GridFire 0.0.1a General Purpose Nuclear Network

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gridfire::GraphEngine Member List

This is the complete list of members for gridfire::GraphEngine, including all inherited members.

calculateAllDerivatives(const std::vector< T > &Y_in, T T9, T rho) const | gridfire::GraphEngine | private
calculateAllDerivatives(const std::vector< double > &Y_in, const double T9, const double rho) const | gridfire::GraphEngine | private
calculateAllDerivatives(const std::vector< ADDouble > &Y_in, const ADDouble &T9, const ADDouble &rho) const | gridfire::GraphEngine | private
calculateAllDerivativesUsingPrecomputation(const std::vector< double > &Y_in, const std::vector< double > &bare_rates, const std::vector< double > &bare_reverse_rates, double T9, double rho) const | gridfire::GraphEngine | private
calculateMolarReactionFlow(const reaction::Reaction &reaction, const std::vector< double > &Y, const double T9, const double rho) const override | gridfire::GraphEngine | virtual
calculateMolarReactionFlow(const reaction::Reaction &reaction, const std::vector< T > &Y, const T T9, const T rho) const | gridfire::GraphEngine | private
calculateReverseMolarReactionFlow(T T9, T rho, std::vector< T > screeningFactors, std::vector< T > Y, size_t reactionIndex, const reaction::LogicalReaction &reaction) const | gridfire::GraphEngine | private
calculateReverseRate(const reaction::Reaction &reaction, double T9) const | gridfire::GraphEngine |
calculateReverseRateTwoBody(const reaction::Reaction &reaction, const double T9, const double forwardRate, const double expFactor) const | gridfire::GraphEngine |
calculateReverseRateTwoBodyDerivative(const reaction::Reaction &reaction, const double T9, const double reverseRate) const | gridfire::GraphEngine |
calculateRHSAndEnergy(const std::vector< double > &Y, const double T9, const double rho) const override | gridfire::GraphEngine | virtual
collectAtomicReverseRateAtomicBases() | gridfire::GraphEngine | private
collectNetworkSpecies() | gridfire::GraphEngine | private
exportToCSV(const std::string &filename) const | gridfire::GraphEngine |
exportToDot(const std::string &filename) const | gridfire::GraphEngine |
generateJacobianMatrix(const std::vector< double > &Y_dynamic, const double T9, const double rho) const override | gridfire::GraphEngine | virtual
generateJacobianMatrix(const std::vector< double > &Y_dynamic, double T9, double rho, const SparsityPattern &sparsityPattern) const override | gridfire::GraphEngine | virtual
generateStoichiometryMatrix() override | gridfire::GraphEngine | virtual
getDepth() const override | gridfire::GraphEngine | virtual
getJacobianMatrixEntry(const int i, const int j) const override | gridfire::GraphEngine | virtual
getNetReactionStoichiometry(const reaction::Reaction &reaction) | gridfire::GraphEngine | static
getNetworkReactions() const override | gridfire::GraphEngine | virtual
getNetworkSpecies() const override | gridfire::GraphEngine | virtual
getPartitionFunction() const | gridfire::GraphEngine |
getScreeningModel() const override | gridfire::GraphEngine | virtual
getSpeciesDestructionTimescales(const std::vector< double > &Y, double T9, double rho) const override | gridfire::GraphEngine | virtual
getSpeciesIndex(const fourdst::atomic::Species &species) const override | gridfire::GraphEngine | virtual
getSpeciesTimescales(const std::vector< double > &Y, double T9, double rho) const override | gridfire::GraphEngine | virtual
getStoichiometryMatrixEntry(const int speciesIndex, const int reactionIndex) const override | gridfire::GraphEngine | virtual
GraphEngine(const fourdst::composition::Composition &composition, const BuildDepthType=NetworkBuildDepth::Full) | gridfire::GraphEngine | explicit
GraphEngine(const fourdst::composition::Composition &composition, const partition::PartitionFunction &partitionFunction, const BuildDepthType buildDepth=NetworkBuildDepth::Full) | gridfire::GraphEngine | explicit
GraphEngine(const reaction::LogicalReactionSet &reactions) | gridfire::GraphEngine | explicit
involvesSpecies(const fourdst::atomic::Species &species) const | gridfire::GraphEngine |
isPrecomputationEnabled() const | gridfire::GraphEngine |
isStale(const NetIn &netIn) override | gridfire::GraphEngine | virtual
isUsingReverseReactions() const | gridfire::GraphEngine |
m_atomicReverseRates | gridfire::GraphEngine | private
m_config | gridfire::GraphEngine | private
m_constants | gridfire::GraphEngine | private
m_depth | gridfire::GraphEngine | private
m_full_jacobian_sparsity_pattern | gridfire::GraphEngine | private
m_jac_work | gridfire::GraphEngine | mutable private
m_jacobianMatrix | gridfire::GraphEngine | mutable private
m_logger | gridfire::GraphEngine | private
m_networkSpecies | gridfire::GraphEngine | private
m_networkSpeciesMap | gridfire::GraphEngine | private
m_partitionFunction | gridfire::GraphEngine | private
m_precomputedReactions | gridfire::GraphEngine | private
m_reactionIDMap | gridfire::GraphEngine | private
m_reactions | gridfire::GraphEngine | private
m_rhsADFun | gridfire::GraphEngine | mutable private
m_screeningModel | gridfire::GraphEngine | private
m_screeningType | gridfire::GraphEngine | private
m_speciesToIndexMap | gridfire::GraphEngine | private
m_stoichiometryMatrix | gridfire::GraphEngine | private
m_usePrecomputation | gridfire::GraphEngine | private
m_useReverseReactions | gridfire::GraphEngine | private
mapNetInToMolarAbundanceVector(const NetIn &netIn) const override | gridfire::GraphEngine | virtual
populateReactionIDMap() | gridfire::GraphEngine | private
populateSpeciesToIndexMap() | gridfire::GraphEngine | private
precomputeNetwork() | gridfire::GraphEngine | private
primeEngine(const NetIn &netIn) override | gridfire::GraphEngine | virtual
rebuild(const fourdst::composition::Composition &comp, const BuildDepthType depth) override | gridfire::GraphEngine | virtual
recordADTape() | gridfire::GraphEngine | private
reserveJacobianMatrix() const | gridfire::GraphEngine | private
setNetworkReactions(const reaction::LogicalReactionSet &reactions) override | gridfire::GraphEngine | virtual
setPrecomputation(bool precompute) | gridfire::GraphEngine |
setScreeningModel(screening::ScreeningType) override | gridfire::GraphEngine | virtual
setUseReverseReactions(bool useReverse) | gridfire::GraphEngine |
syncInternalMaps() | gridfire::GraphEngine | private
update(const NetIn &netIn) override | gridfire::GraphEngine | virtual
validateConservation() const | gridfire::GraphEngine | private
~Engine()=default | gridfire::Engine | virtual