac">gridfire::reaction::Reaction</a></li>
|
||||
<li>syncInternalMaps() : <a class="el" href="classgridfire_1_1_graph_engine.html#acdce8d87e23a2cd1504bc9472e538c0f">gridfire::GraphEngine</a></li>
|
||||
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<!-- start footer part -->
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116
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|
||||
|
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<h3><a id="index_t" name="index_t"></a>- t -</h3><ul>
|
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116
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|
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|
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|
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|
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<li>values() : <a class="el" href="structgridfire_1_1solver_1_1_q_s_e_network_solver_1_1_eigen_functor.html#aa9730f06a604c3c95ccc33ab6f0f8878">gridfire::solver::QSENetworkSolver::EigenFunctor< T ></a></li>
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|
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
<code>#include <iostream></code><br />
|
||||
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|
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<a href="logging_8cpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="preprocessor">#include "<a class="code" href="logging_8h.html">gridfire/utils/logging.h</a>"</span></div>
|
||||
<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span><span class="preprocessor">#include "<a class="code" href="engine__abstract_8h.html">gridfire/engine/engine_abstract.h</a>"</span></div>
|
||||
<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span> </div>
|
||||
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="preprocessor">#include <sstream></span></div>
|
||||
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="preprocessor">#include <iomanip></span></div>
|
||||
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="preprocessor">#include <algorithm></span></div>
|
||||
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="preprocessor">#include <ranges></span></div>
|
||||
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span><span class="preprocessor">#include <string_view></span></div>
|
||||
<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span><span class="preprocessor">#include <string></span></div>
|
||||
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span><span class="preprocessor">#include <iostream></span></div>
|
||||
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span><span class="preprocessor">#include <vector></span></div>
|
||||
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span> </div>
|
||||
<div class="foldopen" id="foldopen00013" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"><a class="line" href="namespacegridfire_1_1utils.html#af56693a70d9e2b40c8ae2c3bcd4b26c8"> 13</a></span>std::string <a class="code hl_function" href="namespacegridfire_1_1utils.html#af56693a70d9e2b40c8ae2c3bcd4b26c8">gridfire::utils::formatNuclearTimescaleLogString</a>(</div>
|
||||
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& engine,</div>
|
||||
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span> std::vector<double> <span class="keyword">const</span>& Y,</div>
|
||||
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span>) {</div>
|
||||
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span> <span class="keyword">auto</span> <span class="keyword">const</span>& timescales = engine.<a class="code hl_function" href="classgridfire_1_1_dynamic_engine.html#a5d8ba98b230d2849035ee2507728fa15">getSpeciesTimescales</a>(Y, T9, rho);</div>
|
||||
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span> </div>
|
||||
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// Figure out how wide the "Species" column needs to be:</span></div>
|
||||
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span> std::size_t maxNameLen = std::string_view(<span class="stringliteral">"Species"</span>).size();</div>
|
||||
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span> &key: timescales | std::views::keys) {</div>
|
||||
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span> std::string_view name = key.name();</div>
|
||||
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span> maxNameLen = std::max(maxNameLen, name.size());</div>
|
||||
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span> }</div>
|
||||
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span> </div>
|
||||
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// Pick a fixed width for the timescale column:</span></div>
|
||||
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span> <span class="keyword">constexpr</span> <span class="keywordtype">int</span> timescaleWidth = 12;</div>
|
||||
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span> </div>
|
||||
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span> std::ostringstream ss;</div>
|
||||
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span> ss << <span class="stringliteral">"== Timescales (s) ==\n"</span>;</div>
|
||||
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span> </div>
|
||||
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span> <span class="comment">// Header row</span></div>
|
||||
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span> ss << std::left << std::setw(static_cast<int>(maxNameLen) + 2) << <span class="stringliteral">"Species"</span></div>
|
||||
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span> << std::right << std::setw(timescaleWidth) << <span class="stringliteral">"Timescale (s)"</span> << <span class="stringliteral">"\n"</span>;</div>
|
||||
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> </div>
|
||||
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> <span class="comment">// Underline</span></div>
|
||||
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span> ss << std::string(static_cast<int>(maxNameLen) + 2 + timescaleWidth, <span class="charliteral">'='</span>) << <span class="stringliteral">"\n"</span>;</div>
|
||||
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> </div>
|
||||
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span> ss << std::scientific;</div>
|
||||
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> </div>
|
||||
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> <span class="comment">// Data rows</span></div>
|
||||
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> <span class="keywordflow">for</span> (<span class="keyword">auto</span> <span class="keyword">const</span>& [species, timescale] : timescales) {</div>
|
||||
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span> <span class="keyword">const</span> std::string_view name = species.name();</div>
|
||||
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span> ss << std::left << std::setw(static_cast<int>(maxNameLen) + 2) << name;</div>
|
||||
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span> </div>
|
||||
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> <span class="keywordflow">if</span> (std::isinf(timescale)) {</div>
|
||||
<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> ss << std::right << std::setw(timescaleWidth) << <span class="stringliteral">"inf"</span> << <span class="stringliteral">"\n"</span>;</div>
|
||||
<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span> } <span class="keywordflow">else</span> {</div>
|
||||
<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> ss << std::right << std::setw(timescaleWidth)</div>
|
||||
<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span> << std::scientific << std::setprecision(3) << timescale << <span class="stringliteral">"\n"</span>;</div>
|
||||
<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span> }</div>
|
||||
<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span> }</div>
|
||||
<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span> </div>
|
||||
<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span> <span class="comment">// Footer underline</span></div>
|
||||
<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"> 57</span> ss << std::string(static_cast<int>(maxNameLen) + 2 + timescaleWidth, <span class="charliteral">'='</span>) << <span class="stringliteral">"\n"</span>;</div>
|
||||
<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span> </div>
|
||||
<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span> <span class="keywordflow">return</span> ss.str();</div>
|
||||
<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span>}</div>
|
||||
</div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html">gridfire::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> <a href="engine__abstract_8h_source.html#l00121">engine_abstract.h:121</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1_dynamic_engine_html_a5d8ba98b230d2849035ee2507728fa15"><div class="ttname"><a href="classgridfire_1_1_dynamic_engine.html#a5d8ba98b230d2849035ee2507728fa15">gridfire::DynamicEngine::getSpeciesTimescales</a></div><div class="ttdeci">virtual std::unordered_map< fourdst::atomic::Species, double > getSpeciesTimescales(const std::vector< double > &Y, double T9, double rho) const =0</div><div class="ttdoc">Compute timescales for all species in the network.</div></div>
