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Merge pull request #9 from tboudreaux/feature/neutrionoLoss

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Neutrino Output from GridFire Solvers
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Emily Boudreaux
2025-11-27 15:10:26 -05:00
committed by GitHub
parent 7b67f3064a 07b2cfd055
commit 08a031f30c
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README.md
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@@ -15,53 +15,6 @@
--- ---
# Table of Contents
- [Introduction](#introduction)
- [Design Philosophy and Workflow](#design-philosophy-and-workflow)
- [Funding](#funding)
- [Usage](#usage)
- [Python installation](#python-installation)
- [pypi](#pypi)
- [source](#source)
- [source for developers](#source-for-developers)
- [patching shared object files](#patching-shared-object-files)
- [Automatic Build and Installation](#automatic-build-and-installation)
- [Script Build and Installation Instructions](#script-build-and-installation-instructions)
- [Currently, known good platforms](#currently-known-good-platforms)
- [Manual Build Instructions](#manual-build-instructions)
- [Prerequisites](#prerequisites)
- [Install Scripts](#install-scripts)
- [Dependency Installation on Common Platforms](#dependency-installation-on-common-platforms)
- [Building the C++ Library](#building-the-c-library)
- [Installing the Library](#installing-the-library)
- [Minimum compiler versions](#minimum-compiler-versions)
- [Code Architecture and Logical Flow](#code-architecture-and-logical-flow)
- [Engines](#engines)
- [GraphEngine](#graphengine)
- [GraphEngine Configuration Options](#graphengine-configuration-options)
- [Available Partition Functions](#available-partition-functions)
- [AutoDiff](#autodiff)
- [Reaclib in GridFire](#reaclib-in-gridfire)
- [Engine Views](#engine-views)
- [A Note about composability](#a-note-about-composability)
- [Numerical Solver Strategies](#numerical-solver-strategies)
- [NetworkSolverStrategy<EngineT>](#networksolverstrategyenginet)
- [NetIn and NetOut](#netin-and-netout)
- [DirectNetworkSolver (Implicit Rosenbrock Method)](#directnetworksolver-implicit-rosenbrock-method)
- [Algorithmic Workflow in DirectNetworkSolver](#algorithmic-workflow-in-directnetworksolver)
- [Future Solver Implementations](#future-solver-implementations)
- [Python Extensibility](#python-extensibility)
- [Usage Examples](#usage-examples)
- [C++](#c)
- [GraphEngine Initialization](#graphengine-initialization)
- [Adaptive Network View](#adaptive-network-view)
- [Composition Initialization](#composition-initialization)
- [Common Workflow Example](#common-workflow-example)
- [Callback Example](#callback-example)
- [Python](#python)
- [Common Workflow Example](#common-workflow-example-1)
- [Python callbacks](#python-callbacks)
- [Related Projects](#related-projects)
# Introduction # Introduction
GridFire is a C++ library designed to perform general nuclear network GridFire is a C++ library designed to perform general nuclear network
@@ -119,7 +72,7 @@ These wheels have been compiled on many systems
| Version | Platform | Architecture | CPython Versions | PyPy Versions | | Version | Platform | Architecture | CPython Versions | PyPy Versions |
|-----------|----------|--------------|------------------------------------------------------------|---------------| |-----------|----------|--------------|------------------------------------------------------------|---------------|
| 0.7.0_rc1 | macOS | arm64 | 3.8, 3.9, 3.10, 3.11, 3.12, 3.13 (std & t), 3.14 (std & t) | 3.10, 3.11 | | 0.7.0_rc1 | macOS | arm64 | 3.8, 3.9, 3.10, 3.11, 3.12, 3.13 (std & t), 3.14 (std & t) | 3.10, 3.11 |
| 0.7.0_rc1 | Linux | aarch64 | 3.8, 3.9, 3.10, 3.11, 3.12, 3.13 (std & t), 3.14 (std & t) | 3.10, 3.11 | | 0.7.0_rc1 | Linux | aarch64 | 3.8, 3.9, 3.10, 3.11, 3.12, 3.13 (std & t), 3.14 (std & t) | 3.10, 3.11 |
| 0.7.0_rc1 | Linux | x86\_64 | 3.8, 3.9, 3.10, 3.11, 3.12, 3.13 (std & t), 3.14 (std & t) | 3.10, 3.11 | | 0.7.0_rc1 | Linux | x86\_64 | 3.8, 3.9, 3.10, 3.11, 3.12, 3.13 (std & t), 3.14 (std & t) | 3.10, 3.11 |
| 0.5.0 | macOS | arm64 | 3.8, 3.9, 3.10, 3.11, 3.12, 3.13 (std & t), 3.14 (std & t) | 3.10, 3.11 | | 0.5.0 | macOS | arm64 | 3.8, 3.9, 3.10, 3.11, 3.12, 3.13 (std & t), 3.14 (std & t) | 3.10, 3.11 |
@@ -387,8 +340,8 @@ include:
- **io Module:** Defines shared interface for parsing network data from files - **io Module:** Defines shared interface for parsing network data from files
- **trigger Module:** Defines interface for complex trigger logic so that repartitioning can be followed. - **trigger Module:** Defines interface for complex trigger logic so that repartitioning can be followed.
- **Policy Module:** Contains "policies" which are small modular units of code that enforce certain contracts. - **Policy Module:** Contains "policies" which are small modular units of code that enforce certain contracts.
For example the `ProtonProtonReactionChainPolicy` enforces than an engine must include at least all the reactions For example the `ProtonProtonReactionChainPolicy` enforces than an engine must include at least all the reactions
in the proton-proton chain. This module exposes the primary construction interface for users. I.e. select a policy (such as `MainSequencePolicy`), provide a composition, and get back an engine which satisfies that policy. in the proton-proton chain. This module exposes the primary construction interface for users. I.e. select a policy (such as `MainSequencePolicy`), provide a composition, and get back an engine which satisfies that policy.
- **Python Interface:** Exposes *almost* all C++ functionality to Python, - **Python Interface:** Exposes *almost* all C++ functionality to Python,
allowing users to define compositions, configure engines, and run simulations allowing users to define compositions, configure engines, and run simulations
directly from Python scripts. directly from Python scripts.
@@ -434,25 +387,25 @@ GraphEngine exposes runtime configuration methods to tailor network
construction and rate evaluations: construction and rate evaluations:
- **Constructor Parameters:** - **Constructor Parameters:**
- `composition`: The initial seed composition to start network construction from. - `composition`: The initial seed composition to start network construction from.
- `BuildDepthType` (`Full`, `Shallow`, `SecondOrder`, etc...): controls - `BuildDepthType` (`Full`, `Shallow`, `SecondOrder`, etc...): controls
number of recursions used to construct the network topology. Can either be a number of recursions used to construct the network topology. Can either be a
member of the `NetworkBuildDepth` enum or an integer. member of the `NetworkBuildDepth` enum or an integer.
- `partition::PartitionFunction`: Partition function used when evaluating - `partition::PartitionFunction`: Partition function used when evaluating
detailed balance for inverse rates. detailed balance for inverse rates.
- `NetworkConstructionFlags`: A bitwise flag telling the network how to construct itself. That is, what reaction types should be used in construction. For example one might use `NetworkConstructionFlags::STRONG | NetworkConstructionFlags::BETA_PLUS` to use all strong reactions and β+ decay. By Default this is set to use reaclib strong and reaclib weak (no WRL included by default due to current pathological stiffness issues). - `NetworkConstructionFlags`: A bitwise flag telling the network how to construct itself. That is, what reaction types should be used in construction. For example one might use `NetworkConstructionFlags::STRONG | NetworkConstructionFlags::BETA_PLUS` to use all strong reactions and β+ decay. By Default this is set to use reaclib strong and reaclib weak (no WRL included by default due to current pathological stiffness issues).
- **setPrecomputation(bool precompute):** - **setPrecomputation(bool precompute):**
- Enable/disable caching of reaction rates and stoichiometric data at initialization. - Enable/disable caching of reaction rates and stoichiometric data at initialization.
- *Effect:* Reduces per-step overhead; increases memory and setup time. - *Effect:* Reduces per-step overhead; increases memory and setup time.
- **setScreeningModel(ScreeningType type):** - **setScreeningModel(ScreeningType type):**
- Choose plasma screening (models: `BARE`, `WEAK`). - Choose plasma screening (models: `BARE`, `WEAK`).
- *Effect:* Alters rate enhancement under dense/low-T conditions, impacting stiffness. - *Effect:* Alters rate enhancement under dense/low-T conditions, impacting stiffness.