|
||||
<div class="ttc" id="aengine__abstract_8h_html"><div class="ttname"><a href="engine__abstract_8h.html">engine_abstract.h</a></div><div class="ttdoc">Abstract interfaces for reaction network engines in GridFire.</div></div>
|
||||
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<div class="ttc" id="anamespacegridfire_1_1utils_html_af56693a70d9e2b40c8ae2c3bcd4b26c8"><div class="ttname"><a href="namespacegridfire_1_1utils.html#af56693a70d9e2b40c8ae2c3bcd4b26c8">gridfire::utils::formatNuclearTimescaleLogString</a></div><div class="ttdeci">std::string formatNuclearTimescaleLogString(const DynamicEngine &engine, const std::vector< double > &Y, const double T9, const double rho)</div><div class="ttdef"><b>Definition</b> <a href="#l00013">logging.cpp:13</a></div></div>
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<div id="projectbrief">General Purpose Nuclear Network</div>
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|
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|
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|
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<a href="logging_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="preprocessor">#pragma once</span></div>
|
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|
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|
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|
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|
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|
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|
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<div class="foldopen" id="foldopen00008" data-start="{" data-end="}">
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|
||||
<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span> std::string <a class="code hl_function" href="namespacegridfire_1_1utils.html#af56693a70d9e2b40c8ae2c3bcd4b26c8">formatNuclearTimescaleLogString</a>(</div>
|
||||
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span> <span class="keyword">const</span> <a class="code hl_class" href="classgridfire_1_1_dynamic_engine.html">DynamicEngine</a>& engine,</div>
|
||||
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span> <span class="keyword">const</span> std::vector<double>& Y,</div>
|
||||
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|
||||
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
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<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span> );</div>
|
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|
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|
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|
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|
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<a href="#typedef-members">Typedefs</a> |
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<a href="#enum-members">Enumerations</a> |
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<a href="#func-members">Functions</a> </div>
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<div class="headertitle"><div class="title">gridfire::screening Namespace Reference</div></div>
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Classes</h2></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1_bare_screening_model.html">BareScreeningModel</a></td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">ScreeningModel</a></td></tr>
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<tr class="separator:"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">WeakScreeningModel</a></td></tr>
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<tr class="memitem:aa82aafbc4f8c28d0a75b60798e3a7d25" id="r_aa82aafbc4f8c28d0a75b60798e3a7d25"><td class="memItemLeft" align="right" valign="top">enum class  </td><td class="memItemRight" valign="bottom"><a class="el" href="#aa82aafbc4f8c28d0a75b60798e3a7d25">ScreeningType</a> { <a class="el" href="#aa82aafbc4f8c28d0a75b60798e3a7d25ad80b95b1abb9c8659fa4cc9d3d29bb71">BARE</a>
|
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, <a class="el" href="#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8">WEAK</a>
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Functions</h2></td></tr>
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<tr class="memitem:a6ca8556d27ac373e176f5b23437c416e" id="r_a6ca8556d27ac373e176f5b23437c416e"><td class="memItemLeft" align="right" valign="top">std::unique_ptr< <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">ScreeningModel</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="#a6ca8556d27ac373e176f5b23437c416e">selectScreeningModel</a> (<a class="el" href="#aa82aafbc4f8c28d0a75b60798e3a7d25">ScreeningType</a> type)</td></tr>
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<h2 class="groupheader">Typedef Documentation</h2>
|
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<a id="ae7dd1a7ccb7bf3c05084094ab008d8a3" name="ae7dd1a7ccb7bf3c05084094ab008d8a3"></a>
|
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<h2 class="memtitle"><span class="permalink"><a href="#ae7dd1a7ccb7bf3c05084094ab008d8a3">◆ </a></span>ADDouble</h2>
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<td class="memname">typedef CppAD::AD< double > <a class="el" href="#ae7dd1a7ccb7bf3c05084094ab008d8a3">gridfire::screening::ADDouble</a> = CppAD::AD<double></td>
|
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<p class="definition">Definition at line <a class="el" href="screening__bare_8cpp_source.html#l00011">11</a> of file <a class="el" href="screening__bare_8cpp_source.html">screening_bare.cpp</a>.</p>
|
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|
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|
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|
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<h2 class="groupheader">Enumeration Type Documentation</h2>
|
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<a id="aa82aafbc4f8c28d0a75b60798e3a7d25" name="aa82aafbc4f8c28d0a75b60798e3a7d25"></a>
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<h2 class="memtitle"><span class="permalink"><a href="#aa82aafbc4f8c28d0a75b60798e3a7d25">◆ </a></span>ScreeningType</h2>
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<td class="memname">enum class <a class="el" href="#aa82aafbc4f8c28d0a75b60798e3a7d25">gridfire::screening::ScreeningType</a></td>
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<span class="mlabels"><span class="mlabel strong">strong</span></span> </td>
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<tr><th colspan="2">Enumerator</th></tr><tr><td class="fieldname"><a id="aa82aafbc4f8c28d0a75b60798e3a7d25ad80b95b1abb9c8659fa4cc9d3d29bb71" name="aa82aafbc4f8c28d0a75b60798e3a7d25ad80b95b1abb9c8659fa4cc9d3d29bb71"></a>BARE </td><td class="fielddoc"><p>No screening applied. </p>
|
||||
</td></tr>
|
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<tr><td class="fieldname"><a id="aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8" name="aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8"></a>WEAK </td><td class="fielddoc"><p>Weak screening model. </p>
|
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</td></tr>
|
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|
||||
|
||||
<p class="definition">Definition at line <a class="el" href="screening__types_8h_source.html#l00008">8</a> of file <a class="el" href="screening__types_8h_source.html">screening_types.h</a>.</p>
|
||||
|
||||
</div>
|
||||
</div>
|
||||
<h2 class="groupheader">Function Documentation</h2>
|
||||
<a id="a6ca8556d27ac373e176f5b23437c416e" name="a6ca8556d27ac373e176f5b23437c416e"></a>
|
||||
<h2 class="memtitle"><span class="permalink"><a href="#a6ca8556d27ac373e176f5b23437c416e">◆ </a></span>selectScreeningModel()</h2>
|
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|
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<div class="memitem">
|
||||
<div class="memproto">
|
||||
<table class="memname">
|
||||
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|
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<td class="memname">std::unique_ptr< <a class="el" href="classgridfire_1_1screening_1_1_screening_model.html">ScreeningModel</a> > gridfire::screening::selectScreeningModel </td>
|
||||
<td>(</td>
|
||||
<td class="paramtype"><a class="el" href="#aa82aafbc4f8c28d0a75b60798e3a7d25">ScreeningType</a></td> <td class="paramname"><span class="paramname"><em>type</em></span></td><td>)</td>
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<p class="definition">Definition at line <a class="el" href="screening__types_8cpp_source.html#l00009">9</a> of file <a class="el" href="screening__types_8cpp_source.html">screening_types.cpp</a>.</p>
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<!-- start footer part -->
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<li class="footer">Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.13.2 </li>
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12
docs/html/namespacegridfire_1_1screening.js
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docs/html/namespacegridfire_1_1screening.js
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|
||||