- **setUseReverseReactions(bool useReverse):** - **setUseReverseReactions(bool useReverse):**
- Toggle inclusion of reverse (detailed balance) reactions. - Toggle inclusion of reverse (detailed balance) reactions.
- *Effect:* Improves equilibrium fidelity; increases network size and stiffness. - *Effect:* Improves equilibrium fidelity; increases network size and stiffness.
### Available Partition Functions ### Available Partition Functions
@@ -564,11 +517,11 @@ A `NetIn` struct contains
A `NetOut` struct contains A `NetOut` struct contains
- The final composition after evolving to `tMax` (`NetOut::composition`) - The final composition after evolving to `tMax` (`NetOut::composition`)
- The number of steps the solver took to evolve to `tmax` (`NetOut::num_steps`) - The number of steps the solver took to evolve to `tmax` (`NetOut::num_steps`)
- The final energy generated by the network while evolving to `tMax` - The final specific energy generated by the network while evolving to `tMax` (`NetOut::energy`) [erg/g]
(`NetOut::energy`) - The derivative of energy with respect to temperature at the end of the evolution (`NetOut::dEps_dT`)
- The derivative of energy with respect to density at the end of the evolution (`NetOut::dEps_dRho`)
>**Note:** Currently `GraphEngine` only considers energy due to nuclear mass - The total specific energy lost to neutrinos while evolving to `tMax` (`NetOut::total_neutrino_loss`) [erg/g]
>defect and not neutrino loss. - The total flux of neutrinos while evolving to `tMax` (`NetOut::total_neutrino_flux`)
### CVODESolverStrategy ### CVODESolverStrategy
@@ -793,9 +746,9 @@ All GridFire C++ types have been bound and can be passed around as one would exp
The syntax for registration is very similar to C++. There are a few things to note about this more robust example The syntax for registration is very similar to C++. There are a few things to note about this more robust example
1. Note how I use a callback and a log object to store the state of the simulation at each timestep. 1. Note how I use a callback and a log object to store the state of the simulation at each timestep.
2. If you have tools such as mypy installed you will see that the python bindings are strongly typed. This is 2. If you have tools such as mypy installed you will see that the python bindings are strongly typed. This is
intentional to help users avoid mistakes when writing code. intentional to help users avoid mistakes when writing code.
```python ```python
from fourdst.composition import Composition from fourdst.composition import Composition
from gridfire.type import NetIn from gridfire.type import NetIn
@@ -962,6 +915,8 @@ int main() {
double energy_out; double energy_out;
double dEps_dT; double dEps_dT;
double dEps_dRho; double dEps_dRho;
double neutrino_energy_loss;
double neutrino_flux;
double mass_lost; double mass_lost;
ret = gf_evolve( ret = gf_evolve(
@@ -975,7 +930,10 @@ int main() {
Y_out, Y_out,
&energy_out, &energy_out,
&dEps_dT, &dEps_dT,
&dEps_dRho, &mass_lost &dEps_dRho,
&neutrino_energy_loss,
&neutrino_flux,
&mass_lost
); );
GF_CHECK_RET_CODE(ret, gf_context, "Evolution"); GF_CHECK_RET_CODE(ret, gf_context, "Evolution");
@@ -1058,7 +1016,7 @@ program main
! Output buffers ! Output buffers
real(c_double), dimension(8) :: Y_out real(c_double), dimension(8) :: Y_out
real(c_double) :: energy_out, dedt, dedrho, dmass real(c_double) :: energy_out, dedt, dedrho, nu_E_loss, nu_flux, dmass
! Thermodynamic Conditions (Solar Core-ish) ! Thermodynamic Conditions (Solar Core-ish)
real(c_double) :: T = 1.5e7 ! 15 Million K real(c_double) :: T = 1.5e7 ! 15 Million K
@@ -1082,7 +1040,7 @@ program main
! --- 5. Evolve --- ! --- 5. Evolve ---
print *, "Evolving system (dt =", dt, "s)..." print *, "Evolving system (dt =", dt, "s)..."
call net%evolve(Y_in, T, rho, dt, Y_out, energy_out, dedt, dedrho, dmass, ierr) call net%evolve(Y_in, T, rho, dt, Y_out, energy_out, dedt, dedrho, nu_E_loss, nu_flux, dmass, ierr)
if (ierr /= 0) then if (ierr /= 0) then
print *, "Evolution Failed with error code: ", ierr print *, "Evolution Failed with error code: ", ierr

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<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc1</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

2
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@@ -29,7 +29,7 @@
<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc1</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

2
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@@ -29,7 +29,7 @@
<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
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<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc1</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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<tr id="row_0_7_3_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" target="_self">Reaction</a></td><td class="desc">Represents a single nuclear reaction from a specific data source </td></tr> <tr id="row_0_7_3_" class="odd" style="display:none;"><td class="entry"><span style="width:48px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="classgridfire_1_1reaction_1_1_reaction.html" target="_self">Reaction</a></td><td class="desc">Represents a single nuclear reaction from a specific data source </td></tr>
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<tr id="row_5_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_engine.html" target="_self">PyEngine</a></td><td class="desc"></td></tr> <tr id="row_1_7_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structgridfire__mod_1_1gridfire.html" target="_self">gridfire</a></td><td class="desc"></td></tr>
<tr id="row_6_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_engine_view.html" target="_self">PyEngineView</a></td><td class="desc"></td></tr> <tr id="row_2_" class="even"><td class="entry"><span style="width:0px;display:inline-block;">&#160;</span><span id="arr_2_" class="arrow" onclick="dynsection.toggleFolder('2_')">&#9660;</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacestd.html" target="_self">std</a></td><td class="desc">STL namespace </td></tr>
<tr id="row_7_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_network_file_parser.html" target="_self">PyNetworkFileParser</a></td><td class="desc"></td></tr> <tr id="row_2_0_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structstd_1_1formatter_3_01gridfire_1_1engine_1_1_network_jacobian_01_4.html" target="_self">formatter&lt; gridfire::engine::NetworkJacobian &gt;</a></td><td class="desc"></td></tr>
<tr id="row_8_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_network_policy.html" target="_self">PyNetworkPolicy</a></td><td class="desc"></td></tr> <tr id="row_2_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structstd_1_1hash_3_01gridfire_1_1rates_1_1weak_1_1_table_axes_01_4.html" target="_self">hash&lt; gridfire::rates::weak::TableAxes &gt;</a></td><td class="desc"></td></tr>
<tr id="row_9_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_partition_function.html" target="_self">PyPartitionFunction</a></td><td class="desc"></td></tr> <tr id="row_2_2_" class="odd"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structstd_1_1hash_3_01gridfire_1_1reaction_1_1_reaction_01_4.html" target="_self">hash&lt; gridfire::reaction::Reaction &gt;</a></td><td class="desc"></td></tr>
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<tr id="row_11_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_screening.html" target="_self">PyScreening</a></td><td class="desc"></td></tr> <tr id="row_3_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="struct_grid_fire_context.html" target="_self">GridFireContext</a></td><td class="desc"></td></tr>
<tr id="row_12_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_solver_context_base.html" target="_self">PySolverContextBase</a></td><td class="desc"></td></tr> <tr id="row_4_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_dynamic_engine.html" target="_self">PyDynamicEngine</a></td><td class="desc"></td></tr>
<tr id="row_13_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_solver_plugin_interface.html" target="_self">SolverPluginInterface</a></td><td class="desc"></td></tr> <tr id="row_5_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_dynamic_engine_view.html" target="_self">PyDynamicEngineView</a></td><td class="desc"></td></tr>
<tr id="row_6_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_dynamic_network_solver_strategy.html" target="_self">PyDynamicNetworkSolverStrategy</a></td><td class="desc"></td></tr>
<tr id="row_7_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_engine.html" target="_self">PyEngine</a></td><td class="desc"></td></tr>
<tr id="row_8_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_engine_view.html" target="_self">PyEngineView</a></td><td class="desc"></td></tr>