var namespacegridfire_1_1screening =
|
||||
[
|
||||
[ "BareScreeningModel", "classgridfire_1_1screening_1_1_bare_screening_model.html", "classgridfire_1_1screening_1_1_bare_screening_model" ],
|
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[ "ScreeningModel", "classgridfire_1_1screening_1_1_screening_model.html", "classgridfire_1_1screening_1_1_screening_model" ],
|
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[ "WeakScreeningModel", "classgridfire_1_1screening_1_1_weak_screening_model.html", "classgridfire_1_1screening_1_1_weak_screening_model" ],
|
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|
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[ "ScreeningType", "namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25", [
|
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[ "BARE", "namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25ad80b95b1abb9c8659fa4cc9d3d29bb71", null ],
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[ "WEAK", "namespacegridfire_1_1screening.html#aa82aafbc4f8c28d0a75b60798e3a7d25a32c7d8943bec86a6d7d5e03598670ca8", null ]
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] ],
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[ "selectScreeningModel", "namespacegridfire_1_1screening.html#a6ca8556d27ac373e176f5b23437c416e", null ]
|
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];
|
||||
157
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<h2 class="memtitle"><span class="permalink"><a href="#af56693a70d9e2b40c8ae2c3bcd4b26c8">◆ </a></span>formatNuclearTimescaleLogString()</h2>
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<p class="definition">Definition at line <a class="el" href="logging_8cpp_source.html#l00013">13</a> of file <a class="el" href="logging_8cpp_source.html">logging.cpp</a>.</p>
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<a href="network__file_8cpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="preprocessor">#include "<a class="code" href="network__file_8h.html">gridfire/io/network_file.h</a>"</span></div>
|
||||
<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span> </div>
|
||||
<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="preprocessor">#include <string></span></div>
|
||||
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="preprocessor">#include <vector></span></div>
|
||||
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="preprocessor">#include <algorithm></span></div>
|
||||
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="preprocessor">#include <fstream></span></div>
|
||||
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="preprocessor">#include <stdexcept></span></div>
|
||||
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span> </div>
|
||||
<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span><span class="preprocessor">#include "quill/LogMacros.h"</span></div>
|
||||
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span> </div>
|
||||
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacegridfire_1_1io.html">gridfire::io</a> {</div>
|
||||
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span> <span class="keyword">namespace </span>{</div>
|
||||
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span> <span class="keyword">inline</span> <span class="keywordtype">void</span> ltrim(std::string &s) {</div>
|
||||
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span> s.erase(</div>
|
||||
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span> s.begin(),</div>
|
||||
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span> std::ranges::find_if(s,</div>
|
||||
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span> [](<span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span> ch) {</div>
|
||||
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span> return !std::isspace(ch);</div>
|
||||
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span> })</div>
|
||||
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span> );</div>
|
||||
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span> }</div>
|
||||
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span> </div>
|
||||
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> <span class="keyword">inline</span> <span class="keywordtype">void</span> rtrim(std::string &s) {</div>
|
||||
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span> s.erase(</div>
|
||||
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span> std::find_if(</div>
|
||||
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span> s.rbegin(),</div>
|
||||
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span> s.rend(),</div>
|
||||
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> [](<span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span> ch) {</div>
|
||||
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span> return !std::isspace(ch);</div>
|
||||
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span> }).base(),</div>
|
||||
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span> s.end()</div>
|
||||
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span> );</div>
|
||||
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span> }</div>
|
||||
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span> </div>
|
||||
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span> <span class="keyword">inline</span> <span class="keywordtype">void</span> trim(std::string &s) {</div>
|
||||
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span> ltrim(s);</div>
|
||||
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> rtrim(s);</div>
|
||||
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> }</div>
|
||||
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span> </div>
|
||||
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> </div>
|
||||
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span> }</div>
|
||||
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993"> 42</a></span> <a class="code hl_function" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993">SimpleReactionListFileParser::SimpleReactionListFileParser</a>() {}</div>
|
||||
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> </div>
|
||||
<div class="foldopen" id="foldopen00044" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8"> 44</a></span> <a class="code hl_struct" href="structgridfire_1_1io_1_1_parsed_network_data.html">ParsedNetworkData</a> <a class="code hl_function" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8">SimpleReactionListFileParser::parse</a>(<span class="keyword">const</span> std::string& filename)<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66">m_logger</a>, <span class="stringliteral">"Parsing simple reaction list file: {}"</span>, filename);</div>
|
||||
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span> </div>
|
||||
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span> std::ifstream file(filename);</div>
|
||||
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> <span class="keywordflow">if</span> (!file.is_open()) {</div>
|
||||
<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> LOG_ERROR(<a class="code hl_variable" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66">m_logger</a>, <span class="stringliteral">"Failed to open file: {}"</span>, filename);</div>
|
||||
<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span> <a class="code hl_variable" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66">m_logger</a> -> flush_log();</div>
|
||||
<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Could not open file: "</span> + filename);</div>
|
||||
<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span> }</div>
|
||||
<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span> </div>
|
||||
<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span> <a class="code hl_struct" href="structgridfire_1_1io_1_1_parsed_network_data.html">ParsedNetworkData</a> parsed;</div>
|
||||
<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span> std::string line;</div>
|
||||
<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span> <span class="keywordtype">int</span> line_number = 0;</div>
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<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span> line_number++;</div>
|
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<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span> LOG_TRACE_L3(<a class="code hl_variable" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66">m_logger</a>, <span class="stringliteral">"Parsing reaction list file {}, line {}: {}"</span>, filename, line_number, line);</div>
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<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span> </div>
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|
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<div class="line"><a id="l00065" name="l00065"></a><span class="lineno"> 65</span> </div>
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<div class="line"><a id="l00070" name="l00070"></a><span class="lineno"> 70</span> }</div>
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<div class="line"><a id="l00071" name="l00071"></a><span class="lineno"> 71</span> parsed.<a class="code hl_variable" href="structgridfire_1_1io_1_1_parsed_network_data.html#a5145c672877638e6113abf1f719b246d">reactionPENames</a>.push_back(line);</div>