<tr id="row_9_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_network_file_parser.html" target="_self">PyNetworkFileParser</a></td><td class="desc"></td></tr>
<tr id="row_10_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_network_policy.html" target="_self">PyNetworkPolicy</a></td><td class="desc"></td></tr>
<tr id="row_11_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_partition_function.html" target="_self">PyPartitionFunction</a></td><td class="desc"></td></tr>
<tr id="row_12_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_reaction_chain_policy.html" target="_self">PyReactionChainPolicy</a></td><td class="desc"></td></tr>
<tr id="row_13_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_screening.html" target="_self">PyScreening</a></td><td class="desc"></td></tr>
<tr id="row_14_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_py_solver_context_base.html" target="_self">PySolverContextBase</a></td><td class="desc"></td></tr>
<tr id="row_15_" class="odd"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_solver_plugin_interface.html" target="_self">SolverPluginInterface</a></td><td class="desc"></td></tr>
</table> </table>
</div><!-- directory --> </div><!-- directory -->
</div><!-- contents --> </div><!-- contents -->

14
docs/html/annotated_dup.js
View File

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<dd><a class="el" href="classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html">UnableToSetNetworkReactionsError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.html">UninitializedJacobianError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_unknown_jacobian_error.html">UnknownJacobianError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_solver_1_1_user_data.html">MultiscalePartitioningEngineView::QSESolver::UserData</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_utility_error.html">UtilityError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd></dl> <dd><a class="el" href="classgridfire_1_1exceptions_1_1_unable_to_set_network_reactions_error.html">UnableToSetNetworkReactionsError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_uninitialized_jacobian_error.html">UninitializedJacobianError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_unknown_jacobian_error.html">UnknownJacobianError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd><dd><a class="el" href="structgridfire_1_1engine_1_1_multiscale_partitioning_engine_view_1_1_q_s_e_solver_1_1_user_data.html">MultiscalePartitioningEngineView::QSESolver::UserData</a> (<a class="el" href="namespacegridfire_1_1engine.html">gridfire::engine</a>)</dd><dd><a class="el" href="classgridfire_1_1exceptions_1_1_utility_error.html">UtilityError</a> (<a class="el" href="namespacegridfire_1_1exceptions.html">gridfire::exceptions</a>)</dd></dl>
<dl class="classindex odd"> <dl class="classindex odd">
<dt class="alphachar"><a id="letter_W" name="letter_W">W</a></dt> <dt class="alphachar"><a id="letter_W" name="letter_W">W</a></dt>
<dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html">WeakRateDerivatives</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">WeakRateInterpolator</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">WeakRatePayload</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">WeakReaction</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">WeakReactionEntry</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html">WeakReactionMap</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">WeakScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd></dl> <dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_derivatives.html">WeakRateDerivatives</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_rate_interpolator.html">WeakRateInterpolator</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_rate_payload.html">WeakRatePayload</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1reaction_1_1_weak_reaclib_reaction.html">WeakReaclibReaction</a> (<a class="el" href="namespacegridfire_1_1reaction.html">gridfire::reaction</a>)</dd><dd><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction.html">WeakReaction</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="structgridfire_1_1rates_1_1weak_1_1_weak_reaction_entry.html">WeakReactionEntry</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1rates_1_1weak_1_1_weak_reaction_map.html">WeakReactionMap</a> (<a class="el" href="namespacegridfire_1_1rates_1_1weak.html">gridfire::rates::weak</a>)</dd><dd><a class="el" href="classgridfire_1_1screening_1_1_weak_screening_model.html">WeakScreeningModel</a> (<a class="el" href="namespacegridfire_1_1screening.html">gridfire::screening</a>)</dd></dl>
</div> </div>
</div><!-- contents --> </div><!-- contents -->
</div><!-- doc-content --> </div><!-- doc-content -->

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@@ -29,7 +29,7 @@
<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc1</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

2
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@@ -29,7 +29,7 @@
<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc1</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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@@ -29,7 +29,7 @@
<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc1</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

2
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@@ -29,7 +29,7 @@
<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc1</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

2
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@@ -29,7 +29,7 @@
<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc1</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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@@ -29,7 +29,7 @@
<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc1</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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@@ -29,7 +29,7 @@
<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc1</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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@@ -29,7 +29,7 @@
<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc1</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

2
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@@ -29,7 +29,7 @@
<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc1</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

4
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@@ -29,7 +29,7 @@
<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc1</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>
@@ -139,7 +139,7 @@ class gridfire::engine::EngineView&lt; EngineT &gt;</div><p>Abstract base class
<div class="line"><span class="keyword">private</span>:</div> <div class="line"><span class="keyword">private</span>:</div>
<div class="line"> DynamicEngine&amp; engine_;</div> <div class="line"> DynamicEngine&amp; engine_;</div>
<div class="line">};</div> <div class="line">};</div>
<div class="ttc" id="aclassgridfire_1_1engine_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1engine_1_1_dynamic_engine.html">gridfire::engine::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> engine_abstract.h:172</div></div> <div class="ttc" id="aclassgridfire_1_1engine_1_1_dynamic_engine_html"><div class="ttname"><a href="classgridfire_1_1engine_1_1_dynamic_engine.html">gridfire::engine::DynamicEngine</a></div><div class="ttdoc">Abstract class for engines supporting Jacobian and stoichiometry operations.</div><div class="ttdef"><b>Definition</b> engine_abstract.h:175</div></div>
<div class="ttc" id="anamespacegridfire_1_1engine_html"><div class="ttname"><a href="namespacegridfire_1_1engine.html">gridfire::engine</a></div><div class="ttdef"><b>Definition</b> dynamic_engine_diagnostics.h:38</div></div> <div class="ttc" id="anamespacegridfire_1_1engine_html"><div class="ttname"><a href="namespacegridfire_1_1engine.html">gridfire::engine</a></div><div class="ttdef"><b>Definition</b> dynamic_engine_diagnostics.h:38</div></div>
</div><!-- fragment --><dl class="section see"><dt>See also</dt><dd>gridfire::AdaptiveEngineView for a concrete example of dynamic culling. </dd></dl> </div><!-- fragment --><dl class="section see"><dt>See also</dt><dd>gridfire::AdaptiveEngineView for a concrete example of dynamic culling. </dd></dl>
</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2> </div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>

2
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@@ -29,7 +29,7 @@
<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc1</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

2
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@@ -29,7 +29,7 @@
<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc1</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

2
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@@ -29,7 +29,7 @@
<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc1</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>

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@@ -29,7 +29,7 @@
<tbody> <tbody>
<tr id="projectrow"> <tr id="projectrow">
<td id="projectalign"> <td id="projectalign">
<div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc1</span> <div id="projectname">GridFire<span id="projectnumber">&#160;v0.7.0_rc2</span>
</div> </div>
<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
</td> </td>
@@ -3021,10 +3021,10 @@ If a species is in the input comp but not in the network </dd></dl>
<div class="line"> {<a class="code hl_enumvalue" href="#a19305dc4affde99bb84056c9eeda9f1ea162cb379760275c9685281ee27025cdb">JacobianMatrixState::READY_DENSE</a>, <span class="stringliteral">&quot;Ready (dense)&quot;</span>},</div> <div class="line"> {<a class="code hl_enumvalue" href="#a19305dc4affde99bb84056c9eeda9f1ea162cb379760275c9685281ee27025cdb">JacobianMatrixState::READY_DENSE</a>, <span class="stringliteral">&quot;Ready (dense)&quot;</span>},</div>