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<div class="line"><a id="l00072" name="l00072"></a><span class="lineno"> 72</span> }</div>
|
||||
<div class="line"><a id="l00073" name="l00073"></a><span class="lineno"> 73</span> LOG_TRACE_L1(<a class="code hl_variable" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66">m_logger</a>, <span class="stringliteral">"Parsed {} reactions from file: {}"</span>, parsed.<a class="code hl_variable" href="structgridfire_1_1io_1_1_parsed_network_data.html#a5145c672877638e6113abf1f719b246d">reactionPENames</a>.size(), filename);</div>
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|
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<div class="line"><a id="l00075" name="l00075"></a><span class="lineno"> 75</span> }</div>
|
||||
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<div class="line"><a id="l00076" name="l00076"></a><span class="lineno"> 76</span> </div>
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<div class="line"><a id="l00077" name="l00077"></a><span class="lineno"> 77</span>}</div>
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<div class="ttc" id="aclassgridfire_1_1io_1_1_simple_reaction_list_file_parser_html_a4df01e3a93e1291d2cde0458545325f8"><div class="ttname"><a href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8">gridfire::io::SimpleReactionListFileParser::parse</a></div><div class="ttdeci">ParsedNetworkData parse(const std::string &filename) const override</div><div class="ttdef"><b>Definition</b> <a href="#l00044">network_file.cpp:44</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1io_1_1_simple_reaction_list_file_parser_html_acef7eafe3cbea159259f69c88d309b66"><div class="ttname"><a href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66">gridfire::io::SimpleReactionListFileParser::m_logger</a></div><div class="ttdeci">quill::Logger * m_logger</div><div class="ttdef"><b>Definition</b> <a href="network__file_8h_source.html#l00033">network_file.h:33</a></div></div>
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<div class="ttc" id="astructgridfire_1_1io_1_1_parsed_network_data_html_a5145c672877638e6113abf1f719b246d"><div class="ttname"><a href="structgridfire_1_1io_1_1_parsed_network_data.html#a5145c672877638e6113abf1f719b246d">gridfire::io::ParsedNetworkData::reactionPENames</a></div><div class="ttdeci">std::vector< std::string > reactionPENames</div><div class="ttdef"><b>Definition</b> <a href="network__file_8h_source.html#l00014">network_file.h:14</a></div></div>
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<div class="textblock"><code>#include "fourdst/config/config.h"</code><br />
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|
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|
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<div id="projectbrief">General Purpose Nuclear Network</div>
|
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<div class="headertitle"><div class="title">network_file.h</div></div>
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|
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<a href="network__file_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="preprocessor">#pragma once</span></div>
|
||||
<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span> </div>
|
||||
<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="preprocessor">#include "fourdst/config/config.h"</span></div>
|
||||
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="preprocessor">#include "fourdst/logging/logging.h"</span></div>
|
||||
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span> </div>
|
||||
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="preprocessor">#include "quill/Logger.h"</span></div>
|
||||
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span> </div>
|
||||
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span><span class="preprocessor">#include <string></span></div>
|
||||
<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span><span class="preprocessor">#include <vector></span></div>
|
||||
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span> </div>
|
||||
<div class="foldopen" id="foldopen00011" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"><a class="line" href="namespacegridfire_1_1io.html"> 11</a></span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacegridfire_1_1io.html">gridfire::io</a> {</div>
|
||||
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span> </div>
|
||||
<div class="foldopen" id="foldopen00013" data-start="{" data-end="};">
|
||||
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"><a class="line" href="structgridfire_1_1io_1_1_parsed_network_data.html"> 13</a></span> <span class="keyword">struct </span><a class="code hl_struct" href="structgridfire_1_1io_1_1_parsed_network_data.html">ParsedNetworkData</a> {</div>
|
||||
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"><a class="line" href="structgridfire_1_1io_1_1_parsed_network_data.html#a5145c672877638e6113abf1f719b246d"> 14</a></span> std::vector<std::string> <a class="code hl_variable" href="structgridfire_1_1io_1_1_parsed_network_data.html#a5145c672877638e6113abf1f719b246d">reactionPENames</a>;</div>
|
||||
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span> };</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span> </div>
|
||||
<div class="foldopen" id="foldopen00017" data-start="{" data-end="};">
|
||||
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_network_file_parser.html"> 17</a></span> <span class="keyword">class </span><a class="code hl_class" href="classgridfire_1_1io_1_1_network_file_parser.html">NetworkFileParser</a> {</div>
|
||||
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span> <span class="keyword">public</span>:</div>
|
||||
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3"> 19</a></span> <span class="keyword">virtual</span> <a class="code hl_function" href="classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3">~NetworkFileParser</a>() = <span class="keywordflow">default</span>;</div>
|
||||
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span> </div>
|
||||
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf"> 21</a></span> [[nodiscard]] <span class="keyword">virtual</span> <a class="code hl_struct" href="structgridfire_1_1io_1_1_parsed_network_data.html">ParsedNetworkData</a> <a class="code hl_function" href="classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf">parse</a>(<span class="keyword">const</span> std::string& filename) <span class="keyword">const</span> = 0;</div>
|
||||
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span> </div>
|
||||
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> };</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span> </div>
|
||||
<div class="foldopen" id="foldopen00025" data-start="{" data-end="};">
|
||||
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html"> 25</a></span> <span class="keyword">class </span><a class="code hl_function" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993">SimpleReactionListFileParser</a> final : <span class="keyword">public</span> <a class="code hl_class" href="classgridfire_1_1io_1_1_network_file_parser.html">NetworkFileParser</a> {</div>
|
||||
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span> <span class="keyword">public</span>:</div>
|
||||
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span> <span class="keyword">explicit</span> <a class="code hl_function" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993">SimpleReactionListFileParser</a>();</div>
|
||||
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> <a class="code hl_struct" href="structgridfire_1_1io_1_1_parsed_network_data.html">ParsedNetworkData</a> <a class="code hl_function" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8">parse</a>(<span class="keyword">const</span> std::string& filename) <span class="keyword">const override</span>;</div>
|
||||
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span> <span class="keyword">private</span>:</div>
|
||||
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036"> 30</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036">Config</a> = fourdst::config::Config;</div>
|
||||
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de"> 31</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a6f8f9a1f54cd2be5ec66c3181be892de">LogManager</a> = fourdst::logging::LogManager;</div>
|
||||
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874"> 32</a></span> <a class="code hl_typedef" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#ad913155a5a2a36b29e4ce4ca8d71c036">Config</a>& <a class="code hl_variable" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874">m_config</a> = Config::getInstance();</div>
|
||||
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66"> 33</a></span> quill::Logger* <a class="code hl_variable" href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#acef7eafe3cbea159259f69c88d309b66">m_logger</a> = LogManager::getInstance().getLogger(<span class="stringliteral">"log"</span>);</div>
|
||||
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span> };</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span> </div>
|
||||