<div class="line"> {<a class="code hl_enumvalue" href="#a19305dc4affde99bb84056c9eeda9f1eabf43af1b1ac8bc6cb42296815a429ae3">JacobianMatrixState::READY_SPARSE</a>, <span class="stringliteral">&quot;Ready (sparse)&quot;</span>},</div> <div class="line"> {<a class="code hl_enumvalue" href="#a19305dc4affde99bb84056c9eeda9f1eabf43af1b1ac8bc6cb42296815a429ae3">JacobianMatrixState::READY_SPARSE</a>, <span class="stringliteral">&quot;Ready (sparse)&quot;</span>},</div>
<div class="line"> }</div> <div class="line"> }</div>
<div class="ttc" id="aclassgridfire_1_1engine_1_1_graph_engine_html_a19305dc4affde99bb84056c9eeda9f1ea162cb379760275c9685281ee27025cdb"><div class="ttname"><a href="#a19305dc4affde99bb84056c9eeda9f1ea162cb379760275c9685281ee27025cdb">gridfire::engine::GraphEngine::JacobianMatrixState::READY_DENSE</a></div><div class="ttdeci">@ READY_DENSE</div><div class="ttdef"><b>Definition</b> engine_graph.h:786</div></div> <div class="ttc" id="aclassgridfire_1_1engine_1_1_graph_engine_html_a19305dc4affde99bb84056c9eeda9f1ea162cb379760275c9685281ee27025cdb"><div class="ttname"><a href="#a19305dc4affde99bb84056c9eeda9f1ea162cb379760275c9685281ee27025cdb">gridfire::engine::GraphEngine::JacobianMatrixState::READY_DENSE</a></div><div class="ttdeci">@ READY_DENSE</div><div class="ttdef"><b>Definition</b> engine_graph.h:787</div></div>
<div class="ttc" id="aclassgridfire_1_1engine_1_1_graph_engine_html_a19305dc4affde99bb84056c9eeda9f1ea4d855a061b3066dc14a3b12ed26b5456"><div class="ttname"><a href="#a19305dc4affde99bb84056c9eeda9f1ea4d855a061b3066dc14a3b12ed26b5456">gridfire::engine::GraphEngine::JacobianMatrixState::STALE</a></div><div class="ttdeci">@ STALE</div><div class="ttdef"><b>Definition</b> engine_graph.h:785</div></div> <div class="ttc" id="aclassgridfire_1_1engine_1_1_graph_engine_html_a19305dc4affde99bb84056c9eeda9f1ea4d855a061b3066dc14a3b12ed26b5456"><div class="ttname"><a href="#a19305dc4affde99bb84056c9eeda9f1ea4d855a061b3066dc14a3b12ed26b5456">gridfire::engine::GraphEngine::JacobianMatrixState::STALE</a></div><div class="ttdeci">@ STALE</div><div class="ttdef"><b>Definition</b> engine_graph.h:786</div></div>
<div class="ttc" id="aclassgridfire_1_1engine_1_1_graph_engine_html_a19305dc4affde99bb84056c9eeda9f1eabf43af1b1ac8bc6cb42296815a429ae3"><div class="ttname"><a href="#a19305dc4affde99bb84056c9eeda9f1eabf43af1b1ac8bc6cb42296815a429ae3">gridfire::engine::GraphEngine::JacobianMatrixState::READY_SPARSE</a></div><div class="ttdeci">@ READY_SPARSE</div><div class="ttdef"><b>Definition</b> engine_graph.h:787</div></div> <div class="ttc" id="aclassgridfire_1_1engine_1_1_graph_engine_html_a19305dc4affde99bb84056c9eeda9f1eabf43af1b1ac8bc6cb42296815a429ae3"><div class="ttname"><a href="#a19305dc4affde99bb84056c9eeda9f1eabf43af1b1ac8bc6cb42296815a429ae3">gridfire::engine::GraphEngine::JacobianMatrixState::READY_SPARSE</a></div><div class="ttdeci">@ READY_SPARSE</div><div class="ttdef"><b>Definition</b> engine_graph.h:788</div></div>
<div class="ttc" id="aclassgridfire_1_1engine_1_1_graph_engine_html_a19305dc4affde99bb84056c9eeda9f1eadd652546039b18970b8dcf2cff824268"><div class="ttname"><a href="#a19305dc4affde99bb84056c9eeda9f1eadd652546039b18970b8dcf2cff824268">gridfire::engine::GraphEngine::JacobianMatrixState::UNINITIALIZED</a></div><div class="ttdeci">@ UNINITIALIZED</div><div class="ttdef"><b>Definition</b> engine_graph.h:784</div></div> <div class="ttc" id="aclassgridfire_1_1engine_1_1_graph_engine_html_a19305dc4affde99bb84056c9eeda9f1eadd652546039b18970b8dcf2cff824268"><div class="ttname"><a href="#a19305dc4affde99bb84056c9eeda9f1eadd652546039b18970b8dcf2cff824268">gridfire::engine::GraphEngine::JacobianMatrixState::UNINITIALIZED</a></div><div class="ttdeci">@ UNINITIALIZED</div><div class="ttdef"><b>Definition</b> engine_graph.h:785</div></div>
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2
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<div id="projectbrief">General Purpose Nuclear Network</div> <div id="projectbrief">General Purpose Nuclear Network</div>
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2
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2
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2
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@@ -29,7 +29,7 @@
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Inheritance diagram for gridfire::engine::Reaction:</div> Inheritance diagram for gridfire::engine::Reaction:</div>
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<div class="line"><span class="keywordtype">double</span> rate = p_gamma_d.<a class="code hl_function" href="classgridfire_1_1reaction_1_1_reaction.html#a83c121480533593adfd68c4a67a649f1">calculate_rate</a>(0.1); <span class="comment">// T9 = 0.1</span></div> <div class="line"><span class="keywordtype">double</span> rate = p_gamma_d.<a class="code hl_function" href="classgridfire_1_1reaction_1_1_reaction.html#a83c121480533593adfd68c4a67a649f1">calculate_rate</a>(0.1); <span class="comment">// T9 = 0.1</span></div>
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