<div class="foldopen" id="foldopen00036" data-start="{" data-end="};">
|
||||
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html"> 36</a></span> <span class="keyword">class </span><a class="code hl_function" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c">MESANetworkFileParser</a> final : <span class="keyword">public</span> <a class="code hl_class" href="classgridfire_1_1io_1_1_network_file_parser.html">NetworkFileParser</a> {</div>
|
||||
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> <span class="keyword">public</span>:</div>
|
||||
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c"> 38</a></span> <span class="keyword">explicit</span> <a class="code hl_function" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c">MESANetworkFileParser</a>(<span class="keyword">const</span> std::string& filename);</div>
|
||||
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329"> 39</a></span> <a class="code hl_struct" href="structgridfire_1_1io_1_1_parsed_network_data.html">ParsedNetworkData</a> <a class="code hl_function" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329">parse</a>(<span class="keyword">const</span> std::string& filename) <span class="keyword">const override</span>;</div>
|
||||
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> <span class="keyword">private</span>:</div>
|
||||
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b"> 41</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b">Config</a> = fourdst::config::Config;</div>
|
||||
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055"> 42</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055">LogManager</a> = fourdst::logging::LogManager;</div>
|
||||
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d"> 43</a></span> <a class="code hl_typedef" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b">Config</a>& <a class="code hl_variable" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d">m_config</a> = Config::getInstance();</div>
|
||||
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937"> 44</a></span> quill::Logger* <a class="code hl_variable" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937">m_logger</a> = LogManager::getInstance().getLogger(<span class="stringliteral">"log"</span>);</div>
|
||||
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span> </div>
|
||||
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"><a class="line" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099"> 46</a></span> std::string <a class="code hl_variable" href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099">m_filename</a>;</div>
|
||||
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span> };</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span>}</div>
|
||||
</div>
|
||||
<div class="ttc" id="aclassgridfire_1_1io_1_1_m_e_s_a_network_file_parser_html_a568194277733b5c537901f8af32ee329"><div class="ttname"><a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a568194277733b5c537901f8af32ee329">gridfire::io::MESANetworkFileParser::parse</a></div><div class="ttdeci">ParsedNetworkData parse(const std::string &filename) const override</div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1io_1_1_m_e_s_a_network_file_parser_html_a84aa6894a331ad57bdab1e1ab85d4055"><div class="ttname"><a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#a84aa6894a331ad57bdab1e1ab85d4055">gridfire::io::MESANetworkFileParser::LogManager</a></div><div class="ttdeci">fourdst::logging::LogManager LogManager</div><div class="ttdef"><b>Definition</b> <a href="#l00042">network_file.h:42</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1io_1_1_m_e_s_a_network_file_parser_html_ab7f82597abf17f16c401bcdf528bd099"><div class="ttname"><a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab7f82597abf17f16c401bcdf528bd099">gridfire::io::MESANetworkFileParser::m_filename</a></div><div class="ttdeci">std::string m_filename</div><div class="ttdef"><b>Definition</b> <a href="#l00046">network_file.h:46</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1io_1_1_m_e_s_a_network_file_parser_html_ab9c683289d48e58edf06bf59215b4937"><div class="ttname"><a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ab9c683289d48e58edf06bf59215b4937">gridfire::io::MESANetworkFileParser::m_logger</a></div><div class="ttdeci">quill::Logger * m_logger</div><div class="ttdef"><b>Definition</b> <a href="#l00044">network_file.h:44</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1io_1_1_m_e_s_a_network_file_parser_html_ac5963d0da6780de753df996b490f8d2c"><div class="ttname"><a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#ac5963d0da6780de753df996b490f8d2c">gridfire::io::MESANetworkFileParser::MESANetworkFileParser</a></div><div class="ttdeci">MESANetworkFileParser(const std::string &filename)</div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1io_1_1_m_e_s_a_network_file_parser_html_aea206c3a7600db8d657666fef88fa20d"><div class="ttname"><a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#aea206c3a7600db8d657666fef88fa20d">gridfire::io::MESANetworkFileParser::m_config</a></div><div class="ttdeci">Config & m_config</div><div class="ttdef"><b>Definition</b> <a href="#l00043">network_file.h:43</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1io_1_1_m_e_s_a_network_file_parser_html_af43ad8375abf1cedfdccc296b9958c2b"><div class="ttname"><a href="classgridfire_1_1io_1_1_m_e_s_a_network_file_parser.html#af43ad8375abf1cedfdccc296b9958c2b">gridfire::io::MESANetworkFileParser::Config</a></div><div class="ttdeci">fourdst::config::Config Config</div><div class="ttdef"><b>Definition</b> <a href="#l00041">network_file.h:41</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1io_1_1_network_file_parser_html"><div class="ttname"><a href="classgridfire_1_1io_1_1_network_file_parser.html">gridfire::io::NetworkFileParser</a></div><div class="ttdef"><b>Definition</b> <a href="#l00017">network_file.h:17</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1io_1_1_network_file_parser_html_a66e8e724c903d6ef4dd1c8103276bdbf"><div class="ttname"><a href="classgridfire_1_1io_1_1_network_file_parser.html#a66e8e724c903d6ef4dd1c8103276bdbf">gridfire::io::NetworkFileParser::parse</a></div><div class="ttdeci">virtual ParsedNetworkData parse(const std::string &filename) const =0</div></div>
|
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<div class="ttc" id="aclassgridfire_1_1io_1_1_network_file_parser_html_a9b4095d06fad5df3805c92ae97b3eab3"><div class="ttname"><a href="classgridfire_1_1io_1_1_network_file_parser.html#a9b4095d06fad5df3805c92ae97b3eab3">gridfire::io::NetworkFileParser::~NetworkFileParser</a></div><div class="ttdeci">virtual ~NetworkFileParser()=default</div></div>
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<div class="ttc" id="aclassgridfire_1_1io_1_1_simple_reaction_list_file_parser_html_a4061e99bd77a3de0d6d9e317bfc74874"><div class="ttname"><a href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4061e99bd77a3de0d6d9e317bfc74874">gridfire::io::SimpleReactionListFileParser::m_config</a></div><div class="ttdeci">Config & m_config</div><div class="ttdef"><b>Definition</b> <a href="#l00032">network_file.h:32</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1io_1_1_simple_reaction_list_file_parser_html_a4df01e3a93e1291d2cde0458545325f8"><div class="ttname"><a href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#a4df01e3a93e1291d2cde0458545325f8">gridfire::io::SimpleReactionListFileParser::parse</a></div><div class="ttdeci">ParsedNetworkData parse(const std::string &filename) const override</div><div class="ttdef"><b>Definition</b> <a href="network__file_8cpp_source.html#l00044">network_file.cpp:44</a></div></div>
|
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|
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|
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<div class="ttc" id="aclassgridfire_1_1io_1_1_simple_reaction_list_file_parser_html_afc8ed91e8c98205c505e3d9f0cff1993"><div class="ttname"><a href="classgridfire_1_1io_1_1_simple_reaction_list_file_parser.html#afc8ed91e8c98205c505e3d9f0cff1993">gridfire::io::SimpleReactionListFileParser::SimpleReactionListFileParser</a></div><div class="ttdeci">SimpleReactionListFileParser()</div><div class="ttdef"><b>Definition</b> <a href="network__file_8cpp_source.html#l00042">network_file.cpp:42</a></div></div>
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<div class="textblock"><code>#include "<a class="el" href="reaction_8h_source.html">gridfire/reaction/reaction.h</a>"</code><br />
|
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<a href="screening__abstract_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="preprocessor">#pragma once</span></div>
|
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<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span> </div>
|
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<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="preprocessor">#include "<a class="code" href="reaction_8h.html">gridfire/reaction/reaction.h</a>"</span></div>
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<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span> </div>
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<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="preprocessor">#include "fourdst/composition/atomicSpecies.h"</span></div>
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<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span> </div>
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<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="preprocessor">#include "cppad/cppad.hpp"</span></div>
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<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span> </div>
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<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span><span class="preprocessor">#include <vector></span></div>
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<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span> </div>
|
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<div class="foldopen" id="foldopen00011" data-start="{" data-end="}">
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<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"><a class="line" href="namespacegridfire_1_1screening.html"> 11</a></span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacegridfire_1_1screening.html">gridfire::screening</a> {</div>
|
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<div class="foldopen" id="foldopen00012" data-start="{" data-end="};">
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<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"><a class="line" href="classgridfire_1_1screening_1_1_screening_model.html"> 12</a></span> <span class="keyword">class </span><a class="code hl_class" href="classgridfire_1_1screening_1_1_screening_model.html">ScreeningModel</a> {</div>
|
||||
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span> <span class="keyword">public</span>:</div>
|
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<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"><a class="line" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d"> 14</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> = CppAD::AD<double>;</div>
|
||||
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"><a class="line" href="classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7"> 15</a></span> <span class="keyword">virtual</span> <a class="code hl_function" href="classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7">~ScreeningModel</a>() = <span class="keywordflow">default</span>;</div>
|
||||
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span> </div>
|
||||
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"><a class="line" href="classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde"> 17</a></span> <span class="keyword">virtual</span> std::vector<double> <a class="code hl_function" href="classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde">calculateScreeningFactors</a>(</div>
|
||||
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span> <span class="keyword">const</span> <a class="code hl_typedef" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a>& reactions,</div>
|
||||
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span> <span class="keyword">const</span> std::vector<fourdst::atomic::Species>& species,</div>
|
||||
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span> <span class="keyword">const</span> std::vector<double>& Y,</div>
|
||||
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> ) <span class="keyword">const</span> = 0;</div>
|
||||
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span> </div>
|
||||
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"><a class="line" href="classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22"> 25</a></span> <span class="keyword">virtual</span> std::vector<ADDouble> <a class="code hl_function" href="classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22">calculateScreeningFactors</a>(</div>
|
||||
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span> <span class="keyword">const</span> <a class="code hl_typedef" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a>& reactions,</div>
|
||||
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span> <span class="keyword">const</span> std::vector<fourdst::atomic::Species>& species,</div>
|
||||
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> <span class="keyword">const</span> std::vector<ADDouble>& Y,</div>
|
||||
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span> <span class="keyword">const</span> <a class="code hl_typedef" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> T9,</div>
|
||||
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span> <span class="keyword">const</span> <a class="code hl_typedef" href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">ADDouble</a> rho</div>
|
||||
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span> ) <span class="keyword">const</span> = 0;</div>
|
||||
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span> };</div>
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||||
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<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span>}</div>
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<div class="ttc" id="aclassgridfire_1_1screening_1_1_screening_model_html"><div class="ttname"><a href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></div><div class="ttdef"><b>Definition</b> <a href="#l00012">screening_abstract.h:12</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1screening_1_1_screening_model_html_a107ff2897f040d6f27f69d56a0bdd28d"><div class="ttname"><a href="classgridfire_1_1screening_1_1_screening_model.html#a107ff2897f040d6f27f69d56a0bdd28d">gridfire::screening::ScreeningModel::ADDouble</a></div><div class="ttdeci">CppAD::AD< double > ADDouble</div><div class="ttdef"><b>Definition</b> <a href="#l00014">screening_abstract.h:14</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1screening_1_1_screening_model_html_a6c381a823cb9c1680d3e9c846da4ae22"><div class="ttname"><a href="classgridfire_1_1screening_1_1_screening_model.html#a6c381a823cb9c1680d3e9c846da4ae22">gridfire::screening::ScreeningModel::calculateScreeningFactors</a></div><div class="ttdeci">virtual std::vector< ADDouble > calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< ADDouble > &Y, const ADDouble T9, const ADDouble rho) const =0</div></div>
|
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<div class="ttc" id="aclassgridfire_1_1screening_1_1_screening_model_html_aaec9184d80c86a2d8674e395dad81bde"><div class="ttname"><a href="classgridfire_1_1screening_1_1_screening_model.html#aaec9184d80c86a2d8674e395dad81bde">gridfire::screening::ScreeningModel::calculateScreeningFactors</a></div><div class="ttdeci">virtual std::vector< double > calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const =0</div></div>
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<div class="ttc" id="aclassgridfire_1_1screening_1_1_screening_model_html_adef175acdbd911527f56a1f1592579a7"><div class="ttname"><a href="classgridfire_1_1screening_1_1_screening_model.html#adef175acdbd911527f56a1f1592579a7">gridfire::screening::ScreeningModel::~ScreeningModel</a></div><div class="ttdeci">virtual ~ScreeningModel()=default</div></div>
|
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<div class="ttc" id="anamespacegridfire_1_1reaction_html_aa86f08712565f278adacc7cd2361eb31"><div class="ttname"><a href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a></div><div class="ttdeci">TemplatedReactionSet< LogicalReaction > LogicalReactionSet</div><div class="ttdoc">A set of logical reactions.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00557">reaction.h:557</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_1_1screening_html"><div class="ttname"><a href="namespacegridfire_1_1screening.html">gridfire::screening</a></div><div class="ttdef"><b>Definition</b> <a href="#l00011">screening_abstract.h:11</a></div></div>
|
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<div class="ttc" id="areaction_8h_html"><div class="ttname"><a href="reaction_8h.html">reaction.h</a></div><div class="ttdoc">Defines classes for representing and managing nuclear reactions.</div></div>
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<div class="textblock"><code>#include "<a class="el" href="screening__bare_8h_source.html">gridfire/screening/screening_bare.h</a>"</code><br />
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<code>#include "fourdst/composition/atomicSpecies.h"</code><br />
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<a href="screening__bare_8cpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="preprocessor">#include "<a class="code" href="screening__bare_8h.html">gridfire/screening/screening_bare.h</a>"</span></div>
|
||||
<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span> </div>
|
||||
<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="preprocessor">#include "fourdst/composition/atomicSpecies.h"</span></div>
|
||||
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span> </div>
|
||||
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="preprocessor">#include "cppad/cppad.hpp"</span></div>
|
||||
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span> </div>
|
||||
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="preprocessor">#include <vector></span></div>
|
||||
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span> </div>
|
||||
<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span> </div>
|
||||
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacegridfire_1_1screening.html">gridfire::screening</a> {</div>
|
||||
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"><a class="line" href="namespacegridfire_1_1screening.html#ae7dd1a7ccb7bf3c05084094ab008d8a3"> 11</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="namespacegridfire_1_1screening.html#ae7dd1a7ccb7bf3c05084094ab008d8a3">ADDouble</a> = CppAD::AD<double>;</div>
|
||||
<div class="foldopen" id="foldopen00012" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"><a class="line" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac5647d633cd5bbd7cb5136b7fa4cad99"> 12</a></span> std::vector<ADDouble> <a class="code hl_function" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60">BareScreeningModel::calculateScreeningFactors</a>(</div>
|
||||
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span> <span class="keyword">const</span> <a class="code hl_typedef" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &reactions,</div>
|
||||
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span> <span class="keyword">const</span> std::vector<fourdst::atomic::Species>& species,</div>
|
||||
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span> <span class="keyword">const</span> std::vector<ADDouble> &Y,</div>
|
||||
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span> <span class="keyword">const</span> <a class="code hl_typedef" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> T9,</div>
|
||||
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span> <span class="keyword">const</span> <a class="code hl_typedef" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> rho</div>
|
||||
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span> )<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span> <span class="keywordflow">return</span> <a class="code hl_function" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a">calculateFactors_impl<ADDouble></a>(reactions, species, Y, T9, rho);</div>
|
||||
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span> }</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span> </div>
|
||||
<div class="foldopen" id="foldopen00022" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"><a class="line" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60"> 22</a></span> std::vector<double> <a class="code hl_function" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60">BareScreeningModel::calculateScreeningFactors</a>(</div>
|
||||
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> <span class="keyword">const</span> <a class="code hl_typedef" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &reactions,</div>
|
||||
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span> <span class="keyword">const</span> std::vector<fourdst::atomic::Species>& species,</div>
|
||||
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span> <span class="keyword">const</span> std::vector<double> &Y,</div>
|
||||
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> )<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span> <span class="keywordflow">return</span> <a class="code hl_function" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a">calculateFactors_impl<double></a>(reactions, species, Y, T9, rho);</div>
|
||||
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span> }</div>
|
||||
</div>
|
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<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span>}</div>
|
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<div class="ttc" id="aclassgridfire_1_1screening_1_1_bare_screening_model_html_a51119d705267e0b415aae8b4881d8c96"><div class="ttname"><a href="classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96">gridfire::screening::BareScreeningModel::ADDouble</a></div><div class="ttdeci">CppAD::AD< double > ADDouble</div><div class="ttdef"><b>Definition</b> <a href="screening__bare_8h_source.html#l00010">screening_bare.h:10</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1screening_1_1_bare_screening_model_html_a6c93b72c8ca34623127f0846d8dee50a"><div class="ttname"><a href="classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a">gridfire::screening::BareScreeningModel::calculateFactors_impl</a></div><div class="ttdeci">std::vector< T > calculateFactors_impl(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< T > &Y, const T T9, const T rho) const</div><div class="ttdef"><b>Definition</b> <a href="screening__bare_8h_source.html#l00039">screening_bare.h:39</a></div></div>
|
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<div class="ttc" id="aclassgridfire_1_1screening_1_1_bare_screening_model_html_ac35ad34c5da7e1b5087552aa5c83fe60"><div class="ttname"><a href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60">gridfire::screening::BareScreeningModel::calculateScreeningFactors</a></div><div class="ttdeci">std::vector< double > calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const override</div><div class="ttdef"><b>Definition</b> <a href="#l00022">screening_bare.cpp:22</a></div></div>
|
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<div class="ttc" id="anamespacegridfire_1_1reaction_html_aa86f08712565f278adacc7cd2361eb31"><div class="ttname"><a href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a></div><div class="ttdeci">TemplatedReactionSet< LogicalReaction > LogicalReactionSet</div><div class="ttdoc">A set of logical reactions.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00557">reaction.h:557</a></div></div>
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<div class="ttc" id="anamespacegridfire_1_1screening_html"><div class="ttname"><a href="namespacegridfire_1_1screening.html">gridfire::screening</a></div><div class="ttdef"><b>Definition</b> <a href="screening__abstract_8h_source.html#l00011">screening_abstract.h:11</a></div></div>
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<div class="ttc" id="anamespacegridfire_1_1screening_html_ae7dd1a7ccb7bf3c05084094ab008d8a3"><div class="ttname"><a href="namespacegridfire_1_1screening.html#ae7dd1a7ccb7bf3c05084094ab008d8a3">gridfire::screening::ADDouble</a></div><div class="ttdeci">CppAD::AD< double > ADDouble</div><div class="ttdef"><b>Definition</b> <a href="#l00011">screening_bare.cpp:11</a></div></div>
|
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|
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<a href="screening__bare_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="preprocessor">#pragma once</span></div>
|
||||
<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span> </div>
|
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<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="preprocessor">#include "<a class="code" href="screening__abstract_8h.html">gridfire/screening/screening_abstract.h</a>"</span></div>
|
||||
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="preprocessor">#include "<a class="code" href="reaction_8h.html">gridfire/reaction/reaction.h</a>"</span></div>
|
||||
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span> </div>
|
||||
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="preprocessor">#include "cppad/cppad.hpp"</span></div>
|
||||
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span> </div>
|
||||
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacegridfire_1_1screening.html">gridfire::screening</a> {</div>
|
||||
<div class="foldopen" id="foldopen00009" data-start="{" data-end="};">
|
||||
<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"><a class="line" href="classgridfire_1_1screening_1_1_bare_screening_model.html"> 9</a></span> <span class="keyword">class </span><a class="code hl_class" href="classgridfire_1_1screening_1_1_bare_screening_model.html">BareScreeningModel</a> final : <span class="keyword">public</span> <a class="code hl_class" href="classgridfire_1_1screening_1_1_screening_model.html">ScreeningModel</a> {</div>
|
||||
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"><a class="line" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96"> 10</a></span> <span class="keyword">using </span><a class="code hl_typedef" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> = CppAD::AD<double>;</div>
|
||||
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span> <span class="keyword">public</span>:</div>
|
||||
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span> [[nodiscard]] std::vector<double> <a class="code hl_function" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60">calculateScreeningFactors</a>(</div>
|
||||
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span> <span class="keyword">const</span> <a class="code hl_typedef" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a>& reactions,</div>
|
||||
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span> <span class="keyword">const</span> std::vector<fourdst::atomic::Species>& species,</div>
|
||||
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span> <span class="keyword">const</span> std::vector<double>& Y,</div>
|
||||
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span> <span class="keyword">const</span> <span class="keywordtype">double</span> T9,</div>
|
||||
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span> <span class="keyword">const</span> <span class="keywordtype">double</span> rho</div>
|
||||
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span> ) <span class="keyword">const override</span>;</div>
|
||||
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span> </div>
|
||||
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span> [[nodiscard]] std::vector<ADDouble> <a class="code hl_function" href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60">calculateScreeningFactors</a>(</div>
|
||||
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span> <span class="keyword">const</span> <a class="code hl_typedef" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a>& reactions,</div>
|
||||
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span> <span class="keyword">const</span> std::vector<fourdst::atomic::Species>& species,</div>
|
||||
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> <span class="keyword">const</span> std::vector<ADDouble>& Y,</div>
|
||||
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span> <span class="keyword">const</span> <a class="code hl_typedef" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> T9,</div>
|
||||
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span> <span class="keyword">const</span> <a class="code hl_typedef" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96">ADDouble</a> rho</div>
|
||||
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span> ) <span class="keyword">const override</span>;</div>
|
||||
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span> <span class="keyword">private</span>:</div>
|
||||
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> <span class="keyword">template</span> <<span class="keyword">typename</span> T></div>
|
||||
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span> [[nodiscard]] std::vector<T> <a class="code hl_function" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a">calculateFactors_impl</a>(</div>
|
||||
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span> <span class="keyword">const</span> <a class="code hl_typedef" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a>& reactions,</div>
|
||||
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span> <span class="keyword">const</span> std::vector<fourdst::atomic::Species>& species,</div>
|
||||
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span> <span class="keyword">const</span> std::vector<T>& Y,</div>
|
||||
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span> <span class="keyword">const</span> T T9,</div>
|
||||
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span> <span class="keyword">const</span> T rho</div>
|
||||
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span> ) <span class="keyword">const</span>;</div>
|
||||
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span> };</div>
|
||||
</div>
|
||||
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> </div>
|
||||
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> <span class="keyword">template</span><<span class="keyword">typename</span> T></div>
|
||||
<div class="foldopen" id="foldopen00039" data-start="{" data-end="}">
|
||||
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"><a class="line" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a"> 39</a></span> std::vector<T> <a class="code hl_function" href="classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a">BareScreeningModel::calculateFactors_impl</a>(</div>
|
||||
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> <span class="keyword">const</span> <a class="code hl_typedef" href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">reaction::LogicalReactionSet</a> &reactions,</div>
|
||||
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span> <span class="keyword">const</span> std::vector<fourdst::atomic::Species> &species,</div>
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<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> <span class="keyword">const</span> std::vector<T> &Y,</div>
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||||
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> <span class="keyword">const</span> T T9,</div>
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||||
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> <span class="keyword">const</span> T rho</div>
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||||
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span> )<span class="keyword"> const </span>{</div>
|
||||
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span> <span class="keywordflow">return</span> std::vector<T>(reactions.<a class="code hl_function" href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a6a1dc3c56690386ae9f6aa5c2aa37ba2">size</a>(), T(1.0)); <span class="comment">// Bare screening returns 1.0 for all reactions</span></div>
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||||
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span> }</div>
|
||||
</div>
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<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span>}</div>
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<div class="ttc" id="aclassgridfire_1_1reaction_1_1_templated_reaction_set_html_a6a1dc3c56690386ae9f6aa5c2aa37ba2"><div class="ttname"><a href="classgridfire_1_1reaction_1_1_templated_reaction_set.html#a6a1dc3c56690386ae9f6aa5c2aa37ba2">gridfire::reaction::TemplatedReactionSet::size</a></div><div class="ttdeci">size_t size() const</div><div class="ttdoc">Gets the number of reactions in the set.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00453">reaction.h:453</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1screening_1_1_bare_screening_model_html"><div class="ttname"><a href="classgridfire_1_1screening_1_1_bare_screening_model.html">gridfire::screening::BareScreeningModel</a></div><div class="ttdef"><b>Definition</b> <a href="#l00009">screening_bare.h:9</a></div></div>
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<div class="ttc" id="aclassgridfire_1_1screening_1_1_bare_screening_model_html_a51119d705267e0b415aae8b4881d8c96"><div class="ttname"><a href="classgridfire_1_1screening_1_1_bare_screening_model.html#a51119d705267e0b415aae8b4881d8c96">gridfire::screening::BareScreeningModel::ADDouble</a></div><div class="ttdeci">CppAD::AD< double > ADDouble</div><div class="ttdef"><b>Definition</b> <a href="#l00010">screening_bare.h:10</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1screening_1_1_bare_screening_model_html_a6c93b72c8ca34623127f0846d8dee50a"><div class="ttname"><a href="classgridfire_1_1screening_1_1_bare_screening_model.html#a6c93b72c8ca34623127f0846d8dee50a">gridfire::screening::BareScreeningModel::calculateFactors_impl</a></div><div class="ttdeci">std::vector< T > calculateFactors_impl(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< T > &Y, const T T9, const T rho) const</div><div class="ttdef"><b>Definition</b> <a href="#l00039">screening_bare.h:39</a></div></div>
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||||
<div class="ttc" id="aclassgridfire_1_1screening_1_1_bare_screening_model_html_ac35ad34c5da7e1b5087552aa5c83fe60"><div class="ttname"><a href="classgridfire_1_1screening_1_1_bare_screening_model.html#ac35ad34c5da7e1b5087552aa5c83fe60">gridfire::screening::BareScreeningModel::calculateScreeningFactors</a></div><div class="ttdeci">std::vector< double > calculateScreeningFactors(const reaction::LogicalReactionSet &reactions, const std::vector< fourdst::atomic::Species > &species, const std::vector< double > &Y, const double T9, const double rho) const override</div><div class="ttdef"><b>Definition</b> <a href="screening__bare_8cpp_source.html#l00022">screening_bare.cpp:22</a></div></div>
|
||||
<div class="ttc" id="aclassgridfire_1_1screening_1_1_screening_model_html"><div class="ttname"><a href="classgridfire_1_1screening_1_1_screening_model.html">gridfire::screening::ScreeningModel</a></div><div class="ttdef"><b>Definition</b> <a href="screening__abstract_8h_source.html#l00012">screening_abstract.h:12</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_1_1reaction_html_aa86f08712565f278adacc7cd2361eb31"><div class="ttname"><a href="namespacegridfire_1_1reaction.html#aa86f08712565f278adacc7cd2361eb31">gridfire::reaction::LogicalReactionSet</a></div><div class="ttdeci">TemplatedReactionSet< LogicalReaction > LogicalReactionSet</div><div class="ttdoc">A set of logical reactions.</div><div class="ttdef"><b>Definition</b> <a href="reaction_8h_source.html#l00557">reaction.h:557</a></div></div>
|
||||
<div class="ttc" id="anamespacegridfire_1_1screening_html"><div class="ttname"><a href="namespacegridfire_1_1screening.html">gridfire::screening</a></div><div class="ttdef"><b>Definition</b> <a href="screening__abstract_8h_source.html#l00011">screening_abstract.h:11</a></div></div>
|
||||
<div class="ttc" id="areaction_8h_html"><div class="ttname"><a href="reaction_8h.html">reaction.h</a></div><div class="ttdoc">Defines classes for representing and managing nuclear reactions.</div></div>
|
||||
<div class="ttc" id="ascreening__abstract_8h_html"><div class="ttname"><a href="screening__abstract_8h.html">screening_abstract.h</a></div></div>
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